AlfalfaGEDB | Msa0576890

M. sativa cultivar zhongmu-4 / Msa0576890

KEGG: K20772
GO: -
PFAM: PF00155.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576890	XP_013447110.1	94.632	503	11	2	1	503	1	487	0.0	988

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576890	sp\|P31531\|1A1C_SOYBN	80.478	502	79	4	1	502	1	483	0.0	849

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576890	A0A072TUM5	94.632	503	11	2	1	503	1	487	0.0	988

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005000	Msa0576890	-0.804046	2.607333e-49	-8.615850e-47
Msa0022750	Msa0576890	-0.811002	8.705870e-51	-8.615850e-47
Msa0039250	Msa0576890	0.802430	5.630649e-49	-8.615850e-47
Msa0055070	Msa0576890	0.843466	1.376972e-58	-8.615850e-47
Msa0064110	Msa0576890	0.805267	1.449966e-49	-8.615850e-47
Msa0077450	Msa0576890	0.810524	1.104600e-50	-8.615850e-47
Msa0098390	Msa0576890	-0.806134	9.534149e-50	-8.615850e-47
Msa0101020	Msa0576890	0.839029	2.023409e-57	-8.615850e-47
Msa0101880	Msa0576890	0.806190	9.275761e-50	-8.615850e-47
Msa0119320	Msa0576890	0.811873	5.630159e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576890	MtrunA17_Chr8g0387481	94.632	503	11	2	1	503	1	487	0.0	988
Msa0576890	MtrunA17_Chr7g0248681	63.314	507	158	6	1	502	1	484	0.0	655
Msa0576890	MtrunA17_Chr8g0348351	62.702	496	158	5	10	502	9	480	0.0	655
Msa0576890	MtrunA17_Chr4g0054371	53.118	465	194	5	10	466	2	450	0.0	528
Msa0576890	MtrunA17_Chr3g0135251	51.724	464	199	6	11	467	1	446	6.72e-180	513
Msa0576890	MtrunA17_Chr5g0400831	52.561	449	191	6	10	452	2	434	6.15e-179	511
Msa0576890	MtrunA17_Chr8g0389311	54.318	440	176	4	12	451	12	426	2.06e-177	505
Msa0576890	MtrunA17_Chr8g0389321	54.318	440	176	4	12	451	12	426	2.06e-177	505
Msa0576890	MtrunA17_Chr6g0488041	52.941	459	193	7	1	457	1	438	2.22e-175	500
Msa0576890	MtrunA17_Chr6g0475681	40.363	441	243	4	12	451	104	525	2.53e-128	384

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0576890	AT4G11280.1	63.905	507	144	6	11	503	14	495	0.0	645
Msa0576890	AT3G61510.1	59.880	501	171	5	10	501	9	488	0.0	628
Msa0576890	AT1G01480.1	57.782	514	186	8	1	501	1	496	0.0	620
Msa0576890	AT4G37770.1	56.404	445	171	5	11	451	3	428	0.0	538
Msa0576890	AT2G22810.1	53.363	446	190	4	12	455	4	433	4.36e-175	501
Msa0576890	AT4G08040.1	51.910	445	196	4	11	455	1	427	4.39e-175	501
Msa0576890	AT5G65800.1	52.212	452	197	4	12	461	4	438	5.67e-174	498
Msa0576890	AT3G49700.1	52.097	453	198	4	12	462	4	439	6.47e-174	498
Msa0576890	AT4G26200.1	53.741	441	186	4	12	451	18	441	2.87e-171	490
Msa0576890	AT1G01480.2	57.323	396	150	7	119	501	1	390	6.59e-165	472

