Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1363400 | XP_013447110.1 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1363400 | sp|P31531|1A1C_SOYBN | 83.539 | 486 | 77 | 2 | 1 | 486 | 1 | 483 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1363400 | A0A072TUM5 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1363400 | Msa1386670 | 0.998916 | 9.828888e-282 | -8.615850e-47 |
Msa0306600 | Msa1363400 | 0.987789 | 1.531271e-171 | -8.615850e-47 |
Msa0576890 | Msa1363400 | 0.837816 | 4.157276e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1363400 | MtrunA17_Chr8g0387481 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Msa1363400 | MtrunA17_Chr7g0248681 | 65.784 | 491 | 156 | 4 | 1 | 486 | 1 | 484 | 0.0 | 677 |
Msa1363400 | MtrunA17_Chr8g0348351 | 64.583 | 480 | 159 | 3 | 10 | 486 | 9 | 480 | 0.0 | 669 |
Msa1363400 | MtrunA17_Chr4g0054371 | 55.011 | 449 | 194 | 3 | 10 | 450 | 2 | 450 | 0.0 | 544 |
Msa1363400 | MtrunA17_Chr3g0135251 | 53.571 | 448 | 199 | 4 | 11 | 451 | 1 | 446 | 0.0 | 528 |
Msa1363400 | MtrunA17_Chr5g0400831 | 54.503 | 433 | 191 | 4 | 10 | 436 | 2 | 434 | 0.0 | 527 |
Msa1363400 | MtrunA17_Chr8g0389311 | 56.000 | 425 | 178 | 2 | 12 | 436 | 12 | 427 | 0.0 | 516 |
Msa1363400 | MtrunA17_Chr8g0389321 | 56.000 | 425 | 178 | 2 | 12 | 436 | 12 | 427 | 0.0 | 516 |
Msa1363400 | MtrunA17_Chr6g0488041 | 55.079 | 443 | 192 | 5 | 1 | 441 | 1 | 438 | 0.0 | 516 |
Msa1363400 | MtrunA17_Chr6g0475681 | 42.353 | 425 | 241 | 2 | 12 | 435 | 104 | 525 | 5.73e-136 | 402 |
Msa1363400 | MtrunA17_Chr5g0398431 | 40.541 | 407 | 239 | 1 | 25 | 431 | 85 | 488 | 5.42e-120 | 360 |
Msa1363400 | MtrunA17_Chr8g0345201 | 23.077 | 351 | 243 | 12 | 94 | 422 | 158 | 503 | 4.39e-17 | 84.0 |
Msa1363400 | MtrunA17_Chr5g0412871 | 24.257 | 404 | 265 | 17 | 39 | 408 | 42 | 438 | 4.17e-16 | 80.9 |
Msa1363400 | MtrunA17_Chr7g0267911 | 22.346 | 358 | 235 | 15 | 95 | 436 | 135 | 465 | 1.07e-15 | 79.3 |
Msa1363400 | MtrunA17_Chr4g0004131 | 22.599 | 354 | 234 | 14 | 87 | 432 | 61 | 382 | 6.77e-15 | 76.3 |
Msa1363400 | MtrunA17_Chr2g0324801 | 23.529 | 374 | 228 | 16 | 89 | 438 | 42 | 381 | 1.01e-13 | 72.8 |
Msa1363400 | MtrunA17_Chr3g0114811 | 23.559 | 399 | 241 | 16 | 46 | 422 | 86 | 442 | 1.97e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1363400 | AT4G11280.1 | 66.191 | 491 | 143 | 4 | 11 | 487 | 14 | 495 | 0.0 | 661 |
Msa1363400 | AT3G61510.1 | 62.062 | 485 | 170 | 3 | 10 | 485 | 9 | 488 | 0.0 | 645 |
Msa1363400 | AT1G01480.1 | 60.241 | 498 | 183 | 6 | 1 | 485 | 1 | 496 | 0.0 | 643 |
Msa1363400 | AT4G37770.1 | 58.275 | 429 | 172 | 3 | 11 | 435 | 3 | 428 | 0.0 | 550 |
Msa1363400 | AT2G22810.1 | 55.349 | 430 | 190 | 2 | 12 | 439 | 4 | 433 | 0.0 | 518 |
Msa1363400 | AT5G65800.1 | 54.128 | 436 | 197 | 2 | 12 | 445 | 4 | 438 | 2.39e-180 | 514 |
Msa1363400 | AT3G49700.1 | 54.005 | 437 | 198 | 2 | 12 | 446 | 4 | 439 | 3.07e-180 | 513 |
Msa1363400 | AT4G08040.1 | 53.613 | 429 | 197 | 2 | 11 | 439 | 1 | 427 | 8.49e-180 | 512 |
Msa1363400 | AT4G26200.1 | 56.000 | 425 | 185 | 2 | 12 | 435 | 18 | 441 | 5.27e-179 | 509 |
Msa1363400 | AT1G01480.2 | 58.163 | 392 | 149 | 6 | 107 | 485 | 1 | 390 | 5.90e-168 | 479 |
Msa1363400 | AT5G51690.1 | 42.822 | 411 | 231 | 2 | 25 | 434 | 82 | 489 | 1.23e-125 | 375 |
Msa1363400 | AT1G62960.1 | 42.615 | 413 | 227 | 6 | 22 | 432 | 143 | 547 | 1.07e-124 | 375 |
Msa1363400 | AT5G51690.2 | 44.068 | 354 | 195 | 1 | 79 | 432 | 14 | 364 | 3.99e-114 | 341 |
Msa1363400 | AT2G22250.1 | 24.533 | 375 | 229 | 16 | 80 | 432 | 74 | 416 | 7.83e-20 | 92.0 |
Msa1363400 | AT2G22250.3 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.17e-19 | 92.0 |
Msa1363400 | AT2G22250.2 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.17e-19 | 92.0 |
Msa1363400 | AT1G23310.2 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 3.94e-18 | 87.0 |
