AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386670 MtrunA17_Chr8g0387481 97.947 487 10 0 1 487 1 487 0.0 1005
Msa1386670 MtrunA17_Chr7g0248681 65.784 491 156 4 1 486 1 484 0.0 677
Msa1386670 MtrunA17_Chr8g0348351 64.583 480 159 3 10 486 9 480 0.0 669
Msa1386670 MtrunA17_Chr4g0054371 55.011 449 194 3 10 450 2 450 0.0 544
Msa1386670 MtrunA17_Chr3g0135251 53.571 448 199 4 11 451 1 446 0.0 528
Msa1386670 MtrunA17_Chr5g0400831 54.503 433 191 4 10 436 2 434 0.0 527
Msa1386670 MtrunA17_Chr8g0389311 56.000 425 178 2 12 436 12 427 0.0 516
Msa1386670 MtrunA17_Chr8g0389321 56.000 425 178 2 12 436 12 427 0.0 516
Msa1386670 MtrunA17_Chr6g0488041 55.079 443 192 5 1 441 1 438 0.0 516
Msa1386670 MtrunA17_Chr6g0475681 42.353 425 241 2 12 435 104 525 5.73e-136 402
Msa1386670 MtrunA17_Chr5g0398431 40.541 407 239 1 25 431 85 488 5.42e-120 360
Msa1386670 MtrunA17_Chr8g0345201 23.077 351 243 12 94 422 158 503 4.39e-17 84.0
Msa1386670 MtrunA17_Chr5g0412871 24.257 404 265 17 39 408 42 438 4.17e-16 80.9
Msa1386670 MtrunA17_Chr7g0267911 22.346 358 235 15 95 436 135 465 1.07e-15 79.3
Msa1386670 MtrunA17_Chr4g0004131 22.599 354 234 14 87 432 61 382 6.77e-15 76.3
Msa1386670 MtrunA17_Chr2g0324801 23.529 374 228 16 89 438 42 381 1.01e-13 72.8
Msa1386670 MtrunA17_Chr3g0114811 23.559 399 241 16 46 422 86 442 1.97e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386670 AT4G11280.1 66.191 491 143 4 11 487 14 495 0.0 661
Msa1386670 AT3G61510.1 62.062 485 170 3 10 485 9 488 0.0 645
Msa1386670 AT1G01480.1 60.241 498 183 6 1 485 1 496 0.0 643
Msa1386670 AT4G37770.1 58.275 429 172 3 11 435 3 428 0.0 550
Msa1386670 AT2G22810.1 55.349 430 190 2 12 439 4 433 0.0 518
Msa1386670 AT5G65800.1 54.128 436 197 2 12 445 4 438 2.39e-180 514
Msa1386670 AT3G49700.1 54.005 437 198 2 12 446 4 439 3.07e-180 513
Msa1386670 AT4G08040.1 53.613 429 197 2 11 439 1 427 8.49e-180 512
Msa1386670 AT4G26200.1 56.000 425 185 2 12 435 18 441 5.27e-179 509
Msa1386670 AT1G01480.2 58.163 392 149 6 107 485 1 390 5.90e-168 479
Msa1386670 AT5G51690.1 42.822 411 231 2 25 434 82 489 1.23e-125 375
Msa1386670 AT1G62960.1 42.615 413 227 6 22 432 143 547 1.07e-124 375
Msa1386670 AT5G51690.2 44.068 354 195 1 79 432 14 364 3.99e-114 341
Msa1386670 AT2G22250.1 24.533 375 229 16 80 432 74 416 7.83e-20 92.0
Msa1386670 AT2G22250.3 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa1386670 AT2G22250.2 24.533 375 229 16 80 432 121 463 1.17e-19 92.0
Msa1386670 AT1G23310.2 25.000 348 226 15 87 408 100 438 3.94e-18 87.0
Msa1386670 AT1G23310.1 25.000 348 226 15 87 408 100 438 4.25e-18 87.4
Msa1386670 AT1G70580.4 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1386670 AT1G70580.2 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1386670 AT1G70580.3 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1386670 AT1G70580.1 25.904 332 215 14 39 343 42 369 7.57e-18 86.7
Msa1386670 AT1G17290.1 25.952 289 196 10 94 368 177 461 1.42e-17 85.9
Msa1386670 AT1G72330.1 23.562 365 247 13 94 434 174 530 1.32e-16 82.8
Msa1386670 AT5G36160.1 22.826 368 239 14 89 440 79 417 3.30e-15 78.2
Msa1386670 AT1G72330.3 22.513 382 251 13 90 434 170 543 6.65e-15 77.8
Msa1386670 AT1G72330.2 26.860 242 162 8 90 323 170 404 1.64e-14 75.9
Msa1386670 AT1G77670.1 22.980 396 255 15 59 432 66 433 1.17e-11 67.0

Find 116 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGATTTGGTTCAAAAT+TGG 0.180902 tig0020834:-101673 Msa1386670:CDS
CGTATATTTCATCGCTTATT+AGG 0.237518 tig0020834:+100423 None:intergenic
