Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341360 | XP_003597930.2 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.80e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341360 | sp|P42322|CANB1_NAEGR | 37.500 | 168 | 91 | 3 | 1 | 156 | 1 | 166 | 6.89e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0304960 | Msa0341360 | 0.912475 | 1.866944e-83 | -8.615850e-47 |
| Msa0305080 | Msa0341360 | 0.886568 | 3.054370e-72 | -8.615850e-47 |
| Msa0341360 | Msa0378490 | 0.800296 | 1.540572e-48 | -8.615850e-47 |
| Msa0341360 | Msa1417560 | 0.812659 | 3.793489e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341360 | MtrunA17_Chr2g0333301 | 94.857 | 175 | 2 | 1 | 1 | 168 | 1 | 175 | 9.01e-119 | 332 |
| Msa0341360 | MtrunA17_Chr4g0073661 | 69.143 | 175 | 47 | 1 | 1 | 168 | 1 | 175 | 3.36e-87 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0341360 | AT3G18430.1 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0341360 | AT3G18430.3 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
| Msa0341360 | AT3G18430.2 | 76.571 | 175 | 34 | 1 | 1 | 168 | 1 | 175 | 3.25e-96 | 276 |
Find 57 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGGTTCTTGGCCATTC+TGG | 0.182957 | 2_4:+62840037 | Msa0341360:intron |
| TTCAGCTTGTTCCACTAAAT+TGG | 0.223800 | 2_4:-62840378 | None:intergenic |
| GATTAAATTAGTGAAATTAT+TGG | 0.227573 | 2_4:+62837896 | Msa0341360:five_prime_UTR |
| TGTACTAAATGCAGATAAAA+AGG | 0.239607 | 2_4:-62839034 | None:intergenic |
| GACATTGGATGATTTCATTA+AGG | 0.296420 | 2_4:+62839842 | Msa0341360:CDS |
| ATTTGAAACTTCCAATTTAG+TGG | 0.305172 | 2_4:+62840367 | Msa0341360:three_prime_UTR |
| ACTGACTCAAGTTTGAATTC+AGG | 0.314102 | 2_4:-62840337 | None:intergenic |
| TCATCTCCTCATATCATATC+AGG | 0.315446 | 2_4:+62838140 | Msa0341360:five_prime_UTR |
| TATCCCCATTGGAGCTGATT+TGG | 0.321972 | 2_4:+62840251 | Msa0341360:three_prime_UTR |
| TTAAATTTGTCACAGGTTCT+TGG | 0.342309 | 2_4:+62840028 | Msa0341360:intron |
| AGTTTACCCTGTTCTCTTGA+AGG | 0.361059 | 2_4:+62840105 | Msa0341360:three_prime_UTR |
| TTTGATTTCTCAGGAAGTCT+TGG | 0.366861 | 2_4:+62839776 | Msa0341360:intron |
| ATTTCATCCTTCAAGAGAAC+AGG | 0.368655 | 2_4:-62840112 | None:intergenic |
| TTGATTTCTCAGGAAGTCTT+GGG | 0.378929 | 2_4:+62839777 | Msa0341360:intron |
| AGGTTACTCAAGATGGTTGA+TGG | 0.393812 | 2_4:+62838988 | Msa0341360:CDS |
| TGTTATGAATCCACTTTCTC+AGG | 0.398536 | 2_4:+62838568 | Msa0341360:CDS |
| TCATGTGAACTTTGGTTGAT+TGG | 0.404851 | 2_4:-62840422 | None:intergenic |
| GGTGTCTTTCAAAGACATAT+TGG | 0.407546 | 2_4:+62839365 | Msa0341360:CDS |
| ATTTGATTCAGTTTCTCAAC+AGG | 0.411656 | 2_4:+62838454 | Msa0341360:intron |
| CTTCCTGCCACTATCCCCAT+TGG | 0.413036 | 2_4:+62840240 | Msa0341360:three_prime_UTR |
| GAGATGAGAATTGAGATAGT+TGG | 0.414312 | 2_4:-62838124 | None:intergenic |