Msa1363400 | AT1G23310.1 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 4.25e-18 | 87.4 |
Msa1363400 | AT1G70580.4 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1363400 | AT1G70580.2 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1363400 | AT1G70580.3 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1363400 | AT1G70580.1 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1363400 | AT1G17290.1 | 25.952 | 289 | 196 | 10 | 94 | 368 | 177 | 461 | 1.42e-17 | 85.9 |
Msa1363400 | AT1G72330.1 | 23.562 | 365 | 247 | 13 | 94 | 434 | 174 | 530 | 1.32e-16 | 82.8 |
Msa1363400 | AT5G36160.1 | 22.826 | 368 | 239 | 14 | 89 | 440 | 79 | 417 | 3.30e-15 | 78.2 |
Msa1363400 | AT1G72330.3 | 22.513 | 382 | 251 | 13 | 90 | 434 | 170 | 543 | 6.65e-15 | 77.8 |
Msa1363400 | AT1G72330.2 | 26.860 | 242 | 162 | 8 | 90 | 323 | 170 | 404 | 1.64e-14 | 75.9 |
Msa1363400 | AT1G77670.1 | 22.980 | 396 | 255 | 15 | 59 | 432 | 66 | 433 | 1.17e-11 | 67.0 |
Find 116 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTACTGATTTGGTTCAAAAT+TGG | 0.180902 | tig0018036:-238822 | Msa1363400:CDS |
CGTATATTTCATCGCTTATT+AGG | 0.237518 | tig0018036:+237572 | None:intergenic |
TAGACTATAGTAATTAATAA+TGG | 0.275952 | tig0018036:-239137 | Msa1363400:exon |
AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | tig0018036:+238787 | None:intergenic |
GATTTGTTGATTTATTAGTT+TGG | 0.286489 | tig0018036:-236763 | Msa1363400:three_prime_UTR |
TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | tig0018036:+237766 | None:intergenic |
AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | tig0018036:-237802 | Msa1363400:CDS |
CAATGTCTAGGAATGAAGTA+TGG | 0.312104 | tig0018036:+239294 | None:intergenic |
ATTTGTTGATTTATTAGTTT+GGG | 0.312718 | tig0018036:-236762 | Msa1363400:three_prime_UTR |
TTAGTAGTCCAAATATAAAA+AGG | 0.318247 | tig0018036:+239379 | None:intergenic |
TTTCCAGCTTACTACTGATT+TGG | 0.334888 | tig0018036:-238833 | Msa1363400:intron |
GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | tig0018036:-237370 | Msa1363400:CDS |
CACCACAAACCCATGTGATT+TGG | 0.343608 | tig0018036:+236685 | None:intergenic |
AGCTACATTTGAATCAGAAT+TGG | 0.358107 | tig0018036:-237143 | Msa1363400:CDS |
AGACTATAGTAATTAATAAT+GGG | 0.359076 | tig0018036:-239136 | Msa1363400:exon |
ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | tig0018036:-236975 | Msa1363400:CDS |
TAATAGAATTTGTAATTGTA+AGG | 0.374758 | tig0018036:-236654 | Msa1363400:three_prime_UTR |
TCCTCATGGTGTTATCCAAA+TGG | 0.374967 | tig0018036:-238987 | Msa1363400:CDS |
AGTACATAATTTCAAAGAAA+TGG | 0.381772 | tig0018036:-238758 | Msa1363400:CDS |
TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | tig0018036:-236966 | Msa1363400:CDS |
TTCTGTTACTCAAATTTGTA+AGG | 0.384841 | tig0018036:-236597 | Msa1363400:three_prime_UTR |
AACACAGACACAATACTTGA+TGG | 0.385707 | tig0018036:-237338 | Msa1363400:CDS |
GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | tig0018036:-238781 | Msa1363400:CDS |
ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | tig0018036:+236848 | None:intergenic |
TGTTGTGTTCCTTTAATGTT+GGG | 0.388781 | tig0018036:-236731 | Msa1363400:three_prime_UTR |
TCAGCTATGCTTATGAAACT+TGG | 0.389874 | tig0018036:+237529 | None:intergenic |
TAAACAATTAATTCCAACTT+TGG | 0.390119 | tig0018036:+237219 | None:intergenic |
TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | tig0018036:-237067 | Msa1363400:CDS |
ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | tig0018036:-237232 | Msa1363400:CDS |
GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | tig0018036:+238788 | None:intergenic |
GAAACATCATCTTACTTTGA+TGG | 0.397210 | tig0018036:-239052 | Msa1363400:CDS |
AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | tig0018036:-238969 | Msa1363400:intron |
GATTCTCTGCAAGACCCATT+TGG | 0.400674 | tig0018036:+238972 | None:intergenic |
GTGCCTACTCCTTACTATCC+AGG | 0.402112 | tig0018036:-238465 | Msa1363400:CDS |
GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | tig0018036:-237167 | Msa1363400:CDS |
TAATTGTAAGGTTATTTGTT+TGG | 0.410239 | tig0018036:-236642 | Msa1363400:three_prime_UTR |
TTGAATCAGAATTGGAACTT+TGG | 0.414840 | tig0018036:-237135 | Msa1363400:CDS |
CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | tig0018036:+237643 | None:intergenic |
CAACGGTTCTTAATGTGCTT+CGG | 0.426255 | tig0018036:+237623 | None:intergenic |
ATGTTGTGTTCCTTTAATGT+TGG | 0.439273 | tig0018036:-236732 | Msa1363400:three_prime_UTR |
AACTGTGCCTAATGGATTTG+AGG | 0.440159 | tig0018036:+237651 | None:intergenic |
GTGATGAGTGGTGGAGCAAC+TGG | 0.440195 | tig0018036:-238540 | Msa1363400:CDS |
CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | tig0018036:-236922 | Msa1363400:CDS |
ACAAAGGATTAGATCATTTG+TGG | 0.445312 | tig0018036:-236990 | Msa1363400:CDS |
ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | tig0018036:-237208 | Msa1363400:CDS |
TGTACATACCCTGGATAGTA+AGG | 0.457320 | tig0018036:+238456 | None:intergenic |
TACCAAATCACATGGGTTTG+TGG | 0.464212 | tig0018036:-236687 | Msa1363400:three_prime_UTR |
AAATCCATTAGGCACAGTTA+TGG | 0.479153 | tig0018036:-237647 | Msa1363400:CDS |
TCAAAAGACATGGGATTCCC+TGG | 0.480186 | tig0018036:-237442 | Msa1363400:CDS |
ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | tig0018036:+237652 | None:intergenic |
CATCATCTTACTTTGATGGA+TGG | 0.487153 | tig0018036:-239048 | Msa1363400:CDS |
CCTCATGGTGTTATCCAAAT+GGG | 0.487603 | tig0018036:-238986 | Msa1363400:CDS |
GATTCTGATGTTATCTTCTG+TGG | 0.488021 | tig0018036:+237696 | None:intergenic |
AGAAGAACACTAAACCTTGC+TGG | 0.489355 | tig0018036:-236937 | Msa1363400:CDS |
ATTTGCTAGCTAGACTCTTA+CGG | 0.490513 | tig0018036:-239429 | Msa1363400:five_prime_UTR |
CAGCTATGCTTATGAAACTT+GGG | 0.490646 | tig0018036:+237530 | None:intergenic |
GCAGATTTGATAGAGATTTG+AGG | 0.492142 | tig0018036:-237813 | Msa1363400:intron |
CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | tig0018036:-237066 | Msa1363400:CDS |
ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | tig0018036:+238500 | None:intergenic |
AAACTATGTGAACGAGGTTA+CGG | 0.508352 | tig0018036:+237473 | None:intergenic |
GGTTAAGCCTTAAAACAAGA+AGG | 0.509933 | tig0018036:-236901 | Msa1363400:CDS |
TCTTAGACAACAATTGAGGT+TGG | 0.527263 | tig0018036:+239098 | None:intergenic |
ACAAATCCCTCAAATCCATT+AGG | 0.528896 | tig0018036:-237658 | Msa1363400:CDS |
GCTATCTTAGACAACAATTG+AGG | 0.540964 | tig0018036:+239094 | None:intergenic |
GAAGATAACATCAGAATCAA+AGG | 0.542170 | tig0018036:-237691 | Msa1363400:CDS |
CCACTCATCACAATACGATC+AGG | 0.544520 | tig0018036:+238552 | None:intergenic |
TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | tig0018036:-239082 | Msa1363400:CDS |
CCACTCACATTTCTGAACTC+TGG | 0.552742 | tig0018036:+238709 | None:intergenic |
TGCCTACTCCTTACTATCCA+GGG | 0.556150 | tig0018036:-238464 | Msa1363400:intron |
TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | tig0018036:+238780 | None:intergenic |
CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | tig0018036:+236833 | None:intergenic |
ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | tig0018036:-237006 | Msa1363400:CDS |
GATTTGATAGAGATTTGAGG+TGG | 0.566695 | tig0018036:-237810 | Msa1363400:CDS |
ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | tig0018036:+238506 | None:intergenic |
AGTTAGAGATTGCAATGTCT+AGG | 0.574321 | tig0018036:+239282 | None:intergenic |
CTCAAATTACTATGCCAGCA+AGG | 0.576441 | tig0018036:+236923 | None:intergenic |
TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | tig0018036:-239088 | Msa1363400:CDS |
TGGAGCAACTGGAGCACATG+AGG | 0.576944 | tig0018036:-238529 | Msa1363400:CDS |
GTTAAGATTAATGTTTCACC+TGG | 0.580822 | tig0018036:-237094 | Msa1363400:CDS |
AATTGTTTACAAAGTAATGG+TGG | 0.584470 | tig0018036:-237205 | Msa1363400:CDS |
TTATACCAACTCTAAAACCA+GGG | 0.584528 | tig0018036:+237425 | None:intergenic |
