Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1386670 | XP_013447110.1 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1386670 | sp|P31531|1A1C_SOYBN | 83.539 | 486 | 77 | 2 | 1 | 486 | 1 | 483 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1386670 | A0A072TUM5 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1363400 | Msa1386670 | 0.998916 | 9.828888e-282 | -8.615850e-47 |
Msa0306600 | Msa1386670 | 0.987665 | 4.361443e-171 | -8.615850e-47 |
Msa0576890 | Msa1386670 | 0.839381 | 1.639415e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1386670 | MtrunA17_Chr8g0387481 | 97.947 | 487 | 10 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1005 |
Msa1386670 | MtrunA17_Chr7g0248681 | 65.784 | 491 | 156 | 4 | 1 | 486 | 1 | 484 | 0.0 | 677 |
Msa1386670 | MtrunA17_Chr8g0348351 | 64.583 | 480 | 159 | 3 | 10 | 486 | 9 | 480 | 0.0 | 669 |
Msa1386670 | MtrunA17_Chr4g0054371 | 55.011 | 449 | 194 | 3 | 10 | 450 | 2 | 450 | 0.0 | 544 |
Msa1386670 | MtrunA17_Chr3g0135251 | 53.571 | 448 | 199 | 4 | 11 | 451 | 1 | 446 | 0.0 | 528 |
Msa1386670 | MtrunA17_Chr5g0400831 | 54.503 | 433 | 191 | 4 | 10 | 436 | 2 | 434 | 0.0 | 527 |
Msa1386670 | MtrunA17_Chr8g0389311 | 56.000 | 425 | 178 | 2 | 12 | 436 | 12 | 427 | 0.0 | 516 |
Msa1386670 | MtrunA17_Chr8g0389321 | 56.000 | 425 | 178 | 2 | 12 | 436 | 12 | 427 | 0.0 | 516 |
Msa1386670 | MtrunA17_Chr6g0488041 | 55.079 | 443 | 192 | 5 | 1 | 441 | 1 | 438 | 0.0 | 516 |
Msa1386670 | MtrunA17_Chr6g0475681 | 42.353 | 425 | 241 | 2 | 12 | 435 | 104 | 525 | 5.73e-136 | 402 |
Msa1386670 | MtrunA17_Chr5g0398431 | 40.541 | 407 | 239 | 1 | 25 | 431 | 85 | 488 | 5.42e-120 | 360 |
Msa1386670 | MtrunA17_Chr8g0345201 | 23.077 | 351 | 243 | 12 | 94 | 422 | 158 | 503 | 4.39e-17 | 84.0 |
Msa1386670 | MtrunA17_Chr5g0412871 | 24.257 | 404 | 265 | 17 | 39 | 408 | 42 | 438 | 4.17e-16 | 80.9 |
Msa1386670 | MtrunA17_Chr7g0267911 | 22.346 | 358 | 235 | 15 | 95 | 436 | 135 | 465 | 1.07e-15 | 79.3 |
Msa1386670 | MtrunA17_Chr4g0004131 | 22.599 | 354 | 234 | 14 | 87 | 432 | 61 | 382 | 6.77e-15 | 76.3 |
Msa1386670 | MtrunA17_Chr2g0324801 | 23.529 | 374 | 228 | 16 | 89 | 438 | 42 | 381 | 1.01e-13 | 72.8 |
Msa1386670 | MtrunA17_Chr3g0114811 | 23.559 | 399 | 241 | 16 | 46 | 422 | 86 | 442 | 1.97e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1386670 | AT4G11280.1 | 66.191 | 491 | 143 | 4 | 11 | 487 | 14 | 495 | 0.0 | 661 |
Msa1386670 | AT3G61510.1 | 62.062 | 485 | 170 | 3 | 10 | 485 | 9 | 488 | 0.0 | 645 |
Msa1386670 | AT1G01480.1 | 60.241 | 498 | 183 | 6 | 1 | 485 | 1 | 496 | 0.0 | 643 |
Msa1386670 | AT4G37770.1 | 58.275 | 429 | 172 | 3 | 11 | 435 | 3 | 428 | 0.0 | 550 |
Msa1386670 | AT2G22810.1 | 55.349 | 430 | 190 | 2 | 12 | 439 | 4 | 433 | 0.0 | 518 |
Msa1386670 | AT5G65800.1 | 54.128 | 436 | 197 | 2 | 12 | 445 | 4 | 438 | 2.39e-180 | 514 |
Msa1386670 | AT3G49700.1 | 54.005 | 437 | 198 | 2 | 12 | 446 | 4 | 439 | 3.07e-180 | 513 |
Msa1386670 | AT4G08040.1 | 53.613 | 429 | 197 | 2 | 11 | 439 | 1 | 427 | 8.49e-180 | 512 |
Msa1386670 | AT4G26200.1 | 56.000 | 425 | 185 | 2 | 12 | 435 | 18 | 441 | 5.27e-179 | 509 |
Msa1386670 | AT1G01480.2 | 58.163 | 392 | 149 | 6 | 107 | 485 | 1 | 390 | 5.90e-168 | 479 |
Msa1386670 | AT5G51690.1 | 42.822 | 411 | 231 | 2 | 25 | 434 | 82 | 489 | 1.23e-125 | 375 |
Msa1386670 | AT1G62960.1 | 42.615 | 413 | 227 | 6 | 22 | 432 | 143 | 547 | 1.07e-124 | 375 |
Msa1386670 | AT5G51690.2 | 44.068 | 354 | 195 | 1 | 79 | 432 | 14 | 364 | 3.99e-114 | 341 |
Msa1386670 | AT2G22250.1 | 24.533 | 375 | 229 | 16 | 80 | 432 | 74 | 416 | 7.83e-20 | 92.0 |
Msa1386670 | AT2G22250.3 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.17e-19 | 92.0 |
Msa1386670 | AT2G22250.2 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.17e-19 | 92.0 |
Msa1386670 | AT1G23310.2 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 3.94e-18 | 87.0 |