| AGCTGAAATGATTTCAATGC+TGG | 0.422375 | 2_4:+62840394 | Msa0341360:three_prime_UTR |
| GAAATTGTAAACTGTATTCA+TGG | 0.427606 | 2_4:+62840130 | Msa0341360:three_prime_UTR |
| GAAGTTCTAAAAGATTTGTC+TGG | 0.444669 | 2_4:+62839387 | Msa0341360:CDS |
| CTGACTCAAGTTTGAATTCA+GGG | 0.454749 | 2_4:-62840336 | None:intergenic |
| ATCAGCTCCAATGGGGATAG+TGG | 0.462785 | 2_4:-62840247 | None:intergenic |
| ATCCTGCTTCTTTCAGAACC+TGG | 0.474604 | 2_4:-62839800 | None:intergenic |
| TTCTCAGGAAGTCTTGGGCC+AGG | 0.475351 | 2_4:+62839782 | Msa0341360:intron |
| CAACTTGACAGAAATGCTAA+AGG | 0.478282 | 2_4:+62838506 | Msa0341360:CDS |
| TTTGCAGAGGTTACTCAAGA+TGG | 0.478552 | 2_4:+62838981 | Msa0341360:intron |
| GCTACCAAATCAGCTCCAAT+GGG | 0.484232 | 2_4:-62840255 | None:intergenic |
| ATTATTGGTATTTATTACTC+AGG | 0.487132 | 2_4:+62837911 | Msa0341360:five_prime_UTR |
| AAGGTGAGTGCAGTGTCCTT+AGG | 0.488728 | 2_4:-62838096 | None:intergenic |
| TGCAGTGTCCTTAGGAAGGA+AGG | 0.494826 | 2_4:-62838088 | None:intergenic |
| ATTGAGATAGTTGGATTCAA+AGG | 0.499420 | 2_4:-62838115 | None:intergenic |
| TGATATGATACCTGAGAAAG+TGG | 0.501757 | 2_4:-62838578 | None:intergenic |
| AGAAATGTTCATGTGAACTT+TGG | 0.502754 | 2_4:-62840430 | None:intergenic |
| TCTGCATTTAGTACAAAAGC+TGG | 0.505330 | 2_4:+62839042 | Msa0341360:CDS |
| GTATATGATTCGGATCGTAA+TGG | 0.510196 | 2_4:+62839339 | Msa0341360:CDS |
| AGCTACCAAATCAGCTCCAA+TGG | 0.511364 | 2_4:-62840256 | None:intergenic |
| GCTAACTCAATATGATATTG+AGG | 0.520808 | 2_4:+62838310 | Msa0341360:CDS |
| CAAGGTTATAAAATATGTCC+AGG | 0.529066 | 2_4:-62840306 | None:intergenic |
| GCTCCAATGGGGATAGTGGC+AGG | 0.529705 | 2_4:-62840243 | None:intergenic |
| GGCCAGGTTCTGAAAGAAGC+AGG | 0.530644 | 2_4:+62839798 | Msa0341360:CDS |
| TGAATTCAGGGAACCAAACA+AGG | 0.536734 | 2_4:-62840324 | None:intergenic |
| GTAACAGTGAATTGAATTGA+TGG | 0.537806 | 2_4:+62838271 | Msa0341360:intron |
| ATTGGTATTTATTACTCAGG+AGG | 0.553881 | 2_4:+62837914 | Msa0341360:five_prime_UTR |
| TAACAGTGAATTGAATTGAT+GGG | 0.554336 | 2_4:+62838272 | Msa0341360:intron |
| AAAAGACTGCTACTTGACAT+TGG | 0.563411 | 2_4:+62839827 | Msa0341360:CDS |
| AGTGGATTCATAACAAACTC+AGG | 0.575670 | 2_4:-62838560 | None:intergenic |
| TGAGTGCAGTGTCCTTAGGA+AGG | 0.592901 | 2_4:-62838092 | None:intergenic |
| GCAGTGTCCTTAGGAAGGAA+GGG | 0.630055 | 2_4:-62838087 | None:intergenic |
| TGATTCGGATCGTAATGGAA+AGG | 0.642698 | 2_4:+62839344 | Msa0341360:CDS |
| TTTCATCCTTCAAGAGAACA+GGG | 0.644647 | 2_4:-62840111 | None:intergenic |
| CATGTCTGATGATCAAAGAG+AGG | 0.654475 | 2_4:+62839416 | Msa0341360:CDS |
| AACAGTGAATTGAATTGATG+GGG | 0.680985 | 2_4:+62838273 | Msa0341360:intron |
