Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305080 | XP_003597930.2 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.80e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305080 | sp|P42322|CANB1_NAEGR | 37.500 | 168 | 91 | 3 | 1 | 156 | 1 | 166 | 6.89e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305080 | B7FH75 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 4.68e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0304960 | Msa0305080 | 0.973514 | 1.477219e-136 | -8.615850e-47 |
| Msa0305080 | Msa0341360 | 0.886568 | 3.054370e-72 | -8.615850e-47 |
| Msa0305080 | Msa1417560 | 0.811565 | 6.568807e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305080 | MtrunA17_Chr2g0333301 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.01e-119 | 332 |
| Msa0305080 | MtrunA17_Chr4g0073661 | 69.143 | 175 | 47 | 1 | 1 | 168 | 1 | 175 | 3.36e-87 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305080 | AT3G18430.1 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0305080 | AT3G18430.3 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0305080 | AT3G18430.2 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
Find 56 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGGTTCTTGGCCATTC+TGG | 0.182957 | 2_3:+62522490 | Msa0305080:intron |
| TTCAGCTTGTTCCACTAAAT+TGG | 0.223800 | 2_3:-62522831 | None:intergenic |
| TGTACTAAATGCAGATAAAA+AGG | 0.239607 | 2_3:-62521487 | None:intergenic |
| GACATTGGATGATTTCATTA+AGG | 0.296420 | 2_3:+62522295 | Msa0305080:CDS |
| ATTTGAAACTTCCAATTTAG+TGG | 0.305172 | 2_3:+62522820 | Msa0305080:three_prime_UTR |
| ACTGACTCAAGTTTGAATTC+AGG | 0.314102 | 2_3:-62522790 | None:intergenic |
| TCATCTCCTCATATCATATC+AGG | 0.315446 | 2_3:+62520549 | Msa0305080:five_prime_UTR |
| TATCCCCATTGGAGCTGATT+TGG | 0.321972 | 2_3:+62522704 | Msa0305080:three_prime_UTR |
| TTAAATTTGTCACAGGTTCT+TGG | 0.342309 | 2_3:+62522481 | Msa0305080:intron |
| AGTTTACCCTGTTCTCTTGA+AGG | 0.361059 | 2_3:+62522558 | Msa0305080:three_prime_UTR |
| TTTGATTTCTCAGGAAGTCT+TGG | 0.366861 | 2_3:+62522229 | Msa0305080:intron |
| ATTTCATCCTTCAAGAGAAC+AGG | 0.368655 | 2_3:-62522565 | None:intergenic |
| TTGATTTCTCAGGAAGTCTT+GGG | 0.378929 | 2_3:+62522230 | Msa0305080:intron |
| AGGTTACTCAAGATGGTTGA+TGG | 0.393812 | 2_3:+62521441 | Msa0305080:CDS |
| TGTTATGAATCCACTTTCTC+AGG | 0.398536 | 2_3:+62520976 | Msa0305080:CDS |
| TCATGTGAACTTTGGTTGAT+TGG | 0.404851 | 2_3:-62522875 | None:intergenic |
| GGTGTCTTTCAAAGACATAT+TGG | 0.407546 | 2_3:+62521818 | Msa0305080:CDS |
| ATTTGATTCAGTTTCTCAAC+AGG | 0.411656 | 2_3:+62520862 | Msa0305080:intron |
| CTTCCTGCCACTATCCCCAT+TGG | 0.413036 | 2_3:+62522693 | Msa0305080:three_prime_UTR |
| GAGATGAGAATTGAGATAGT+TGG | 0.414312 | 2_3:-62520533 | None:intergenic |
| AGCTGAAATGATTTCAATGC+TGG | 0.422375 | 2_3:+62522847 | Msa0305080:three_prime_UTR |
| GAAATTGTAAACTGTATTCA+TGG | 0.427606 | 2_3:+62522583 | Msa0305080:three_prime_UTR |
| ATTGAATTGAATTGAATTGA+TGG | 0.428955 | 2_3:+62520679 | Msa0305080:exon |
| GAAGTTCTAAAAGATTTGTC+TGG | 0.444669 | 2_3:+62521840 | Msa0305080:CDS |
| CTGACTCAAGTTTGAATTCA+GGG | 0.454749 | 2_3:-62522789 | None:intergenic |
| ATCAGCTCCAATGGGGATAG+TGG | 0.462785 | 2_3:-62522700 | None:intergenic |