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Find 118 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATGTGAACGAGGTTA+CGG	0.508352	4_1:-81050534	None:intergenic
AAATCCATTAGGCACAGTTA+TGG	0.479153	4_1:+81050360	Msa0576890:CDS
AAATTCATGTCTAGAACAAG+AGG	0.590021	4_1:+81049412	Msa0576890:CDS
AACACAGACACAATACTTGA+TGG	0.385707	4_1:+81050669	Msa0576890:CDS
AACTGTGCCTAATGGATTTG+AGG	0.440159	4_1:-81050356	None:intergenic
AATGGGTCTTGCAGAGAATC+AGG	0.399230	4_1:+81049037	Msa0576890:CDS
AATGTCTAGGAATGAAGTAT+GGG	0.540223	4_1:-81048711	None:intergenic
AATTGTTTACAAAGTAATGG+TGG	0.584470	4_1:+81050802	Msa0576890:CDS
ACAAAGGATTAGATCATTTG+TGG	0.445312	4_1:+81051017	Msa0576890:CDS
ACAAATCCCTCAAATCCATT+AGG	0.528896	4_1:+81050349	Msa0576890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTCCAGATATAAAAAGGA+AGG	-	chr4_1:81048626-81048645	None:intergenic	30.0%
AATGTCTAGGAATGAAGTAT+GGG	-	chr4_1:81048714-81048733	None:intergenic	30.0%
GAAACATCATCTTACTTTGA+TGG	+	chr4_1:81048954-81048973	Msa0576890:CDS	30.0%
AGAGCTAAAAATATACTGCA+TGG	-	chr4_1:81049128-81049147	None:intergenic	30.0%
TAATAACTAAGGCTGATTAG+TGG	-	chr4_1:81049880-81049899	None:intergenic	30.0%
GAAGATAACATCAGAATCAA+AGG	+	chr4_1:81050316-81050335	Msa0576890:CDS	30.0%
CGTATATTTCATCGCTTATT+AGG	-	chr4_1:81050438-81050457	None:intergenic	30.0%
CAGATATGCTTATGAAACTT+GGG	-	chr4_1:81050480-81050499	None:intergenic	30.0%
TCAGATATGCTTATGAAACT+TGG	-	chr4_1:81050481-81050500	None:intergenic	30.0%
TTACAGTCTTTCAAAAGACA+TGG	+	chr4_1:81050555-81050574	Msa0576890:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	81048566	81051500	81048566	ID=Msa0576890;Name=Msa0576890
chr4_1	mRNA	81048566	81051500	81048566	ID=Msa0576890-mRNA-1;Parent=Msa0576890;Name=Msa0576890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=322\|0.2\|0.5\|1\|1\|1\|6\|303\|503
chr4_1	exon	81048566	81049058	81048566	ID=Msa0576890-mRNA-1:exon:29136;Parent=Msa0576890-mRNA-1
chr4_1	exon	81049180	81049347	81049180	ID=Msa0576890-mRNA-1:exon:29137;Parent=Msa0576890-mRNA-1
chr4_1	exon	81049403	81049563	81049403	ID=Msa0576890-mRNA-1:exon:29138;Parent=Msa0576890-mRNA-1
chr4_1	exon	81049650	81049655	81049650	ID=Msa0576890-mRNA-1:exon:29139;Parent=Msa0576890-mRNA-1
chr4_1	exon	81049722	81049727	81049722	ID=Msa0576890-mRNA-1:exon:29140;Parent=Msa0576890-mRNA-1
chr4_1	exon	81050198	81051500	81050198	ID=Msa0576890-mRNA-1:exon:29141;Parent=Msa0576890-mRNA-1
chr4_1	five_prime_UTR	81048566	81048887	81048566	ID=Msa0576890-mRNA-1:five_prime_utr;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81048888	81049058	81048888	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81049180	81049347	81049180	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81049403	81049563	81049403	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81049650	81049655	81049650	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81049722	81049727	81049722	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	CDS	81050198	81051197	81050198	ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1
chr4_1	three_prime_UTR	81051198	81051500	81051198	ID=Msa0576890-mRNA-1:three_prime_utr;Parent=Msa0576890-mRNA-1