| CTACCAAATCAGCTCCAATG+GGG | 0.729628 | 2_4:-62840254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATACATG+TGG | - | chr2_4:62838033-62838052 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAAAAAAGATA+AGG | - | chr2_4:62838381-62838400 | None:intergenic | 10.0% |
| !! | TATGATTATCTAAATTATTT+AGG | - | chr2_4:62839175-62839194 | None:intergenic | 10.0% |
| !! | GATTAAATTAGTGAAATTAT+TGG | + | chr2_4:62837896-62837915 | Msa0341360:five_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAAGATAAGGA+AGG | - | chr2_4:62838377-62838396 | None:intergenic | 15.0% |
| !!! | ATGTATTTACTATTTTATAC+AGG | + | chr2_4:62838815-62838834 | Msa0341360:intron | 15.0% |
| !!! | TTTTATTCTTTATTAGTGTT+TGG | + | chr2_4:62839123-62839142 | Msa0341360:intron | 15.0% |
| !!! | TATTTTCAAAGTATATGATT+CGG | + | chr2_4:62839329-62839348 | Msa0341360:CDS | 15.0% |
| !!! | TTTTATTGGCTTATATTTAA+TGG | - | chr2_4:62839676-62839695 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATATATCTCTTT+TGG | + | chr2_4:62839872-62839891 | Msa0341360:intron | 15.0% |
| !! | TTTATATTTAAATTTGTCAC+AGG | + | chr2_4:62840021-62840040 | Msa0341360:intron | 15.0% |
| !! | ATTATTGGTATTTATTACTC+AGG | + | chr2_4:62837911-62837930 | Msa0341360:five_prime_UTR | 20.0% |
| !! | ACACATTTATTTAATTGAGT+CGG | - | chr2_4:62838691-62838710 | None:intergenic | 20.0% |
| !! | ACTCAATTAAATAAATGTGT+TGG | + | chr2_4:62838691-62838710 | Msa0341360:intron | 20.0% |
| !! | ACATAATTTCAGACTTATTA+AGG | - | chr2_4:62838874-62838893 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAAAGACTTTG+TGG | + | chr2_4:62839011-62839030 | Msa0341360:CDS | 20.0% |
| !! | ATCATAAATTAGAAGATTTC+AGG | + | chr2_4:62839189-62839208 | Msa0341360:intron | 20.0% |
| !! | GAAATGAAATATTCGTATAT+AGG | - | chr2_4:62839654-62839673 | None:intergenic | 20.0% |
| !!! | TGTGGAAAAAAGTTTTTTAT+TGG | - | chr2_4:62839690-62839709 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAGAAACTCTTT+TGG | + | chr2_4:62839907-62839926 | Msa0341360:intron | 20.0% |
| !!! | GTTCTTTCTAATTGTAATTT+TGG | + | chr2_4:62839977-62839996 | Msa0341360:intron | 20.0% |
| !!! | ACATATTTTATAACCTTGTT+TGG | + | chr2_4:62840311-62840330 | Msa0341360:three_prime_UTR | 20.0% |
| ! | TAACAGTGAATTGAATTGAT+GGG | + | chr2_4:62838272-62838291 | Msa0341360:intron | 25.0% |
| ! | ACATTTATTTAATTGAGTCG+GGG | - | chr2_4:62838689-62838708 | None:intergenic | 25.0% |
| ! | CACATTTATTTAATTGAGTC+GGG | - | chr2_4:62838690-62838709 | None:intergenic | 25.0% |
| !!! | AAAGTACTGTTTTTTAGAGA+CGG | - | chr2_4:62838933-62838952 | None:intergenic | 25.0% |
| ! | TGTACTAAATGCAGATAAAA+AGG | - | chr2_4:62839037-62839056 | None:intergenic | 25.0% |
| !! | AAGAATAAAATCTGAAGCAA+TGG | - | chr2_4:62839113-62839132 | None:intergenic | 25.0% |
| ! | ATTCTTTATTAGTGTTTGGA+TGG | + | chr2_4:62839127-62839146 | Msa0341360:intron | 25.0% |