| GTAGTAGTAATAAGTACGTT+TGG | 0.472713 | 2_3:+62520407 | Msa0305080:five_prime_UTR |
| ATCCTGCTTCTTTCAGAACC+TGG | 0.474604 | 2_3:-62522253 | None:intergenic |
| TTCTCAGGAAGTCTTGGGCC+AGG | 0.475351 | 2_3:+62522235 | Msa0305080:intron |
| CAACTTGACAGAAATGCTAA+AGG | 0.478282 | 2_3:+62520914 | Msa0305080:CDS |
| TTTGCAGAGGTTACTCAAGA+TGG | 0.478552 | 2_3:+62521434 | Msa0305080:intron |
| GCTACCAAATCAGCTCCAAT+GGG | 0.484232 | 2_3:-62522708 | None:intergenic |
| AAGGTGAGTGCAGTGTCCTT+AGG | 0.488728 | 2_3:-62520505 | None:intergenic |
| TGCAGTGTCCTTAGGAAGGA+AGG | 0.494826 | 2_3:-62520497 | None:intergenic |
| TTGAATTGAATTGAATTGAT+GGG | 0.497536 | 2_3:+62520680 | Msa0305080:exon |
| ATTGAGATAGTTGGATTCAA+AGG | 0.499420 | 2_3:-62520524 | None:intergenic |
| TGATATGATACCTGAGAAAG+TGG | 0.501757 | 2_3:-62520986 | None:intergenic |
| AGAAATGTTCATGTGAACTT+TGG | 0.502754 | 2_3:-62522883 | None:intergenic |
| TCTGCATTTAGTACAAAAGC+TGG | 0.505330 | 2_3:+62521495 | Msa0305080:CDS |
| GTATATGATTCGGATCGTAA+TGG | 0.510196 | 2_3:+62521792 | Msa0305080:CDS |
| AGCTACCAAATCAGCTCCAA+TGG | 0.511364 | 2_3:-62522709 | None:intergenic |
| GCTAACTCAATATGATATTG+AGG | 0.520808 | 2_3:+62520718 | Msa0305080:CDS |
| CAAGGTTATAAAATATGTCC+AGG | 0.529066 | 2_3:-62522759 | None:intergenic |
| GCTCCAATGGGGATAGTGGC+AGG | 0.529705 | 2_3:-62522696 | None:intergenic |
| GGCCAGGTTCTGAAAGAAGC+AGG | 0.530644 | 2_3:+62522251 | Msa0305080:CDS |
| TGAATTCAGGGAACCAAACA+AGG | 0.536734 | 2_3:-62522777 | None:intergenic |
| AAAAGACTGCTACTTGACAT+TGG | 0.563411 | 2_3:+62522280 | Msa0305080:CDS |
| ATTCATAACAAACTCAGGAA+TGG | 0.567071 | 2_3:-62520963 | None:intergenic |
| AGTGGATTCATAACAAACTC+AGG | 0.575670 | 2_3:-62520968 | None:intergenic |
| TGAATTGAATTGAATTGATG+GGG | 0.591092 | 2_3:+62520681 | Msa0305080:exon |
| TGAGTGCAGTGTCCTTAGGA+AGG | 0.592901 | 2_3:-62520501 | None:intergenic |
| GCAGTGTCCTTAGGAAGGAA+GGG | 0.630055 | 2_3:-62520496 | None:intergenic |
| TGATTCGGATCGTAATGGAA+AGG | 0.642698 | 2_3:+62521797 | Msa0305080:CDS |
| TTTCATCCTTCAAGAGAACA+GGG | 0.644647 | 2_3:-62522564 | None:intergenic |
| CATGTCTGATGATCAAAGAG+AGG | 0.654475 | 2_3:+62521869 | Msa0305080:CDS |
| CTACCAAATCAGCTCCAATG+GGG | 0.729628 | 2_3:-62522707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTATCTAAATTATTT+AGG | - | chr2_3:62521628-62521647 | None:intergenic | 10.0% |
| !! | TATATATATATATATACAGG+TGG | - | chr2_3:62520458-62520477 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGATAAGGA+AGG | - | chr2_3:62520785-62520804 | None:intergenic | 15.0% |
| !! | GAAGAAAAAAAAAAAAGATA+AGG | - | chr2_3:62520789-62520808 | None:intergenic | 15.0% |
| !!! | TTTTATGAAAATGGTATATT+TGG | - | chr2_3:62521167-62521186 | None:intergenic | 15.0% |
| !!! | ATGTATTTACTATTTTATAC+AGG | + | chr2_3:62521265-62521284 | Msa0305080:intron | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | + | chr2_3:62521576-62521595 | Msa0305080:intron | 15.0% |
| !!! | TATTTTCAAAGTATATGATT+CGG | + | chr2_3:62521782-62521801 | Msa0305080:CDS | 15.0% |
| !!! | TTTTATTGGCTTATATTTAA+TGG | - | chr2_3:62522129-62522148 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATATATCTCTTT+TGG | + | chr2_3:62522325-62522344 | Msa0305080:intron | 15.0% |