GTTGTGTTCCTTTAATGTTG+GGG | 0.585562 | tig0018036:-236730 | Msa1363400:three_prime_UTR |
TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | tig0018036:-237451 | Msa1363400:CDS |
GACTGAGGAAATGGAGAATG+AGG | 0.586929 | tig0018036:+236857 | None:intergenic |
GAGGAAGAAGCGAATTTGTG+TGG | 0.587762 | tig0018036:+239226 | None:intergenic |
AAATTCATGTCTAGAACAAG+AGG | 0.590021 | tig0018036:-238594 | Msa1363400:CDS |
ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | tig0018036:+236820 | None:intergenic |
TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | tig0018036:-237452 | Msa1363400:CDS |
TTGTGTTCCTTTAATGTTGG+GGG | 0.595994 | tig0018036:-236729 | Msa1363400:three_prime_UTR |
TTCATTGATGAAATTTACAA+CGG | 0.599733 | tig0018036:+237606 | None:intergenic |
GAAGGTTCACATGAAGGTGA+TGG | 0.606036 | tig0018036:+239401 | None:intergenic |
TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | tig0018036:-237038 | Msa1363400:CDS |
ATTATACCAACTCTAAAACC+AGG | 0.620538 | tig0018036:+237424 | None:intergenic |
AATGTCTAGGAATGAAGTAT+GGG | 0.621148 | tig0018036:+239295 | None:intergenic |
TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | tig0018036:-237279 | Msa1363400:CDS |
TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | tig0018036:-237063 | Msa1363400:CDS |
ACAAACCCATGTGATTTGGT+AGG | 0.627809 | tig0018036:+236689 | None:intergenic |
AGGAAGAAGCGAATTTGTGT+GGG | 0.628251 | tig0018036:+239227 | None:intergenic |
CGATGAAATATACGCTGCAA+CGG | 0.630366 | tig0018036:-237563 | Msa1363400:CDS |
TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | tig0018036:-236972 | Msa1363400:CDS |
GATCGTATTGTGATGAGTGG+TGG | 0.635293 | tig0018036:-238549 | Msa1363400:CDS |
TACCCTGGATAGTAAGGAGT+AGG | 0.653482 | tig0018036:+238462 | None:intergenic |
CCTGATCGTATTGTGATGAG+TGG | 0.663504 | tig0018036:-238552 | Msa1363400:CDS |
GAACAATGAAATGAAACACC+AGG | 0.667249 | tig0018036:+237076 | None:intergenic |
CTATGCTTATGAAACTTGGG+TGG | 0.667408 | tig0018036:+237533 | None:intergenic |
TTCACCATGTCCATCACCAG+TGG | 0.671313 | tig0018036:+239072 | None:intergenic |
GACTGTAAACTATGTGAACG+AGG | 0.673179 | tig0018036:+237467 | None:intergenic |
TCTAGGAATGAAGTATGGGG+TGG | 0.678564 | tig0018036:+239299 | None:intergenic |
TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | tig0018036:-237178 | Msa1363400:CDS |
TTTGCGCGCACAATTTACAA+CGG | 0.684836 | tig0018036:+237384 | None:intergenic |
ATAGCCACTGGTGATGGACA+TGG | 0.685257 | tig0018036:-239076 | Msa1363400:CDS |
CCCATTTGGATAACACCATG+AGG | 0.688522 | tig0018036:+238986 | None:intergenic |
TTTCACCTACCAAATCACAT+GGG | 0.690480 | tig0018036:-236694 | Msa1363400:three_prime_UTR |
GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | tig0018036:+236842 | None:intergenic |
TAACACACTCTAAACCACCC+TGG | 0.698750 | tig0018036:+237049 | None:intergenic |
ATGTCTAGGAATGAAGTATG+GGG | 0.756503 | tig0018036:+239296 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAATATGAATTTTTAC+AGG | - | tig0018036:237344-237363 | Msa1363400:CDS | 10.0% |
!! | TAGACTATAGTAATTAATAA+TGG | - | tig0018036:236832-236851 | Msa1363400:CDS | 15.0% |
!! | AGACTATAGTAATTAATAAT+GGG | - | tig0018036:236833-236852 | Msa1363400:CDS | 15.0% |
!! | AAAAATAAAGATGAAGAAAA+GGG | + | tig0018036:237556-237575 | None:intergenic | 15.0% |
!! | GAATATTAAAGTAATAACTA+AGG | + | tig0018036:237853-237872 | None:intergenic | 15.0% |
!!! | AATGTTTTTGTTTTATTTTC+TGG | + | tig0018036:238050-238069 | None:intergenic | 15.0% |
!! | ATTAATTGTTTACAAAGTAA+TGG | - | tig0018036:238761-238780 | Msa1363400:CDS | 15.0% |
!!! | ATTTGTTGATTTATTAGTTT+GGG | - | tig0018036:239207-239226 | Msa1363400:five_prime_UTR | 15.0% |
!! | TAATAGAATTTGTAATTGTA+AGG | - | tig0018036:239315-239334 | Msa1363400:five_prime_UTR | 15.0% |
!! | TTAGTAGTCCAAATATAAAA+AGG | + | tig0018036:236593-236612 | None:intergenic | 20.0% |