TAGACTATAGTAATTAATAA+TGG 0.275952 tig0020834:-101988 Msa1386670:exon
AGAGTACAAATTGAGGCTTC+TGG 0.284872 tig0020834:+101638 None:intergenic
GATTTGTTGATTTATTAGTT+TGG 0.286489 tig0020834:-99614 Msa1386670:three_prime_UTR
TTTGCACTTTCGCAGATAAC+TGG 0.298899 tig0020834:+100617 None:intergenic
AGAGATTTGAGGTGGAGAAC+AGG 0.302380 tig0020834:-100653 Msa1386670:CDS
CAATGTCTAGGAATGAAGTA+TGG 0.312104 tig0020834:+102145 None:intergenic
ATTTGTTGATTTATTAGTTT+GGG 0.312718 tig0020834:-99613 Msa1386670:three_prime_UTR
TTAGTAGTCCAAATATAAAA+AGG 0.318247 tig0020834:+102230 None:intergenic
TTTCCAGCTTACTACTGATT+TGG 0.334888 tig0020834:-101684 Msa1386670:intron
GCGCGCAAAATGTCGAGTTT+TGG 0.341792 tig0020834:-100221 Msa1386670:CDS
CACCACAAACCCATGTGATT+TGG 0.343608 tig0020834:+99536 None:intergenic
AGCTACATTTGAATCAGAAT+TGG 0.358107 tig0020834:-99994 Msa1386670:CDS
AGACTATAGTAATTAATAAT+GGG 0.359076 tig0020834:-101987 Msa1386670:exon
ATTTGTGGTTCAGAATAATA+AGG 0.368943 tig0020834:-99826 Msa1386670:CDS
TAATAGAATTTGTAATTGTA+AGG 0.374758 tig0020834:-99505 Msa1386670:three_prime_UTR
TCCTCATGGTGTTATCCAAA+TGG 0.374967 tig0020834:-101838 Msa1386670:CDS
AGTACATAATTTCAAAGAAA+TGG 0.381772 tig0020834:-101609 Msa1386670:CDS
TCAGAATAATAAGGAGGTTA+TGG 0.384538 tig0020834:-99817 Msa1386670:CDS
TTCTGTTACTCAAATTTGTA+AGG 0.384841 tig0020834:-99448 Msa1386670:three_prime_UTR
AACACAGACACAATACTTGA+TGG 0.385707 tig0020834:-100189 Msa1386670:CDS
GCCTCAATTTGTACTCTAGA+AGG 0.386175 tig0020834:-101632 Msa1386670:CDS
ACAAGAGGTGACTGAGGAAA+TGG 0.387130 tig0020834:+99699 None:intergenic
TGTTGTGTTCCTTTAATGTT+GGG 0.388781 tig0020834:-99582 Msa1386670:three_prime_UTR
TCAGCTATGCTTATGAAACT+TGG 0.389874 tig0020834:+100380 None:intergenic
TAAACAATTAATTCCAACTT+TGG 0.390119 tig0020834:+100070 None:intergenic
TCATTTCATTGTTCTGAGCC+AGG 0.391963 tig0020834:-99918 Msa1386670:CDS
ACTAGTGGATTAACCAAAGT+TGG 0.392203 tig0020834:-100083 Msa1386670:CDS
GAGTACAAATTGAGGCTTCT+GGG 0.396801 tig0020834:+101639 None:intergenic
GAAACATCATCTTACTTTGA+TGG 0.397210 tig0020834:-101903 Msa1386670:CDS
AATGGGTCTTGCAGAGAATC+AGG 0.399230 tig0020834:-101820 Msa1386670:intron
GATTCTCTGCAAGACCCATT+TGG 0.400674 tig0020834:+101823 None:intergenic
GTGCCTACTCCTTACTATCC+AGG 0.402112 tig0020834:-101316 Msa1386670:CDS
GGATTTGAGAGGACTTCTTA+AGG 0.406992 tig0020834:-100018 Msa1386670:CDS
TAATTGTAAGGTTATTTGTT+TGG 0.410239 tig0020834:-99493 Msa1386670:three_prime_UTR
TTGAATCAGAATTGGAACTT+TGG 0.414840 tig0020834:-99986 Msa1386670:CDS
CGGTCCATAACTGTGCCTAA+TGG 0.421374 tig0020834:+100494 None:intergenic
CAACGGTTCTTAATGTGCTT+CGG 0.426255 tig0020834:+100474 None:intergenic
ATGTTGTGTTCCTTTAATGT+TGG 0.439273 tig0020834:-99583 Msa1386670:three_prime_UTR
AACTGTGCCTAATGGATTTG+AGG 0.440159 tig0020834:+100502 None:intergenic
GTGATGAGTGGTGGAGCAAC+TGG 0.440195 tig0020834:-101391 Msa1386670:CDS
CTTGCTGGCATAGTAATTTG+AGG 0.441796 tig0020834:-99773 Msa1386670:CDS
ACAAAGGATTAGATCATTTG+TGG 0.445312 tig0020834:-99841 Msa1386670:CDS
ATTAATTGTTTACAAAGTAA+TGG 0.455659 tig0020834:-100059 Msa1386670:CDS
TGTACATACCCTGGATAGTA+AGG 0.457320 tig0020834:+101307 None:intergenic
TACCAAATCACATGGGTTTG+TGG 0.464212 tig0020834:-99538 Msa1386670:three_prime_UTR
AAATCCATTAGGCACAGTTA+TGG 0.479153 tig0020834:-100498 Msa1386670:CDS
TCAAAAGACATGGGATTCCC+TGG 0.480186 tig0020834:-100293 Msa1386670:CDS
ACTGTGCCTAATGGATTTGA+GGG 0.481893 tig0020834:+100503 None:intergenic
CATCATCTTACTTTGATGGA+TGG 0.487153 tig0020834:-101899 Msa1386670:CDS
