AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363400 MtrunA17_Chr8g0387481 97.947 487 10 0 1 487 1 487 0.0 1005
Msa1363400 MtrunA17_Chr7g0248681 65.784 491 156 4 1 486 1 484 0.0 677
Msa1363400 MtrunA17_Chr8g0348351 64.583 480 159 3 10 486 9 480 0.0 669
Msa1363400 MtrunA17_Chr4g0054371 55.011 449 194 3 10 450 2 450 0.0 544
Msa1363400 MtrunA17_Chr3g0135251 53.571 448 199 4 11 451 1 446 0.0 528
Msa1363400 MtrunA17_Chr5g0400831 54.503 433 191 4 10 436 2 434 0.0 527
Msa1363400 MtrunA17_Chr8g0389311 56.000 425 178 2 12 436 12 427 0.0 516
Msa1363400 MtrunA17_Chr8g0389321 56.000 425 178 2 12 436 12 427 0.0 516
Msa1363400 MtrunA17_Chr6g0488041 55.079 443 192 5 1 441 1 438 0.0 516
Msa1363400 MtrunA17_Chr6g0475681 42.353 425 241 2 12 435 104 525 5.73e-136 402
Msa1363400 MtrunA17_Chr5g0398431 40.541 407 239 1 25 431 85 488 5.42e-120 360
Msa1363400 MtrunA17_Chr8g0345201 23.077 351 243 12 94 422 158 503 4.39e-17 84.0
Msa1363400 MtrunA17_Chr5g0412871 24.257 404 265 17 39 408 42 438 4.17e-16 80.9
Msa1363400 MtrunA17_Chr7g0267911 22.346 358 235 15 95 436 135 465 1.07e-15 79.3
Msa1363400 MtrunA17_Chr4g0004131 22.599 354 234 14 87 432 61 382 6.77e-15 76.3
Msa1363400 MtrunA17_Chr2g0324801 23.529 374 228 16 89 438 42 381 1.01e-13 72.8
Msa1363400 MtrunA17_Chr3g0114811 23.559 399 241 16 46 422 86 442 1.97e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363400 AT4G11280.1 66.191 491 143 4 11 487 14 495 0.0 661
Msa1363400 AT3G61510.1 62.062 485 170 3 10 485 9 488 0.0 645
Msa1363400 AT1G01480.1 60.241 498 183 6 1 485 1 496 0.0 643
Msa1363400 AT4G37770.1 58.275 429 172 3 11 435 3 428 0.0 550
Msa1363400 AT2G22810.1 55.349 430 190 2 12 439 4 433 0.0 518
Msa1363400 AT5G65800.1 54.128 436 197 2 12 445 4 438 2.39e-180 514
Msa1363400 AT3G49700.1 54.005 437 198 2 12 446 4 439 3.07e-180 513
Msa1363400 AT4G08040.1 53.613 429 197 2 11 439 1 427 8.49e-180 512
Msa1363400 AT4G26200.1 56.000 425 185 2 12 435 18 441 5.27e-179 509
Msa1363400 AT1G01480.2 58.163 392 149 6 107 485 1 390 5.90e-168 479
Msa1363400 AT5G51690.1 42.822 411 231 2 25 434 82 489 1.23e-125 375
Msa1363400 AT1G62960.1 42.615 413 227 6 22 432 143 547 1.07e-124 375
Msa1363400 AT5G51690.2 44.068 354 195 1 79 432 14 364 3.99e-114 341
Msa1363400 AT2G22250.1 24.533 375 229 16 80 432 74 416 7.83e-20 92.0
Msa1363400 AT2G22250.3 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa1363400 AT2G22250.2 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa1363400 AT1G23310.2 25.000 348 226 15 87 408 100 438 3.94e-18 87.0
Msa1363400 AT1G23310.1 25.000 348 226 15 87 408 100 438 4.25e-18 87.4
Msa1363400 AT1G70580.4 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1363400 AT1G70580.2 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1363400 AT1G70580.3 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1363400 AT1G70580.1 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1363400 AT1G17290.1 25.952 289 196 10 94 368 177 461 1.42e-17 85.9
Msa1363400 AT1G72330.1 23.562 365 247 13 94 434 174 530 1.32e-16 82.8
Msa1363400 AT5G36160.1 22.826 368 239 14 89 440 79 417 3.30e-15 78.2
Msa1363400 AT1G72330.3 22.513 382 251 13 90 434 170 543 6.65e-15 77.8
Msa1363400 AT1G72330.2 26.860 242 162 8 90 323 170 404 1.64e-14 75.9
Msa1363400 AT1G77670.1 22.980 396 255 15 59 432 66 433 1.17e-11 67.0

Find 116 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGATTTGGTTCAAAAT+TGG 0.180902 tig0018036:-238822 Msa1363400:CDS
CGTATATTTCATCGCTTATT+AGG 0.237518 tig0018036:+237572 None:intergenic