Msa1386670 | AT1G23310.1 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 4.25e-18 | 87.4 |
Msa1386670 | AT1G70580.4 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1386670 | AT1G70580.2 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1386670 | AT1G70580.3 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1386670 | AT1G70580.1 | 25.904 | 332 | 215 | 14 | 39 | 343 | 42 | 369 | 7.57e-18 | 86.7 |
Msa1386670 | AT1G17290.1 | 25.952 | 289 | 196 | 10 | 94 | 368 | 177 | 461 | 1.42e-17 | 85.9 |
Msa1386670 | AT1G72330.1 | 23.562 | 365 | 247 | 13 | 94 | 434 | 174 | 530 | 1.32e-16 | 82.8 |
Msa1386670 | AT5G36160.1 | 22.826 | 368 | 239 | 14 | 89 | 440 | 79 | 417 | 3.30e-15 | 78.2 |
Msa1386670 | AT1G72330.3 | 22.513 | 382 | 251 | 13 | 90 | 434 | 170 | 543 | 6.65e-15 | 77.8 |
Msa1386670 | AT1G72330.2 | 26.860 | 242 | 162 | 8 | 90 | 323 | 170 | 404 | 1.64e-14 | 75.9 |
Msa1386670 | AT1G77670.1 | 22.980 | 396 | 255 | 15 | 59 | 432 | 66 | 433 | 1.17e-11 | 67.0 |
Find 116 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTACTGATTTGGTTCAAAAT+TGG | 0.180902 | tig0020834:-101673 | Msa1386670:CDS |
CGTATATTTCATCGCTTATT+AGG | 0.237518 | tig0020834:+100423 | None:intergenic |
TAGACTATAGTAATTAATAA+TGG | 0.275952 | tig0020834:-101988 | Msa1386670:exon |
AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | tig0020834:+101638 | None:intergenic |
GATTTGTTGATTTATTAGTT+TGG | 0.286489 | tig0020834:-99614 | Msa1386670:three_prime_UTR |
TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | tig0020834:+100617 | None:intergenic |
AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | tig0020834:-100653 | Msa1386670:CDS |
CAATGTCTAGGAATGAAGTA+TGG | 0.312104 | tig0020834:+102145 | None:intergenic |
ATTTGTTGATTTATTAGTTT+GGG | 0.312718 | tig0020834:-99613 | Msa1386670:three_prime_UTR |
TTAGTAGTCCAAATATAAAA+AGG | 0.318247 | tig0020834:+102230 | None:intergenic |
TTTCCAGCTTACTACTGATT+TGG | 0.334888 | tig0020834:-101684 | Msa1386670:intron |
GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | tig0020834:-100221 | Msa1386670:CDS |
CACCACAAACCCATGTGATT+TGG | 0.343608 | tig0020834:+99536 | None:intergenic |
AGCTACATTTGAATCAGAAT+TGG | 0.358107 | tig0020834:-99994 | Msa1386670:CDS |
AGACTATAGTAATTAATAAT+GGG | 0.359076 | tig0020834:-101987 | Msa1386670:exon |
ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | tig0020834:-99826 | Msa1386670:CDS |
TAATAGAATTTGTAATTGTA+AGG | 0.374758 | tig0020834:-99505 | Msa1386670:three_prime_UTR |
TCCTCATGGTGTTATCCAAA+TGG | 0.374967 | tig0020834:-101838 | Msa1386670:CDS |
AGTACATAATTTCAAAGAAA+TGG | 0.381772 | tig0020834:-101609 | Msa1386670:CDS |
TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | tig0020834:-99817 | Msa1386670:CDS |
TTCTGTTACTCAAATTTGTA+AGG | 0.384841 | tig0020834:-99448 | Msa1386670:three_prime_UTR |
AACACAGACACAATACTTGA+TGG | 0.385707 | tig0020834:-100189 | Msa1386670:CDS |
GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | tig0020834:-101632 | Msa1386670:CDS |
ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | tig0020834:+99699 | None:intergenic |
TGTTGTGTTCCTTTAATGTT+GGG | 0.388781 | tig0020834:-99582 | Msa1386670:three_prime_UTR |
TCAGCTATGCTTATGAAACT+TGG | 0.389874 | tig0020834:+100380 | None:intergenic |
TAAACAATTAATTCCAACTT+TGG | 0.390119 | tig0020834:+100070 | None:intergenic |
TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | tig0020834:-99918 | Msa1386670:CDS |
ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | tig0020834:-100083 | Msa1386670:CDS |
GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | tig0020834:+101639 | None:intergenic |
GAAACATCATCTTACTTTGA+TGG | 0.397210 | tig0020834:-101903 | Msa1386670:CDS |
AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | tig0020834:-101820 | Msa1386670:intron |
GATTCTCTGCAAGACCCATT+TGG | 0.400674 | tig0020834:+101823 | None:intergenic |