CCTCATGGTGTTATCCAAAT+GGG 0.487603 tig0020834:-101837 Msa1386670:CDS
GATTCTGATGTTATCTTCTG+TGG 0.488021 tig0020834:+100547 None:intergenic
AGAAGAACACTAAACCTTGC+TGG 0.489355 tig0020834:-99788 Msa1386670:CDS
ATTTGCTAGCTAGACTCTTA+CGG 0.490513 tig0020834:-102280 Msa1386670:five_prime_UTR
CAGCTATGCTTATGAAACTT+GGG 0.490646 tig0020834:+100381 None:intergenic
GCAGATTTGATAGAGATTTG+AGG 0.492142 tig0020834:-100664 Msa1386670:intron
CATTTCATTGTTCTGAGCCA+GGG 0.492750 tig0020834:-99917 Msa1386670:CDS
ACCAGGATCTGCCAAACAAA+AGG 0.493747 tig0020834:+101351 None:intergenic
AAACTATGTGAACGAGGTTA+CGG 0.508352 tig0020834:+100324 None:intergenic
GGTTAAGCCTTAAAACAAGA+AGG 0.509933 tig0020834:-99752 Msa1386670:CDS
TCTTAGACAACAATTGAGGT+TGG 0.527263 tig0020834:+101949 None:intergenic
ACAAATCCCTCAAATCCATT+AGG 0.528896 tig0020834:-100509 Msa1386670:CDS
GCTATCTTAGACAACAATTG+AGG 0.540964 tig0020834:+101945 None:intergenic
GAAGATAACATCAGAATCAA+AGG 0.542170 tig0020834:-100542 Msa1386670:CDS
CCACTCATCACAATACGATC+AGG 0.544520 tig0020834:+101403 None:intergenic
TCTAAGATAGCCACTGGTGA+TGG 0.550202 tig0020834:-101933 Msa1386670:CDS
CCACTCACATTTCTGAACTC+TGG 0.552742 tig0020834:+101560 None:intergenic
TGCCTACTCCTTACTATCCA+GGG 0.556150 tig0020834:-101315 Msa1386670:intron
TCCTTCTAGAGTACAAATTG+AGG 0.558961 tig0020834:+101631 None:intergenic
CAAGTAGTGGCTTTAACAAG+AGG 0.562133 tig0020834:+99684 None:intergenic
ATGTGCAAATTGCTTTACAA+AGG 0.563606 tig0020834:-99857 Msa1386670:CDS
GATTTGATAGAGATTTGAGG+TGG 0.566695 tig0020834:-100661 Msa1386670:CDS
ATCTGCCAAACAAAAGGCAG+TGG 0.571931 tig0020834:+101357 None:intergenic
AGTTAGAGATTGCAATGTCT+AGG 0.574321 tig0020834:+102133 None:intergenic
CTCAAATTACTATGCCAGCA+AGG 0.576441 tig0020834:+99774 None:intergenic
TTGTTGTCTAAGATAGCCAC+TGG 0.576629 tig0020834:-101939 Msa1386670:CDS
TGGAGCAACTGGAGCACATG+AGG 0.576944 tig0020834:-101380 Msa1386670:CDS
GTTAAGATTAATGTTTCACC+TGG 0.580822 tig0020834:-99945 Msa1386670:CDS
AATTGTTTACAAAGTAATGG+TGG 0.584470 tig0020834:-100056 Msa1386670:CDS
TTATACCAACTCTAAAACCA+GGG 0.584528 tig0020834:+100276 None:intergenic
GTTGTGTTCCTTTAATGTTG+GGG 0.585562 tig0020834:-99581 Msa1386670:three_prime_UTR
TACAGTCTTTCAAAAGACAT+GGG 0.586545 tig0020834:-100302 Msa1386670:CDS
GACTGAGGAAATGGAGAATG+AGG 0.586929 tig0020834:+99708 None:intergenic
GAGGAAGAAGCGAATTTGTG+TGG 0.587762 tig0020834:+102077 None:intergenic
AAATTCATGTCTAGAACAAG+AGG 0.590021 tig0020834:-101445 Msa1386670:CDS
ATGCTAAATAATTCAAGTAG+TGG 0.595412 tig0020834:+99671 None:intergenic
TTACAGTCTTTCAAAAGACA+TGG 0.595760 tig0020834:-100303 Msa1386670:CDS
TTGTGTTCCTTTAATGTTGG+GGG 0.595994 tig0020834:-99580 Msa1386670:three_prime_UTR
TTCATTGATGAAATTTACAA+CGG 0.599733 tig0020834:+100457 None:intergenic
GAAGGTTCACATGAAGGTGA+TGG 0.606036 tig0020834:+102252 None:intergenic
TAGAGTGTGTTATGCTAACA+TGG 0.616578 tig0020834:-99889 Msa1386670:CDS
ATTATACCAACTCTAAAACC+AGG 0.620538 tig0020834:+100275 None:intergenic
AATGTCTAGGAATGAAGTAT+GGG 0.621148 tig0020834:+102146 None:intergenic
TTCTTGCTGAAAGTGCAAAG+AGG 0.621704 tig0020834:-100130 Msa1386670:CDS
TTCATTGTTCTGAGCCAGGG+TGG 0.625682 tig0020834:-99914 Msa1386670:CDS
ACAAACCCATGTGATTTGGT+AGG 0.627809 tig0020834:+99540 None:intergenic
AGGAAGAAGCGAATTTGTGT+GGG 0.628251 tig0020834:+102078 None:intergenic
CGATGAAATATACGCTGCAA+CGG 0.630366 tig0020834:-100414 Msa1386670:CDS
TGTGGTTCAGAATAATAAGG+AGG 0.634977 tig0020834:-99823 Msa1386670:CDS
GATCGTATTGTGATGAGTGG+TGG 0.635293 tig0020834:-101400 Msa1386670:CDS