TAGACTATAGTAATTAATAA+TGG 0.275952 tig0018036:-239137 Msa1363400:exon
AGAGTACAAATTGAGGCTTC+TGG 0.284872 tig0018036:+238787 None:intergenic
GATTTGTTGATTTATTAGTT+TGG 0.286489 tig0018036:-236763 Msa1363400:three_prime_UTR
TTTGCACTTTCGCAGATAAC+TGG 0.298899 tig0018036:+237766 None:intergenic
AGAGATTTGAGGTGGAGAAC+AGG 0.302380 tig0018036:-237802 Msa1363400:CDS
CAATGTCTAGGAATGAAGTA+TGG 0.312104 tig0018036:+239294 None:intergenic
ATTTGTTGATTTATTAGTTT+GGG 0.312718 tig0018036:-236762 Msa1363400:three_prime_UTR
TTAGTAGTCCAAATATAAAA+AGG 0.318247 tig0018036:+239379 None:intergenic
TTTCCAGCTTACTACTGATT+TGG 0.334888 tig0018036:-238833 Msa1363400:intron
GCGCGCAAAATGTCGAGTTT+TGG 0.341792 tig0018036:-237370 Msa1363400:CDS
CACCACAAACCCATGTGATT+TGG 0.343608 tig0018036:+236685 None:intergenic
AGCTACATTTGAATCAGAAT+TGG 0.358107 tig0018036:-237143 Msa1363400:CDS
AGACTATAGTAATTAATAAT+GGG 0.359076 tig0018036:-239136 Msa1363400:exon
ATTTGTGGTTCAGAATAATA+AGG 0.368943 tig0018036:-236975 Msa1363400:CDS
TAATAGAATTTGTAATTGTA+AGG 0.374758 tig0018036:-236654 Msa1363400:three_prime_UTR
TCCTCATGGTGTTATCCAAA+TGG 0.374967 tig0018036:-238987 Msa1363400:CDS
AGTACATAATTTCAAAGAAA+TGG 0.381772 tig0018036:-238758 Msa1363400:CDS
TCAGAATAATAAGGAGGTTA+TGG 0.384538 tig0018036:-236966 Msa1363400:CDS
TTCTGTTACTCAAATTTGTA+AGG 0.384841 tig0018036:-236597 Msa1363400:three_prime_UTR
AACACAGACACAATACTTGA+TGG 0.385707 tig0018036:-237338 Msa1363400:CDS
GCCTCAATTTGTACTCTAGA+AGG 0.386175 tig0018036:-238781 Msa1363400:CDS
ACAAGAGGTGACTGAGGAAA+TGG 0.387130 tig0018036:+236848 None:intergenic
TGTTGTGTTCCTTTAATGTT+GGG 0.388781 tig0018036:-236731 Msa1363400:three_prime_UTR
TCAGCTATGCTTATGAAACT+TGG 0.389874 tig0018036:+237529 None:intergenic
TAAACAATTAATTCCAACTT+TGG 0.390119 tig0018036:+237219 None:intergenic
TCATTTCATTGTTCTGAGCC+AGG 0.391963 tig0018036:-237067 Msa1363400:CDS
ACTAGTGGATTAACCAAAGT+TGG 0.392203 tig0018036:-237232 Msa1363400:CDS
GAGTACAAATTGAGGCTTCT+GGG 0.396801 tig0018036:+238788 None:intergenic
GAAACATCATCTTACTTTGA+TGG 0.397210 tig0018036:-239052 Msa1363400:CDS
AATGGGTCTTGCAGAGAATC+AGG 0.399230 tig0018036:-238969 Msa1363400:intron
GATTCTCTGCAAGACCCATT+TGG 0.400674 tig0018036:+238972 None:intergenic
GTGCCTACTCCTTACTATCC+AGG 0.402112 tig0018036:-238465 Msa1363400:CDS
GGATTTGAGAGGACTTCTTA+AGG 0.406992 tig0018036:-237167 Msa1363400:CDS
TAATTGTAAGGTTATTTGTT+TGG 0.410239 tig0018036:-236642 Msa1363400:three_prime_UTR
TTGAATCAGAATTGGAACTT+TGG 0.414840 tig0018036:-237135 Msa1363400:CDS
CGGTCCATAACTGTGCCTAA+TGG 0.421374 tig0018036:+237643 None:intergenic
CAACGGTTCTTAATGTGCTT+CGG 0.426255 tig0018036:+237623 None:intergenic
ATGTTGTGTTCCTTTAATGT+TGG 0.439273 tig0018036:-236732 Msa1363400:three_prime_UTR
AACTGTGCCTAATGGATTTG+AGG 0.440159 tig0018036:+237651 None:intergenic
GTGATGAGTGGTGGAGCAAC+TGG 0.440195 tig0018036:-238540 Msa1363400:CDS
CTTGCTGGCATAGTAATTTG+AGG 0.441796 tig0018036:-236922 Msa1363400:CDS
ACAAAGGATTAGATCATTTG+TGG 0.445312 tig0018036:-236990 Msa1363400:CDS
ATTAATTGTTTACAAAGTAA+TGG 0.455659 tig0018036:-237208 Msa1363400:CDS
TGTACATACCCTGGATAGTA+AGG 0.457320 tig0018036:+238456 None:intergenic
TACCAAATCACATGGGTTTG+TGG 0.464212 tig0018036:-236687 Msa1363400:three_prime_UTR
AAATCCATTAGGCACAGTTA+TGG 0.479153 tig0018036:-237647 Msa1363400:CDS
TCAAAAGACATGGGATTCCC+TGG 0.480186 tig0018036:-237442 Msa1363400:CDS
ACTGTGCCTAATGGATTTGA+GGG 0.481893 tig0018036:+237652 None:intergenic
CATCATCTTACTTTGATGGA+TGG 0.487153 tig0018036:-239048 Msa1363400:CDS