GTGCCTACTCCTTACTATCC+AGG | 0.402112 | tig0020834:-101316 | Msa1386670:CDS |
GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | tig0020834:-100018 | Msa1386670:CDS |
TAATTGTAAGGTTATTTGTT+TGG | 0.410239 | tig0020834:-99493 | Msa1386670:three_prime_UTR |
TTGAATCAGAATTGGAACTT+TGG | 0.414840 | tig0020834:-99986 | Msa1386670:CDS |
CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | tig0020834:+100494 | None:intergenic |
CAACGGTTCTTAATGTGCTT+CGG | 0.426255 | tig0020834:+100474 | None:intergenic |
ATGTTGTGTTCCTTTAATGT+TGG | 0.439273 | tig0020834:-99583 | Msa1386670:three_prime_UTR |
AACTGTGCCTAATGGATTTG+AGG | 0.440159 | tig0020834:+100502 | None:intergenic |
GTGATGAGTGGTGGAGCAAC+TGG | 0.440195 | tig0020834:-101391 | Msa1386670:CDS |
CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | tig0020834:-99773 | Msa1386670:CDS |
ACAAAGGATTAGATCATTTG+TGG | 0.445312 | tig0020834:-99841 | Msa1386670:CDS |
ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | tig0020834:-100059 | Msa1386670:CDS |
TGTACATACCCTGGATAGTA+AGG | 0.457320 | tig0020834:+101307 | None:intergenic |
TACCAAATCACATGGGTTTG+TGG | 0.464212 | tig0020834:-99538 | Msa1386670:three_prime_UTR |
AAATCCATTAGGCACAGTTA+TGG | 0.479153 | tig0020834:-100498 | Msa1386670:CDS |
TCAAAAGACATGGGATTCCC+TGG | 0.480186 | tig0020834:-100293 | Msa1386670:CDS |
ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | tig0020834:+100503 | None:intergenic |
CATCATCTTACTTTGATGGA+TGG | 0.487153 | tig0020834:-101899 | Msa1386670:CDS |
CCTCATGGTGTTATCCAAAT+GGG | 0.487603 | tig0020834:-101837 | Msa1386670:CDS |
GATTCTGATGTTATCTTCTG+TGG | 0.488021 | tig0020834:+100547 | None:intergenic |
AGAAGAACACTAAACCTTGC+TGG | 0.489355 | tig0020834:-99788 | Msa1386670:CDS |
ATTTGCTAGCTAGACTCTTA+CGG | 0.490513 | tig0020834:-102280 | Msa1386670:five_prime_UTR |
CAGCTATGCTTATGAAACTT+GGG | 0.490646 | tig0020834:+100381 | None:intergenic |
GCAGATTTGATAGAGATTTG+AGG | 0.492142 | tig0020834:-100664 | Msa1386670:intron |
CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | tig0020834:-99917 | Msa1386670:CDS |
ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | tig0020834:+101351 | None:intergenic |
AAACTATGTGAACGAGGTTA+CGG | 0.508352 | tig0020834:+100324 | None:intergenic |
GGTTAAGCCTTAAAACAAGA+AGG | 0.509933 | tig0020834:-99752 | Msa1386670:CDS |
TCTTAGACAACAATTGAGGT+TGG | 0.527263 | tig0020834:+101949 | None:intergenic |
ACAAATCCCTCAAATCCATT+AGG | 0.528896 | tig0020834:-100509 | Msa1386670:CDS |
GCTATCTTAGACAACAATTG+AGG | 0.540964 | tig0020834:+101945 | None:intergenic |
GAAGATAACATCAGAATCAA+AGG | 0.542170 | tig0020834:-100542 | Msa1386670:CDS |
CCACTCATCACAATACGATC+AGG | 0.544520 | tig0020834:+101403 | None:intergenic |
TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | tig0020834:-101933 | Msa1386670:CDS |
CCACTCACATTTCTGAACTC+TGG | 0.552742 | tig0020834:+101560 | None:intergenic |
TGCCTACTCCTTACTATCCA+GGG | 0.556150 | tig0020834:-101315 | Msa1386670:intron |
TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | tig0020834:+101631 | None:intergenic |
CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | tig0020834:+99684 | None:intergenic |
ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | tig0020834:-99857 | Msa1386670:CDS |
GATTTGATAGAGATTTGAGG+TGG | 0.566695 | tig0020834:-100661 | Msa1386670:CDS |
ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | tig0020834:+101357 | None:intergenic |
AGTTAGAGATTGCAATGTCT+AGG | 0.574321 | tig0020834:+102133 | None:intergenic |
CTCAAATTACTATGCCAGCA+AGG | 0.576441 | tig0020834:+99774 | None:intergenic |
TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | tig0020834:-101939 | Msa1386670:CDS |
TGGAGCAACTGGAGCACATG+AGG | 0.576944 | tig0020834:-101380 | Msa1386670:CDS |
GTTAAGATTAATGTTTCACC+TGG | 0.580822 | tig0020834:-99945 | Msa1386670:CDS |
AATTGTTTACAAAGTAATGG+TGG | 0.584470 | tig0020834:-100056 | Msa1386670:CDS |
