AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0306600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306600 MtrunA17_Chr8g0387481 97.947 487 10 0 1 487 1 487 0.0 1005
Msa0306600 MtrunA17_Chr7g0248681 65.784 491 156 4 1 486 1 484 0.0 677
Msa0306600 MtrunA17_Chr8g0348351 64.583 480 159 3 10 486 9 480 0.0 669
Msa0306600 MtrunA17_Chr4g0054371 55.011 449 194 3 10 450 2 450 0.0 544
Msa0306600 MtrunA17_Chr3g0135251 53.571 448 199 4 11 451 1 446 0.0 528
Msa0306600 MtrunA17_Chr5g0400831 54.503 433 191 4 10 436 2 434 0.0 527
Msa0306600 MtrunA17_Chr8g0389311 56.000 425 178 2 12 436 12 427 0.0 516
Msa0306600 MtrunA17_Chr8g0389321 56.000 425 178 2 12 436 12 427 0.0 516
Msa0306600 MtrunA17_Chr6g0488041 55.079 443 192 5 1 441 1 438 0.0 516
Msa0306600 MtrunA17_Chr6g0475681 42.353 425 241 2 12 435 104 525 5.73e-136 402
Msa0306600 MtrunA17_Chr5g0398431 40.541 407 239 1 25 431 85 488 5.42e-120 360
Msa0306600 MtrunA17_Chr8g0345201 23.077 351 243 12 94 422 158 503 4.39e-17 84.0
Msa0306600 MtrunA17_Chr5g0412871 24.257 404 265 17 39 408 42 438 4.17e-16 80.9
Msa0306600 MtrunA17_Chr7g0267911 22.346 358 235 15 95 436 135 465 1.07e-15 79.3
Msa0306600 MtrunA17_Chr4g0004131 22.599 354 234 14 87 432 61 382 6.77e-15 76.3
Msa0306600 MtrunA17_Chr2g0324801 23.529 374 228 16 89 438 42 381 1.01e-13 72.8
Msa0306600 MtrunA17_Chr3g0114811 23.559 399 241 16 46 422 86 442 1.97e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306600 AT4G11280.1 66.191 491 143 4 11 487 14 495 0.0 661
Msa0306600 AT3G61510.1 62.062 485 170 3 10 485 9 488 0.0 645
Msa0306600 AT1G01480.1 60.241 498 183 6 1 485 1 496 0.0 643
Msa0306600 AT4G37770.1 58.275 429 172 3 11 435 3 428 0.0 550
Msa0306600 AT2G22810.1 55.349 430 190 2 12 439 4 433 0.0 518
Msa0306600 AT5G65800.1 54.128 436 197 2 12 445 4 438 2.39e-180 514
Msa0306600 AT3G49700.1 54.005 437 198 2 12 446 4 439 3.07e-180 513
Msa0306600 AT4G08040.1 53.613 429 197 2 11 439 1 427 8.49e-180 512
Msa0306600 AT4G26200.1 56.000 425 185 2 12 435 18 441 5.27e-179 509
Msa0306600 AT1G01480.2 58.163 392 149 6 107 485 1 390 5.90e-168 479
Msa0306600 AT5G51690.1 42.822 411 231 2 25 434 82 489 1.23e-125 375
Msa0306600 AT1G62960.1 42.615 413 227 6 22 432 143 547 1.07e-124 375
Msa0306600 AT5G51690.2 44.068 354 195 1 79 432 14 364 3.99e-114 341
Msa0306600 AT2G22250.1 24.533 375 229 16 80 432 74 416 7.83e-20 92.0
Msa0306600 AT2G22250.3 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa0306600 AT2G22250.2 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa0306600 AT1G23310.2 25.000 348 226 15 87 408 100 438 3.94e-18 87.0
Msa0306600 AT1G23310.1 25.000 348 226 15 87 408 100 438 4.25e-18 87.4
Msa0306600 AT1G70580.4 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa0306600 AT1G70580.2 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa0306600 AT1G70580.3 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa0306600 AT1G70580.1 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa0306600 AT1G17290.1 25.952 289 196 10 94 368 177 461 1.42e-17 85.9
Msa0306600 AT1G72330.1 23.562 365 247 13 94 434 174 530 1.32e-16 82.8
Msa0306600 AT5G36160.1 22.826 368 239 14 89 440 79 417 3.30e-15 78.2
Msa0306600 AT1G72330.3 22.513 382 251 13 90 434 170 543 6.65e-15 77.8
Msa0306600 AT1G72330.2 26.860 242 162 8 90 323 170 404 1.64e-14 75.9
Msa0306600 AT1G77670.1 22.980 396 255 15 59 432 66 433 1.17e-11 67.0

Find 116 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGATTTGGTTCAAAAT+TGG 0.180902 2_3:+65633048 Msa0306600:CDS