TACCCTGGATAGTAAGGAGT+AGG 0.653482 tig0020834:+101313 None:intergenic
CCTGATCGTATTGTGATGAG+TGG 0.663504 tig0020834:-101403 Msa1386670:CDS
GAACAATGAAATGAAACACC+AGG 0.667249 tig0020834:+99927 None:intergenic
CTATGCTTATGAAACTTGGG+TGG 0.667408 tig0020834:+100384 None:intergenic
TTCACCATGTCCATCACCAG+TGG 0.671313 tig0020834:+101923 None:intergenic
GACTGTAAACTATGTGAACG+AGG 0.673179 tig0020834:+100318 None:intergenic
TCTAGGAATGAAGTATGGGG+TGG 0.678564 tig0020834:+102150 None:intergenic
TTTGTGTGGATGGATTTGAG+AGG 0.680530 tig0020834:-100029 Msa1386670:CDS
TTTGCGCGCACAATTTACAA+CGG 0.684836 tig0020834:+100235 None:intergenic
ATAGCCACTGGTGATGGACA+TGG 0.685257 tig0020834:-101927 Msa1386670:CDS
CCCATTTGGATAACACCATG+AGG 0.688522 tig0020834:+101837 None:intergenic
TTTCACCTACCAAATCACAT+GGG 0.690480 tig0020834:-99545 Msa1386670:three_prime_UTR
GCTTTAACAAGAGGTGACTG+AGG 0.694413 tig0020834:+99693 None:intergenic
TAACACACTCTAAACCACCC+TGG 0.698750 tig0020834:+99900 None:intergenic
ATGTCTAGGAATGAAGTATG+GGG 0.756503 tig0020834:+102147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATATGAATTTTTAC+AGG - tig0020834:100195-100214 Msa1386670:CDS 10.0%
!! TAGACTATAGTAATTAATAA+TGG - tig0020834:99683-99702 Msa1386670:CDS 15.0%
!! AGACTATAGTAATTAATAAT+GGG - tig0020834:99684-99703 Msa1386670:CDS 15.0%
!! AAAAATAAAGATGAAGAAAA+GGG + tig0020834:100407-100426 None:intergenic 15.0%
!! GAATATTAAAGTAATAACTA+AGG + tig0020834:100704-100723 None:intergenic 15.0%
!!! AATGTTTTTGTTTTATTTTC+TGG + tig0020834:100901-100920 None:intergenic 15.0%
!! ATTAATTGTTTACAAAGTAA+TGG - tig0020834:101612-101631 Msa1386670:CDS 15.0%
!!! ATTTGTTGATTTATTAGTTT+GGG - tig0020834:102058-102077 Msa1386670:five_prime_UTR 15.0%
!! TAATAGAATTTGTAATTGTA+AGG - tig0020834:102166-102185 Msa1386670:five_prime_UTR 15.0%
!! TTAGTAGTCCAAATATAAAA+AGG + tig0020834:99444-99463 None:intergenic 20.0%
!! AGTACATAATTTCAAAGAAA+TGG - tig0020834:100062-100081 Msa1386670:CDS 20.0%
!! AAAATAAAGATGAAGAAAAG+GGG + tig0020834:100406-100425 None:intergenic 20.0%
!! GAAAAATAAAGATGAAGAAA+AGG + tig0020834:100408-100427 None:intergenic 20.0%
!! AAAATAAATAATTGCTCTGA+TGG + tig0020834:100848-100867 None:intergenic 20.0%
!!! TTATTTTCTGGTTTGTATAT+AGG + tig0020834:100889-100908 None:intergenic 20.0%
!! TAGAATATTATATGACTATG+TGG + tig0020834:100938-100957 None:intergenic 20.0%
!! TTCATTGATGAAATTTACAA+CGG + tig0020834:101217-101236 None:intergenic 20.0%
!! TAAACAATTAATTCCAACTT+TGG + tig0020834:101604-101623 None:intergenic 20.0%
!!! GATTTGTTGATTTATTAGTT+TGG - tig0020834:102057-102076 Msa1386670:five_prime_UTR 20.0%
!! TAATTGTAAGGTTATTTGTT+TGG - tig0020834:102178-102197 Msa1386670:five_prime_UTR 20.0%
!! TGAACCTTCCTTTTTATATT+TGG - tig0020834:99433-99452 Msa1386670:three_prime_UTR 25.0%
! TAGTCCAAATATAAAAAGGA+AGG + tig0020834:99440-99459 None:intergenic 25.0%
! TAAAAATATACTGCATGGAT+AGG + tig0020834:99937-99956 None:intergenic 25.0%
!! TCAAGTTTAAGATATGATGA+TGG + tig0020834:100484-100503 None:intergenic 25.0%
!! TTTTTCATATGCATCTTCTA+AGG + tig0020834:101103-101122 None:intergenic 25.0%
! AATTGTTTACAAAGTAATGG+TGG - tig0020834:101615-101634 Msa1386670:CDS 25.0%
! ATTTGTGGTTCAGAATAATA+AGG - tig0020834:101845-101864 Msa1386670:CDS 25.0%
! ATGCTAAATAATTCAAGTAG+TGG + tig0020834:102003-102022 None:intergenic 25.0%
! TTCTGTTACTCAAATTTGTA+AGG - tig0020834:102223-102242 Msa1386670:five_prime_UTR 25.0%
AATGTCTAGGAATGAAGTAT+GGG + tig0020834:99528-99547 None:intergenic 30.0%
! AACAACAACAAAAAAGTACG+AGG + tig0020834:99616-99635 None:intergenic 30.0%