TTATACCAACTCTAAAACCA+GGG | 0.584528 | tig0020834:+100276 | None:intergenic |
GTTGTGTTCCTTTAATGTTG+GGG | 0.585562 | tig0020834:-99581 | Msa1386670:three_prime_UTR |
TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | tig0020834:-100302 | Msa1386670:CDS |
GACTGAGGAAATGGAGAATG+AGG | 0.586929 | tig0020834:+99708 | None:intergenic |
GAGGAAGAAGCGAATTTGTG+TGG | 0.587762 | tig0020834:+102077 | None:intergenic |
AAATTCATGTCTAGAACAAG+AGG | 0.590021 | tig0020834:-101445 | Msa1386670:CDS |
ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | tig0020834:+99671 | None:intergenic |
TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | tig0020834:-100303 | Msa1386670:CDS |
TTGTGTTCCTTTAATGTTGG+GGG | 0.595994 | tig0020834:-99580 | Msa1386670:three_prime_UTR |
TTCATTGATGAAATTTACAA+CGG | 0.599733 | tig0020834:+100457 | None:intergenic |
GAAGGTTCACATGAAGGTGA+TGG | 0.606036 | tig0020834:+102252 | None:intergenic |
TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | tig0020834:-99889 | Msa1386670:CDS |
ATTATACCAACTCTAAAACC+AGG | 0.620538 | tig0020834:+100275 | None:intergenic |
AATGTCTAGGAATGAAGTAT+GGG | 0.621148 | tig0020834:+102146 | None:intergenic |
TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | tig0020834:-100130 | Msa1386670:CDS |
TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | tig0020834:-99914 | Msa1386670:CDS |
ACAAACCCATGTGATTTGGT+AGG | 0.627809 | tig0020834:+99540 | None:intergenic |
AGGAAGAAGCGAATTTGTGT+GGG | 0.628251 | tig0020834:+102078 | None:intergenic |
CGATGAAATATACGCTGCAA+CGG | 0.630366 | tig0020834:-100414 | Msa1386670:CDS |
TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | tig0020834:-99823 | Msa1386670:CDS |
GATCGTATTGTGATGAGTGG+TGG | 0.635293 | tig0020834:-101400 | Msa1386670:CDS |
TACCCTGGATAGTAAGGAGT+AGG | 0.653482 | tig0020834:+101313 | None:intergenic |
CCTGATCGTATTGTGATGAG+TGG | 0.663504 | tig0020834:-101403 | Msa1386670:CDS |
GAACAATGAAATGAAACACC+AGG | 0.667249 | tig0020834:+99927 | None:intergenic |
CTATGCTTATGAAACTTGGG+TGG | 0.667408 | tig0020834:+100384 | None:intergenic |
TTCACCATGTCCATCACCAG+TGG | 0.671313 | tig0020834:+101923 | None:intergenic |
GACTGTAAACTATGTGAACG+AGG | 0.673179 | tig0020834:+100318 | None:intergenic |
TCTAGGAATGAAGTATGGGG+TGG | 0.678564 | tig0020834:+102150 | None:intergenic |
TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | tig0020834:-100029 | Msa1386670:CDS |
TTTGCGCGCACAATTTACAA+CGG | 0.684836 | tig0020834:+100235 | None:intergenic |
ATAGCCACTGGTGATGGACA+TGG | 0.685257 | tig0020834:-101927 | Msa1386670:CDS |
CCCATTTGGATAACACCATG+AGG | 0.688522 | tig0020834:+101837 | None:intergenic |
TTTCACCTACCAAATCACAT+GGG | 0.690480 | tig0020834:-99545 | Msa1386670:three_prime_UTR |
GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | tig0020834:+99693 | None:intergenic |
TAACACACTCTAAACCACCC+TGG | 0.698750 | tig0020834:+99900 | None:intergenic |
ATGTCTAGGAATGAAGTATG+GGG | 0.756503 | tig0020834:+102147 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAATATGAATTTTTAC+AGG | - | tig0020834:100195-100214 | Msa1386670:CDS | 10.0% |
!! | TAGACTATAGTAATTAATAA+TGG | - | tig0020834:99683-99702 | Msa1386670:CDS | 15.0% |
!! | AGACTATAGTAATTAATAAT+GGG | - | tig0020834:99684-99703 | Msa1386670:CDS | 15.0% |
!! | AAAAATAAAGATGAAGAAAA+GGG | + | tig0020834:100407-100426 | None:intergenic | 15.0% |
!! | GAATATTAAAGTAATAACTA+AGG | + | tig0020834:100704-100723 | None:intergenic | 15.0% |
!!! | AATGTTTTTGTTTTATTTTC+TGG | + | tig0020834:100901-100920 | None:intergenic | 15.0% |
!! | ATTAATTGTTTACAAAGTAA+TGG | - | tig0020834:101612-101631 | Msa1386670:CDS | 15.0% |
!!! | ATTTGTTGATTTATTAGTTT+GGG | - | tig0020834:102058-102077 | Msa1386670:five_prime_UTR | 15.0% |
!! | TAATAGAATTTGTAATTGTA+AGG | - | tig0020834:102166-102185 | Msa1386670:five_prime_UTR | 15.0% |
!! | TTAGTAGTCCAAATATAAAA+AGG | + | tig0020834:99444-99463 | None:intergenic | 20.0% |