CGTATATTTCATCGCTTATT+AGG 0.237518 2_3:-65634294 None:intergenic
TAGACTATAGTAATTAATAA+TGG 0.275952 2_3:+65632733 Msa0306600:exon
AGAGTACAAATTGAGGCTTC+TGG 0.284872 2_3:-65633083 None:intergenic
GATTTGTTGATTTATTAGTT+TGG 0.286489 2_3:+65635103 Msa0306600:three_prime_UTR
TTTGCACTTTCGCAGATAAC+TGG 0.298899 2_3:-65634100 None:intergenic
AGAGATTTGAGGTGGAGAAC+AGG 0.302380 2_3:+65634064 Msa0306600:CDS
CAATGTCTAGGAATGAAGTA+TGG 0.312104 2_3:-65632576 None:intergenic
ATTTGTTGATTTATTAGTTT+GGG 0.312718 2_3:+65635104 Msa0306600:three_prime_UTR
TTAGTAGTCCAAATATAAAA+AGG 0.318247 2_3:-65632491 None:intergenic
TTTCCAGCTTACTACTGATT+TGG 0.334888 2_3:+65633037 Msa0306600:intron
GCGCGCAAAATGTCGAGTTT+TGG 0.341792 2_3:+65634496 Msa0306600:CDS
CACCACAAACCCATGTGATT+TGG 0.343608 2_3:-65635181 None:intergenic
AGCTACATTTGAATCAGAAT+TGG 0.358107 2_3:+65634723 Msa0306600:CDS
AGACTATAGTAATTAATAAT+GGG 0.359076 2_3:+65632734 Msa0306600:exon
ATTTGTGGTTCAGAATAATA+AGG 0.368943 2_3:+65634891 Msa0306600:CDS
TAATAGAATTTGTAATTGTA+AGG 0.374758 2_3:+65635212 Msa0306600:three_prime_UTR
TCCTCATGGTGTTATCCAAA+TGG 0.374967 2_3:+65632883 Msa0306600:CDS
AGTACATAATTTCAAAGAAA+TGG 0.381772 2_3:+65633112 Msa0306600:CDS
TCAGAATAATAAGGAGGTTA+TGG 0.384538 2_3:+65634900 Msa0306600:CDS
TTCTGTTACTCAAATTTGTA+AGG 0.384841 2_3:+65635269 Msa0306600:three_prime_UTR
AACACAGACACAATACTTGA+TGG 0.385707 2_3:+65634528 Msa0306600:CDS
GCCTCAATTTGTACTCTAGA+AGG 0.386175 2_3:+65633089 Msa0306600:CDS
ACAAGAGGTGACTGAGGAAA+TGG 0.387130 2_3:-65635018 None:intergenic
TGTTGTGTTCCTTTAATGTT+GGG 0.388781 2_3:+65635135 Msa0306600:three_prime_UTR
TCAGCTATGCTTATGAAACT+TGG 0.389874 2_3:-65634337 None:intergenic
TAAACAATTAATTCCAACTT+TGG 0.390119 2_3:-65634647 None:intergenic
TCATTTCATTGTTCTGAGCC+AGG 0.391963 2_3:+65634799 Msa0306600:CDS
ACTAGTGGATTAACCAAAGT+TGG 0.392203 2_3:+65634634 Msa0306600:CDS
GAGTACAAATTGAGGCTTCT+GGG 0.396801 2_3:-65633082 None:intergenic
GAAACATCATCTTACTTTGA+TGG 0.397210 2_3:+65632818 Msa0306600:CDS
AATGGGTCTTGCAGAGAATC+AGG 0.399230 2_3:+65632901 Msa0306600:CDS
GATTCTCTGCAAGACCCATT+TGG 0.400674 2_3:-65632898 None:intergenic
GTGCCTACTCCTTACTATCC+AGG 0.402112 2_3:+65633405 Msa0306600:CDS
GGATTTGAGAGGACTTCTTA+AGG 0.406992 2_3:+65634699 Msa0306600:CDS
TAATTGTAAGGTTATTTGTT+TGG 0.410239 2_3:+65635224 Msa0306600:three_prime_UTR
TTGAATCAGAATTGGAACTT+TGG 0.414840 2_3:+65634731 Msa0306600:CDS
CGGTCCATAACTGTGCCTAA+TGG 0.421374 2_3:-65634223 None:intergenic
CAACGGTTCTTAATGTGCTT+CGG 0.426255 2_3:-65634243 None:intergenic
ATGTTGTGTTCCTTTAATGT+TGG 0.439273 2_3:+65635134 Msa0306600:three_prime_UTR
AACTGTGCCTAATGGATTTG+AGG 0.440159 2_3:-65634215 None:intergenic
GTGATGAGTGGTGGAGCAAC+TGG 0.440195 2_3:+65633330 Msa0306600:CDS
CTTGCTGGCATAGTAATTTG+AGG 0.441796 2_3:+65634944 Msa0306600:CDS
ACAAAGGATTAGATCATTTG+TGG 0.445312 2_3:+65634876 Msa0306600:CDS
ATTAATTGTTTACAAAGTAA+TGG 0.455659 2_3:+65634658 Msa0306600:CDS
TGTACATACCCTGGATAGTA+AGG 0.457320 2_3:-65633414 None:intergenic
TACCAAATCACATGGGTTTG+TGG 0.464212 2_3:+65635179 Msa0306600:three_prime_UTR
AAATCCATTAGGCACAGTTA+TGG 0.479153 2_3:+65634219 Msa0306600:CDS
TCAAAAGACATGGGATTCCC+TGG 0.480186 2_3:+65634424 Msa0306600:CDS
ACTGTGCCTAATGGATTTGA+GGG 0.481893 2_3:-65634214 None:intergenic
CATCATCTTACTTTGATGGA+TGG 0.487153 2_3:+65632822 Msa0306600:CDS
CCTCATGGTGTTATCCAAAT+GGG 0.487603 2_3:+65632884 Msa0306600:CDS