Gene Sequence

>Msa0576890

ATGGGACTTGTGAGCATGAACCAACCTCAATTGTTGTCTAAGATAGCCACTGGTGATGGACATGGTGAAACATCATCTTACTTTGATGGATGGAAAGCTTATGATAAAGACCCTTTTCATCCAACCAAAAATTCTGATGGTGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTGCTGATTTGGTTCAAAATTGGATAATGAGTAACCCAGAAGCCTCAATTTGTACTCTAGAAGGAGTACATAATTTCAAAGAAATGGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGTGAGTGGTGATAACAGTACATACAATAAGAATTTTGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAATAGAGTGACATTTAATCCTGATCGTATTGTGATGAGTGGTGGAGCAACTGGAGCACATGAGGCCACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTGCCTACTCCTTACTATCCAGGAAGATACTACAGATTTGATAGAGATTTGAGGTGGAGAACAGGAGTTAAACTTGTTCCAGTTATCTGCGAAAGTGCAAACAATTTCAAATTAACAAAACAAGCCTTAGAAGATGCATATGAAAAAGCCACAGAAGATAACATCAGAATCAAAGGTTTACTCATAACAAATCCCTCAAATCCATTAGGCACAGTTATGGACCGAAGCACATTAAGAACCGTTGTAAATTTCATCAATGAAAAGCGTATTCACCTAATAAGCGATGAAATATACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATATCTGAAATATTAGAACATGACACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCAAAAGACATGGGATTCCCTGGTTTTAGAGTTGGTATAATATACTCTTACAATGATACCGTTGTAAATTGTGCGCGCAAAATGTCGAGTTTTGGATTAGTTTCAACACAGACACAATACTTGATGGCAAAAATGCTATCTGATGATGAATTTGTTGAAAAGTTTCTTGCTGAAAGTGCAAAGAGGTTAGCACAAAGGTACAGAATTTTCACTAGTGGATTAACCAAAGTTGGAATTAATTGTTTACAAAGTAATGGTGGACTTTTTGTGTGGATGGATTTGAGAGGACTTCTTAAGGAAGCTACATTTGAATCAGAATTGGAACTTTGGAGAGTGATTATTCATGAAGTTAAGATTAATGTTTCACCTGGTGTTTCATTTCATTGTTCTGAGCCAGGGTGGTTTAGAGTGTGTTATGCTAACATGGATGATAGAGATGTGCAAATTGCTTTACAAAGGATTAGATCATTTGTGGTTCAGAATAATAAGGAGGTTATGGTGTCTGAGAAGAACACTAAACCTTGCTGGCATAGTAATTTGAGGTTAAGCCTTAAAACAGGAAGGTTTGATGATATTGTAATGTCACCTCATTCTCCATTTCCTCAGTCACCTCTTGTTAAAGCCACTACTTGA

Protein sequence

>Msa0576890

MGLVSMNQPQLLSKIATGDGHGETSSYFDGWKAYDKDPFHPTKNSDGVIQMGLAENQLTADLVQNWIMSNPEASICTLEGVHNFKEMANFQDYHGLPEFRNVSGDNSTYNKNFAVAKFMSRTRGNRVTFNPDRIVMSGGATGAHEATAFCLADPGDAFLVPTPYYPGRYYRFDRDLRWRTGVKLVPVICESANNFKLTKQALEDAYEKATEDNIRIKGLLITNPSNPLGTVMDRSTLRTVVNFINEKRIHLISDEIYAATVFSHPSFISISEILEHDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDTVVNCARKMSSFGLVSTQTQYLMAKMLSDDEFVEKFLAESAKRLAQRYRIFTSGLTKVGINCLQSNGGLFVWMDLRGLLKEATFESELELWRVIIHEVKINVSPGVSFHCSEPGWFRVCYANMDDRDVQIALQRIRSFVVQNNKEVMVSEKNTKPCWHSNLRLSLKTGRFDDIVMSPHSPFPQSPLVKATT*