CCTCATGGTGTTATCCAAAT+GGG 0.487603 tig0018036:-238986 Msa1363400:CDS
GATTCTGATGTTATCTTCTG+TGG 0.488021 tig0018036:+237696 None:intergenic
AGAAGAACACTAAACCTTGC+TGG 0.489355 tig0018036:-236937 Msa1363400:CDS
ATTTGCTAGCTAGACTCTTA+CGG 0.490513 tig0018036:-239429 Msa1363400:five_prime_UTR
CAGCTATGCTTATGAAACTT+GGG 0.490646 tig0018036:+237530 None:intergenic
GCAGATTTGATAGAGATTTG+AGG 0.492142 tig0018036:-237813 Msa1363400:intron
CATTTCATTGTTCTGAGCCA+GGG 0.492750 tig0018036:-237066 Msa1363400:CDS
ACCAGGATCTGCCAAACAAA+AGG 0.493747 tig0018036:+238500 None:intergenic
AAACTATGTGAACGAGGTTA+CGG 0.508352 tig0018036:+237473 None:intergenic
GGTTAAGCCTTAAAACAAGA+AGG 0.509933 tig0018036:-236901 Msa1363400:CDS
TCTTAGACAACAATTGAGGT+TGG 0.527263 tig0018036:+239098 None:intergenic
ACAAATCCCTCAAATCCATT+AGG 0.528896 tig0018036:-237658 Msa1363400:CDS
GCTATCTTAGACAACAATTG+AGG 0.540964 tig0018036:+239094 None:intergenic
GAAGATAACATCAGAATCAA+AGG 0.542170 tig0018036:-237691 Msa1363400:CDS
CCACTCATCACAATACGATC+AGG 0.544520 tig0018036:+238552 None:intergenic
TCTAAGATAGCCACTGGTGA+TGG 0.550202 tig0018036:-239082 Msa1363400:CDS
CCACTCACATTTCTGAACTC+TGG 0.552742 tig0018036:+238709 None:intergenic
TGCCTACTCCTTACTATCCA+GGG 0.556150 tig0018036:-238464 Msa1363400:intron
TCCTTCTAGAGTACAAATTG+AGG 0.558961 tig0018036:+238780 None:intergenic
CAAGTAGTGGCTTTAACAAG+AGG 0.562133 tig0018036:+236833 None:intergenic
ATGTGCAAATTGCTTTACAA+AGG 0.563606 tig0018036:-237006 Msa1363400:CDS
GATTTGATAGAGATTTGAGG+TGG 0.566695 tig0018036:-237810 Msa1363400:CDS
ATCTGCCAAACAAAAGGCAG+TGG 0.571931 tig0018036:+238506 None:intergenic
AGTTAGAGATTGCAATGTCT+AGG 0.574321 tig0018036:+239282 None:intergenic
CTCAAATTACTATGCCAGCA+AGG 0.576441 tig0018036:+236923 None:intergenic
TTGTTGTCTAAGATAGCCAC+TGG 0.576629 tig0018036:-239088 Msa1363400:CDS
TGGAGCAACTGGAGCACATG+AGG 0.576944 tig0018036:-238529 Msa1363400:CDS
GTTAAGATTAATGTTTCACC+TGG 0.580822 tig0018036:-237094 Msa1363400:CDS
AATTGTTTACAAAGTAATGG+TGG 0.584470 tig0018036:-237205 Msa1363400:CDS
TTATACCAACTCTAAAACCA+GGG 0.584528 tig0018036:+237425 None:intergenic
GTTGTGTTCCTTTAATGTTG+GGG 0.585562 tig0018036:-236730 Msa1363400:three_prime_UTR
TACAGTCTTTCAAAAGACAT+GGG 0.586545 tig0018036:-237451 Msa1363400:CDS
GACTGAGGAAATGGAGAATG+AGG 0.586929 tig0018036:+236857 None:intergenic
GAGGAAGAAGCGAATTTGTG+TGG 0.587762 tig0018036:+239226 None:intergenic
AAATTCATGTCTAGAACAAG+AGG 0.590021 tig0018036:-238594 Msa1363400:CDS
ATGCTAAATAATTCAAGTAG+TGG 0.595412 tig0018036:+236820 None:intergenic
TTACAGTCTTTCAAAAGACA+TGG 0.595760 tig0018036:-237452 Msa1363400:CDS
TTGTGTTCCTTTAATGTTGG+GGG 0.595994 tig0018036:-236729 Msa1363400:three_prime_UTR
TTCATTGATGAAATTTACAA+CGG 0.599733 tig0018036:+237606 None:intergenic
GAAGGTTCACATGAAGGTGA+TGG 0.606036 tig0018036:+239401 None:intergenic
TAGAGTGTGTTATGCTAACA+TGG 0.616578 tig0018036:-237038 Msa1363400:CDS
ATTATACCAACTCTAAAACC+AGG 0.620538 tig0018036:+237424 None:intergenic
AATGTCTAGGAATGAAGTAT+GGG 0.621148 tig0018036:+239295 None:intergenic
TTCTTGCTGAAAGTGCAAAG+AGG 0.621704 tig0018036:-237279 Msa1363400:CDS
TTCATTGTTCTGAGCCAGGG+TGG 0.625682 tig0018036:-237063 Msa1363400:CDS
ACAAACCCATGTGATTTGGT+AGG 0.627809 tig0018036:+236689 None:intergenic
AGGAAGAAGCGAATTTGTGT+GGG 0.628251 tig0018036:+239227 None:intergenic
CGATGAAATATACGCTGCAA+CGG 0.630366 tig0018036:-237563 Msa1363400:CDS
TGTGGTTCAGAATAATAAGG+AGG 0.634977 tig0018036:-236972 Msa1363400:CDS
GATCGTATTGTGATGAGTGG+TGG 0.635293 tig0018036:-238549 Msa1363400:CDS
TACCCTGGATAGTAAGGAGT+AGG 0.653482 tig0018036:+238462 None:intergenic