GATTCTGATGTTATCTTCTG+TGG 0.488021 2_3:-65634170 None:intergenic
AGAAGAACACTAAACCTTGC+TGG 0.489355 2_3:+65634929 Msa0306600:CDS
ATTTGCTAGCTAGACTCTTA+CGG 0.490513 2_3:+65632441 Msa0306600:five_prime_UTR
CAGCTATGCTTATGAAACTT+GGG 0.490646 2_3:-65634336 None:intergenic
GCAGATTTGATAGAGATTTG+AGG 0.492142 2_3:+65634053 Msa0306600:intron
CATTTCATTGTTCTGAGCCA+GGG 0.492750 2_3:+65634800 Msa0306600:CDS
ACCAGGATCTGCCAAACAAA+AGG 0.493747 2_3:-65633370 None:intergenic
AAACTATGTGAACGAGGTTA+CGG 0.508352 2_3:-65634393 None:intergenic
GGTTAAGCCTTAAAACAAGA+AGG 0.509933 2_3:+65634965 Msa0306600:CDS
TCTTAGACAACAATTGAGGT+TGG 0.527263 2_3:-65632772 None:intergenic
ACAAATCCCTCAAATCCATT+AGG 0.528896 2_3:+65634208 Msa0306600:CDS
GCTATCTTAGACAACAATTG+AGG 0.540964 2_3:-65632776 None:intergenic
GAAGATAACATCAGAATCAA+AGG 0.542170 2_3:+65634175 Msa0306600:CDS
CCACTCATCACAATACGATC+AGG 0.544520 2_3:-65633318 None:intergenic
TCTAAGATAGCCACTGGTGA+TGG 0.550202 2_3:+65632788 Msa0306600:CDS
CCACTCACATTTCTGAACTC+TGG 0.552742 2_3:-65633161 None:intergenic
TGCCTACTCCTTACTATCCA+GGG 0.556150 2_3:+65633406 Msa0306600:CDS
TCCTTCTAGAGTACAAATTG+AGG 0.558961 2_3:-65633090 None:intergenic
CAAGTAGTGGCTTTAACAAG+AGG 0.562133 2_3:-65635033 None:intergenic
ATGTGCAAATTGCTTTACAA+AGG 0.563606 2_3:+65634860 Msa0306600:CDS
GATTTGATAGAGATTTGAGG+TGG 0.566695 2_3:+65634056 Msa0306600:intron
ATCTGCCAAACAAAAGGCAG+TGG 0.571931 2_3:-65633364 None:intergenic
AGTTAGAGATTGCAATGTCT+AGG 0.574321 2_3:-65632588 None:intergenic
CTCAAATTACTATGCCAGCA+AGG 0.576441 2_3:-65634943 None:intergenic
TTGTTGTCTAAGATAGCCAC+TGG 0.576629 2_3:+65632782 Msa0306600:CDS
TGGAGCAACTGGAGCACATG+AGG 0.576944 2_3:+65633341 Msa0306600:CDS
GTTAAGATTAATGTTTCACC+TGG 0.580822 2_3:+65634772 Msa0306600:CDS
AATTGTTTACAAAGTAATGG+TGG 0.584470 2_3:+65634661 Msa0306600:CDS
TTATACCAACTCTAAAACCA+GGG 0.584528 2_3:-65634441 None:intergenic
GTTGTGTTCCTTTAATGTTG+GGG 0.585562 2_3:+65635136 Msa0306600:three_prime_UTR
TACAGTCTTTCAAAAGACAT+GGG 0.586545 2_3:+65634415 Msa0306600:CDS
GACTGAGGAAATGGAGAATG+AGG 0.586929 2_3:-65635009 None:intergenic
GAGGAAGAAGCGAATTTGTG+TGG 0.587762 2_3:-65632644 None:intergenic
AAATTCATGTCTAGAACAAG+AGG 0.590021 2_3:+65633276 Msa0306600:CDS
ATGCTAAATAATTCAAGTAG+TGG 0.595412 2_3:-65635046 None:intergenic
TTACAGTCTTTCAAAAGACA+TGG 0.595760 2_3:+65634414 Msa0306600:CDS
TTGTGTTCCTTTAATGTTGG+GGG 0.595994 2_3:+65635137 Msa0306600:three_prime_UTR
TTCATTGATGAAATTTACAA+CGG 0.599733 2_3:-65634260 None:intergenic
GAAGGTTCACATGAAGGTGA+TGG 0.606036 2_3:-65632469 None:intergenic
TAGAGTGTGTTATGCTAACA+TGG 0.616578 2_3:+65634828 Msa0306600:CDS
ATTATACCAACTCTAAAACC+AGG 0.620538 2_3:-65634442 None:intergenic
AATGTCTAGGAATGAAGTAT+GGG 0.621148 2_3:-65632575 None:intergenic
TTCTTGCTGAAAGTGCAAAG+AGG 0.621704 2_3:+65634587 Msa0306600:CDS
TTCATTGTTCTGAGCCAGGG+TGG 0.625682 2_3:+65634803 Msa0306600:CDS
ACAAACCCATGTGATTTGGT+AGG 0.627809 2_3:-65635177 None:intergenic
AGGAAGAAGCGAATTTGTGT+GGG 0.628251 2_3:-65632643 None:intergenic
CGATGAAATATACGCTGCAA+CGG 0.630366 2_3:+65634303 Msa0306600:CDS
TGTGGTTCAGAATAATAAGG+AGG 0.634977 2_3:+65634894 Msa0306600:CDS
GATCGTATTGTGATGAGTGG+TGG 0.635293 2_3:+65633321 Msa0306600:CDS
TACCCTGGATAGTAAGGAGT+AGG 0.653482 2_3:-65633408 None:intergenic
CCTGATCGTATTGTGATGAG+TGG 0.663504 2_3:+65633318 Msa0306600:CDS
GAACAATGAAATGAAACACC+AGG 0.667249 2_3:-65634790 None:intergenic
CTATGCTTATGAAACTTGGG+TGG 0.667408 2_3:-65634333 None:intergenic
