Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304960 | XP_003597930.2 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.80e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304960 | sp|P42322|CANB1_NAEGR | 37.500 | 168 | 91 | 3 | 1 | 156 | 1 | 166 | 6.89e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304960 | B7FH75 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 4.68e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140650 | Msa0304960 | 0.803543 | 3.315371e-49 | -8.615850e-47 |
| Msa0304960 | Msa0305080 | 0.973514 | 1.477219e-136 | -8.615850e-47 |
| Msa0304960 | Msa0341360 | 0.912475 | 1.866944e-83 | -8.615850e-47 |
| Msa0304960 | Msa0378490 | 0.841652 | 4.173726e-58 | -8.615850e-47 |
| Msa0304960 | Msa0666270 | 0.816559 | 5.195961e-52 | -8.615850e-47 |
| Msa0304960 | Msa1297510 | 0.807856 | 4.120195e-50 | -8.615850e-47 |
| Msa0304960 | Msa1417560 | 0.850635 | 1.494888e-60 | -8.615850e-47 |
| Msa0304960 | Msa1426890 | 0.801858 | 7.382243e-49 | -8.615850e-47 |
| Msa0304960 | Msa1435240 | 0.802602 | 5.191077e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304960 | MtrunA17_Chr2g0333301 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.01e-119 | 332 |
| Msa0304960 | MtrunA17_Chr4g0073661 | 69.143 | 175 | 47 | 1 | 1 | 168 | 1 | 175 | 3.36e-87 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0304960 | AT3G18430.1 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0304960 | AT3G18430.3 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0304960 | AT3G18430.2 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
Find 55 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGGTTCTTGGCCATTC+TGG | 0.182957 | 2_3:+62342472 | Msa0304960:intron |
| TTCAGCTTGTTCCACTAAAT+TGG | 0.223800 | 2_3:-62342813 | None:intergenic |
| TGTACTAAATGCAGATAAAA+AGG | 0.239607 | 2_3:-62341469 | None:intergenic |
| GACATTGGATGATTTCATTA+AGG | 0.296420 | 2_3:+62342277 | Msa0304960:CDS |
| ATTTGAAACTTCCAATTTAG+TGG | 0.305172 | 2_3:+62342802 | Msa0304960:three_prime_UTR |
| ACTGACTCAAGTTTGAATTC+AGG | 0.314102 | 2_3:-62342772 | None:intergenic |
| TCATCTCCTCATATCATATC+AGG | 0.315446 | 2_3:+62340534 | Msa0304960:five_prime_UTR |
| TATCCCCATTGGAGCTGATT+TGG | 0.321972 | 2_3:+62342686 | Msa0304960:three_prime_UTR |
| TTAAATTTGTCACAGGTTCT+TGG | 0.342309 | 2_3:+62342463 | Msa0304960:intron |
| AGTTTACCCTGTTCTCTTGA+AGG | 0.361059 | 2_3:+62342540 | Msa0304960:three_prime_UTR |
| TTTGATTTCTCAGGAAGTCT+TGG | 0.366861 | 2_3:+62342211 | Msa0304960:intron |
| ATTTCATCCTTCAAGAGAAC+AGG | 0.368655 | 2_3:-62342547 | None:intergenic |
| TTGATTTCTCAGGAAGTCTT+GGG | 0.378929 | 2_3:+62342212 | Msa0304960:intron |
| AGGTTACTCAAGATGGTTGA+TGG | 0.393812 | 2_3:+62341423 | Msa0304960:CDS |
| TGTTATGAATCCACTTTCTC+AGG | 0.398536 | 2_3:+62340963 | Msa0304960:CDS |
| TCATGTGAACTTTGGTTGAT+TGG | 0.404851 | 2_3:-62342857 | None:intergenic |
| GGTGTCTTTCAAAGACATAT+TGG | 0.407546 | 2_3:+62341800 | Msa0304960:CDS |
| ATTTGATTCAGTTTCTCAAC+AGG | 0.411656 | 2_3:+62340849 | Msa0304960:intron |
| CTTCCTGCCACTATCCCCAT+TGG | 0.413036 | 2_3:+62342675 | Msa0304960:three_prime_UTR |
| GAGATGAGAATTGAGATAGT+TGG | 0.414312 | 2_3:-62340518 | None:intergenic |