!! | AGTACATAATTTCAAAGAAA+TGG | - | tig0018036:237211-237230 | Msa1363400:CDS | 20.0% |
!! | AAAATAAAGATGAAGAAAAG+GGG | + | tig0018036:237555-237574 | None:intergenic | 20.0% |
!! | GAAAAATAAAGATGAAGAAA+AGG | + | tig0018036:237557-237576 | None:intergenic | 20.0% |
!! | AAAATAAATAATTGCTCTGA+TGG | + | tig0018036:237997-238016 | None:intergenic | 20.0% |
!!! | TTATTTTCTGGTTTGTATAT+AGG | + | tig0018036:238038-238057 | None:intergenic | 20.0% |
!! | TAGAATATTATATGACTATG+TGG | + | tig0018036:238087-238106 | None:intergenic | 20.0% |
!! | TTCATTGATGAAATTTACAA+CGG | + | tig0018036:238366-238385 | None:intergenic | 20.0% |
!! | TAAACAATTAATTCCAACTT+TGG | + | tig0018036:238753-238772 | None:intergenic | 20.0% |
!!! | GATTTGTTGATTTATTAGTT+TGG | - | tig0018036:239206-239225 | Msa1363400:five_prime_UTR | 20.0% |
!! | TAATTGTAAGGTTATTTGTT+TGG | - | tig0018036:239327-239346 | Msa1363400:five_prime_UTR | 20.0% |
!! | TGAACCTTCCTTTTTATATT+TGG | - | tig0018036:236582-236601 | Msa1363400:three_prime_UTR | 25.0% |
! | TAGTCCAAATATAAAAAGGA+AGG | + | tig0018036:236589-236608 | None:intergenic | 25.0% |
! | TAAAAATATACTGCATGGAT+AGG | + | tig0018036:237086-237105 | None:intergenic | 25.0% |
!! | TCAAGTTTAAGATATGATGA+TGG | + | tig0018036:237633-237652 | None:intergenic | 25.0% |
!! | TTTTTCATATGCATCTTCTA+AGG | + | tig0018036:238252-238271 | None:intergenic | 25.0% |
! | AATTGTTTACAAAGTAATGG+TGG | - | tig0018036:238764-238783 | Msa1363400:CDS | 25.0% |
! | ATTTGTGGTTCAGAATAATA+AGG | - | tig0018036:238994-239013 | Msa1363400:CDS | 25.0% |
! | ATGCTAAATAATTCAAGTAG+TGG | + | tig0018036:239152-239171 | None:intergenic | 25.0% |
! | TTCTGTTACTCAAATTTGTA+AGG | - | tig0018036:239372-239391 | Msa1363400:five_prime_UTR | 25.0% |
AATGTCTAGGAATGAAGTAT+GGG | + | tig0018036:236677-236696 | None:intergenic | 30.0% | |
! | AACAACAACAAAAAAGTACG+AGG | + | tig0018036:236765-236784 | None:intergenic | 30.0% |
GAAACATCATCTTACTTTGA+TGG | - | tig0018036:236917-236936 | Msa1363400:CDS | 30.0% | |
!!! | GATTTTTGGTTGGATGAAAA+GGG | + | tig0018036:236964-236983 | None:intergenic | 30.0% |
AGAGCTAAAAATATACTGCA+TGG | + | tig0018036:237091-237110 | None:intergenic | 30.0% | |
!! | CTACTGATTTGGTTCAAAAT+TGG | - | tig0018036:237147-237166 | Msa1363400:CDS | 30.0% |
! | CAAAGAAATGGCTAATTTTC+AGG | - | tig0018036:237223-237242 | Msa1363400:CDS | 30.0% |
!! | GCTAATTTTCAGGATTATCA+TGG | - | tig0018036:237233-237252 | Msa1363400:CDS | 30.0% |
! | ATATGAATTTTTACAGGCTG+TGG | - | tig0018036:237350-237369 | Msa1363400:CDS | 30.0% |
! | AAATTCATGTCTAGAACAAG+AGG | - | tig0018036:237375-237394 | Msa1363400:CDS | 30.0% |
TAATAACTAAGGCTGATTAG+TGG | + | tig0018036:237842-237861 | None:intergenic | 30.0% | |
GAAGATAACATCAGAATCAA+AGG | - | tig0018036:238278-238297 | Msa1363400:intron | 30.0% | |
CGTATATTTCATCGCTTATT+AGG | + | tig0018036:238400-238419 | None:intergenic | 30.0% | |
TTACAGTCTTTCAAAAGACA+TGG | - | tig0018036:238517-238536 | Msa1363400:CDS | 30.0% | |
TACAGTCTTTCAAAAGACAT+GGG | - | tig0018036:238518-238537 | Msa1363400:CDS | 30.0% | |
!! | TTATACCAACTCTAAAACCA+GGG | + | tig0018036:238547-238566 | None:intergenic | 30.0% |
!! | ATTATACCAACTCTAAAACC+AGG | + | tig0018036:238548-238567 | None:intergenic | 30.0% |
! | ATGTACAGAATTTTCACTAG+TGG | - | tig0018036:238722-238741 | Msa1363400:CDS | 30.0% |
AGCTACATTTGAATCAGAAT+TGG | - | tig0018036:238826-238845 | Msa1363400:CDS | 30.0% | |
TTGAATCAGAATTGGAACTT+TGG | - | tig0018036:238834-238853 | Msa1363400:intron | 30.0% | |
GTTAAGATTAATGTTTCACC+TGG | - | tig0018036:238875-238894 | Msa1363400:intron | 30.0% | |
ATGTGCAAATTGCTTTACAA+AGG | - | tig0018036:238963-238982 | Msa1363400:intron | 30.0% | |
ACAAAGGATTAGATCATTTG+TGG | - | tig0018036:238979-238998 | Msa1363400:CDS | 30.0% | |
TCAGAATAATAAGGAGGTTA+TGG | - | tig0018036:239003-239022 | Msa1363400:CDS | 30.0% | |
!!! | CATCAAACCTTCTTGTTTTA+AGG | + | tig0018036:239078-239097 | None:intergenic | 30.0% |