!! | AGTACATAATTTCAAAGAAA+TGG | - | tig0020834:100062-100081 | Msa1386670:CDS | 20.0% |
!! | AAAATAAAGATGAAGAAAAG+GGG | + | tig0020834:100406-100425 | None:intergenic | 20.0% |
!! | GAAAAATAAAGATGAAGAAA+AGG | + | tig0020834:100408-100427 | None:intergenic | 20.0% |
!! | AAAATAAATAATTGCTCTGA+TGG | + | tig0020834:100848-100867 | None:intergenic | 20.0% |
!!! | TTATTTTCTGGTTTGTATAT+AGG | + | tig0020834:100889-100908 | None:intergenic | 20.0% |
!! | TAGAATATTATATGACTATG+TGG | + | tig0020834:100938-100957 | None:intergenic | 20.0% |
!! | TTCATTGATGAAATTTACAA+CGG | + | tig0020834:101217-101236 | None:intergenic | 20.0% |
!! | TAAACAATTAATTCCAACTT+TGG | + | tig0020834:101604-101623 | None:intergenic | 20.0% |
!!! | GATTTGTTGATTTATTAGTT+TGG | - | tig0020834:102057-102076 | Msa1386670:five_prime_UTR | 20.0% |
!! | TAATTGTAAGGTTATTTGTT+TGG | - | tig0020834:102178-102197 | Msa1386670:five_prime_UTR | 20.0% |
!! | TGAACCTTCCTTTTTATATT+TGG | - | tig0020834:99433-99452 | Msa1386670:three_prime_UTR | 25.0% |
! | TAGTCCAAATATAAAAAGGA+AGG | + | tig0020834:99440-99459 | None:intergenic | 25.0% |
! | TAAAAATATACTGCATGGAT+AGG | + | tig0020834:99937-99956 | None:intergenic | 25.0% |
!! | TCAAGTTTAAGATATGATGA+TGG | + | tig0020834:100484-100503 | None:intergenic | 25.0% |
!! | TTTTTCATATGCATCTTCTA+AGG | + | tig0020834:101103-101122 | None:intergenic | 25.0% |
! | AATTGTTTACAAAGTAATGG+TGG | - | tig0020834:101615-101634 | Msa1386670:CDS | 25.0% |
! | ATTTGTGGTTCAGAATAATA+AGG | - | tig0020834:101845-101864 | Msa1386670:CDS | 25.0% |
! | ATGCTAAATAATTCAAGTAG+TGG | + | tig0020834:102003-102022 | None:intergenic | 25.0% |
! | TTCTGTTACTCAAATTTGTA+AGG | - | tig0020834:102223-102242 | Msa1386670:five_prime_UTR | 25.0% |
AATGTCTAGGAATGAAGTAT+GGG | + | tig0020834:99528-99547 | None:intergenic | 30.0% | |
! | AACAACAACAAAAAAGTACG+AGG | + | tig0020834:99616-99635 | None:intergenic | 30.0% |
GAAACATCATCTTACTTTGA+TGG | - | tig0020834:99768-99787 | Msa1386670:CDS | 30.0% | |
!!! | GATTTTTGGTTGGATGAAAA+GGG | + | tig0020834:99815-99834 | None:intergenic | 30.0% |
AGAGCTAAAAATATACTGCA+TGG | + | tig0020834:99942-99961 | None:intergenic | 30.0% | |
!! | CTACTGATTTGGTTCAAAAT+TGG | - | tig0020834:99998-100017 | Msa1386670:CDS | 30.0% |
! | CAAAGAAATGGCTAATTTTC+AGG | - | tig0020834:100074-100093 | Msa1386670:CDS | 30.0% |
!! | GCTAATTTTCAGGATTATCA+TGG | - | tig0020834:100084-100103 | Msa1386670:CDS | 30.0% |
! | ATATGAATTTTTACAGGCTG+TGG | - | tig0020834:100201-100220 | Msa1386670:CDS | 30.0% |
! | AAATTCATGTCTAGAACAAG+AGG | - | tig0020834:100226-100245 | Msa1386670:CDS | 30.0% |
TAATAACTAAGGCTGATTAG+TGG | + | tig0020834:100693-100712 | None:intergenic | 30.0% | |
GAAGATAACATCAGAATCAA+AGG | - | tig0020834:101129-101148 | Msa1386670:intron | 30.0% | |
CGTATATTTCATCGCTTATT+AGG | + | tig0020834:101251-101270 | None:intergenic | 30.0% | |
TTACAGTCTTTCAAAAGACA+TGG | - | tig0020834:101368-101387 | Msa1386670:CDS | 30.0% | |
TACAGTCTTTCAAAAGACAT+GGG | - | tig0020834:101369-101388 | Msa1386670:CDS | 30.0% | |
!! | TTATACCAACTCTAAAACCA+GGG | + | tig0020834:101398-101417 | None:intergenic | 30.0% |
!! | ATTATACCAACTCTAAAACC+AGG | + | tig0020834:101399-101418 | None:intergenic | 30.0% |
! | ATGTACAGAATTTTCACTAG+TGG | - | tig0020834:101573-101592 | Msa1386670:CDS | 30.0% |
AGCTACATTTGAATCAGAAT+TGG | - | tig0020834:101677-101696 | Msa1386670:CDS | 30.0% | |
TTGAATCAGAATTGGAACTT+TGG | - | tig0020834:101685-101704 | Msa1386670:intron | 30.0% | |
GTTAAGATTAATGTTTCACC+TGG | - | tig0020834:101726-101745 | Msa1386670:intron | 30.0% | |
ATGTGCAAATTGCTTTACAA+AGG | - | tig0020834:101814-101833 | Msa1386670:intron | 30.0% | |
ACAAAGGATTAGATCATTTG+TGG | - | tig0020834:101830-101849 | Msa1386670:CDS | 30.0% | |
TCAGAATAATAAGGAGGTTA+TGG | - | tig0020834:101854-101873 | Msa1386670:CDS | 30.0% | |
!!! | CATCAAACCTTCTTGTTTTA+AGG | + | tig0020834:101929-101948 | None:intergenic | 30.0% |