| !! | TTTATATTTAAATTTGTCAC+AGG | + | chr2_3:62522474-62522493 | Msa0305080:intron | 15.0% |
| !! | ATTGAATTGAATTGAATTGA+TGG | + | chr2_3:62520679-62520698 | Msa0305080:exon | 20.0% |
| !! | TTGAATTGAATTGAATTGAT+GGG | + | chr2_3:62520680-62520699 | Msa0305080:exon | 20.0% |
| !!! | TTTTTTGCTTATAATTGAGT+CGG | - | chr2_3:62521095-62521114 | None:intergenic | 20.0% |
| !! | ACATAATTTCAGACTTATTA+AGG | - | chr2_3:62521324-62521343 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | + | chr2_3:62521464-62521483 | Msa0305080:CDS | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | + | chr2_3:62521642-62521661 | Msa0305080:intron | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | - | chr2_3:62522107-62522126 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | - | chr2_3:62522143-62522162 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAGAAACTCTTT+TGG | + | chr2_3:62522360-62522379 | Msa0305080:intron | 20.0% |
| !!! | GTTCTTTCTAATTGTAATTT+TGG | + | chr2_3:62522430-62522449 | Msa0305080:intron | 20.0% |
| !!! | ACATATTTTATAACCTTGTT+TGG | + | chr2_3:62522764-62522783 | Msa0305080:three_prime_UTR | 20.0% |
| ! | AGAAGAATTGAAATTAGAGT+AGG | - | chr2_3:62520637-62520656 | None:intergenic | 25.0% |
| ! | TGAATTGAATTGAATTGATG+GGG | + | chr2_3:62520681-62520700 | Msa0305080:exon | 25.0% |
| !! | TTTTTGCTTATAATTGAGTC+GGG | - | chr2_3:62521094-62521113 | None:intergenic | 25.0% |
| ! | AGTGCTTAAATAAATGTGTT+GGG | + | chr2_3:62521118-62521137 | Msa0305080:intron | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | - | chr2_3:62521490-62521509 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | - | chr2_3:62521566-62521585 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | + | chr2_3:62521580-62521599 | Msa0305080:intron | 25.0% |
| ! | TTCATTTATGTGAATTGTTC+AGG | + | chr2_3:62521712-62521731 | Msa0305080:intron | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | - | chr2_3:62521900-62521919 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | - | chr2_3:62522014-62522033 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | - | chr2_3:62522015-62522034 | None:intergenic | 25.0% |
| !!! | ACAAGCAAATTTTAATCAAC+AGG | - | chr2_3:62522538-62522557 | None:intergenic | 25.0% |
| ! | GAAATTGTAAACTGTATTCA+TGG | + | chr2_3:62522583-62522602 | Msa0305080:three_prime_UTR | 25.0% |
| !! | TTTTTGTGTAATAGTTCATG+TGG | + | chr2_3:62522608-62522627 | Msa0305080:three_prime_UTR | 25.0% |
| !!! | GTAGCTTTTTAGTTTGATTA+AGG | + | chr2_3:62522726-62522745 | Msa0305080:three_prime_UTR | 25.0% |
| !! | ATTTGAAACTTCCAATTTAG+TGG | + | chr2_3:62522820-62522839 | Msa0305080:three_prime_UTR | 25.0% |
| GTAGTAGTAATAAGTACGTT+TGG | + | chr2_3:62520407-62520426 | Msa0305080:five_prime_UTR | 30.0% | |
| ATTGAGATAGTTGGATTCAA+AGG | - | chr2_3:62520527-62520546 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | - | chr2_3:62520558-62520577 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | - | chr2_3:62520633-62520652 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | - | chr2_3:62520634-62520653 | None:intergenic | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | + | chr2_3:62520718-62520737 | Msa0305080:CDS | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | + | chr2_3:62520758-62520777 | Msa0305080:intron | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | + | chr2_3:62520862-62520881 | Msa0305080:intron | 30.0% | |