ATGTTGTGTTCCTTTAATGT+TGG | - | tig0018036:239237-239256 | Msa1363400:five_prime_UTR | 30.0% | |
TGTTGTGTTCCTTTAATGTT+GGG | - | tig0018036:239238-239257 | Msa1363400:five_prime_UTR | 30.0% | |
! | AACAGAACACAGATATTTTC+TGG | + | tig0018036:239359-239378 | None:intergenic | 30.0% |
! | ATTTGCTAGCTAGACTCTTA+CGG | - | tig0018036:236540-236559 | Msa1363400:three_prime_UTR | 35.0% |
AAAAAGGAAGGTTCACATGA+AGG | + | tig0018036:236577-236596 | None:intergenic | 35.0% | |
ATGTCTAGGAATGAAGTATG+GGG | + | tig0018036:236676-236695 | None:intergenic | 35.0% | |
CAATGTCTAGGAATGAAGTA+TGG | + | tig0018036:236678-236697 | None:intergenic | 35.0% | |
AGTTAGAGATTGCAATGTCT+AGG | + | tig0018036:236690-236709 | None:intergenic | 35.0% | |
TCTTAGACAACAATTGAGGT+TGG | + | tig0018036:236874-236893 | None:intergenic | 35.0% | |
GCTATCTTAGACAACAATTG+AGG | + | tig0018036:236878-236897 | None:intergenic | 35.0% | |
CATCATCTTACTTTGATGGA+TGG | - | tig0018036:236921-236940 | Msa1363400:CDS | 35.0% | |
!!! | GGATTTTTGGTTGGATGAAA+AGG | + | tig0018036:236965-236984 | None:intergenic | 35.0% |
! | GATAACACCATGAGGATTTT+TGG | + | tig0018036:236978-236997 | None:intergenic | 35.0% |
CAGGTATATATCAAGCTTTG+AGG | - | tig0018036:237019-237038 | Msa1363400:CDS | 35.0% | |
! | TTTCCAGCTTACTACTGATT+TGG | - | tig0018036:237136-237155 | Msa1363400:CDS | 35.0% |
!! | TCCTTCTAGAGTACAAATTG+AGG | + | tig0018036:237192-237211 | None:intergenic | 35.0% |
TGAATTGAATGTACATACCC+TGG | + | tig0018036:237525-237544 | None:intergenic | 35.0% | |
TTTATAGTGCAATCAGCTAC+AGG | - | tig0018036:237669-237688 | Msa1363400:CDS | 35.0% | |
TCACTGCACTGTAAAGTAAA+CGG | - | tig0018036:237748-237767 | Msa1363400:CDS | 35.0% | |
!! | CAGTAAAACATTTTCAAGCG+CGG | - | tig0018036:237771-237790 | Msa1363400:CDS | 35.0% |
!!! | TGGAACTGACTTTTTCAACA+AGG | - | tig0018036:237908-237927 | Msa1363400:intron | 35.0% |
!!! | GGAACTGACTTTTTCAACAA+GGG | - | tig0018036:237909-237928 | Msa1363400:intron | 35.0% |
GCAGATTTGATAGAGATTTG+AGG | - | tig0018036:238156-238175 | Msa1363400:intron | 35.0% | |
GATTTGATAGAGATTTGAGG+TGG | - | tig0018036:238159-238178 | Msa1363400:intron | 35.0% | |
GATTCTGATGTTATCTTCTG+TGG | + | tig0018036:238276-238295 | None:intergenic | 35.0% | |
ACAAATCCCTCAAATCCATT+AGG | - | tig0018036:238311-238330 | Msa1363400:intron | 35.0% | |
AAATCCATTAGGCACAGTTA+TGG | - | tig0018036:238322-238341 | Msa1363400:intron | 35.0% | |
CAGCTATGCTTATGAAACTT+GGG | + | tig0018036:238442-238461 | None:intergenic | 35.0% | |
TCAGCTATGCTTATGAAACT+TGG | + | tig0018036:238443-238462 | None:intergenic | 35.0% | |
AAACTATGTGAACGAGGTTA+CGG | + | tig0018036:238499-238518 | None:intergenic | 35.0% | |
AACACAGACACAATACTTGA+TGG | - | tig0018036:238631-238650 | Msa1363400:intron | 35.0% | |
!! | ACTAGTGGATTAACCAAAGT+TGG | - | tig0018036:238737-238756 | Msa1363400:CDS | 35.0% |
GAACAATGAAATGAAACACC+AGG | + | tig0018036:238896-238915 | None:intergenic | 35.0% | |
TAGAGTGTGTTATGCTAACA+TGG | - | tig0018036:238931-238950 | Msa1363400:intron | 35.0% | |
TGTGGTTCAGAATAATAAGG+AGG | - | tig0018036:238997-239016 | Msa1363400:CDS | 35.0% | |
GGTTAAGCCTTAAAACAAGA+AGG | - | tig0018036:239068-239087 | Msa1363400:CDS | 35.0% | |
GTTGTGTTCCTTTAATGTTG+GGG | - | tig0018036:239239-239258 | Msa1363400:five_prime_UTR | 35.0% | |
TTGTGTTCCTTTAATGTTGG+GGG | - | tig0018036:239240-239259 | Msa1363400:five_prime_UTR | 35.0% | |
AAAAATGCCCCCAACATTAA+AGG | + | tig0018036:239250-239269 | None:intergenic | 35.0% | |
! | TTTTCACCTACCAAATCACA+TGG | - | tig0018036:239274-239293 | Msa1363400:five_prime_UTR | 35.0% |
TTTCACCTACCAAATCACAT+GGG | - | tig0018036:239275-239294 | Msa1363400:five_prime_UTR | 35.0% | |
AGGAAGAAGCGAATTTGTGT+GGG | + | tig0018036:236745-236764 | None:intergenic | 40.0% | |
! | TTGTTGTCTAAGATAGCCAC+TGG | - | tig0018036:236881-236900 | Msa1363400:CDS | 40.0% |