CCTGATCGTATTGTGATGAG+TGG 0.663504 tig0018036:-238552 Msa1363400:CDS
GAACAATGAAATGAAACACC+AGG 0.667249 tig0018036:+237076 None:intergenic
CTATGCTTATGAAACTTGGG+TGG 0.667408 tig0018036:+237533 None:intergenic
TTCACCATGTCCATCACCAG+TGG 0.671313 tig0018036:+239072 None:intergenic
GACTGTAAACTATGTGAACG+AGG 0.673179 tig0018036:+237467 None:intergenic
TCTAGGAATGAAGTATGGGG+TGG 0.678564 tig0018036:+239299 None:intergenic
TTTGTGTGGATGGATTTGAG+AGG 0.680530 tig0018036:-237178 Msa1363400:CDS
TTTGCGCGCACAATTTACAA+CGG 0.684836 tig0018036:+237384 None:intergenic
ATAGCCACTGGTGATGGACA+TGG 0.685257 tig0018036:-239076 Msa1363400:CDS
CCCATTTGGATAACACCATG+AGG 0.688522 tig0018036:+238986 None:intergenic
TTTCACCTACCAAATCACAT+GGG 0.690480 tig0018036:-236694 Msa1363400:three_prime_UTR
GCTTTAACAAGAGGTGACTG+AGG 0.694413 tig0018036:+236842 None:intergenic
TAACACACTCTAAACCACCC+TGG 0.698750 tig0018036:+237049 None:intergenic
ATGTCTAGGAATGAAGTATG+GGG 0.756503 tig0018036:+239296 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATATGAATTTTTAC+AGG - tig0018036:237344-237363 Msa1363400:CDS 10.0%
!! TAGACTATAGTAATTAATAA+TGG - tig0018036:236832-236851 Msa1363400:CDS 15.0%
!! AGACTATAGTAATTAATAAT+GGG - tig0018036:236833-236852 Msa1363400:CDS 15.0%
!! AAAAATAAAGATGAAGAAAA+GGG + tig0018036:237556-237575 None:intergenic 15.0%
!! GAATATTAAAGTAATAACTA+AGG + tig0018036:237853-237872 None:intergenic 15.0%
!!! AATGTTTTTGTTTTATTTTC+TGG + tig0018036:238050-238069 None:intergenic 15.0%
!! ATTAATTGTTTACAAAGTAA+TGG - tig0018036:238761-238780 Msa1363400:CDS 15.0%
!!! ATTTGTTGATTTATTAGTTT+GGG - tig0018036:239207-239226 Msa1363400:five_prime_UTR 15.0%
!! TAATAGAATTTGTAATTGTA+AGG - tig0018036:239315-239334 Msa1363400:five_prime_UTR 15.0%
!! TTAGTAGTCCAAATATAAAA+AGG + tig0018036:236593-236612 None:intergenic 20.0%
!! AGTACATAATTTCAAAGAAA+TGG - tig0018036:237211-237230 Msa1363400:CDS 20.0%
!! AAAATAAAGATGAAGAAAAG+GGG + tig0018036:237555-237574 None:intergenic 20.0%
!! GAAAAATAAAGATGAAGAAA+AGG + tig0018036:237557-237576 None:intergenic 20.0%
!! AAAATAAATAATTGCTCTGA+TGG + tig0018036:237997-238016 None:intergenic 20.0%
!!! TTATTTTCTGGTTTGTATAT+AGG + tig0018036:238038-238057 None:intergenic 20.0%
!! TAGAATATTATATGACTATG+TGG + tig0018036:238087-238106 None:intergenic 20.0%
!! TTCATTGATGAAATTTACAA+CGG + tig0018036:238366-238385 None:intergenic 20.0%
!! TAAACAATTAATTCCAACTT+TGG + tig0018036:238753-238772 None:intergenic 20.0%
!!! GATTTGTTGATTTATTAGTT+TGG - tig0018036:239206-239225 Msa1363400:five_prime_UTR 20.0%
!! TAATTGTAAGGTTATTTGTT+TGG - tig0018036:239327-239346 Msa1363400:five_prime_UTR 20.0%
!! TGAACCTTCCTTTTTATATT+TGG - tig0018036:236582-236601 Msa1363400:three_prime_UTR 25.0%
! TAGTCCAAATATAAAAAGGA+AGG + tig0018036:236589-236608 None:intergenic 25.0%
! TAAAAATATACTGCATGGAT+AGG + tig0018036:237086-237105 None:intergenic 25.0%
!! TCAAGTTTAAGATATGATGA+TGG + tig0018036:237633-237652 None:intergenic 25.0%
!! TTTTTCATATGCATCTTCTA+AGG + tig0018036:238252-238271 None:intergenic 25.0%
! AATTGTTTACAAAGTAATGG+TGG - tig0018036:238764-238783 Msa1363400:CDS 25.0%
! ATTTGTGGTTCAGAATAATA+AGG - tig0018036:238994-239013 Msa1363400:CDS 25.0%
! ATGCTAAATAATTCAAGTAG+TGG + tig0018036:239152-239171 None:intergenic 25.0%
! TTCTGTTACTCAAATTTGTA+AGG - tig0018036:239372-239391 Msa1363400:five_prime_UTR 25.0%
AATGTCTAGGAATGAAGTAT+GGG + tig0018036:236677-236696 None:intergenic 30.0%
! AACAACAACAAAAAAGTACG+AGG + tig0018036:236765-236784 None:intergenic 30.0%