ATGTTGTGTTCCTTTAATGT+TGG | - | tig0020834:102088-102107 | Msa1386670:five_prime_UTR | 30.0% | |
TGTTGTGTTCCTTTAATGTT+GGG | - | tig0020834:102089-102108 | Msa1386670:five_prime_UTR | 30.0% | |
! | AACAGAACACAGATATTTTC+TGG | + | tig0020834:102210-102229 | None:intergenic | 30.0% |
! | ATTTGCTAGCTAGACTCTTA+CGG | - | tig0020834:99391-99410 | Msa1386670:three_prime_UTR | 35.0% |
AAAAAGGAAGGTTCACATGA+AGG | + | tig0020834:99428-99447 | None:intergenic | 35.0% | |
ATGTCTAGGAATGAAGTATG+GGG | + | tig0020834:99527-99546 | None:intergenic | 35.0% | |
CAATGTCTAGGAATGAAGTA+TGG | + | tig0020834:99529-99548 | None:intergenic | 35.0% | |
AGTTAGAGATTGCAATGTCT+AGG | + | tig0020834:99541-99560 | None:intergenic | 35.0% | |
TCTTAGACAACAATTGAGGT+TGG | + | tig0020834:99725-99744 | None:intergenic | 35.0% | |
GCTATCTTAGACAACAATTG+AGG | + | tig0020834:99729-99748 | None:intergenic | 35.0% | |
CATCATCTTACTTTGATGGA+TGG | - | tig0020834:99772-99791 | Msa1386670:CDS | 35.0% | |
!!! | GGATTTTTGGTTGGATGAAA+AGG | + | tig0020834:99816-99835 | None:intergenic | 35.0% |
! | GATAACACCATGAGGATTTT+TGG | + | tig0020834:99829-99848 | None:intergenic | 35.0% |
CAGGTATATATCAAGCTTTG+AGG | - | tig0020834:99870-99889 | Msa1386670:CDS | 35.0% | |
! | TTTCCAGCTTACTACTGATT+TGG | - | tig0020834:99987-100006 | Msa1386670:CDS | 35.0% |
!! | TCCTTCTAGAGTACAAATTG+AGG | + | tig0020834:100043-100062 | None:intergenic | 35.0% |
TGAATTGAATGTACATACCC+TGG | + | tig0020834:100376-100395 | None:intergenic | 35.0% | |
TTTATAGTGCAATCAGCTAC+AGG | - | tig0020834:100520-100539 | Msa1386670:CDS | 35.0% | |
TCACTGCACTGTAAAGTAAA+CGG | - | tig0020834:100599-100618 | Msa1386670:CDS | 35.0% | |
!! | CAGTAAAACATTTTCAAGCG+CGG | - | tig0020834:100622-100641 | Msa1386670:CDS | 35.0% |
!!! | TGGAACTGACTTTTTCAACA+AGG | - | tig0020834:100759-100778 | Msa1386670:intron | 35.0% |
!!! | GGAACTGACTTTTTCAACAA+GGG | - | tig0020834:100760-100779 | Msa1386670:intron | 35.0% |
GCAGATTTGATAGAGATTTG+AGG | - | tig0020834:101007-101026 | Msa1386670:intron | 35.0% | |
GATTTGATAGAGATTTGAGG+TGG | - | tig0020834:101010-101029 | Msa1386670:intron | 35.0% | |
GATTCTGATGTTATCTTCTG+TGG | + | tig0020834:101127-101146 | None:intergenic | 35.0% | |
ACAAATCCCTCAAATCCATT+AGG | - | tig0020834:101162-101181 | Msa1386670:intron | 35.0% | |
AAATCCATTAGGCACAGTTA+TGG | - | tig0020834:101173-101192 | Msa1386670:intron | 35.0% | |
CAGCTATGCTTATGAAACTT+GGG | + | tig0020834:101293-101312 | None:intergenic | 35.0% | |
TCAGCTATGCTTATGAAACT+TGG | + | tig0020834:101294-101313 | None:intergenic | 35.0% | |
AAACTATGTGAACGAGGTTA+CGG | + | tig0020834:101350-101369 | None:intergenic | 35.0% | |
AACACAGACACAATACTTGA+TGG | - | tig0020834:101482-101501 | Msa1386670:intron | 35.0% | |
!! | ACTAGTGGATTAACCAAAGT+TGG | - | tig0020834:101588-101607 | Msa1386670:CDS | 35.0% |
GAACAATGAAATGAAACACC+AGG | + | tig0020834:101747-101766 | None:intergenic | 35.0% | |
TAGAGTGTGTTATGCTAACA+TGG | - | tig0020834:101782-101801 | Msa1386670:intron | 35.0% | |
TGTGGTTCAGAATAATAAGG+AGG | - | tig0020834:101848-101867 | Msa1386670:CDS | 35.0% | |
GGTTAAGCCTTAAAACAAGA+AGG | - | tig0020834:101919-101938 | Msa1386670:CDS | 35.0% | |
GTTGTGTTCCTTTAATGTTG+GGG | - | tig0020834:102090-102109 | Msa1386670:five_prime_UTR | 35.0% | |
TTGTGTTCCTTTAATGTTGG+GGG | - | tig0020834:102091-102110 | Msa1386670:five_prime_UTR | 35.0% | |
AAAAATGCCCCCAACATTAA+AGG | + | tig0020834:102101-102120 | None:intergenic | 35.0% | |
! | TTTTCACCTACCAAATCACA+TGG | - | tig0020834:102125-102144 | Msa1386670:five_prime_UTR | 35.0% |
TTTCACCTACCAAATCACAT+GGG | - | tig0020834:102126-102145 | Msa1386670:five_prime_UTR | 35.0% | |
AGGAAGAAGCGAATTTGTGT+GGG | + | tig0020834:99596-99615 | None:intergenic | 40.0% | |
! | TTGTTGTCTAAGATAGCCAC+TGG | - | tig0020834:99732-99751 | Msa1386670:CDS | 40.0% |