CATCCAACCAAAAATCCTCA+TGG | - | tig0018036:236968-236987 | Msa1363400:CDS | 40.0% | |
!!! | ACACCATGAGGATTTTTGGT+TGG | + | tig0018036:236974-236993 | None:intergenic | 40.0% |
!! | TCCTCATGGTGTTATCCAAA+TGG | - | tig0018036:236982-237001 | Msa1363400:CDS | 40.0% |
!! | CCTCATGGTGTTATCCAAAT+GGG | - | tig0018036:236983-237002 | Msa1363400:CDS | 40.0% |
GAACCAAATCAGTAGTAAGC+TGG | + | tig0018036:237142-237161 | None:intergenic | 40.0% | |
GAGTACAAATTGAGGCTTCT+GGG | + | tig0018036:237184-237203 | None:intergenic | 40.0% | |
AGAGTACAAATTGAGGCTTC+TGG | + | tig0018036:237185-237204 | None:intergenic | 40.0% | |
GCCTCAATTTGTACTCTAGA+AGG | - | tig0018036:237188-237207 | Msa1363400:CDS | 40.0% | |
!!! | AGATCCTGGTGATGCTTTTT+TGG | - | tig0018036:237482-237501 | Msa1363400:CDS | 40.0% |
TGTACATACCCTGGATAGTA+AGG | + | tig0018036:237516-237535 | None:intergenic | 40.0% | |
TCCATCAAAATTCACTACCC+TGG | + | tig0018036:237892-237911 | None:intergenic | 40.0% | |
TTTGCACTTTCGCAGATAAC+TGG | + | tig0018036:238206-238225 | None:intergenic | 40.0% | |
!! | ACTGTGCCTAATGGATTTGA+GGG | + | tig0018036:238320-238339 | None:intergenic | 40.0% |
!! | AACTGTGCCTAATGGATTTG+AGG | + | tig0018036:238321-238340 | None:intergenic | 40.0% |
CAACGGTTCTTAATGTGCTT+CGG | + | tig0018036:238349-238368 | None:intergenic | 40.0% | |
CGATGAAATATACGCTGCAA+CGG | - | tig0018036:238406-238425 | Msa1363400:intron | 40.0% | |
CTATGCTTATGAAACTTGGG+TGG | + | tig0018036:238439-238458 | None:intergenic | 40.0% | |
GACTGTAAACTATGTGAACG+AGG | + | tig0018036:238505-238524 | None:intergenic | 40.0% | |
TTTGCGCGCACAATTTACAA+CGG | + | tig0018036:238588-238607 | None:intergenic | 40.0% | |
! | TTCTTGCTGAAAGTGCAAAG+AGG | - | tig0018036:238690-238709 | Msa1363400:intron | 40.0% |
!!! | GTAATGGTGGACTTTTTGTG+TGG | - | tig0018036:238777-238796 | Msa1363400:CDS | 40.0% |
! | TTTGTGTGGATGGATTTGAG+AGG | - | tig0018036:238791-238810 | Msa1363400:CDS | 40.0% |
GGATTTGAGAGGACTTCTTA+AGG | - | tig0018036:238802-238821 | Msa1363400:CDS | 40.0% | |
! | TCATTTCATTGTTCTGAGCC+AGG | - | tig0018036:238902-238921 | Msa1363400:intron | 40.0% |
! | CATTTCATTGTTCTGAGCCA+GGG | - | tig0018036:238903-238922 | Msa1363400:intron | 40.0% |
AGAAGAACACTAAACCTTGC+TGG | - | tig0018036:239032-239051 | Msa1363400:CDS | 40.0% | |
CTCAAATTACTATGCCAGCA+AGG | + | tig0018036:239049-239068 | None:intergenic | 40.0% | |
CTTGCTGGCATAGTAATTTG+AGG | - | tig0018036:239047-239066 | Msa1363400:CDS | 40.0% | |
!! | CAAGTAGTGGCTTTAACAAG+AGG | + | tig0018036:239139-239158 | None:intergenic | 40.0% |
!! | ACAAACCCATGTGATTTGGT+AGG | + | tig0018036:239283-239302 | None:intergenic | 40.0% |
TACCAAATCACATGGGTTTG+TGG | - | tig0018036:239282-239301 | Msa1363400:five_prime_UTR | 40.0% | |
GAAGGTTCACATGAAGGTGA+TGG | + | tig0018036:236571-236590 | None:intergenic | 45.0% | |
TCTAGGAATGAAGTATGGGG+TGG | + | tig0018036:236673-236692 | None:intergenic | 45.0% | |
GAGGAAGAAGCGAATTTGTG+TGG | + | tig0018036:236746-236765 | None:intergenic | 45.0% | |
! | TCTAAGATAGCCACTGGTGA+TGG | - | tig0018036:236887-236906 | Msa1363400:CDS | 45.0% |
CCCATTTGGATAACACCATG+AGG | + | tig0018036:236986-237005 | None:intergenic | 45.0% | |
GATTCTCTGCAAGACCCATT+TGG | + | tig0018036:237000-237019 | None:intergenic | 45.0% | |
AATGGGTCTTGCAGAGAATC+AGG | - | tig0018036:237000-237019 | Msa1363400:CDS | 45.0% | |
CCACTCACATTTCTGAACTC+TGG | + | tig0018036:237263-237282 | None:intergenic | 45.0% | |
CCAGAGTTCAGAAATGTGAG+TGG | - | tig0018036:237260-237279 | Msa1363400:CDS | 45.0% | |
CCACTCATCACAATACGATC+AGG | + | tig0018036:237420-237439 | None:intergenic | 45.0% | |
CCTGATCGTATTGTGATGAG+TGG | - | tig0018036:237417-237436 | Msa1363400:CDS | 45.0% | |
GATCGTATTGTGATGAGTGG+TGG | - | tig0018036:237420-237439 | Msa1363400:CDS | 45.0% | |
ATCTGCCAAACAAAAGGCAG+TGG | + | tig0018036:237466-237485 | None:intergenic | 45.0% | |
ACCAGGATCTGCCAAACAAA+AGG | + | tig0018036:237472-237491 | None:intergenic | 45.0% | |