GAAACATCATCTTACTTTGA+TGG - tig0018036:236917-236936 Msa1363400:CDS 30.0%
!!! GATTTTTGGTTGGATGAAAA+GGG + tig0018036:236964-236983 None:intergenic 30.0%
AGAGCTAAAAATATACTGCA+TGG + tig0018036:237091-237110 None:intergenic 30.0%
!! CTACTGATTTGGTTCAAAAT+TGG - tig0018036:237147-237166 Msa1363400:CDS 30.0%
! CAAAGAAATGGCTAATTTTC+AGG - tig0018036:237223-237242 Msa1363400:CDS 30.0%
!! GCTAATTTTCAGGATTATCA+TGG - tig0018036:237233-237252 Msa1363400:CDS 30.0%
! ATATGAATTTTTACAGGCTG+TGG - tig0018036:237350-237369 Msa1363400:CDS 30.0%
! AAATTCATGTCTAGAACAAG+AGG - tig0018036:237375-237394 Msa1363400:CDS 30.0%
TAATAACTAAGGCTGATTAG+TGG + tig0018036:237842-237861 None:intergenic 30.0%
GAAGATAACATCAGAATCAA+AGG - tig0018036:238278-238297 Msa1363400:intron 30.0%
CGTATATTTCATCGCTTATT+AGG + tig0018036:238400-238419 None:intergenic 30.0%
TTACAGTCTTTCAAAAGACA+TGG - tig0018036:238517-238536 Msa1363400:CDS 30.0%
TACAGTCTTTCAAAAGACAT+GGG - tig0018036:238518-238537 Msa1363400:CDS 30.0%
!! TTATACCAACTCTAAAACCA+GGG + tig0018036:238547-238566 None:intergenic 30.0%
!! ATTATACCAACTCTAAAACC+AGG + tig0018036:238548-238567 None:intergenic 30.0%
! ATGTACAGAATTTTCACTAG+TGG - tig0018036:238722-238741 Msa1363400:CDS 30.0%
AGCTACATTTGAATCAGAAT+TGG - tig0018036:238826-238845 Msa1363400:CDS 30.0%
TTGAATCAGAATTGGAACTT+TGG - tig0018036:238834-238853 Msa1363400:intron 30.0%
GTTAAGATTAATGTTTCACC+TGG - tig0018036:238875-238894 Msa1363400:intron 30.0%
ATGTGCAAATTGCTTTACAA+AGG - tig0018036:238963-238982 Msa1363400:intron 30.0%
ACAAAGGATTAGATCATTTG+TGG - tig0018036:238979-238998 Msa1363400:CDS 30.0%
TCAGAATAATAAGGAGGTTA+TGG - tig0018036:239003-239022 Msa1363400:CDS 30.0%
!!! CATCAAACCTTCTTGTTTTA+AGG + tig0018036:239078-239097 None:intergenic 30.0%
ATGTTGTGTTCCTTTAATGT+TGG - tig0018036:239237-239256 Msa1363400:five_prime_UTR 30.0%
TGTTGTGTTCCTTTAATGTT+GGG - tig0018036:239238-239257 Msa1363400:five_prime_UTR 30.0%
! AACAGAACACAGATATTTTC+TGG + tig0018036:239359-239378 None:intergenic 30.0%
! ATTTGCTAGCTAGACTCTTA+CGG - tig0018036:236540-236559 Msa1363400:three_prime_UTR 35.0%
AAAAAGGAAGGTTCACATGA+AGG + tig0018036:236577-236596 None:intergenic 35.0%
ATGTCTAGGAATGAAGTATG+GGG + tig0018036:236676-236695 None:intergenic 35.0%
CAATGTCTAGGAATGAAGTA+TGG + tig0018036:236678-236697 None:intergenic 35.0%
AGTTAGAGATTGCAATGTCT+AGG + tig0018036:236690-236709 None:intergenic 35.0%
TCTTAGACAACAATTGAGGT+TGG + tig0018036:236874-236893 None:intergenic 35.0%
GCTATCTTAGACAACAATTG+AGG + tig0018036:236878-236897 None:intergenic 35.0%
CATCATCTTACTTTGATGGA+TGG - tig0018036:236921-236940 Msa1363400:CDS 35.0%
!!! GGATTTTTGGTTGGATGAAA+AGG + tig0018036:236965-236984 None:intergenic 35.0%
! GATAACACCATGAGGATTTT+TGG + tig0018036:236978-236997 None:intergenic 35.0%
CAGGTATATATCAAGCTTTG+AGG - tig0018036:237019-237038 Msa1363400:CDS 35.0%
! TTTCCAGCTTACTACTGATT+TGG - tig0018036:237136-237155 Msa1363400:CDS 35.0%
!! TCCTTCTAGAGTACAAATTG+AGG + tig0018036:237192-237211 None:intergenic 35.0%
TGAATTGAATGTACATACCC+TGG + tig0018036:237525-237544 None:intergenic 35.0%
TTTATAGTGCAATCAGCTAC+AGG - tig0018036:237669-237688 Msa1363400:CDS 35.0%
TCACTGCACTGTAAAGTAAA+CGG - tig0018036:237748-237767 Msa1363400:CDS 35.0%
!! CAGTAAAACATTTTCAAGCG+CGG - tig0018036:237771-237790 Msa1363400:CDS 35.0%
!!! TGGAACTGACTTTTTCAACA+AGG - tig0018036:237908-237927 Msa1363400:intron 35.0%
!!! GGAACTGACTTTTTCAACAA+GGG - tig0018036:237909-237928 Msa1363400:intron 35.0%
GCAGATTTGATAGAGATTTG+AGG - tig0018036:238156-238175 Msa1363400:intron 35.0%