| ! | TTCATTTATGTGAATTGTTC+AGG | + | chr2_4:62839259-62839278 | Msa0341360:intron | 25.0% |
| !! | TACAGAAGCATATAGTTATT+TGG | - | chr2_4:62839447-62839466 | None:intergenic | 25.0% |
| ! | AGTATATCAAACTCAACATA+GGG | - | chr2_4:62839561-62839580 | None:intergenic | 25.0% |
| ! | TAGTATATCAAACTCAACAT+AGG | - | chr2_4:62839562-62839581 | None:intergenic | 25.0% |
| !!! | ACAAGCAAATTTTAATCAAC+AGG | - | chr2_4:62840085-62840104 | None:intergenic | 25.0% |
| ! | GAAATTGTAAACTGTATTCA+TGG | + | chr2_4:62840130-62840149 | Msa0341360:three_prime_UTR | 25.0% |
| !! | TTTTTGTGTAATAGTTCATG+TGG | + | chr2_4:62840155-62840174 | Msa0341360:three_prime_UTR | 25.0% |
| !!! | GTAGCTTTTTAGTTTGATTA+AGG | + | chr2_4:62840273-62840292 | Msa0341360:three_prime_UTR | 25.0% |
| !! | ATTTGAAACTTCCAATTTAG+TGG | + | chr2_4:62840367-62840386 | Msa0341360:three_prime_UTR | 25.0% |
| ATTGGTATTTATTACTCAGG+AGG | + | chr2_4:62837914-62837933 | Msa0341360:five_prime_UTR | 30.0% | |
| ATTGAGATAGTTGGATTCAA+AGG | - | chr2_4:62838118-62838137 | None:intergenic | 30.0% | |
| GAAAAACCTGATATGATATG+AGG | - | chr2_4:62838149-62838168 | None:intergenic | 30.0% | |
| GAATTGAAATTAGAGTAGGA+GGG | - | chr2_4:62838215-62838234 | None:intergenic | 30.0% | |
| AGAATTGAAATTAGAGTAGG+AGG | - | chr2_4:62838216-62838235 | None:intergenic | 30.0% | |
| GCAAGAATTGAAATTAGAGT+AGG | - | chr2_4:62838219-62838238 | None:intergenic | 30.0% | |
| GTAACAGTGAATTGAATTGA+TGG | + | chr2_4:62838271-62838290 | Msa0341360:intron | 30.0% | |
| AACAGTGAATTGAATTGATG+GGG | + | chr2_4:62838273-62838292 | Msa0341360:intron | 30.0% | |
| GCTAACTCAATATGATATTG+AGG | + | chr2_4:62838310-62838329 | Msa0341360:CDS | 30.0% | |
| AATCATTTATGTATGTCCTG+TGG | + | chr2_4:62838350-62838369 | Msa0341360:intron | 30.0% | |
| ATTTGATTCAGTTTCTCAAC+AGG | + | chr2_4:62838454-62838473 | Msa0341360:intron | 30.0% | |
| ! | AAAACGTACGTTCAACTTTT+TGG | - | chr2_4:62839074-62839093 | None:intergenic | 30.0% |
| AATTGTTCAGGCCTTTAATT+AGG | + | chr2_4:62839271-62839290 | Msa0341360:intron | 30.0% | |
| ATTGTTCAGGCCTTTAATTA+GGG | + | chr2_4:62839272-62839291 | Msa0341360:intron | 30.0% | |
| CTATAAGTACCCCTAATTAA+AGG | - | chr2_4:62839285-62839304 | None:intergenic | 30.0% | |
| !! | GAAGTTCTAAAAGATTTGTC+TGG | + | chr2_4:62839387-62839406 | Msa0341360:CDS | 30.0% |
| AGCAAAGTAAGTTTCCATTA+AGG | + | chr2_4:62839509-62839528 | Msa0341360:intron | 30.0% | |
| TAACAATTGATGCACCTTAA+TGG | - | chr2_4:62839526-62839545 | None:intergenic | 30.0% | |
| ! | TTACTGTTCTTTGATTTCTC+AGG | + | chr2_4:62839767-62839786 | Msa0341360:intron | 30.0% |
| GACATTGGATGATTTCATTA+AGG | + | chr2_4:62839842-62839861 | Msa0341360:CDS | 30.0% | |
| TTAAATTTGTCACAGGTTCT+TGG | + | chr2_4:62840028-62840047 | Msa0341360:intron | 30.0% | |
| ACAAGAATCCCAAGAAAAAA+GGG | - | chr2_4:62840209-62840228 | None:intergenic | 30.0% | |