GAAACATCATCTTACTTTGA+TGG - tig0020834:99768-99787 Msa1386670:CDS 30.0%
!!! GATTTTTGGTTGGATGAAAA+GGG + tig0020834:99815-99834 None:intergenic 30.0%
AGAGCTAAAAATATACTGCA+TGG + tig0020834:99942-99961 None:intergenic 30.0%
!! CTACTGATTTGGTTCAAAAT+TGG - tig0020834:99998-100017 Msa1386670:CDS 30.0%
! CAAAGAAATGGCTAATTTTC+AGG - tig0020834:100074-100093 Msa1386670:CDS 30.0%
!! GCTAATTTTCAGGATTATCA+TGG - tig0020834:100084-100103 Msa1386670:CDS 30.0%
! ATATGAATTTTTACAGGCTG+TGG - tig0020834:100201-100220 Msa1386670:CDS 30.0%
! AAATTCATGTCTAGAACAAG+AGG - tig0020834:100226-100245 Msa1386670:CDS 30.0%
TAATAACTAAGGCTGATTAG+TGG + tig0020834:100693-100712 None:intergenic 30.0%
GAAGATAACATCAGAATCAA+AGG - tig0020834:101129-101148 Msa1386670:intron 30.0%
CGTATATTTCATCGCTTATT+AGG + tig0020834:101251-101270 None:intergenic 30.0%
TTACAGTCTTTCAAAAGACA+TGG - tig0020834:101368-101387 Msa1386670:CDS 30.0%
TACAGTCTTTCAAAAGACAT+GGG - tig0020834:101369-101388 Msa1386670:CDS 30.0%
!! TTATACCAACTCTAAAACCA+GGG + tig0020834:101398-101417 None:intergenic 30.0%
!! ATTATACCAACTCTAAAACC+AGG + tig0020834:101399-101418 None:intergenic 30.0%
! ATGTACAGAATTTTCACTAG+TGG - tig0020834:101573-101592 Msa1386670:CDS 30.0%
AGCTACATTTGAATCAGAAT+TGG - tig0020834:101677-101696 Msa1386670:CDS 30.0%
TTGAATCAGAATTGGAACTT+TGG - tig0020834:101685-101704 Msa1386670:intron 30.0%
GTTAAGATTAATGTTTCACC+TGG - tig0020834:101726-101745 Msa1386670:intron 30.0%
ATGTGCAAATTGCTTTACAA+AGG - tig0020834:101814-101833 Msa1386670:intron 30.0%
ACAAAGGATTAGATCATTTG+TGG - tig0020834:101830-101849 Msa1386670:CDS 30.0%
TCAGAATAATAAGGAGGTTA+TGG - tig0020834:101854-101873 Msa1386670:CDS 30.0%
!!! CATCAAACCTTCTTGTTTTA+AGG + tig0020834:101929-101948 None:intergenic 30.0%
ATGTTGTGTTCCTTTAATGT+TGG - tig0020834:102088-102107 Msa1386670:five_prime_UTR 30.0%
TGTTGTGTTCCTTTAATGTT+GGG - tig0020834:102089-102108 Msa1386670:five_prime_UTR 30.0%
! AACAGAACACAGATATTTTC+TGG + tig0020834:102210-102229 None:intergenic 30.0%
! ATTTGCTAGCTAGACTCTTA+CGG - tig0020834:99391-99410 Msa1386670:three_prime_UTR 35.0%
AAAAAGGAAGGTTCACATGA+AGG + tig0020834:99428-99447 None:intergenic 35.0%
ATGTCTAGGAATGAAGTATG+GGG + tig0020834:99527-99546 None:intergenic 35.0%
CAATGTCTAGGAATGAAGTA+TGG + tig0020834:99529-99548 None:intergenic 35.0%
AGTTAGAGATTGCAATGTCT+AGG + tig0020834:99541-99560 None:intergenic 35.0%
TCTTAGACAACAATTGAGGT+TGG + tig0020834:99725-99744 None:intergenic 35.0%
GCTATCTTAGACAACAATTG+AGG + tig0020834:99729-99748 None:intergenic 35.0%
CATCATCTTACTTTGATGGA+TGG - tig0020834:99772-99791 Msa1386670:CDS 35.0%
!!! GGATTTTTGGTTGGATGAAA+AGG + tig0020834:99816-99835 None:intergenic 35.0%
! GATAACACCATGAGGATTTT+TGG + tig0020834:99829-99848 None:intergenic 35.0%
CAGGTATATATCAAGCTTTG+AGG - tig0020834:99870-99889 Msa1386670:CDS 35.0%
! TTTCCAGCTTACTACTGATT+TGG - tig0020834:99987-100006 Msa1386670:CDS 35.0%
!! TCCTTCTAGAGTACAAATTG+AGG + tig0020834:100043-100062 None:intergenic 35.0%
TGAATTGAATGTACATACCC+TGG + tig0020834:100376-100395 None:intergenic 35.0%
TTTATAGTGCAATCAGCTAC+AGG - tig0020834:100520-100539 Msa1386670:CDS 35.0%
TCACTGCACTGTAAAGTAAA+CGG - tig0020834:100599-100618 Msa1386670:CDS 35.0%
!! CAGTAAAACATTTTCAAGCG+CGG - tig0020834:100622-100641 Msa1386670:CDS 35.0%
!!! TGGAACTGACTTTTTCAACA+AGG - tig0020834:100759-100778 Msa1386670:intron 35.0%
!!! GGAACTGACTTTTTCAACAA+GGG - tig0020834:100760-100779 Msa1386670:intron 35.0%
GCAGATTTGATAGAGATTTG+AGG - tig0020834:101007-101026 Msa1386670:intron 35.0%