TTCACCATGTCCATCACCAG+TGG 0.671313 2_3:-65632798 None:intergenic
GACTGTAAACTATGTGAACG+AGG 0.673179 2_3:-65634399 None:intergenic
TCTAGGAATGAAGTATGGGG+TGG 0.678564 2_3:-65632571 None:intergenic
TTTGTGTGGATGGATTTGAG+AGG 0.680530 2_3:+65634688 Msa0306600:CDS
TTTGCGCGCACAATTTACAA+CGG 0.684836 2_3:-65634482 None:intergenic
ATAGCCACTGGTGATGGACA+TGG 0.685257 2_3:+65632794 Msa0306600:CDS
CCCATTTGGATAACACCATG+AGG 0.688522 2_3:-65632884 None:intergenic
TTTCACCTACCAAATCACAT+GGG 0.690480 2_3:+65635172 Msa0306600:three_prime_UTR
GCTTTAACAAGAGGTGACTG+AGG 0.694413 2_3:-65635024 None:intergenic
TAACACACTCTAAACCACCC+TGG 0.698750 2_3:-65634817 None:intergenic
ATGTCTAGGAATGAAGTATG+GGG 0.756503 2_3:-65632574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATATGAATTTTTAC+AGG + chr2_3:65633245-65633264 Msa0306600:intron 10.0%
!! TAGACTATAGTAATTAATAA+TGG + chr2_3:65632733-65632752 Msa0306600:exon 15.0%
!! AGACTATAGTAATTAATAAT+GGG + chr2_3:65632734-65632753 Msa0306600:exon 15.0%
!! AAAAATAAAGATGAAGAAAA+GGG - chr2_3:65633457-65633476 None:intergenic 15.0%
!! GAATATTAAAGTAATAACTA+AGG - chr2_3:65633750-65633769 None:intergenic 15.0%
!!! AATGTTTTTGTTTTATTTTC+TGG - chr2_3:65633947-65633966 None:intergenic 15.0%
!! ATTAATTGTTTACAAAGTAA+TGG + chr2_3:65634658-65634677 Msa0306600:CDS 15.0%
!!! ATTTGTTGATTTATTAGTTT+GGG + chr2_3:65635104-65635123 Msa0306600:three_prime_UTR 15.0%
!! TAATAGAATTTGTAATTGTA+AGG + chr2_3:65635212-65635231 Msa0306600:three_prime_UTR 15.0%
!! TTAGTAGTCCAAATATAAAA+AGG - chr2_3:65632494-65632513 None:intergenic 20.0%
!! AGTACATAATTTCAAAGAAA+TGG + chr2_3:65633112-65633131 Msa0306600:CDS 20.0%
!! AAAATAAAGATGAAGAAAAG+GGG - chr2_3:65633456-65633475 None:intergenic 20.0%
!! GAAAAATAAAGATGAAGAAA+AGG - chr2_3:65633458-65633477 None:intergenic 20.0%
!! AAAATAAATAATTGCTCTGA+TGG - chr2_3:65633894-65633913 None:intergenic 20.0%
!!! TTATTTTCTGGTTTGTATAT+AGG - chr2_3:65633935-65633954 None:intergenic 20.0%
!! TAGAATATTATATGACTATG+TGG - chr2_3:65633984-65634003 None:intergenic 20.0%
!! TTCATTGATGAAATTTACAA+CGG - chr2_3:65634263-65634282 None:intergenic 20.0%
!! TAAACAATTAATTCCAACTT+TGG - chr2_3:65634650-65634669 None:intergenic 20.0%
!!! GATTTGTTGATTTATTAGTT+TGG + chr2_3:65635103-65635122 Msa0306600:three_prime_UTR 20.0%
!! TAATTGTAAGGTTATTTGTT+TGG + chr2_3:65635224-65635243 Msa0306600:three_prime_UTR 20.0%
!! TGAACCTTCCTTTTTATATT+TGG + chr2_3:65632483-65632502 Msa0306600:five_prime_UTR 25.0%
! TAGTCCAAATATAAAAAGGA+AGG - chr2_3:65632490-65632509 None:intergenic 25.0%
! TAAAAATATACTGCATGGAT+AGG - chr2_3:65632987-65633006 None:intergenic 25.0%
!! TCAAGTTTAAGATATGATGA+TGG - chr2_3:65633534-65633553 None:intergenic 25.0%
!! TTTTTCATATGCATCTTCTA+AGG - chr2_3:65634149-65634168 None:intergenic 25.0%
! AATTGTTTACAAAGTAATGG+TGG + chr2_3:65634661-65634680 Msa0306600:CDS 25.0%
! ATTTGTGGTTCAGAATAATA+AGG + chr2_3:65634891-65634910 Msa0306600:CDS 25.0%
! ATGCTAAATAATTCAAGTAG+TGG - chr2_3:65635049-65635068 None:intergenic 25.0%
! TTCTGTTACTCAAATTTGTA+AGG + chr2_3:65635269-65635288 Msa0306600:three_prime_UTR 25.0%
AATGTCTAGGAATGAAGTAT+GGG - chr2_3:65632578-65632597 None:intergenic 30.0%
! AACAACAACAAAAAAGTACG+AGG - chr2_3:65632666-65632685 None:intergenic 30.0%
GAAACATCATCTTACTTTGA+TGG + chr2_3:65632818-65632837 Msa0306600:CDS 30.0%
!!! GATTTTTGGTTGGATGAAAA+GGG - chr2_3:65632865-65632884 None:intergenic 30.0%
AGAGCTAAAAATATACTGCA+TGG - chr2_3:65632992-65633011 None:intergenic 30.0%