CATCCAACCAAAAATCCTCA+TGG | - | tig0020834:99819-99838 | Msa1386670:CDS | 40.0% | |
!!! | ACACCATGAGGATTTTTGGT+TGG | + | tig0020834:99825-99844 | None:intergenic | 40.0% |
!! | TCCTCATGGTGTTATCCAAA+TGG | - | tig0020834:99833-99852 | Msa1386670:CDS | 40.0% |
!! | CCTCATGGTGTTATCCAAAT+GGG | - | tig0020834:99834-99853 | Msa1386670:CDS | 40.0% |
GAACCAAATCAGTAGTAAGC+TGG | + | tig0020834:99993-100012 | None:intergenic | 40.0% | |
GAGTACAAATTGAGGCTTCT+GGG | + | tig0020834:100035-100054 | None:intergenic | 40.0% | |
AGAGTACAAATTGAGGCTTC+TGG | + | tig0020834:100036-100055 | None:intergenic | 40.0% | |
GCCTCAATTTGTACTCTAGA+AGG | - | tig0020834:100039-100058 | Msa1386670:CDS | 40.0% | |
!!! | AGATCCTGGTGATGCTTTTT+TGG | - | tig0020834:100333-100352 | Msa1386670:CDS | 40.0% |
TGTACATACCCTGGATAGTA+AGG | + | tig0020834:100367-100386 | None:intergenic | 40.0% | |
TCCATCAAAATTCACTACCC+TGG | + | tig0020834:100743-100762 | None:intergenic | 40.0% | |
TTTGCACTTTCGCAGATAAC+TGG | + | tig0020834:101057-101076 | None:intergenic | 40.0% | |
!! | ACTGTGCCTAATGGATTTGA+GGG | + | tig0020834:101171-101190 | None:intergenic | 40.0% |
!! | AACTGTGCCTAATGGATTTG+AGG | + | tig0020834:101172-101191 | None:intergenic | 40.0% |
CAACGGTTCTTAATGTGCTT+CGG | + | tig0020834:101200-101219 | None:intergenic | 40.0% | |
CGATGAAATATACGCTGCAA+CGG | - | tig0020834:101257-101276 | Msa1386670:intron | 40.0% | |
CTATGCTTATGAAACTTGGG+TGG | + | tig0020834:101290-101309 | None:intergenic | 40.0% | |
GACTGTAAACTATGTGAACG+AGG | + | tig0020834:101356-101375 | None:intergenic | 40.0% | |
TTTGCGCGCACAATTTACAA+CGG | + | tig0020834:101439-101458 | None:intergenic | 40.0% | |
! | TTCTTGCTGAAAGTGCAAAG+AGG | - | tig0020834:101541-101560 | Msa1386670:intron | 40.0% |
!!! | GTAATGGTGGACTTTTTGTG+TGG | - | tig0020834:101628-101647 | Msa1386670:CDS | 40.0% |
! | TTTGTGTGGATGGATTTGAG+AGG | - | tig0020834:101642-101661 | Msa1386670:CDS | 40.0% |
GGATTTGAGAGGACTTCTTA+AGG | - | tig0020834:101653-101672 | Msa1386670:CDS | 40.0% | |
! | TCATTTCATTGTTCTGAGCC+AGG | - | tig0020834:101753-101772 | Msa1386670:intron | 40.0% |
! | CATTTCATTGTTCTGAGCCA+GGG | - | tig0020834:101754-101773 | Msa1386670:intron | 40.0% |
AGAAGAACACTAAACCTTGC+TGG | - | tig0020834:101883-101902 | Msa1386670:CDS | 40.0% | |
CTCAAATTACTATGCCAGCA+AGG | + | tig0020834:101900-101919 | None:intergenic | 40.0% | |
CTTGCTGGCATAGTAATTTG+AGG | - | tig0020834:101898-101917 | Msa1386670:CDS | 40.0% | |
!! | CAAGTAGTGGCTTTAACAAG+AGG | + | tig0020834:101990-102009 | None:intergenic | 40.0% |
!! | ACAAACCCATGTGATTTGGT+AGG | + | tig0020834:102134-102153 | None:intergenic | 40.0% |
TACCAAATCACATGGGTTTG+TGG | - | tig0020834:102133-102152 | Msa1386670:five_prime_UTR | 40.0% | |
GAAGGTTCACATGAAGGTGA+TGG | + | tig0020834:99422-99441 | None:intergenic | 45.0% | |
TCTAGGAATGAAGTATGGGG+TGG | + | tig0020834:99524-99543 | None:intergenic | 45.0% | |
GAGGAAGAAGCGAATTTGTG+TGG | + | tig0020834:99597-99616 | None:intergenic | 45.0% | |
! | TCTAAGATAGCCACTGGTGA+TGG | - | tig0020834:99738-99757 | Msa1386670:CDS | 45.0% |
CCCATTTGGATAACACCATG+AGG | + | tig0020834:99837-99856 | None:intergenic | 45.0% | |
GATTCTCTGCAAGACCCATT+TGG | + | tig0020834:99851-99870 | None:intergenic | 45.0% | |
AATGGGTCTTGCAGAGAATC+AGG | - | tig0020834:99851-99870 | Msa1386670:CDS | 45.0% | |
CCACTCACATTTCTGAACTC+TGG | + | tig0020834:100114-100133 | None:intergenic | 45.0% | |
CCAGAGTTCAGAAATGTGAG+TGG | - | tig0020834:100111-100130 | Msa1386670:CDS | 45.0% | |
CCACTCATCACAATACGATC+AGG | + | tig0020834:100271-100290 | None:intergenic | 45.0% | |
CCTGATCGTATTGTGATGAG+TGG | - | tig0020834:100268-100287 | Msa1386670:CDS | 45.0% | |
GATCGTATTGTGATGAGTGG+TGG | - | tig0020834:100271-100290 | Msa1386670:CDS | 45.0% | |
ATCTGCCAAACAAAAGGCAG+TGG | + | tig0020834:100317-100336 | None:intergenic | 45.0% | |
ACCAGGATCTGCCAAACAAA+AGG | + | tig0020834:100323-100342 | None:intergenic | 45.0% | |