GATTTGATAGAGATTTGAGG+TGG - tig0020834:101010-101029 Msa1386670:intron 35.0%
GATTCTGATGTTATCTTCTG+TGG + tig0020834:101127-101146 None:intergenic 35.0%
ACAAATCCCTCAAATCCATT+AGG - tig0020834:101162-101181 Msa1386670:intron 35.0%
AAATCCATTAGGCACAGTTA+TGG - tig0020834:101173-101192 Msa1386670:intron 35.0%
CAGCTATGCTTATGAAACTT+GGG + tig0020834:101293-101312 None:intergenic 35.0%
TCAGCTATGCTTATGAAACT+TGG + tig0020834:101294-101313 None:intergenic 35.0%
AAACTATGTGAACGAGGTTA+CGG + tig0020834:101350-101369 None:intergenic 35.0%
AACACAGACACAATACTTGA+TGG - tig0020834:101482-101501 Msa1386670:intron 35.0%
!! ACTAGTGGATTAACCAAAGT+TGG - tig0020834:101588-101607 Msa1386670:CDS 35.0%
GAACAATGAAATGAAACACC+AGG + tig0020834:101747-101766 None:intergenic 35.0%
TAGAGTGTGTTATGCTAACA+TGG - tig0020834:101782-101801 Msa1386670:intron 35.0%
TGTGGTTCAGAATAATAAGG+AGG - tig0020834:101848-101867 Msa1386670:CDS 35.0%
GGTTAAGCCTTAAAACAAGA+AGG - tig0020834:101919-101938 Msa1386670:CDS 35.0%
GTTGTGTTCCTTTAATGTTG+GGG - tig0020834:102090-102109 Msa1386670:five_prime_UTR 35.0%
TTGTGTTCCTTTAATGTTGG+GGG - tig0020834:102091-102110 Msa1386670:five_prime_UTR 35.0%
AAAAATGCCCCCAACATTAA+AGG + tig0020834:102101-102120 None:intergenic 35.0%
! TTTTCACCTACCAAATCACA+TGG - tig0020834:102125-102144 Msa1386670:five_prime_UTR 35.0%
TTTCACCTACCAAATCACAT+GGG - tig0020834:102126-102145 Msa1386670:five_prime_UTR 35.0%
AGGAAGAAGCGAATTTGTGT+GGG + tig0020834:99596-99615 None:intergenic 40.0%
! TTGTTGTCTAAGATAGCCAC+TGG - tig0020834:99732-99751 Msa1386670:CDS 40.0%
CATCCAACCAAAAATCCTCA+TGG - tig0020834:99819-99838 Msa1386670:CDS 40.0%
!!! ACACCATGAGGATTTTTGGT+TGG + tig0020834:99825-99844 None:intergenic 40.0%
!! TCCTCATGGTGTTATCCAAA+TGG - tig0020834:99833-99852 Msa1386670:CDS 40.0%
!! CCTCATGGTGTTATCCAAAT+GGG - tig0020834:99834-99853 Msa1386670:CDS 40.0%
GAACCAAATCAGTAGTAAGC+TGG + tig0020834:99993-100012 None:intergenic 40.0%
GAGTACAAATTGAGGCTTCT+GGG + tig0020834:100035-100054 None:intergenic 40.0%
AGAGTACAAATTGAGGCTTC+TGG + tig0020834:100036-100055 None:intergenic 40.0%
GCCTCAATTTGTACTCTAGA+AGG - tig0020834:100039-100058 Msa1386670:CDS 40.0%
!!! AGATCCTGGTGATGCTTTTT+TGG - tig0020834:100333-100352 Msa1386670:CDS 40.0%
TGTACATACCCTGGATAGTA+AGG + tig0020834:100367-100386 None:intergenic 40.0%
TCCATCAAAATTCACTACCC+TGG + tig0020834:100743-100762 None:intergenic 40.0%
TTTGCACTTTCGCAGATAAC+TGG + tig0020834:101057-101076 None:intergenic 40.0%
!! ACTGTGCCTAATGGATTTGA+GGG + tig0020834:101171-101190 None:intergenic 40.0%
!! AACTGTGCCTAATGGATTTG+AGG + tig0020834:101172-101191 None:intergenic 40.0%
CAACGGTTCTTAATGTGCTT+CGG + tig0020834:101200-101219 None:intergenic 40.0%
CGATGAAATATACGCTGCAA+CGG - tig0020834:101257-101276 Msa1386670:intron 40.0%
CTATGCTTATGAAACTTGGG+TGG + tig0020834:101290-101309 None:intergenic 40.0%
GACTGTAAACTATGTGAACG+AGG + tig0020834:101356-101375 None:intergenic 40.0%
TTTGCGCGCACAATTTACAA+CGG + tig0020834:101439-101458 None:intergenic 40.0%
! TTCTTGCTGAAAGTGCAAAG+AGG - tig0020834:101541-101560 Msa1386670:intron 40.0%
!!! GTAATGGTGGACTTTTTGTG+TGG - tig0020834:101628-101647 Msa1386670:CDS 40.0%
! TTTGTGTGGATGGATTTGAG+AGG - tig0020834:101642-101661 Msa1386670:CDS 40.0%
GGATTTGAGAGGACTTCTTA+AGG - tig0020834:101653-101672 Msa1386670:CDS 40.0%
! TCATTTCATTGTTCTGAGCC+AGG - tig0020834:101753-101772 Msa1386670:intron 40.0%
! CATTTCATTGTTCTGAGCCA+GGG - tig0020834:101754-101773 Msa1386670:intron 40.0%
AGAAGAACACTAAACCTTGC+TGG - tig0020834:101883-101902 Msa1386670:CDS 40.0%