TGCCTACTCCTTACTATCCA+GGG | - | tig0018036:237505-237524 | Msa1363400:CDS | 45.0% | |
TACCCTGGATAGTAAGGAGT+AGG | + | tig0018036:237510-237529 | None:intergenic | 45.0% | |
TCCAGTCATCATTAGAAGCC+AGG | - | tig0018036:237871-237890 | Msa1363400:intron | 45.0% | |
CCAGTCATCATTAGAAGCCA+GGG | - | tig0018036:237872-237891 | Msa1363400:intron | 45.0% | |
! | GCCAGGGTAGTGAATTTTGA+TGG | - | tig0018036:237888-237907 | Msa1363400:intron | 45.0% |
! | AGAGATTTGAGGTGGAGAAC+AGG | - | tig0018036:238167-238186 | Msa1363400:intron | 45.0% |
TCAAAAGACATGGGATTCCC+TGG | - | tig0018036:238527-238546 | Msa1363400:CDS | 45.0% | |
!!! | GGATTCCCTGGTTTTAGAGT+TGG | - | tig0018036:238539-238558 | Msa1363400:CDS | 45.0% |
!!! | TGGTGGACTTTTTGTGTGGA+TGG | - | tig0018036:238781-238800 | Msa1363400:CDS | 45.0% |
TAACACACTCTAAACCACCC+TGG | + | tig0018036:238923-238942 | None:intergenic | 45.0% | |
GACTGAGGAAATGGAGAATG+AGG | + | tig0018036:239115-239134 | None:intergenic | 45.0% | |
ACAAGAGGTGACTGAGGAAA+TGG | + | tig0018036:239124-239143 | None:intergenic | 45.0% | |
GCTTTAACAAGAGGTGACTG+AGG | + | tig0018036:239130-239149 | None:intergenic | 45.0% | |
CACCACAAACCCATGTGATT+TGG | + | tig0018036:239287-239306 | None:intergenic | 45.0% | |
!!! | TAATTGATAATATTTATAAT+TGG | + | tig0018036:237579-237598 | None:intergenic | 5.0% |
!! | ATAGCCACTGGTGATGGACA+TGG | - | tig0018036:236893-236912 | Msa1363400:CDS | 50.0% |
TTCACCATGTCCATCACCAG+TGG | + | tig0018036:236900-236919 | None:intergenic | 50.0% | |
! | TGAGGCCACTGCCTTTTGTT+TGG | - | tig0018036:237458-237477 | Msa1363400:CDS | 50.0% |
!! | GCCTTTTGTTTGGCAGATCC+TGG | - | tig0018036:237468-237487 | Msa1363400:CDS | 50.0% |
!! | GGCACCAAAAAAGCATCACC+AGG | + | tig0018036:237489-237508 | None:intergenic | 50.0% |
GTGCCTACTCCTTACTATCC+AGG | - | tig0018036:237504-237523 | Msa1363400:CDS | 50.0% | |
CAGTGCAGTGAGTTGCAAGT+CGG | + | tig0018036:237739-237758 | None:intergenic | 50.0% | |
CCCTGGCTTCTAATGATGAC+TGG | + | tig0018036:237875-237894 | None:intergenic | 50.0% | |
CGGTCCATAACTGTGCCTAA+TGG | + | tig0018036:238329-238348 | None:intergenic | 50.0% | |
! | GCGCGCAAAATGTCGAGTTT+TGG | - | tig0018036:238599-238618 | Msa1363400:CDS | 50.0% |
! | TTCATTGTTCTGAGCCAGGG+TGG | - | tig0018036:238906-238925 | Msa1363400:intron | 50.0% |
! | GTGATGAGTGGTGGAGCAAC+TGG | - | tig0018036:237429-237448 | Msa1363400:CDS | 55.0% |
TGGAGCAACTGGAGCACATG+AGG | - | tig0018036:237440-237459 | Msa1363400:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0018036 | gene | 236529 | 239462 | 236529 | ID=Msa1363400;Name=Msa1363400 |
tig0018036 | mRNA | 236529 | 239462 | 236529 | ID=Msa1363400-mRNA-1;Parent=Msa1363400;Name=Msa1363400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=322|1|1|1|1|1|4|303|487 |
tig0018036 | exon | 236529 | 237831 | 236529 | ID=Msa1363400-mRNA-1:exon:13533;Parent=Msa1363400-mRNA-1 |
tig0018036 | exon | 238465 | 238625 | 238465 | ID=Msa1363400-mRNA-1:exon:13532;Parent=Msa1363400-mRNA-1 |
tig0018036 | exon | 238717 | 238848 | 238717 | ID=Msa1363400-mRNA-1:exon:13531;Parent=Msa1363400-mRNA-1 |
tig0018036 | exon | 238970 | 239462 | 238970 | ID=Msa1363400-mRNA-1:exon:13530;Parent=Msa1363400-mRNA-1 |
tig0018036 | five_prime_UTR | 239141 | 239462 | 239141 | ID=Msa1363400-mRNA-1:five_prime_utr;Parent=Msa1363400-mRNA-1 |
tig0018036 | CDS | 238970 | 239140 | 238970 | ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1 |
tig0018036 | CDS | 238717 | 238848 | 238717 | ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1 |
tig0018036 | CDS | 238465 | 238625 | 238465 | ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1 |
tig0018036 | CDS | 236832 | 237831 | 236832 | ID=Msa1363400-mRNA-1:cds;Parent=Msa1363400-mRNA-1 |
tig0018036 | three_prime_UTR | 236529 | 236831 | 236529 | ID=Msa1363400-mRNA-1:three_prime_utr;Parent=Msa1363400-mRNA-1 |
Gene Sequence |
Protein sequence |