!! CTACTGATTTGGTTCAAAAT+TGG + chr2_3:65633048-65633067 Msa0306600:CDS 30.0%
! CAAAGAAATGGCTAATTTTC+AGG + chr2_3:65633124-65633143 Msa0306600:CDS 30.0%
!! GCTAATTTTCAGGATTATCA+TGG + chr2_3:65633134-65633153 Msa0306600:CDS 30.0%
! ATATGAATTTTTACAGGCTG+TGG + chr2_3:65633251-65633270 Msa0306600:intron 30.0%
! AAATTCATGTCTAGAACAAG+AGG + chr2_3:65633276-65633295 Msa0306600:CDS 30.0%
TAATAACTAAGGCTGATTAG+TGG - chr2_3:65633739-65633758 None:intergenic 30.0%
GAAGATAACATCAGAATCAA+AGG + chr2_3:65634175-65634194 Msa0306600:CDS 30.0%
CGTATATTTCATCGCTTATT+AGG - chr2_3:65634297-65634316 None:intergenic 30.0%
TTACAGTCTTTCAAAAGACA+TGG + chr2_3:65634414-65634433 Msa0306600:CDS 30.0%
TACAGTCTTTCAAAAGACAT+GGG + chr2_3:65634415-65634434 Msa0306600:CDS 30.0%
!! TTATACCAACTCTAAAACCA+GGG - chr2_3:65634444-65634463 None:intergenic 30.0%
!! ATTATACCAACTCTAAAACC+AGG - chr2_3:65634445-65634464 None:intergenic 30.0%
! ATGTACAGAATTTTCACTAG+TGG + chr2_3:65634619-65634638 Msa0306600:CDS 30.0%
AGCTACATTTGAATCAGAAT+TGG + chr2_3:65634723-65634742 Msa0306600:CDS 30.0%
TTGAATCAGAATTGGAACTT+TGG + chr2_3:65634731-65634750 Msa0306600:CDS 30.0%
GTTAAGATTAATGTTTCACC+TGG + chr2_3:65634772-65634791 Msa0306600:CDS 30.0%
ATGTGCAAATTGCTTTACAA+AGG + chr2_3:65634860-65634879 Msa0306600:CDS 30.0%
ACAAAGGATTAGATCATTTG+TGG + chr2_3:65634876-65634895 Msa0306600:CDS 30.0%
TCAGAATAATAAGGAGGTTA+TGG + chr2_3:65634900-65634919 Msa0306600:CDS 30.0%
!!! CATCAAACCTTCTTGTTTTA+AGG - chr2_3:65634975-65634994 None:intergenic 30.0%
ATGTTGTGTTCCTTTAATGT+TGG + chr2_3:65635134-65635153 Msa0306600:three_prime_UTR 30.0%
TGTTGTGTTCCTTTAATGTT+GGG + chr2_3:65635135-65635154 Msa0306600:three_prime_UTR 30.0%
! AACAGAACACAGATATTTTC+TGG - chr2_3:65635256-65635275 None:intergenic 30.0%
! ATTTGCTAGCTAGACTCTTA+CGG + chr2_3:65632441-65632460 Msa0306600:five_prime_UTR 35.0%
AAAAAGGAAGGTTCACATGA+AGG - chr2_3:65632478-65632497 None:intergenic 35.0%
ATGTCTAGGAATGAAGTATG+GGG - chr2_3:65632577-65632596 None:intergenic 35.0%
CAATGTCTAGGAATGAAGTA+TGG - chr2_3:65632579-65632598 None:intergenic 35.0%
AGTTAGAGATTGCAATGTCT+AGG - chr2_3:65632591-65632610 None:intergenic 35.0%
TCTTAGACAACAATTGAGGT+TGG - chr2_3:65632775-65632794 None:intergenic 35.0%
GCTATCTTAGACAACAATTG+AGG - chr2_3:65632779-65632798 None:intergenic 35.0%
CATCATCTTACTTTGATGGA+TGG + chr2_3:65632822-65632841 Msa0306600:CDS 35.0%
!!! GGATTTTTGGTTGGATGAAA+AGG - chr2_3:65632866-65632885 None:intergenic 35.0%
! GATAACACCATGAGGATTTT+TGG - chr2_3:65632879-65632898 None:intergenic 35.0%
CAGGTATATATCAAGCTTTG+AGG + chr2_3:65632920-65632939 Msa0306600:intron 35.0%
! TTTCCAGCTTACTACTGATT+TGG + chr2_3:65633037-65633056 Msa0306600:intron 35.0%
!! TCCTTCTAGAGTACAAATTG+AGG - chr2_3:65633093-65633112 None:intergenic 35.0%
TGAATTGAATGTACATACCC+TGG - chr2_3:65633426-65633445 None:intergenic 35.0%
TTTATAGTGCAATCAGCTAC+AGG + chr2_3:65633566-65633585 Msa0306600:intron 35.0%
TCACTGCACTGTAAAGTAAA+CGG + chr2_3:65633645-65633664 Msa0306600:intron 35.0%
!! CAGTAAAACATTTTCAAGCG+CGG + chr2_3:65633668-65633687 Msa0306600:intron 35.0%
!!! TGGAACTGACTTTTTCAACA+AGG + chr2_3:65633805-65633824 Msa0306600:intron 35.0%
!!! GGAACTGACTTTTTCAACAA+GGG + chr2_3:65633806-65633825 Msa0306600:intron 35.0%
GCAGATTTGATAGAGATTTG+AGG + chr2_3:65634053-65634072 Msa0306600:intron 35.0%
GATTTGATAGAGATTTGAGG+TGG + chr2_3:65634056-65634075 Msa0306600:intron 35.0%
GATTCTGATGTTATCTTCTG+TGG - chr2_3:65634173-65634192 None:intergenic 35.0%