| ATTCATAACAAACTCAGGAA+TGG | - | chr2_3:62520966-62520985 | None:intergenic | 30.0% | |
| ! | TTTTGCTTATAATTGAGTCG+GGG | - | chr2_3:62521093-62521112 | None:intergenic | 30.0% |
| CAGTGCTTAAATAAATGTGT+TGG | + | chr2_3:62521117-62521136 | Msa0305080:intron | 30.0% | |
| AACATTAAGCAATCAATGCA+AGG | - | chr2_3:62521206-62521225 | None:intergenic | 30.0% | |
| !!! | GTACTACTGTTTTTTAGAGA+CGG | - | chr2_3:62521383-62521402 | None:intergenic | 30.0% |
| ! | AAAACGTACGTTCAACTTTT+TGG | - | chr2_3:62521527-62521546 | None:intergenic | 30.0% |
| AATTGTTCAGGCCTTTAATT+AGG | + | chr2_3:62521724-62521743 | Msa0305080:intron | 30.0% | |
| ATTGTTCAGGCCTTTAATTA+GGG | + | chr2_3:62521725-62521744 | Msa0305080:intron | 30.0% | |
| CTATAAGTACCCCTAATTAA+AGG | - | chr2_3:62521738-62521757 | None:intergenic | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | + | chr2_3:62521840-62521859 | Msa0305080:CDS | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | + | chr2_3:62521962-62521981 | Msa0305080:intron | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | - | chr2_3:62521979-62521998 | None:intergenic | 30.0% | |
| ! | TTACTGTTCTTTGATTTCTC+AGG | + | chr2_3:62522220-62522239 | Msa0305080:intron | 30.0% |
| GACATTGGATGATTTCATTA+AGG | + | chr2_3:62522295-62522314 | Msa0305080:CDS | 30.0% | |
| TTAAATTTGTCACAGGTTCT+TGG | + | chr2_3:62522481-62522500 | Msa0305080:intron | 30.0% | |
| ACAAGAATCCCAAGAAAAAA+GGG | - | chr2_3:62522662-62522681 | None:intergenic | 30.0% | |
| TACAAGAATCCCAAGAAAAA+AGG | - | chr2_3:62522663-62522682 | None:intergenic | 30.0% | |
| CAAGGTTATAAAATATGTCC+AGG | - | chr2_3:62522762-62522781 | None:intergenic | 30.0% | |
| GAGATGAGAATTGAGATAGT+TGG | - | chr2_3:62520536-62520555 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | + | chr2_3:62520549-62520568 | Msa0305080:five_prime_UTR | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | + | chr2_3:62520914-62520933 | Msa0305080:CDS | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | - | chr2_3:62520971-62520990 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | + | chr2_3:62520976-62520995 | Msa0305080:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | - | chr2_3:62520989-62521008 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATATGT+AGG | + | chr2_3:62521229-62521248 | Msa0305080:intron | 35.0% | |
| GAAGATGTCCACTATATGTA+GGG | + | chr2_3:62521230-62521249 | Msa0305080:intron | 35.0% | |
| !!! | TACTGTTTTTTAGAGACGGA+GGG | - | chr2_3:62521379-62521398 | None:intergenic | 35.0% |
| GTTTGTGTACTTATTTGCAG+AGG | + | chr2_3:62521421-62521440 | Msa0305080:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | + | chr2_3:62521495-62521514 | Msa0305080:CDS | 35.0% | |
| TTGTTCAGGCCTTTAATTAG+GGG | + | chr2_3:62521726-62521745 | Msa0305080:intron | 35.0% | |
| ! | GTATATGATTCGGATCGTAA+TGG | + | chr2_3:62521792-62521811 | Msa0305080:CDS | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | + | chr2_3:62521818-62521837 | Msa0305080:CDS | 35.0% | |