| TACAAGAATCCCAAGAAAAA+AGG | - | chr2_4:62840210-62840229 | None:intergenic | 30.0% | |
| CAAGGTTATAAAATATGTCC+AGG | - | chr2_4:62840309-62840328 | None:intergenic | 30.0% | |
| GAGATGAGAATTGAGATAGT+TGG | - | chr2_4:62838127-62838146 | None:intergenic | 35.0% | |
| TCATCTCCTCATATCATATC+AGG | + | chr2_4:62838140-62838159 | Msa0341360:five_prime_UTR | 35.0% | |
| CAACTTGACAGAAATGCTAA+AGG | + | chr2_4:62838506-62838525 | Msa0341360:CDS | 35.0% | |
| ! | AGTGGATTCATAACAAACTC+AGG | - | chr2_4:62838563-62838582 | None:intergenic | 35.0% |
| TGTTATGAATCCACTTTCTC+AGG | + | chr2_4:62838568-62838587 | Msa0341360:CDS | 35.0% | |
| TGATATGATACCTGAGAAAG+TGG | - | chr2_4:62838581-62838600 | None:intergenic | 35.0% | |
| TAAGCAATCAAAGCATAGAG+TGG | - | chr2_4:62838751-62838770 | None:intergenic | 35.0% | |
| AGAAGATGTCCACTATATGT+AGG | + | chr2_4:62838779-62838798 | Msa0341360:intron | 35.0% | |
| GAAGATGTCCACTATATGTA+GGG | + | chr2_4:62838780-62838799 | Msa0341360:intron | 35.0% | |
| !!! | TACTGTTTTTTAGAGACGGA+GGG | - | chr2_4:62838929-62838948 | None:intergenic | 35.0% |
| GTTTGTGTACTTATTTGCAG+AGG | + | chr2_4:62838968-62838987 | Msa0341360:intron | 35.0% | |
| TCTGCATTTAGTACAAAAGC+TGG | + | chr2_4:62839042-62839061 | Msa0341360:CDS | 35.0% | |
| TTGTTCAGGCCTTTAATTAG+GGG | + | chr2_4:62839273-62839292 | Msa0341360:intron | 35.0% | |
| ! | GTATATGATTCGGATCGTAA+TGG | + | chr2_4:62839339-62839358 | Msa0341360:CDS | 35.0% |
| GGTGTCTTTCAAAGACATAT+TGG | + | chr2_4:62839365-62839384 | Msa0341360:CDS | 35.0% | |
| ! | TTTGATTTCTCAGGAAGTCT+TGG | + | chr2_4:62839776-62839795 | Msa0341360:intron | 35.0% |
| TTGATTTCTCAGGAAGTCTT+GGG | + | chr2_4:62839777-62839796 | Msa0341360:intron | 35.0% | |
| ! | AAAAGACTGCTACTTGACAT+TGG | + | chr2_4:62839827-62839846 | Msa0341360:CDS | 35.0% |
| !! | CATCCATTTTTACTCCAGAA+TGG | - | chr2_4:62840054-62840073 | None:intergenic | 35.0% |
| TTTCATCCTTCAAGAGAACA+GGG | - | chr2_4:62840114-62840133 | None:intergenic | 35.0% | |
| ATTTCATCCTTCAAGAGAAC+AGG | - | chr2_4:62840115-62840134 | None:intergenic | 35.0% | |
| CAAGAATCCCAAGAAAAAAG+GGG | - | chr2_4:62840208-62840227 | None:intergenic | 35.0% | |
| CTGACTCAAGTTTGAATTCA+GGG | - | chr2_4:62840339-62840358 | None:intergenic | 35.0% | |
| ! | ACTGACTCAAGTTTGAATTC+AGG | - | chr2_4:62840340-62840359 | None:intergenic | 35.0% |
| ! | TTCAGCTTGTTCCACTAAAT+TGG | - | chr2_4:62840381-62840400 | None:intergenic | 35.0% |
| AGCTGAAATGATTTCAATGC+TGG | + | chr2_4:62840394-62840413 | Msa0341360:three_prime_UTR | 35.0% | |
| AGGGCAGTAATAAGTACGTT+TGG | + | chr2_4:62837982-62838001 | Msa0341360:intron | 40.0% | |
| ! | TTAGGAAGGAAGGGACTTTT+TGG | - | chr2_4:62838081-62838100 | None:intergenic | 40.0% |
| AAAAAGTCCCTTCCTTCCTA+AGG | + | chr2_4:62838080-62838099 | Msa0341360:intron | 40.0% | |