GATTTGATAGAGATTTGAGG+TGG - tig0018036:238159-238178 Msa1363400:intron 35.0%
GATTCTGATGTTATCTTCTG+TGG + tig0018036:238276-238295 None:intergenic 35.0%
ACAAATCCCTCAAATCCATT+AGG - tig0018036:238311-238330 Msa1363400:intron 35.0%
AAATCCATTAGGCACAGTTA+TGG - tig0018036:238322-238341 Msa1363400:intron 35.0%
CAGCTATGCTTATGAAACTT+GGG + tig0018036:238442-238461 None:intergenic 35.0%
TCAGCTATGCTTATGAAACT+TGG + tig0018036:238443-238462 None:intergenic 35.0%
AAACTATGTGAACGAGGTTA+CGG + tig0018036:238499-238518 None:intergenic 35.0%
AACACAGACACAATACTTGA+TGG - tig0018036:238631-238650 Msa1363400:intron 35.0%
!! ACTAGTGGATTAACCAAAGT+TGG - tig0018036:238737-238756 Msa1363400:CDS 35.0%
GAACAATGAAATGAAACACC+AGG + tig0018036:238896-238915 None:intergenic 35.0%
TAGAGTGTGTTATGCTAACA+TGG - tig0018036:238931-238950 Msa1363400:intron 35.0%
TGTGGTTCAGAATAATAAGG+AGG - tig0018036:238997-239016 Msa1363400:CDS 35.0%
GGTTAAGCCTTAAAACAAGA+AGG - tig0018036:239068-239087 Msa1363400:CDS 35.0%
GTTGTGTTCCTTTAATGTTG+GGG - tig0018036:239239-239258 Msa1363400:five_prime_UTR 35.0%
TTGTGTTCCTTTAATGTTGG+GGG - tig0018036:239240-239259 Msa1363400:five_prime_UTR 35.0%
AAAAATGCCCCCAACATTAA+AGG + tig0018036:239250-239269 None:intergenic 35.0%
! TTTTCACCTACCAAATCACA+TGG - tig0018036:239274-239293 Msa1363400:five_prime_UTR 35.0%
TTTCACCTACCAAATCACAT+GGG - tig0018036:239275-239294 Msa1363400:five_prime_UTR 35.0%
AGGAAGAAGCGAATTTGTGT+GGG + tig0018036:236745-236764 None:intergenic 40.0%
! TTGTTGTCTAAGATAGCCAC+TGG - tig0018036:236881-236900 Msa1363400:CDS 40.0%
CATCCAACCAAAAATCCTCA+TGG - tig0018036:236968-236987 Msa1363400:CDS 40.0%
!!! ACACCATGAGGATTTTTGGT+TGG + tig0018036:236974-236993 None:intergenic 40.0%
!! TCCTCATGGTGTTATCCAAA+TGG - tig0018036:236982-237001 Msa1363400:CDS 40.0%
!! CCTCATGGTGTTATCCAAAT+GGG - tig0018036:236983-237002 Msa1363400:CDS 40.0%
GAACCAAATCAGTAGTAAGC+TGG + tig0018036:237142-237161 None:intergenic 40.0%
GAGTACAAATTGAGGCTTCT+GGG + tig0018036:237184-237203 None:intergenic 40.0%
AGAGTACAAATTGAGGCTTC+TGG + tig0018036:237185-237204 None:intergenic 40.0%
GCCTCAATTTGTACTCTAGA+AGG - tig0018036:237188-237207 Msa1363400:CDS 40.0%
!!! AGATCCTGGTGATGCTTTTT+TGG - tig0018036:237482-237501 Msa1363400:CDS 40.0%
TGTACATACCCTGGATAGTA+AGG + tig0018036:237516-237535 None:intergenic 40.0%
TCCATCAAAATTCACTACCC+TGG + tig0018036:237892-237911 None:intergenic 40.0%
TTTGCACTTTCGCAGATAAC+TGG + tig0018036:238206-238225 None:intergenic 40.0%
!! ACTGTGCCTAATGGATTTGA+GGG + tig0018036:238320-238339 None:intergenic 40.0%
!! AACTGTGCCTAATGGATTTG+AGG + tig0018036:238321-238340 None:intergenic 40.0%
CAACGGTTCTTAATGTGCTT+CGG + tig0018036:238349-238368 None:intergenic 40.0%
CGATGAAATATACGCTGCAA+CGG - tig0018036:238406-238425 Msa1363400:intron 40.0%
CTATGCTTATGAAACTTGGG+TGG + tig0018036:238439-238458 None:intergenic 40.0%
GACTGTAAACTATGTGAACG+AGG + tig0018036:238505-238524 None:intergenic 40.0%
TTTGCGCGCACAATTTACAA+CGG + tig0018036:238588-238607 None:intergenic 40.0%
! TTCTTGCTGAAAGTGCAAAG+AGG - tig0018036:238690-238709 Msa1363400:intron 40.0%
!!! GTAATGGTGGACTTTTTGTG+TGG - tig0018036:238777-238796 Msa1363400:CDS 40.0%
! TTTGTGTGGATGGATTTGAG+AGG - tig0018036:238791-238810 Msa1363400:CDS 40.0%
GGATTTGAGAGGACTTCTTA+AGG - tig0018036:238802-238821 Msa1363400:CDS 40.0%
! TCATTTCATTGTTCTGAGCC+AGG - tig0018036:238902-238921 Msa1363400:intron 40.0%
! CATTTCATTGTTCTGAGCCA+GGG - tig0018036:238903-238922 Msa1363400:intron 40.0%
AGAAGAACACTAAACCTTGC+TGG - tig0018036:239032-239051 Msa1363400:CDS 40.0%