| ! | TTTGATTTCTCAGGAAGTCT+TGG | + | chr2_3:62522229-62522248 | Msa0305080:intron | 35.0% |
| TTGATTTCTCAGGAAGTCTT+GGG | + | chr2_3:62522230-62522249 | Msa0305080:intron | 35.0% | |
| ! | AAAAGACTGCTACTTGACAT+TGG | + | chr2_3:62522280-62522299 | Msa0305080:CDS | 35.0% |
| !! | CATCCATTTTTACTCCAGAA+TGG | - | chr2_3:62522507-62522526 | None:intergenic | 35.0% |
| TTTCATCCTTCAAGAGAACA+GGG | - | chr2_3:62522567-62522586 | None:intergenic | 35.0% | |
| ATTTCATCCTTCAAGAGAAC+AGG | - | chr2_3:62522568-62522587 | None:intergenic | 35.0% | |
| CAAGAATCCCAAGAAAAAAG+GGG | - | chr2_3:62522661-62522680 | None:intergenic | 35.0% | |
| CTGACTCAAGTTTGAATTCA+GGG | - | chr2_3:62522792-62522811 | None:intergenic | 35.0% | |
| ! | ACTGACTCAAGTTTGAATTC+AGG | - | chr2_3:62522793-62522812 | None:intergenic | 35.0% |
| ! | TTCAGCTTGTTCCACTAAAT+TGG | - | chr2_3:62522834-62522853 | None:intergenic | 35.0% |
| AGCTGAAATGATTTCAATGC+TGG | + | chr2_3:62522847-62522866 | Msa0305080:three_prime_UTR | 35.0% | |
| ! | TTAGGAAGGAAGGGACTTTT+TGG | - | chr2_3:62520490-62520509 | None:intergenic | 40.0% |
| AAAAAGTCCCTTCCTTCCTA+AGG | + | chr2_3:62520489-62520508 | Msa0305080:five_prime_UTR | 40.0% | |
| AAAAGATAAGGAAGGACCAC+AGG | - | chr2_3:62520777-62520796 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACATATAG+TGG | - | chr2_3:62521241-62521260 | None:intergenic | 40.0% | |
| !!! | CTACTGTTTTTTAGAGACGG+AGG | - | chr2_3:62521380-62521399 | None:intergenic | 40.0% |
| TTTGCAGAGGTTACTCAAGA+TGG | + | chr2_3:62521434-62521453 | Msa0305080:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | + | chr2_3:62521441-62521460 | Msa0305080:CDS | 40.0% | |
| ! | TGATTCGGATCGTAATGGAA+AGG | + | chr2_3:62521797-62521816 | Msa0305080:CDS | 40.0% |
| CATGTCTGATGATCAAAGAG+AGG | + | chr2_3:62521869-62521888 | Msa0305080:CDS | 40.0% | |
| CCAATACAGCACAACTGAAA+AGG | - | chr2_3:62522170-62522189 | None:intergenic | 40.0% | |
| ! | CCTTTTCAGTTGTGCTGTAT+TGG | + | chr2_3:62522167-62522186 | Msa0305080:intron | 40.0% |
| !! | TGGCCATTCTGGAGTAAAAA+TGG | + | chr2_3:62522501-62522520 | Msa0305080:CDS | 40.0% |
| AGTTTACCCTGTTCTCTTGA+AGG | + | chr2_3:62522558-62522577 | Msa0305080:three_prime_UTR | 40.0% | |
| !!! | ACAGTTGTCCCCTTTTTTCT+TGG | + | chr2_3:62522650-62522669 | Msa0305080:three_prime_UTR | 40.0% |
| !!! | CAGTTGTCCCCTTTTTTCTT+GGG | + | chr2_3:62522651-62522670 | Msa0305080:three_prime_UTR | 40.0% |
| ! | GATTAAGGCTTTTGCATTCC+TGG | + | chr2_3:62522741-62522760 | Msa0305080:three_prime_UTR | 40.0% |
| TGAATTCAGGGAACCAAACA+AGG | - | chr2_3:62522780-62522799 | None:intergenic | 40.0% | |
| TGTCCACTATATGTAGGGCT+AGG | + | chr2_3:62521235-62521254 | Msa0305080:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | - | chr2_3:62522161-62522180 | None:intergenic | 45.0% |
| ATCCTGCTTCTTTCAGAACC+TGG | - | chr2_3:62522256-62522275 | None:intergenic | 45.0% | |
| TATCCCCATTGGAGCTGATT+TGG | + | chr2_3:62522704-62522723 | Msa0305080:three_prime_UTR | 45.0% | |
| CTACCAAATCAGCTCCAATG+GGG | - | chr2_3:62522710-62522729 | None:intergenic | 45.0% | |
| GCTACCAAATCAGCTCCAAT+GGG | - | chr2_3:62522711-62522730 | None:intergenic | 45.0% | |