| AAAAGATAAGGAAGGACCAC+AGG | - | chr2_4:62838369-62838388 | None:intergenic | 40.0% | |
| TATCCTAGCCCTACATATAG+TGG | - | chr2_4:62838791-62838810 | None:intergenic | 40.0% | |
| !!! | GTACTGTTTTTTAGAGACGG+AGG | - | chr2_4:62838930-62838949 | None:intergenic | 40.0% |
| TTTGCAGAGGTTACTCAAGA+TGG | + | chr2_4:62838981-62839000 | Msa0341360:intron | 40.0% | |
| AGGTTACTCAAGATGGTTGA+TGG | + | chr2_4:62838988-62839007 | Msa0341360:CDS | 40.0% | |
| ! | TGATTCGGATCGTAATGGAA+AGG | + | chr2_4:62839344-62839363 | Msa0341360:CDS | 40.0% |
| CATGTCTGATGATCAAAGAG+AGG | + | chr2_4:62839416-62839435 | Msa0341360:CDS | 40.0% | |
| CCAATACAGCACAACTGAAA+AGG | - | chr2_4:62839717-62839736 | None:intergenic | 40.0% | |
| ! | CCTTTTCAGTTGTGCTGTAT+TGG | + | chr2_4:62839714-62839733 | Msa0341360:intron | 40.0% |
| !! | TGGCCATTCTGGAGTAAAAA+TGG | + | chr2_4:62840048-62840067 | Msa0341360:CDS | 40.0% |
| AGTTTACCCTGTTCTCTTGA+AGG | + | chr2_4:62840105-62840124 | Msa0341360:three_prime_UTR | 40.0% | |
| !!! | ACAGTTGTCCCCTTTTTTCT+TGG | + | chr2_4:62840197-62840216 | Msa0341360:three_prime_UTR | 40.0% |
| !!! | CAGTTGTCCCCTTTTTTCTT+GGG | + | chr2_4:62840198-62840217 | Msa0341360:three_prime_UTR | 40.0% |
| ! | GATTAAGGCTTTTGCATTCC+TGG | + | chr2_4:62840288-62840307 | Msa0341360:three_prime_UTR | 40.0% |
| TGAATTCAGGGAACCAAACA+AGG | - | chr2_4:62840327-62840346 | None:intergenic | 40.0% | |
| ! | TCCGTCGAAGAGAAGAGTAT+AGG | + | chr2_4:62837962-62837981 | Msa0341360:intron | 45.0% |
| CCCTATACTCTTCTCTTCGA+CGG | - | chr2_4:62837966-62837985 | None:intergenic | 45.0% | |
| ! | CCGTCGAAGAGAAGAGTATA+GGG | + | chr2_4:62837963-62837982 | Msa0341360:intron | 45.0% |
| TGTCCACTATATGTAGGGCT+AGG | + | chr2_4:62838785-62838804 | Msa0341360:intron | 45.0% | |
| ! | CACAACTGAAAAGGTGTGTG+TGG | - | chr2_4:62839708-62839727 | None:intergenic | 45.0% |
| ATCCTGCTTCTTTCAGAACC+TGG | - | chr2_4:62839803-62839822 | None:intergenic | 45.0% | |
| TATCCCCATTGGAGCTGATT+TGG | + | chr2_4:62840251-62840270 | Msa0341360:three_prime_UTR | 45.0% | |
| CTACCAAATCAGCTCCAATG+GGG | - | chr2_4:62840257-62840276 | None:intergenic | 45.0% | |
| GCTACCAAATCAGCTCCAAT+GGG | - | chr2_4:62840258-62840277 | None:intergenic | 45.0% | |
| AGCTACCAAATCAGCTCCAA+TGG | - | chr2_4:62840259-62840278 | None:intergenic | 45.0% | |
| GCAGTGTCCTTAGGAAGGAA+GGG | - | chr2_4:62838090-62838109 | None:intergenic | 50.0% | |
| TGCAGTGTCCTTAGGAAGGA+AGG | - | chr2_4:62838091-62838110 | None:intergenic | 50.0% | |
| TGAGTGCAGTGTCCTTAGGA+AGG | - | chr2_4:62838095-62838114 | None:intergenic | 50.0% | |
| AAGGTGAGTGCAGTGTCCTT+AGG | - | chr2_4:62838099-62838118 | None:intergenic | 50.0% | |
| TCACAGGTTCTTGGCCATTC+TGG | + | chr2_4:62840037-62840056 | Msa0341360:intron | 50.0% | |