| AGCTGAAATGATTTCAATGC+TGG | 0.422375 | 2_3:+62342829 | Msa0304960:three_prime_UTR |
| GAAATTGTAAACTGTATTCA+TGG | 0.427606 | 2_3:+62342565 | Msa0304960:three_prime_UTR |
| ATTGAATTGAATTGAATTGA+TGG | 0.428955 | 2_3:+62340665 | Msa0304960:exon |
| GAAGTTCTAAAAGATTTGTC+TGG | 0.444669 | 2_3:+62341822 | Msa0304960:CDS |
| CTGACTCAAGTTTGAATTCA+GGG | 0.454749 | 2_3:-62342771 | None:intergenic |
| ATCAGCTCCAATGGGGATAG+TGG | 0.462785 | 2_3:-62342682 | None:intergenic |
| GTAGTAGTAATAAGTACGTT+TGG | 0.472713 | 2_3:+62340392 | Msa0304960:five_prime_UTR |
| ATCCTGCTTCTTTCAGAACC+TGG | 0.474604 | 2_3:-62342235 | None:intergenic |
| TTCTCAGGAAGTCTTGGGCC+AGG | 0.475351 | 2_3:+62342217 | Msa0304960:intron |
| CAACTTGACAGAAATGCTAA+AGG | 0.478282 | 2_3:+62340901 | Msa0304960:CDS |
| TTTGCAGAGGTTACTCAAGA+TGG | 0.478552 | 2_3:+62341416 | Msa0304960:intron |
| GCTACCAAATCAGCTCCAAT+GGG | 0.484232 | 2_3:-62342690 | None:intergenic |
| AAGGTGAGTGCAGTGTCCTT+AGG | 0.488728 | 2_3:-62340490 | None:intergenic |
| TGCAGTGTCCTTAGGAAGGA+AGG | 0.494826 | 2_3:-62340482 | None:intergenic |
| TTGAATTGAATTGAATTGAT+GGG | 0.497536 | 2_3:+62340666 | Msa0304960:exon |
| ATTGAGATAGTTGGATTCAA+AGG | 0.499420 | 2_3:-62340509 | None:intergenic |
| TGATATGATACCTGAGAAAG+TGG | 0.501757 | 2_3:-62340973 | None:intergenic |
| AGAAATGTTCATGTGAACTT+TGG | 0.502754 | 2_3:-62342865 | None:intergenic |
| TCTGCATTTAGTACAAAAGC+TGG | 0.505330 | 2_3:+62341477 | Msa0304960:CDS |
| GTATATGATTCGGATCGTAA+TGG | 0.510196 | 2_3:+62341774 | Msa0304960:CDS |
| AGCTACCAAATCAGCTCCAA+TGG | 0.511364 | 2_3:-62342691 | None:intergenic |
| GCTAACTCAATATGATATTG+AGG | 0.520808 | 2_3:+62340704 | Msa0304960:CDS |
| CAAGGTTATAAAATATGTCC+AGG | 0.529066 | 2_3:-62342741 | None:intergenic |
| GCTCCAATGGGGATAGTGGC+AGG | 0.529705 | 2_3:-62342678 | None:intergenic |
| GGCCAGGTTCTGAAAGAAGC+AGG | 0.530644 | 2_3:+62342233 | Msa0304960:CDS |
| TGAATTCAGGGAACCAAACA+AGG | 0.536734 | 2_3:-62342759 | None:intergenic |
| AAAAGACTGCTACTTGACAT+TGG | 0.563411 | 2_3:+62342262 | Msa0304960:CDS |
| AGTGGATTCATAACAAACTC+AGG | 0.575670 | 2_3:-62340955 | None:intergenic |
| TGAATTGAATTGAATTGATG+GGG | 0.591092 | 2_3:+62340667 | Msa0304960:exon |
| TGAGTGCAGTGTCCTTAGGA+AGG | 0.592901 | 2_3:-62340486 | None:intergenic |
| GCAGTGTCCTTAGGAAGGAA+GGG | 0.630055 | 2_3:-62340481 | None:intergenic |
| TGATTCGGATCGTAATGGAA+AGG | 0.642698 | 2_3:+62341779 | Msa0304960:CDS |
| TTTCATCCTTCAAGAGAACA+GGG | 0.644647 | 2_3:-62342546 | None:intergenic |
| CATGTCTGATGATCAAAGAG+AGG | 0.654475 | 2_3:+62341851 | Msa0304960:CDS |
| CTACCAAATCAGCTCCAATG+GGG | 0.729628 | 2_3:-62342689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAAAAAAAAGATA+AGG | - | chr2_3:62340775-62340794 | None:intergenic | 10.0% |
| !! | TATGATTATCTAAATTATTT+AGG | - | chr2_3:62341610-62341629 | None:intergenic | 10.0% |
| !! | TATATATATATATATACAGG+TGG | - | chr2_3:62340443-62340462 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGATAAGGA+AGG | - | chr2_3:62340771-62340790 | None:intergenic | 15.0% |
| !!! | TTTTATGAAAATGGTATATT+TGG | - | chr2_3:62341150-62341169 | None:intergenic | 15.0% |
| !!! | ATGTATTTACTATTTTATAC+AGG | + | chr2_3:62341247-62341266 | Msa0304960:intron | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | + | chr2_3:62341558-62341577 | Msa0304960:intron | 15.0% |