ACAAATCCCTCAAATCCATT+AGG + chr2_3:65634208-65634227 Msa0306600:CDS 35.0%
AAATCCATTAGGCACAGTTA+TGG + chr2_3:65634219-65634238 Msa0306600:CDS 35.0%
CAGCTATGCTTATGAAACTT+GGG - chr2_3:65634339-65634358 None:intergenic 35.0%
TCAGCTATGCTTATGAAACT+TGG - chr2_3:65634340-65634359 None:intergenic 35.0%
AAACTATGTGAACGAGGTTA+CGG - chr2_3:65634396-65634415 None:intergenic 35.0%
AACACAGACACAATACTTGA+TGG + chr2_3:65634528-65634547 Msa0306600:CDS 35.0%
!! ACTAGTGGATTAACCAAAGT+TGG + chr2_3:65634634-65634653 Msa0306600:CDS 35.0%
GAACAATGAAATGAAACACC+AGG - chr2_3:65634793-65634812 None:intergenic 35.0%
TAGAGTGTGTTATGCTAACA+TGG + chr2_3:65634828-65634847 Msa0306600:CDS 35.0%
TGTGGTTCAGAATAATAAGG+AGG + chr2_3:65634894-65634913 Msa0306600:CDS 35.0%
GGTTAAGCCTTAAAACAAGA+AGG + chr2_3:65634965-65634984 Msa0306600:CDS 35.0%
GTTGTGTTCCTTTAATGTTG+GGG + chr2_3:65635136-65635155 Msa0306600:three_prime_UTR 35.0%
TTGTGTTCCTTTAATGTTGG+GGG + chr2_3:65635137-65635156 Msa0306600:three_prime_UTR 35.0%
AAAAATGCCCCCAACATTAA+AGG - chr2_3:65635147-65635166 None:intergenic 35.0%
! TTTTCACCTACCAAATCACA+TGG + chr2_3:65635171-65635190 Msa0306600:three_prime_UTR 35.0%
TTTCACCTACCAAATCACAT+GGG + chr2_3:65635172-65635191 Msa0306600:three_prime_UTR 35.0%
AGGAAGAAGCGAATTTGTGT+GGG - chr2_3:65632646-65632665 None:intergenic 40.0%
! TTGTTGTCTAAGATAGCCAC+TGG + chr2_3:65632782-65632801 Msa0306600:CDS 40.0%
CATCCAACCAAAAATCCTCA+TGG + chr2_3:65632869-65632888 Msa0306600:CDS 40.0%
!!! ACACCATGAGGATTTTTGGT+TGG - chr2_3:65632875-65632894 None:intergenic 40.0%
!! TCCTCATGGTGTTATCCAAA+TGG + chr2_3:65632883-65632902 Msa0306600:CDS 40.0%
!! CCTCATGGTGTTATCCAAAT+GGG + chr2_3:65632884-65632903 Msa0306600:CDS 40.0%
GAACCAAATCAGTAGTAAGC+TGG - chr2_3:65633043-65633062 None:intergenic 40.0%
GAGTACAAATTGAGGCTTCT+GGG - chr2_3:65633085-65633104 None:intergenic 40.0%
AGAGTACAAATTGAGGCTTC+TGG - chr2_3:65633086-65633105 None:intergenic 40.0%
GCCTCAATTTGTACTCTAGA+AGG + chr2_3:65633089-65633108 Msa0306600:CDS 40.0%
!!! AGATCCTGGTGATGCTTTTT+TGG + chr2_3:65633383-65633402 Msa0306600:CDS 40.0%
TGTACATACCCTGGATAGTA+AGG - chr2_3:65633417-65633436 None:intergenic 40.0%
TCCATCAAAATTCACTACCC+TGG - chr2_3:65633789-65633808 None:intergenic 40.0%
TTTGCACTTTCGCAGATAAC+TGG - chr2_3:65634103-65634122 None:intergenic 40.0%
!! ACTGTGCCTAATGGATTTGA+GGG - chr2_3:65634217-65634236 None:intergenic 40.0%
!! AACTGTGCCTAATGGATTTG+AGG - chr2_3:65634218-65634237 None:intergenic 40.0%
CAACGGTTCTTAATGTGCTT+CGG - chr2_3:65634246-65634265 None:intergenic 40.0%
CGATGAAATATACGCTGCAA+CGG + chr2_3:65634303-65634322 Msa0306600:CDS 40.0%
CTATGCTTATGAAACTTGGG+TGG - chr2_3:65634336-65634355 None:intergenic 40.0%
GACTGTAAACTATGTGAACG+AGG - chr2_3:65634402-65634421 None:intergenic 40.0%
TTTGCGCGCACAATTTACAA+CGG - chr2_3:65634485-65634504 None:intergenic 40.0%
! TTCTTGCTGAAAGTGCAAAG+AGG + chr2_3:65634587-65634606 Msa0306600:CDS 40.0%
!!! GTAATGGTGGACTTTTTGTG+TGG + chr2_3:65634674-65634693 Msa0306600:CDS 40.0%
! TTTGTGTGGATGGATTTGAG+AGG + chr2_3:65634688-65634707 Msa0306600:CDS 40.0%
GGATTTGAGAGGACTTCTTA+AGG + chr2_3:65634699-65634718 Msa0306600:CDS 40.0%
! TCATTTCATTGTTCTGAGCC+AGG + chr2_3:65634799-65634818 Msa0306600:CDS 40.0%
! CATTTCATTGTTCTGAGCCA+GGG + chr2_3:65634800-65634819 Msa0306600:CDS 40.0%
AGAAGAACACTAAACCTTGC+TGG + chr2_3:65634929-65634948 Msa0306600:CDS 40.0%
CTCAAATTACTATGCCAGCA+AGG - chr2_3:65634946-65634965 None:intergenic 40.0%