CTCAAATTACTATGCCAGCA+AGG + tig0020834:101900-101919 None:intergenic 40.0%
CTTGCTGGCATAGTAATTTG+AGG - tig0020834:101898-101917 Msa1386670:CDS 40.0%
!! CAAGTAGTGGCTTTAACAAG+AGG + tig0020834:101990-102009 None:intergenic 40.0%
!! ACAAACCCATGTGATTTGGT+AGG + tig0020834:102134-102153 None:intergenic 40.0%
TACCAAATCACATGGGTTTG+TGG - tig0020834:102133-102152 Msa1386670:five_prime_UTR 40.0%
GAAGGTTCACATGAAGGTGA+TGG + tig0020834:99422-99441 None:intergenic 45.0%
TCTAGGAATGAAGTATGGGG+TGG + tig0020834:99524-99543 None:intergenic 45.0%
GAGGAAGAAGCGAATTTGTG+TGG + tig0020834:99597-99616 None:intergenic 45.0%
! TCTAAGATAGCCACTGGTGA+TGG - tig0020834:99738-99757 Msa1386670:CDS 45.0%
CCCATTTGGATAACACCATG+AGG + tig0020834:99837-99856 None:intergenic 45.0%
GATTCTCTGCAAGACCCATT+TGG + tig0020834:99851-99870 None:intergenic 45.0%
AATGGGTCTTGCAGAGAATC+AGG - tig0020834:99851-99870 Msa1386670:CDS 45.0%
CCACTCACATTTCTGAACTC+TGG + tig0020834:100114-100133 None:intergenic 45.0%
CCAGAGTTCAGAAATGTGAG+TGG - tig0020834:100111-100130 Msa1386670:CDS 45.0%
CCACTCATCACAATACGATC+AGG + tig0020834:100271-100290 None:intergenic 45.0%
CCTGATCGTATTGTGATGAG+TGG - tig0020834:100268-100287 Msa1386670:CDS 45.0%
GATCGTATTGTGATGAGTGG+TGG - tig0020834:100271-100290 Msa1386670:CDS 45.0%
ATCTGCCAAACAAAAGGCAG+TGG + tig0020834:100317-100336 None:intergenic 45.0%
ACCAGGATCTGCCAAACAAA+AGG + tig0020834:100323-100342 None:intergenic 45.0%
TGCCTACTCCTTACTATCCA+GGG - tig0020834:100356-100375 Msa1386670:CDS 45.0%
TACCCTGGATAGTAAGGAGT+AGG + tig0020834:100361-100380 None:intergenic 45.0%
TCCAGTCATCATTAGAAGCC+AGG - tig0020834:100722-100741 Msa1386670:intron 45.0%
CCAGTCATCATTAGAAGCCA+GGG - tig0020834:100723-100742 Msa1386670:intron 45.0%
! GCCAGGGTAGTGAATTTTGA+TGG - tig0020834:100739-100758 Msa1386670:intron 45.0%
! AGAGATTTGAGGTGGAGAAC+AGG - tig0020834:101018-101037 Msa1386670:intron 45.0%
TCAAAAGACATGGGATTCCC+TGG - tig0020834:101378-101397 Msa1386670:CDS 45.0%
!!! GGATTCCCTGGTTTTAGAGT+TGG - tig0020834:101390-101409 Msa1386670:CDS 45.0%
!!! TGGTGGACTTTTTGTGTGGA+TGG - tig0020834:101632-101651 Msa1386670:CDS 45.0%
TAACACACTCTAAACCACCC+TGG + tig0020834:101774-101793 None:intergenic 45.0%
GACTGAGGAAATGGAGAATG+AGG + tig0020834:101966-101985 None:intergenic 45.0%
ACAAGAGGTGACTGAGGAAA+TGG + tig0020834:101975-101994 None:intergenic 45.0%
GCTTTAACAAGAGGTGACTG+AGG + tig0020834:101981-102000 None:intergenic 45.0%
CACCACAAACCCATGTGATT+TGG + tig0020834:102138-102157 None:intergenic 45.0%
!!! TAATTGATAATATTTATAAT+TGG + tig0020834:100430-100449 None:intergenic 5.0%
!! ATAGCCACTGGTGATGGACA+TGG - tig0020834:99744-99763 Msa1386670:CDS 50.0%
TTCACCATGTCCATCACCAG+TGG + tig0020834:99751-99770 None:intergenic 50.0%
! TGAGGCCACTGCCTTTTGTT+TGG - tig0020834:100309-100328 Msa1386670:CDS 50.0%
!! GCCTTTTGTTTGGCAGATCC+TGG - tig0020834:100319-100338 Msa1386670:CDS 50.0%
!! GGCACCAAAAAAGCATCACC+AGG + tig0020834:100340-100359 None:intergenic 50.0%
GTGCCTACTCCTTACTATCC+AGG - tig0020834:100355-100374 Msa1386670:CDS 50.0%
CAGTGCAGTGAGTTGCAAGT+CGG + tig0020834:100590-100609 None:intergenic 50.0%
CCCTGGCTTCTAATGATGAC+TGG + tig0020834:100726-100745 None:intergenic 50.0%
CGGTCCATAACTGTGCCTAA+TGG + tig0020834:101180-101199 None:intergenic 50.0%
! GCGCGCAAAATGTCGAGTTT+TGG - tig0020834:101450-101469 Msa1386670:CDS 50.0%
! TTCATTGTTCTGAGCCAGGG+TGG - tig0020834:101757-101776 Msa1386670:intron 50.0%
! GTGATGAGTGGTGGAGCAAC+TGG - tig0020834:100280-100299 Msa1386670:CDS 55.0%