| !!! | TATTTTCAAAGTATATGATT+CGG | + | chr2_3:62341764-62341783 | Msa0304960:CDS | 15.0% |
| !!! | TTTTATTGGCTTATATTTAA+TGG | - | chr2_3:62342111-62342130 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATATATCTCTTT+TGG | + | chr2_3:62342307-62342326 | Msa0304960:intron | 15.0% |
| !! | TTTATATTTAAATTTGTCAC+AGG | + | chr2_3:62342456-62342475 | Msa0304960:intron | 15.0% |
| !! | ATTGAATTGAATTGAATTGA+TGG | + | chr2_3:62340665-62340684 | Msa0304960:exon | 20.0% |
| !! | TTGAATTGAATTGAATTGAT+GGG | + | chr2_3:62340666-62340685 | Msa0304960:exon | 20.0% |
| !!! | TTTTTTTGCTTTAATTGAGT+CGG | - | chr2_3:62341083-62341102 | None:intergenic | 20.0% |
| !! | ACATAATTTCAGACTTATTA+AGG | - | chr2_3:62341306-62341325 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | + | chr2_3:62341446-62341465 | Msa0304960:CDS | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | + | chr2_3:62341624-62341643 | Msa0304960:intron | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | - | chr2_3:62342089-62342108 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | - | chr2_3:62342125-62342144 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAGAAACTCTTT+TGG | + | chr2_3:62342342-62342361 | Msa0304960:intron | 20.0% |
| !!! | GTTCTTTCTAATTGTAATTT+TGG | + | chr2_3:62342412-62342431 | Msa0304960:intron | 20.0% |
| !!! | ACATATTTTATAACCTTGTT+TGG | + | chr2_3:62342746-62342765 | Msa0304960:three_prime_UTR | 20.0% |
| ! | AGAAGAATTGAAATTAGAGT+AGG | - | chr2_3:62340623-62340642 | None:intergenic | 25.0% |
| ! | TGAATTGAATTGAATTGATG+GGG | + | chr2_3:62340667-62340686 | Msa0304960:exon | 25.0% |
| !!! | TTTTTTGCTTTAATTGAGTC+GGG | - | chr2_3:62341082-62341101 | None:intergenic | 25.0% |
| ! | AAGTGCTTAAATAAATGTGT+TGG | + | chr2_3:62341101-62341120 | Msa0304960:intron | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | - | chr2_3:62341472-62341491 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | - | chr2_3:62341548-62341567 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | + | chr2_3:62341562-62341581 | Msa0304960:intron | 25.0% |
| ! | TTCATTTATGTGAATTGTTC+AGG | + | chr2_3:62341694-62341713 | Msa0304960:intron | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | - | chr2_3:62341882-62341901 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | - | chr2_3:62341996-62342015 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | - | chr2_3:62341997-62342016 | None:intergenic | 25.0% |
| !!! | ACAAGCAAATTTTAATCAAC+AGG | - | chr2_3:62342520-62342539 | None:intergenic | 25.0% |
| ! | GAAATTGTAAACTGTATTCA+TGG | + | chr2_3:62342565-62342584 | Msa0304960:three_prime_UTR | 25.0% |
| !! | TTTTTGTGTAATAGTTCATG+TGG | + | chr2_3:62342590-62342609 | Msa0304960:three_prime_UTR | 25.0% |
| !!! | GTAGCTTTTTAGTTTGATTA+AGG | + | chr2_3:62342708-62342727 | Msa0304960:three_prime_UTR | 25.0% |
| !! | ATTTGAAACTTCCAATTTAG+TGG | + | chr2_3:62342802-62342821 | Msa0304960:three_prime_UTR | 25.0% |
| GTAGTAGTAATAAGTACGTT+TGG | + | chr2_3:62340392-62340411 | Msa0304960:five_prime_UTR | 30.0% | |