TGCCTACTCCTTACTATCCA+GGG | - | tig0020834:100356-100375 | Msa1386670:CDS | 45.0% | |
TACCCTGGATAGTAAGGAGT+AGG | + | tig0020834:100361-100380 | None:intergenic | 45.0% | |
TCCAGTCATCATTAGAAGCC+AGG | - | tig0020834:100722-100741 | Msa1386670:intron | 45.0% | |
CCAGTCATCATTAGAAGCCA+GGG | - | tig0020834:100723-100742 | Msa1386670:intron | 45.0% | |
! | GCCAGGGTAGTGAATTTTGA+TGG | - | tig0020834:100739-100758 | Msa1386670:intron | 45.0% |
! | AGAGATTTGAGGTGGAGAAC+AGG | - | tig0020834:101018-101037 | Msa1386670:intron | 45.0% |
TCAAAAGACATGGGATTCCC+TGG | - | tig0020834:101378-101397 | Msa1386670:CDS | 45.0% | |
!!! | GGATTCCCTGGTTTTAGAGT+TGG | - | tig0020834:101390-101409 | Msa1386670:CDS | 45.0% |
!!! | TGGTGGACTTTTTGTGTGGA+TGG | - | tig0020834:101632-101651 | Msa1386670:CDS | 45.0% |
TAACACACTCTAAACCACCC+TGG | + | tig0020834:101774-101793 | None:intergenic | 45.0% | |
GACTGAGGAAATGGAGAATG+AGG | + | tig0020834:101966-101985 | None:intergenic | 45.0% | |
ACAAGAGGTGACTGAGGAAA+TGG | + | tig0020834:101975-101994 | None:intergenic | 45.0% | |
GCTTTAACAAGAGGTGACTG+AGG | + | tig0020834:101981-102000 | None:intergenic | 45.0% | |
CACCACAAACCCATGTGATT+TGG | + | tig0020834:102138-102157 | None:intergenic | 45.0% | |
!!! | TAATTGATAATATTTATAAT+TGG | + | tig0020834:100430-100449 | None:intergenic | 5.0% |
!! | ATAGCCACTGGTGATGGACA+TGG | - | tig0020834:99744-99763 | Msa1386670:CDS | 50.0% |
TTCACCATGTCCATCACCAG+TGG | + | tig0020834:99751-99770 | None:intergenic | 50.0% | |
! | TGAGGCCACTGCCTTTTGTT+TGG | - | tig0020834:100309-100328 | Msa1386670:CDS | 50.0% |
!! | GCCTTTTGTTTGGCAGATCC+TGG | - | tig0020834:100319-100338 | Msa1386670:CDS | 50.0% |
!! | GGCACCAAAAAAGCATCACC+AGG | + | tig0020834:100340-100359 | None:intergenic | 50.0% |
GTGCCTACTCCTTACTATCC+AGG | - | tig0020834:100355-100374 | Msa1386670:CDS | 50.0% | |
CAGTGCAGTGAGTTGCAAGT+CGG | + | tig0020834:100590-100609 | None:intergenic | 50.0% | |
CCCTGGCTTCTAATGATGAC+TGG | + | tig0020834:100726-100745 | None:intergenic | 50.0% | |
CGGTCCATAACTGTGCCTAA+TGG | + | tig0020834:101180-101199 | None:intergenic | 50.0% | |
! | GCGCGCAAAATGTCGAGTTT+TGG | - | tig0020834:101450-101469 | Msa1386670:CDS | 50.0% |
! | TTCATTGTTCTGAGCCAGGG+TGG | - | tig0020834:101757-101776 | Msa1386670:intron | 50.0% |
! | GTGATGAGTGGTGGAGCAAC+TGG | - | tig0020834:100280-100299 | Msa1386670:CDS | 55.0% |
TGGAGCAACTGGAGCACATG+AGG | - | tig0020834:100291-100310 | Msa1386670:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0020834 | gene | 99380 | 102313 | 99380 | ID=Msa1386670;Name=Msa1386670 |
tig0020834 | mRNA | 99380 | 102313 | 99380 | ID=Msa1386670-mRNA-1;Parent=Msa1386670;Name=Msa1386670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=322|1|1|1|1|1|4|303|487 |
tig0020834 | exon | 99380 | 100682 | 99380 | ID=Msa1386670-mRNA-1:exon:10302;Parent=Msa1386670-mRNA-1 |
tig0020834 | exon | 101316 | 101476 | 101316 | ID=Msa1386670-mRNA-1:exon:10301;Parent=Msa1386670-mRNA-1 |
tig0020834 | exon | 101568 | 101699 | 101568 | ID=Msa1386670-mRNA-1:exon:10300;Parent=Msa1386670-mRNA-1 |
tig0020834 | exon | 101821 | 102313 | 101821 | ID=Msa1386670-mRNA-1:exon:10299;Parent=Msa1386670-mRNA-1 |
tig0020834 | five_prime_UTR | 101992 | 102313 | 101992 | ID=Msa1386670-mRNA-1:five_prime_utr;Parent=Msa1386670-mRNA-1 |
tig0020834 | CDS | 101821 | 101991 | 101821 | ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1 |
tig0020834 | CDS | 101568 | 101699 | 101568 | ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1 |
tig0020834 | CDS | 101316 | 101476 | 101316 | ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1 |
tig0020834 | CDS | 99683 | 100682 | 99683 | ID=Msa1386670-mRNA-1:cds;Parent=Msa1386670-mRNA-1 |
tig0020834 | three_prime_UTR | 99380 | 99682 | 99380 | ID=Msa1386670-mRNA-1:three_prime_utr;Parent=Msa1386670-mRNA-1 |
Gene Sequence |
Protein sequence |