CTTGCTGGCATAGTAATTTG+AGG + chr2_3:65634944-65634963 Msa0306600:CDS 40.0%
!! CAAGTAGTGGCTTTAACAAG+AGG - chr2_3:65635036-65635055 None:intergenic 40.0%
!! ACAAACCCATGTGATTTGGT+AGG - chr2_3:65635180-65635199 None:intergenic 40.0%
TACCAAATCACATGGGTTTG+TGG + chr2_3:65635179-65635198 Msa0306600:three_prime_UTR 40.0%
GAAGGTTCACATGAAGGTGA+TGG - chr2_3:65632472-65632491 None:intergenic 45.0%
TCTAGGAATGAAGTATGGGG+TGG - chr2_3:65632574-65632593 None:intergenic 45.0%
GAGGAAGAAGCGAATTTGTG+TGG - chr2_3:65632647-65632666 None:intergenic 45.0%
! TCTAAGATAGCCACTGGTGA+TGG + chr2_3:65632788-65632807 Msa0306600:CDS 45.0%
CCCATTTGGATAACACCATG+AGG - chr2_3:65632887-65632906 None:intergenic 45.0%
GATTCTCTGCAAGACCCATT+TGG - chr2_3:65632901-65632920 None:intergenic 45.0%
AATGGGTCTTGCAGAGAATC+AGG + chr2_3:65632901-65632920 Msa0306600:CDS 45.0%
CCACTCACATTTCTGAACTC+TGG - chr2_3:65633164-65633183 None:intergenic 45.0%
CCAGAGTTCAGAAATGTGAG+TGG + chr2_3:65633161-65633180 Msa0306600:intron 45.0%
CCACTCATCACAATACGATC+AGG - chr2_3:65633321-65633340 None:intergenic 45.0%
CCTGATCGTATTGTGATGAG+TGG + chr2_3:65633318-65633337 Msa0306600:CDS 45.0%
GATCGTATTGTGATGAGTGG+TGG + chr2_3:65633321-65633340 Msa0306600:CDS 45.0%
ATCTGCCAAACAAAAGGCAG+TGG - chr2_3:65633367-65633386 None:intergenic 45.0%
ACCAGGATCTGCCAAACAAA+AGG - chr2_3:65633373-65633392 None:intergenic 45.0%
TGCCTACTCCTTACTATCCA+GGG + chr2_3:65633406-65633425 Msa0306600:CDS 45.0%
TACCCTGGATAGTAAGGAGT+AGG - chr2_3:65633411-65633430 None:intergenic 45.0%
TCCAGTCATCATTAGAAGCC+AGG + chr2_3:65633768-65633787 Msa0306600:intron 45.0%
CCAGTCATCATTAGAAGCCA+GGG + chr2_3:65633769-65633788 Msa0306600:intron 45.0%
! GCCAGGGTAGTGAATTTTGA+TGG + chr2_3:65633785-65633804 Msa0306600:intron 45.0%
! AGAGATTTGAGGTGGAGAAC+AGG + chr2_3:65634064-65634083 Msa0306600:CDS 45.0%
TCAAAAGACATGGGATTCCC+TGG + chr2_3:65634424-65634443 Msa0306600:CDS 45.0%
!!! GGATTCCCTGGTTTTAGAGT+TGG + chr2_3:65634436-65634455 Msa0306600:CDS 45.0%
!!! TGGTGGACTTTTTGTGTGGA+TGG + chr2_3:65634678-65634697 Msa0306600:CDS 45.0%
TAACACACTCTAAACCACCC+TGG - chr2_3:65634820-65634839 None:intergenic 45.0%
GACTGAGGAAATGGAGAATG+AGG - chr2_3:65635012-65635031 None:intergenic 45.0%
ACAAGAGGTGACTGAGGAAA+TGG - chr2_3:65635021-65635040 None:intergenic 45.0%
GCTTTAACAAGAGGTGACTG+AGG - chr2_3:65635027-65635046 None:intergenic 45.0%
CACCACAAACCCATGTGATT+TGG - chr2_3:65635184-65635203 None:intergenic 45.0%
!!! TAATTGATAATATTTATAAT+TGG - chr2_3:65633480-65633499 None:intergenic 5.0%
!! ATAGCCACTGGTGATGGACA+TGG + chr2_3:65632794-65632813 Msa0306600:CDS 50.0%
TTCACCATGTCCATCACCAG+TGG - chr2_3:65632801-65632820 None:intergenic 50.0%
! TGAGGCCACTGCCTTTTGTT+TGG + chr2_3:65633359-65633378 Msa0306600:CDS 50.0%
!! GCCTTTTGTTTGGCAGATCC+TGG + chr2_3:65633369-65633388 Msa0306600:CDS 50.0%
!! GGCACCAAAAAAGCATCACC+AGG - chr2_3:65633390-65633409 None:intergenic 50.0%
GTGCCTACTCCTTACTATCC+AGG + chr2_3:65633405-65633424 Msa0306600:CDS 50.0%
CAGTGCAGTGAGTTGCAAGT+CGG - chr2_3:65633636-65633655 None:intergenic 50.0%
CCCTGGCTTCTAATGATGAC+TGG - chr2_3:65633772-65633791 None:intergenic 50.0%
CGGTCCATAACTGTGCCTAA+TGG - chr2_3:65634226-65634245 None:intergenic 50.0%
! GCGCGCAAAATGTCGAGTTT+TGG + chr2_3:65634496-65634515 Msa0306600:CDS 50.0%
! TTCATTGTTCTGAGCCAGGG+TGG + chr2_3:65634803-65634822 Msa0306600:CDS 50.0%
! GTGATGAGTGGTGGAGCAAC+TGG + chr2_3:65633330-65633349 Msa0306600:CDS 55.0%