| ATTGAGATAGTTGGATTCAA+AGG | - | chr2_3:62340512-62340531 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | - | chr2_3:62340543-62340562 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | - | chr2_3:62340619-62340638 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | - | chr2_3:62340620-62340639 | None:intergenic | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | + | chr2_3:62340704-62340723 | Msa0304960:CDS | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | + | chr2_3:62340744-62340763 | Msa0304960:intron | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | + | chr2_3:62340849-62340868 | Msa0304960:intron | 30.0% | |
| ! | TTTTTGCTTTAATTGAGTCG+GGG | - | chr2_3:62341081-62341100 | None:intergenic | 30.0% |
| TAACATTAAGCAATCAAGCA+AGG | - | chr2_3:62341189-62341208 | None:intergenic | 30.0% | |
| !!! | GTACTACTGTTTTTTAGAGA+CGG | - | chr2_3:62341365-62341384 | None:intergenic | 30.0% |
| ! | AAAACGTACGTTCAACTTTT+TGG | - | chr2_3:62341509-62341528 | None:intergenic | 30.0% |
| AATTGTTCAGGCCTTTAATT+AGG | + | chr2_3:62341706-62341725 | Msa0304960:intron | 30.0% | |
| ATTGTTCAGGCCTTTAATTA+GGG | + | chr2_3:62341707-62341726 | Msa0304960:intron | 30.0% | |
| CTATAAGTACCCCTAATTAA+AGG | - | chr2_3:62341720-62341739 | None:intergenic | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | + | chr2_3:62341822-62341841 | Msa0304960:CDS | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | + | chr2_3:62341944-62341963 | Msa0304960:intron | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | - | chr2_3:62341961-62341980 | None:intergenic | 30.0% | |
| ! | TTACTGTTCTTTGATTTCTC+AGG | + | chr2_3:62342202-62342221 | Msa0304960:intron | 30.0% |
| GACATTGGATGATTTCATTA+AGG | + | chr2_3:62342277-62342296 | Msa0304960:CDS | 30.0% | |
| TTAAATTTGTCACAGGTTCT+TGG | + | chr2_3:62342463-62342482 | Msa0304960:intron | 30.0% | |
| ACAAGAATCCCAAGAAAAAA+GGG | - | chr2_3:62342644-62342663 | None:intergenic | 30.0% | |
| TACAAGAATCCCAAGAAAAA+AGG | - | chr2_3:62342645-62342664 | None:intergenic | 30.0% | |
| CAAGGTTATAAAATATGTCC+AGG | - | chr2_3:62342744-62342763 | None:intergenic | 30.0% | |
| GAGATGAGAATTGAGATAGT+TGG | - | chr2_3:62340521-62340540 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | + | chr2_3:62340534-62340553 | Msa0304960:five_prime_UTR | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | + | chr2_3:62340901-62340920 | Msa0304960:CDS | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | - | chr2_3:62340958-62340977 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | + | chr2_3:62340963-62340982 | Msa0304960:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | - | chr2_3:62340976-62340995 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATATGT+AGG | + | chr2_3:62341211-62341230 | Msa0304960:intron | 35.0% | |
| GAAGATGTCCACTATATGTA+GGG | + | chr2_3:62341212-62341231 | Msa0304960:intron | 35.0% | |
| !!! | TACTGTTTTTTAGAGACGGA+GGG | - | chr2_3:62341361-62341380 | None:intergenic | 35.0% |
| GTTTGTGTACTTATTTGCAG+AGG | + | chr2_3:62341403-62341422 | Msa0304960:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | + | chr2_3:62341477-62341496 | Msa0304960:CDS | 35.0% | |
| TTGTTCAGGCCTTTAATTAG+GGG | + | chr2_3:62341708-62341727 | Msa0304960:intron | 35.0% | |
| ! | GTATATGATTCGGATCGTAA+TGG | + | chr2_3:62341774-62341793 | Msa0304960:CDS | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | + | chr2_3:62341800-62341819 | Msa0304960:CDS | 35.0% | |