| ATCAGCTCCAATGGGGATAG+TGG | - | chr2_4:62840250-62840269 | None:intergenic | 50.0% | |
| TTCTCAGGAAGTCTTGGGCC+AGG | + | chr2_4:62839782-62839801 | Msa0341360:intron | 55.0% | |
| !! | GGCCAGGTTCTGAAAGAAGC+AGG | + | chr2_4:62839798-62839817 | Msa0341360:CDS | 55.0% |
| CTTCCTGCCACTATCCCCAT+TGG | + | chr2_4:62840240-62840259 | Msa0341360:three_prime_UTR | 55.0% | |
| ! | GCTCCAATGGGGATAGTGGC+AGG | - | chr2_4:62840246-62840265 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62837868 | 62840440 | 62837868 | ID=Msa0341360;Name=Msa0341360 |
| chr2_4 | mRNA | 62837868 | 62840440 | 62837868 | ID=Msa0341360-mRNA-1;Parent=Msa0341360;Name=Msa0341360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=180|0.85|0.87|1|0.71|0.62|8|347|168 |
| chr2_4 | exon | 62837868 | 62837958 | 62837868 | ID=Msa0341360-mRNA-1:exon:20038;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62838085 | 62838161 | 62838085 | ID=Msa0341360-mRNA-1:exon:20039;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62838278 | 62838359 | 62838278 | ID=Msa0341360-mRNA-1:exon:20040;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62838465 | 62838589 | 62838465 | ID=Msa0341360-mRNA-1:exon:20041;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62838988 | 62839063 | 62838988 | ID=Msa0341360-mRNA-1:exon:20042;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62839328 | 62839437 | 62839328 | ID=Msa0341360-mRNA-1:exon:20043;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62839789 | 62839863 | 62839789 | ID=Msa0341360-mRNA-1:exon:20044;Parent=Msa0341360-mRNA-1 |
| chr2_4 | exon | 62840043 | 62840440 | 62840043 | ID=Msa0341360-mRNA-1:exon:20045;Parent=Msa0341360-mRNA-1 |
| chr2_4 | five_prime_UTR | 62837868 | 62837958 | 62837868 | ID=Msa0341360-mRNA-1:five_prime_utr;Parent=Msa0341360-mRNA-1 |
| chr2_4 | five_prime_UTR | 62838085 | 62838161 | 62838085 | ID=Msa0341360-mRNA-1:five_prime_utr;Parent=Msa0341360-mRNA-1 |
| chr2_4 | five_prime_UTR | 62838278 | 62838289 | 62838278 | ID=Msa0341360-mRNA-1:five_prime_utr;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62838290 | 62838359 | 62838290 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62838465 | 62838589 | 62838465 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62838988 | 62839063 | 62838988 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62839328 | 62839437 | 62839328 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62839789 | 62839863 | 62839789 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | CDS | 62840043 | 62840093 | 62840043 | ID=Msa0341360-mRNA-1:cds;Parent=Msa0341360-mRNA-1 |
| chr2_4 | three_prime_UTR | 62840094 | 62840440 | 62840094 | ID=Msa0341360-mRNA-1:three_prime_utr;Parent=Msa0341360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