TGGAGCAACTGGAGCACATG+AGG + chr2_3:65633341-65633360 Msa0306600:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 65632430 65635359 65632430 ID=Msa0306600;Name=Msa0306600
chr2_3 mRNA 65632430 65635359 65632430 ID=Msa0306600-mRNA-1;Parent=Msa0306600;Name=Msa0306600-mRNA-1;_AED=0.14;_eAED=0.14;_QI=322|1|1|1|1|1|4|303|487
chr2_3 exon 65632430 65632922 65632430 ID=Msa0306600-mRNA-1:exon:21826;Parent=Msa0306600-mRNA-1
chr2_3 exon 65633044 65633175 65633044 ID=Msa0306600-mRNA-1:exon:21827;Parent=Msa0306600-mRNA-1
chr2_3 exon 65633267 65633427 65633267 ID=Msa0306600-mRNA-1:exon:21828;Parent=Msa0306600-mRNA-1
chr2_3 exon 65634057 65635359 65634057 ID=Msa0306600-mRNA-1:exon:21829;Parent=Msa0306600-mRNA-1
chr2_3 five_prime_UTR 65632430 65632751 65632430 ID=Msa0306600-mRNA-1:five_prime_utr;Parent=Msa0306600-mRNA-1
chr2_3 CDS 65632752 65632922 65632752 ID=Msa0306600-mRNA-1:cds;Parent=Msa0306600-mRNA-1
chr2_3 CDS 65633044 65633175 65633044 ID=Msa0306600-mRNA-1:cds;Parent=Msa0306600-mRNA-1
chr2_3 CDS 65633267 65633427 65633267 ID=Msa0306600-mRNA-1:cds;Parent=Msa0306600-mRNA-1
chr2_3 CDS 65634057 65635056 65634057 ID=Msa0306600-mRNA-1:cds;Parent=Msa0306600-mRNA-1
chr2_3 three_prime_UTR 65635057 65635359 65635057 ID=Msa0306600-mRNA-1:three_prime_utr;Parent=Msa0306600-mRNA-1
Gene Sequence

>Msa0306600

ATGGGACTTGTGAGCATGAACCAACCTCAATTGTTGTCTAAGATAGCCACTGGTGATGGACATGGTGAAACATCATCTTACTTTGATGGATGGAAAGCTTATGATAAAGACCCTTTTCATCCAACCAAAAATCCTCATGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTACTGATTTGGTTCAAAATTGGATAATGAGTAACCCAGAAGCCTCAATTTGTACTCTAGAAGGAGTACATAATTTCAAAGAAATGGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAATAGAGTGACATTTAATCCTGATCGTATTGTGATGAGTGGTGGAGCAACTGGAGCACATGAGGCCACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTGCCTACTCCTTACTATCCAGGATTTGATAGAGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTATCTGCGAAAGTGCAAACAATTTCAAATTAACAAAACAAGCCTTAGAAGATGCATATGAAAAAGCCACAGAAGATAACATCAGAATCAAAGGTTTACTCATAACAAATCCCTCAAATCCATTAGGCACAGTTATGGACCGAAGCACATTAAGAACCGTTGTAAATTTCATCAATGAAAAGCGTATTCACCTAATAAGCGATGAAATATACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATAGCTGAAATATTAGAACATGACACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCAAAAGACATGGGATTCCCTGGTTTTAGAGTTGGTATAATATACTCTTACAATGATACCGTTGTAAATTGTGCGCGCAAAATGTCGAGTTTTGGATTAGTTTCAACACAGACACAATACTTGATGGCAAAAATGCTATCTGATGATGAATTTGTTGAAAAGTTTCTTGCTGAAAGTGCAAAGAGGTTAGCACAAATGTACAGAATTTTCACTAGTGGATTAACCAAAGTTGGAATTAATTGTTTACAAAGTAATGGTGGACTTTTTGTGTGGATGGATTTGAGAGGACTTCTTAAGGAAGCTACATTTGAATCAGAATTGGAACTTTGGAGAGTGATTATTCATGAAGTTAAGATTAATGTTTCACCTGGTGTTTCATTTCATTGTTCTGAGCCAGGGTGGTTTAGAGTGTGTTATGCTAACATGGATGATAGAGATGTGCAAATTGCTTTACAAAGGATTAGATCATTTGTGGTTCAGAATAATAAGGAGGTTATGGTGTCTGAGAAGAACACTAAACCTTGCTGGCATAGTAATTTGAGGTTAAGCCTTAAAACAAGAAGGTTTGATGATATTGTAATGTCACCTCATTCTCCATTTCCTCAGTCACCTCTTGTTAAAGCCACTACTTGA

Protein sequence

>Msa0306600

MGLVSMNQPQLLSKIATGDGHGETSSYFDGWKAYDKDPFHPTKNPHGVIQMGLAENQLTTDLVQNWIMSNPEASICTLEGVHNFKEMANFQDYHGLPEFRNAVAKFMSRTRGNRVTFNPDRIVMSGGATGAHEATAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVKLVPVICESANNFKLTKQALEDAYEKATEDNIRIKGLLITNPSNPLGTVMDRSTLRTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEILEHDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDTVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVEKFLAESAKRLAQMYRIFTSGLTKVGINCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHEVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALQRIRSFVVQNNKEVMVSEKNTKPCWHSNLRLSLKTRRFDDIVMSPHSPFPQSPLVKATT*