| ! | TTTGATTTCTCAGGAAGTCT+TGG | + | chr2_3:62342211-62342230 | Msa0304960:intron | 35.0% |
| TTGATTTCTCAGGAAGTCTT+GGG | + | chr2_3:62342212-62342231 | Msa0304960:intron | 35.0% | |
| ! | AAAAGACTGCTACTTGACAT+TGG | + | chr2_3:62342262-62342281 | Msa0304960:CDS | 35.0% |
| !! | CATCCATTTTTACTCCAGAA+TGG | - | chr2_3:62342489-62342508 | None:intergenic | 35.0% |
| TTTCATCCTTCAAGAGAACA+GGG | - | chr2_3:62342549-62342568 | None:intergenic | 35.0% | |
| ATTTCATCCTTCAAGAGAAC+AGG | - | chr2_3:62342550-62342569 | None:intergenic | 35.0% | |
| CAAGAATCCCAAGAAAAAAG+GGG | - | chr2_3:62342643-62342662 | None:intergenic | 35.0% | |
| CTGACTCAAGTTTGAATTCA+GGG | - | chr2_3:62342774-62342793 | None:intergenic | 35.0% | |
| ! | ACTGACTCAAGTTTGAATTC+AGG | - | chr2_3:62342775-62342794 | None:intergenic | 35.0% |
| ! | TTCAGCTTGTTCCACTAAAT+TGG | - | chr2_3:62342816-62342835 | None:intergenic | 35.0% |
| AGCTGAAATGATTTCAATGC+TGG | + | chr2_3:62342829-62342848 | Msa0304960:three_prime_UTR | 35.0% | |
| ! | TTAGGAAGGAAGGGACTTTT+TGG | - | chr2_3:62340475-62340494 | None:intergenic | 40.0% |
| AAAAAGTCCCTTCCTTCCTA+AGG | + | chr2_3:62340474-62340493 | Msa0304960:five_prime_UTR | 40.0% | |
| AAAAGATAAGGAAGGACCAC+AGG | - | chr2_3:62340763-62340782 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACATATAG+TGG | - | chr2_3:62341223-62341242 | None:intergenic | 40.0% | |
| !!! | CTACTGTTTTTTAGAGACGG+AGG | - | chr2_3:62341362-62341381 | None:intergenic | 40.0% |
| TTTGCAGAGGTTACTCAAGA+TGG | + | chr2_3:62341416-62341435 | Msa0304960:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | + | chr2_3:62341423-62341442 | Msa0304960:CDS | 40.0% | |
| ! | TGATTCGGATCGTAATGGAA+AGG | + | chr2_3:62341779-62341798 | Msa0304960:CDS | 40.0% |
| CATGTCTGATGATCAAAGAG+AGG | + | chr2_3:62341851-62341870 | Msa0304960:CDS | 40.0% | |
| CCAATACAGCACAACTGAAA+AGG | - | chr2_3:62342152-62342171 | None:intergenic | 40.0% | |
| ! | CCTTTTCAGTTGTGCTGTAT+TGG | + | chr2_3:62342149-62342168 | Msa0304960:intron | 40.0% |
| !! | TGGCCATTCTGGAGTAAAAA+TGG | + | chr2_3:62342483-62342502 | Msa0304960:CDS | 40.0% |
| AGTTTACCCTGTTCTCTTGA+AGG | + | chr2_3:62342540-62342559 | Msa0304960:three_prime_UTR | 40.0% | |
| !!! | ACAGTTGTCCCCTTTTTTCT+TGG | + | chr2_3:62342632-62342651 | Msa0304960:three_prime_UTR | 40.0% |
| !!! | CAGTTGTCCCCTTTTTTCTT+GGG | + | chr2_3:62342633-62342652 | Msa0304960:three_prime_UTR | 40.0% |
| ! | GATTAAGGCTTTTGCATTCC+TGG | + | chr2_3:62342723-62342742 | Msa0304960:three_prime_UTR | 40.0% |
| TGAATTCAGGGAACCAAACA+AGG | - | chr2_3:62342762-62342781 | None:intergenic | 40.0% | |
| TGTCCACTATATGTAGGGCT+AGG | + | chr2_3:62341217-62341236 | Msa0304960:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | - | chr2_3:62342143-62342162 | None:intergenic | 45.0% |
| ATCCTGCTTCTTTCAGAACC+TGG | - | chr2_3:62342238-62342257 | None:intergenic | 45.0% | |
| TATCCCCATTGGAGCTGATT+TGG | + | chr2_3:62342686-62342705 | Msa0304960:three_prime_UTR | 45.0% | |
| CTACCAAATCAGCTCCAATG+GGG | - | chr2_3:62342692-62342711 | None:intergenic | 45.0% | |
| GCTACCAAATCAGCTCCAAT+GGG | - | chr2_3:62342693-62342712 | None:intergenic | 45.0% | |