| AGCTACCAAATCAGCTCCAA+TGG | - | chr2_3:62522712-62522731 | None:intergenic | 45.0% | |
| !! | ATATATATATATATATATAC+AGG | - | chr2_3:62520461-62520480 | None:intergenic | 5.0% |
| !!! | TTTTTTTTATTTTATGAAAA+TGG | - | chr2_3:62521176-62521195 | None:intergenic | 5.0% |
| GCAGTGTCCTTAGGAAGGAA+GGG | - | chr2_3:62520499-62520518 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | - | chr2_3:62520500-62520519 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | - | chr2_3:62520504-62520523 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | - | chr2_3:62520508-62520527 | None:intergenic | 50.0% | |
| TCACAGGTTCTTGGCCATTC+TGG | + | chr2_3:62522490-62522509 | Msa0305080:intron | 50.0% | |
| ATCAGCTCCAATGGGGATAG+TGG | - | chr2_3:62522703-62522722 | None:intergenic | 50.0% | |
| TTCTCAGGAAGTCTTGGGCC+AGG | + | chr2_3:62522235-62522254 | Msa0305080:intron | 55.0% | |
| !! | GGCCAGGTTCTGAAAGAAGC+AGG | + | chr2_3:62522251-62522270 | Msa0305080:CDS | 55.0% |
| CTTCCTGCCACTATCCCCAT+TGG | + | chr2_3:62522693-62522712 | Msa0305080:three_prime_UTR | 55.0% | |
| ! | GCTCCAATGGGGATAGTGGC+AGG | - | chr2_3:62522699-62522718 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 62520399 | 62522893 | 62520399 | ID=Msa0305080;Name=Msa0305080 |
| chr2_3 | mRNA | 62520399 | 62522893 | 62520399 | ID=Msa0305080-mRNA-1;Parent=Msa0305080;Name=Msa0305080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=194|0.83|0.85|1|0.83|0.71|7|347|168 |
| chr2_3 | exon | 62520399 | 62520570 | 62520399 | ID=Msa0305080-mRNA-1:exon:20863;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62520676 | 62520767 | 62520676 | ID=Msa0305080-mRNA-1:exon:20864;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62520873 | 62520997 | 62520873 | ID=Msa0305080-mRNA-1:exon:20865;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62521441 | 62521516 | 62521441 | ID=Msa0305080-mRNA-1:exon:20866;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62521781 | 62521890 | 62521781 | ID=Msa0305080-mRNA-1:exon:20867;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62522242 | 62522316 | 62522242 | ID=Msa0305080-mRNA-1:exon:20868;Parent=Msa0305080-mRNA-1 |
| chr2_3 | exon | 62522496 | 62522893 | 62522496 | ID=Msa0305080-mRNA-1:exon:20869;Parent=Msa0305080-mRNA-1 |
| chr2_3 | five_prime_UTR | 62520399 | 62520570 | 62520399 | ID=Msa0305080-mRNA-1:five_prime_utr;Parent=Msa0305080-mRNA-1 |
| chr2_3 | five_prime_UTR | 62520676 | 62520697 | 62520676 | ID=Msa0305080-mRNA-1:five_prime_utr;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62520698 | 62520767 | 62520698 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62520873 | 62520997 | 62520873 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62521441 | 62521516 | 62521441 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62521781 | 62521890 | 62521781 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62522242 | 62522316 | 62522242 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | CDS | 62522496 | 62522546 | 62522496 | ID=Msa0305080-mRNA-1:cds;Parent=Msa0305080-mRNA-1 |
| chr2_3 | three_prime_UTR | 62522547 | 62522893 | 62522547 | ID=Msa0305080-mRNA-1:three_prime_utr;Parent=Msa0305080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