CTCAAATTACTATGCCAGCA+AGG + tig0018036:239049-239068 None:intergenic 40.0%
CTTGCTGGCATAGTAATTTG+AGG - tig0018036:239047-239066 Msa1363400:CDS 40.0%
!! CAAGTAGTGGCTTTAACAAG+AGG + tig0018036:239139-239158 None:intergenic 40.0%
!! ACAAACCCATGTGATTTGGT+AGG + tig0018036:239283-239302 None:intergenic 40.0%
TACCAAATCACATGGGTTTG+TGG - tig0018036:239282-239301 Msa1363400:five_prime_UTR 40.0%
GAAGGTTCACATGAAGGTGA+TGG + tig0018036:236571-236590 None:intergenic 45.0%
TCTAGGAATGAAGTATGGGG+TGG + tig0018036:236673-236692 None:intergenic 45.0%
GAGGAAGAAGCGAATTTGTG+TGG + tig0018036:236746-236765 None:intergenic 45.0%
! TCTAAGATAGCCACTGGTGA+TGG - tig0018036:236887-236906 Msa1363400:CDS 45.0%
CCCATTTGGATAACACCATG+AGG + tig0018036:236986-237005 None:intergenic 45.0%
GATTCTCTGCAAGACCCATT+TGG + tig0018036:237000-237019 None:intergenic 45.0%
AATGGGTCTTGCAGAGAATC+AGG - tig0018036:237000-237019 Msa1363400:CDS 45.0%
CCACTCACATTTCTGAACTC+TGG + tig0018036:237263-237282 None:intergenic 45.0%
CCAGAGTTCAGAAATGTGAG+TGG - tig0018036:237260-237279 Msa1363400:CDS 45.0%
CCACTCATCACAATACGATC+AGG + tig0018036:237420-237439 None:intergenic 45.0%
CCTGATCGTATTGTGATGAG+TGG - tig0018036:237417-237436 Msa1363400:CDS 45.0%
GATCGTATTGTGATGAGTGG+TGG - tig0018036:237420-237439 Msa1363400:CDS 45.0%
ATCTGCCAAACAAAAGGCAG+TGG + tig0018036:237466-237485 None:intergenic 45.0%
ACCAGGATCTGCCAAACAAA+AGG + tig0018036:237472-237491 None:intergenic 45.0%
TGCCTACTCCTTACTATCCA+GGG - tig0018036:237505-237524 Msa1363400:CDS 45.0%
TACCCTGGATAGTAAGGAGT+AGG + tig0018036:237510-237529 None:intergenic 45.0%
TCCAGTCATCATTAGAAGCC+AGG - tig0018036:237871-237890 Msa1363400:intron 45.0%
CCAGTCATCATTAGAAGCCA+GGG - tig0018036:237872-237891 Msa1363400:intron 45.0%
! GCCAGGGTAGTGAATTTTGA+TGG - tig0018036:237888-237907 Msa1363400:intron 45.0%
! AGAGATTTGAGGTGGAGAAC+AGG - tig0018036:238167-238186 Msa1363400:intron 45.0%
TCAAAAGACATGGGATTCCC+TGG - tig0018036:238527-238546 Msa1363400:CDS 45.0%
!!! GGATTCCCTGGTTTTAGAGT+TGG - tig0018036:238539-238558 Msa1363400:CDS 45.0%
!!! TGGTGGACTTTTTGTGTGGA+TGG - tig0018036:238781-238800 Msa1363400:CDS 45.0%
TAACACACTCTAAACCACCC+TGG + tig0018036:238923-238942 None:intergenic 45.0%
GACTGAGGAAATGGAGAATG+AGG + tig0018036:239115-239134 None:intergenic 45.0%
ACAAGAGGTGACTGAGGAAA+TGG + tig0018036:239124-239143 None:intergenic 45.0%
GCTTTAACAAGAGGTGACTG+AGG + tig0018036:239130-239149 None:intergenic 45.0%
CACCACAAACCCATGTGATT+TGG + tig0018036:239287-239306 None:intergenic 45.0%
!!! TAATTGATAATATTTATAAT+TGG + tig0018036:237579-237598 None:intergenic 5.0%
!! ATAGCCACTGGTGATGGACA+TGG - tig0018036:236893-236912 Msa1363400:CDS 50.0%
TTCACCATGTCCATCACCAG+TGG + tig0018036:236900-236919 None:intergenic 50.0%
! TGAGGCCACTGCCTTTTGTT+TGG - tig0018036:237458-237477 Msa1363400:CDS 50.0%
!! GCCTTTTGTTTGGCAGATCC+TGG - tig0018036:237468-237487 Msa1363400:CDS 50.0%
!! GGCACCAAAAAAGCATCACC+AGG + tig0018036:237489-237508 None:intergenic 50.0%
GTGCCTACTCCTTACTATCC+AGG - tig0018036:237504-237523 Msa1363400:CDS 50.0%
CAGTGCAGTGAGTTGCAAGT+CGG + tig0018036:237739-237758 None:intergenic 50.0%
CCCTGGCTTCTAATGATGAC+TGG + tig0018036:237875-237894 None:intergenic 50.0%
CGGTCCATAACTGTGCCTAA+TGG + tig0018036:238329-238348 None:intergenic 50.0%
! GCGCGCAAAATGTCGAGTTT+TGG - tig0018036:238599-238618 Msa1363400:CDS 50.0%
! TTCATTGTTCTGAGCCAGGG+TGG - tig0018036:238906-238925 Msa1363400:intron 50.0%
! GTGATGAGTGGTGGAGCAAC+TGG - tig0018036:237429-237448 Msa1363400:CDS 55.0%