| AGCTACCAAATCAGCTCCAA+TGG | - | chr2_3:62342694-62342713 | None:intergenic | 45.0% | |
| !! | ATATATATATATATATATAC+AGG | - | chr2_3:62340446-62340465 | None:intergenic | 5.0% |
| !!! | TTTTTTTTATTTTATGAAAA+TGG | - | chr2_3:62341159-62341178 | None:intergenic | 5.0% |
| GCAGTGTCCTTAGGAAGGAA+GGG | - | chr2_3:62340484-62340503 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | - | chr2_3:62340485-62340504 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | - | chr2_3:62340489-62340508 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | - | chr2_3:62340493-62340512 | None:intergenic | 50.0% | |
| TCACAGGTTCTTGGCCATTC+TGG | + | chr2_3:62342472-62342491 | Msa0304960:intron | 50.0% | |
| ATCAGCTCCAATGGGGATAG+TGG | - | chr2_3:62342685-62342704 | None:intergenic | 50.0% | |
| TTCTCAGGAAGTCTTGGGCC+AGG | + | chr2_3:62342217-62342236 | Msa0304960:intron | 55.0% | |
| !! | GGCCAGGTTCTGAAAGAAGC+AGG | + | chr2_3:62342233-62342252 | Msa0304960:CDS | 55.0% |
| CTTCCTGCCACTATCCCCAT+TGG | + | chr2_3:62342675-62342694 | Msa0304960:three_prime_UTR | 55.0% | |
| ! | GCTCCAATGGGGATAGTGGC+AGG | - | chr2_3:62342681-62342700 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 62340384 | 62342875 | 62340384 | ID=Msa0304960;Name=Msa0304960 |
| chr2_3 | mRNA | 62340384 | 62342875 | 62340384 | ID=Msa0304960-mRNA-1;Parent=Msa0304960;Name=Msa0304960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=194|0.83|0.85|1|0.83|0.71|7|347|168 |
| chr2_3 | exon | 62340384 | 62340555 | 62340384 | ID=Msa0304960-mRNA-1:exon:20766;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62340662 | 62340753 | 62340662 | ID=Msa0304960-mRNA-1:exon:20767;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62340860 | 62340984 | 62340860 | ID=Msa0304960-mRNA-1:exon:20768;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62341423 | 62341498 | 62341423 | ID=Msa0304960-mRNA-1:exon:20769;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62341763 | 62341872 | 62341763 | ID=Msa0304960-mRNA-1:exon:20770;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62342224 | 62342298 | 62342224 | ID=Msa0304960-mRNA-1:exon:20771;Parent=Msa0304960-mRNA-1 |
| chr2_3 | exon | 62342478 | 62342875 | 62342478 | ID=Msa0304960-mRNA-1:exon:20772;Parent=Msa0304960-mRNA-1 |
| chr2_3 | five_prime_UTR | 62340384 | 62340555 | 62340384 | ID=Msa0304960-mRNA-1:five_prime_utr;Parent=Msa0304960-mRNA-1 |
| chr2_3 | five_prime_UTR | 62340662 | 62340683 | 62340662 | ID=Msa0304960-mRNA-1:five_prime_utr;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62340684 | 62340753 | 62340684 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62340860 | 62340984 | 62340860 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62341423 | 62341498 | 62341423 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62341763 | 62341872 | 62341763 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62342224 | 62342298 | 62342224 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | CDS | 62342478 | 62342528 | 62342478 | ID=Msa0304960-mRNA-1:cds;Parent=Msa0304960-mRNA-1 |
| chr2_3 | three_prime_UTR | 62342529 | 62342875 | 62342529 | ID=Msa0304960-mRNA-1:three_prime_utr;Parent=Msa0304960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