TGGAGCAACTGGAGCACATG+AGG - tig0020834:100291-100310 Msa1386670:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0020834 gene 99380 102313 99380 ID=Msa1386670;Name=Msa1386670
tig0020834 mRNA 99380 102313 99380 ID=Msa1386670-mRNA-1;Parent=Msa1386670;Name=Msa1386670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=322|1|1|1|1|1|4|303|487
tig0020834 exon 99380 100682 99380 ID=Msa1386670-mRNA-1:exon:10302;Parent=Msa1386670-mRNA-1
tig0020834 exon 101316 101476 101316 ID=Msa1386670-mRNA-1:exon:10301;Parent=Msa1386670-mRNA-1
tig0020834 exon 101568 101699 101568 ID=Msa1386670-mRNA-1:exon:10300;Parent=Msa1386670-mRNA-1
tig0020834 exon 101821 102313 101821 ID=Msa1386670-mRNA-1:exon:10299;Parent=Msa1386670-mRNA-1
tig0020834 five_prime_UTR 101992 102313 101992 ID=Msa1386670-mRNA-1:five_prime_utr;Parent=Msa1386670-mRNA-1
tig0020834 CDS 101821 101991 101821 ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1
tig0020834 CDS 101568 101699 101568 ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1
tig0020834 CDS 101316 101476 101316 ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1
tig0020834 CDS 99683 100682 99683 ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1
tig0020834 three_prime_UTR 99380 99682 99380 ID=Msa1386670-mRNA-1:three_prime_utr;Parent=Msa1386670-mRNA-1
Gene Sequence

>Msa1386670

ATGGGACTTGTGAGCATGAACCAACCTCAATTGTTGTCTAAGATAGCCACTGGTGATGGACATGGTGAAACATCATCTTACTTTGATGGATGGAAAGCTTATGATAAAGACCCTTTTCATCCAACCAAAAATCCTCATGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTACTGATTTGGTTCAAAATTGGATAATGAGTAACCCAGAAGCCTCAATTTGTACTCTAGAAGGAGTACATAATTTCAAAGAAATGGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAATAGAGTGACATTTAATCCTGATCGTATTGTGATGAGTGGTGGAGCAACTGGAGCACATGAGGCCACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTGCCTACTCCTTACTATCCAGGATTTGATAGAGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTATCTGCGAAAGTGCAAACAATTTCAAATTAACAAAACAAGCCTTAGAAGATGCATATGAAAAAGCCACAGAAGATAACATCAGAATCAAAGGTTTACTCATAACAAATCCCTCAAATCCATTAGGCACAGTTATGGACCGAAGCACATTAAGAACCGTTGTAAATTTCATCAATGAAAAGCGTATTCACCTAATAAGCGATGAAATATACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATAGCTGAAATATTAGAACATGACACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCAAAAGACATGGGATTCCCTGGTTTTAGAGTTGGTATAATATACTCTTACAATGATACCGTTGTAAATTGTGCGCGCAAAATGTCGAGTTTTGGATTAGTTTCAACACAGACACAATACTTGATGGCAAAAATGCTATCTGATGATGAATTTGTTGAAAAGTTTCTTGCTGAAAGTGCAAAGAGGTTAGCACAAATGTACAGAATTTTCACTAGTGGATTAACCAAAGTTGGAATTAATTGTTTACAAAGTAATGGTGGACTTTTTGTGTGGATGGATTTGAGAGGACTTCTTAAGGAAGCTACATTTGAATCAGAATTGGAACTTTGGAGAGTGATTATTCATGAAGTTAAGATTAATGTTTCACCTGGTGTTTCATTTCATTGTTCTGAGCCAGGGTGGTTTAGAGTGTGTTATGCTAACATGGATGATAGAGATGTGCAAATTGCTTTACAAAGGATTAGATCATTTGTGGTTCAGAATAATAAGGAGGTTATGGTGTCTGAGAAGAACACTAAACCTTGCTGGCATAGTAATTTGAGGTTAAGCCTTAAAACAAGAAGGTTTGATGATATTGTAATGTCACCTCATTCTCCATTTCCTCAGTCACCTCTTGTTAAAGCCACTACTTGA

Protein sequence

>Msa1386670

MGLVSMNQPQLLSKIATGDGHGETSSYFDGWKAYDKDPFHPTKNPHGVIQMGLAENQLTTDLVQNWIMSNPEASICTLEGVHNFKEMANFQDYHGLPEFRNAVAKFMSRTRGNRVTFNPDRIVMSGGATGAHEATAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVKLVPVICESANNFKLTKQALEDAYEKATEDNIRIKGLLITNPSNPLGTVMDRSTLRTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEILEHDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDTVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVEKFLAESAKRLAQMYRIFTSGLTKVGINCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHEVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALQRIRSFVVQNNKEVMVSEKNTKPCWHSNLRLSLKTRRFDDIVMSPHSPFPQSPLVKATT*