TGGAGCAACTGGAGCACATG+AGG - tig0018036:237440-237459 Msa1363400:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0018036 gene 236529 239462 236529 ID=Msa1363400;Name=Msa1363400
tig0018036 mRNA 236529 239462 236529 ID=Msa1363400-mRNA-1;Parent=Msa1363400;Name=Msa1363400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=322|1|1|1|1|1|4|303|487
tig0018036 exon 236529 237831 236529 ID=Msa1363400-mRNA-1:exon:13533;Parent=Msa1363400-mRNA-1
tig0018036 exon 238465 238625 238465 ID=Msa1363400-mRNA-1:exon:13532;Parent=Msa1363400-mRNA-1
tig0018036 exon 238717 238848 238717 ID=Msa1363400-mRNA-1:exon:13531;Parent=Msa1363400-mRNA-1
tig0018036 exon 238970 239462 238970 ID=Msa1363400-mRNA-1:exon:13530;Parent=Msa1363400-mRNA-1
tig0018036 five_prime_UTR 239141 239462 239141 ID=Msa1363400-mRNA-1:five_prime_utr;Parent=Msa1363400-mRNA-1
tig0018036 CDS 238970 239140 238970 ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1
tig0018036 CDS 238717 238848 238717 ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1
tig0018036 CDS 238465 238625 238465 ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1
tig0018036 CDS 236832 237831 236832 ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1
tig0018036 three_prime_UTR 236529 236831 236529 ID=Msa1363400-mRNA-1:three_prime_utr;Parent=Msa1363400-mRNA-1
Gene Sequence

>Msa1363400

ATGGGACTTGTGAGCATGAACCAACCTCAATTGTTGTCTAAGATAGCCACTGGTGATGGACATGGTGAAACATCATCTTACTTTGATGGATGGAAAGCTTATGATAAAGACCCTTTTCATCCAACCAAAAATCCTCATGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTACTGATTTGGTTCAAAATTGGATAATGAGTAACCCAGAAGCCTCAATTTGTACTCTAGAAGGAGTACATAATTTCAAAGAAATGGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAATAGAGTGACATTTAATCCTGATCGTATTGTGATGAGTGGTGGAGCAACTGGAGCACATGAGGCCACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTGCCTACTCCTTACTATCCAGGATTTGATAGAGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTATCTGCGAAAGTGCAAACAATTTCAAATTAACAAAACAAGCCTTAGAAGATGCATATGAAAAAGCCACAGAAGATAACATCAGAATCAAAGGTTTACTCATAACAAATCCCTCAAATCCATTAGGCACAGTTATGGACCGAAGCACATTAAGAACCGTTGTAAATTTCATCAATGAAAAGCGTATTCACCTAATAAGCGATGAAATATACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATAGCTGAAATATTAGAACATGACACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCAAAAGACATGGGATTCCCTGGTTTTAGAGTTGGTATAATATACTCTTACAATGATACCGTTGTAAATTGTGCGCGCAAAATGTCGAGTTTTGGATTAGTTTCAACACAGACACAATACTTGATGGCAAAAATGCTATCTGATGATGAATTTGTTGAAAAGTTTCTTGCTGAAAGTGCAAAGAGGTTAGCACAAATGTACAGAATTTTCACTAGTGGATTAACCAAAGTTGGAATTAATTGTTTACAAAGTAATGGTGGACTTTTTGTGTGGATGGATTTGAGAGGACTTCTTAAGGAAGCTACATTTGAATCAGAATTGGAACTTTGGAGAGTGATTATTCATGAAGTTAAGATTAATGTTTCACCTGGTGTTTCATTTCATTGTTCTGAGCCAGGGTGGTTTAGAGTGTGTTATGCTAACATGGATGATAGAGATGTGCAAATTGCTTTACAAAGGATTAGATCATTTGTGGTTCAGAATAATAAGGAGGTTATGGTGTCTGAGAAGAACACTAAACCTTGCTGGCATAGTAATTTGAGGTTAAGCCTTAAAACAAGAAGGTTTGATGATATTGTAATGTCACCTCATTCTCCATTTCCTCAGTCACCTCTTGTTAAAGCCACTACTTGA

Protein sequence

>Msa1363400

MGLVSMNQPQLLSKIATGDGHGETSSYFDGWKAYDKDPFHPTKNPHGVIQMGLAENQLTTDLVQNWIMSNPEASICTLEGVHNFKEMANFQDYHGLPEFRNAVAKFMSRTRGNRVTFNPDRIVMSGGATGAHEATAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVKLVPVICESANNFKLTKQALEDAYEKATEDNIRIKGLLITNPSNPLGTVMDRSTLRTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEILEHDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDTVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVEKFLAESAKRLAQMYRIFTSGLTKVGINCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHEVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALQRIRSFVVQNNKEVMVSEKNTKPCWHSNLRLSLKTRRFDDIVMSPHSPFPQSPLVKATT*