Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576890 | XP_013447110.1 | 94.632 | 503 | 11 | 2 | 1 | 503 | 1 | 487 | 0.0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576890 | sp|P31531|1A1C_SOYBN | 80.478 | 502 | 79 | 4 | 1 | 502 | 1 | 483 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576890 | A0A072TUM5 | 94.632 | 503 | 11 | 2 | 1 | 503 | 1 | 487 | 0.0 | 988 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005000 | Msa0576890 | -0.804046 | 2.607333e-49 | -8.615850e-47 |
| Msa0022750 | Msa0576890 | -0.811002 | 8.705870e-51 | -8.615850e-47 |
| Msa0039250 | Msa0576890 | 0.802430 | 5.630649e-49 | -8.615850e-47 |
| Msa0055070 | Msa0576890 | 0.843466 | 1.376972e-58 | -8.615850e-47 |
| Msa0064110 | Msa0576890 | 0.805267 | 1.449966e-49 | -8.615850e-47 |
| Msa0077450 | Msa0576890 | 0.810524 | 1.104600e-50 | -8.615850e-47 |
| Msa0098390 | Msa0576890 | -0.806134 | 9.534149e-50 | -8.615850e-47 |
| Msa0101020 | Msa0576890 | 0.839029 | 2.023409e-57 | -8.615850e-47 |
| Msa0101880 | Msa0576890 | 0.806190 | 9.275761e-50 | -8.615850e-47 |
| Msa0119320 | Msa0576890 | 0.811873 | 5.630159e-51 | -8.615850e-47 |
| Msa0133720 | Msa0576890 | 0.805541 | 1.269986e-49 | -8.615850e-47 |
| Msa0133820 | Msa0576890 | 0.813021 | 3.159691e-51 | -8.615850e-47 |
| Msa0134000 | Msa0576890 | 0.822044 | 2.923779e-53 | -8.615850e-47 |
| Msa0142460 | Msa0576890 | 0.804961 | 1.679641e-49 | -8.615850e-47 |
| Msa0145070 | Msa0576890 | 0.822358 | 2.472845e-53 | -8.615850e-47 |
| Msa0145110 | Msa0576890 | 0.831465 | 1.644037e-55 | -8.615850e-47 |
| Msa0165300 | Msa0576890 | 0.808275 | 3.355401e-50 | -8.615850e-47 |
| Msa0181000 | Msa0576890 | 0.836964 | 6.870462e-57 | -8.615850e-47 |
| Msa0187030 | Msa0576890 | 0.806825 | 6.814543e-50 | -8.615850e-47 |
| Msa0193540 | Msa0576890 | 0.841493 | 4.596523e-58 | -8.615850e-47 |
| Msa0196340 | Msa0576890 | 0.818219 | 2.197164e-52 | -8.615850e-47 |
| Msa0200560 | Msa0576890 | 0.804073 | 2.572963e-49 | -8.615850e-47 |
| Msa0235470 | Msa0576890 | 0.802341 | 5.875340e-49 | -8.615850e-47 |
| Msa0238230 | Msa0576890 | 0.820983 | 5.141327e-53 | -8.615850e-47 |
| Msa0429090 | Msa0576890 | 0.839576 | 1.459091e-57 | -8.615850e-47 |
| Msa0436370 | Msa0576890 | 0.841206 | 5.468104e-58 | -8.615850e-47 |
| Msa0475500 | Msa0576890 | 0.821158 | 4.684985e-53 | -8.615850e-47 |
| Msa0274630 | Msa0576890 | 0.828391 | 9.227354e-55 | -8.615850e-47 |
| Msa0277420 | Msa0576890 | 0.819887 | 9.174171e-53 | -8.615850e-47 |
| Msa0306600 | Msa0576890 | 0.830030 | 3.694478e-55 | -8.615850e-47 |
| Msa0314060 | Msa0576890 | 0.811711 | 6.105840e-51 | -8.615850e-47 |
| Msa0317270 | Msa0576890 | 0.829781 | 4.248078e-55 | -8.615850e-47 |
| Msa0506790 | Msa0576890 | 0.807535 | 4.821776e-50 | -8.615850e-47 |
| Msa0514610 | Msa0576890 | 0.808901 | 2.465679e-50 | -8.615850e-47 |
| Msa0526940 | Msa0576890 | 0.802422 | 5.652148e-49 | -8.615850e-47 |
| Msa0572480 | Msa0576890 | 0.809045 | 2.297234e-50 | -8.615850e-47 |
| Msa0576890 | Msa0608200 | 0.812958 | 3.263014e-51 | -8.615850e-47 |
| Msa0576890 | Msa0619510 | 0.800971 | 1.121780e-48 | -8.615850e-47 |
| Msa0576890 | Msa0648520 | 0.852591 | 4.174616e-61 | -8.615850e-47 |
| Msa0576890 | Msa0659600 | 0.803360 | 3.617572e-49 | -8.615850e-47 |
| Msa0576890 | Msa0689760 | 0.802401 | 5.710307e-49 | -8.615850e-47 |
| Msa0576890 | Msa0691050 | 0.845165 | 4.814823e-59 | -8.615850e-47 |
| Msa0576890 | Msa0711070 | 0.801571 | 8.457682e-49 | -8.615850e-47 |
| Msa0576890 | Msa0716860 | 0.815164 | 1.063900e-51 | -8.615850e-47 |
| Msa0576890 | Msa0747720 | -0.805536 | 1.273489e-49 | -8.615850e-47 |
| Msa0576890 | Msa0784620 | 0.806785 | 6.949712e-50 | -8.615850e-47 |
| Msa0576890 | Msa0800770 | 0.801545 | 8.561106e-49 | -8.615850e-47 |
| Msa0576890 | Msa0861830 | 0.804713 | 1.892806e-49 | -8.615850e-47 |
| Msa0576890 | Msa1009390 | 0.856604 | 2.875137e-62 | -8.615850e-47 |
| Msa0576890 | Msa1010070 | 0.801626 | 8.237706e-49 | -8.615850e-47 |
| Msa0576890 | Msa1033970 | 0.821065 | 4.921852e-53 | -8.615850e-47 |
| Msa0576890 | Msa1038210 | -0.825346 | 4.927583e-54 | -8.615850e-47 |
| Msa0576890 | Msa1040520 | 0.802523 | 5.387544e-49 | -8.615850e-47 |
| Msa0576890 | Msa1053200 | 0.830058 | 3.635490e-55 | -8.615850e-47 |
| Msa0576890 | Msa1056460 | 0.810355 | 1.200899e-50 | -8.615850e-47 |
| Msa0576890 | Msa1071660 | 0.802764 | 4.805938e-49 | -8.615850e-47 |
| Msa0576890 | Msa1098270 | 0.804869 | 1.755784e-49 | -8.615850e-47 |
| Msa0576890 | Msa1098290 | 0.854159 | 1.481621e-61 | -8.615850e-47 |
| Msa0576890 | Msa1113590 | 0.803241 | 3.829397e-49 | -8.615850e-47 |
| Msa0576890 | Msa1114040 | 0.835637 | 1.494421e-56 | -8.615850e-47 |
| Msa0576890 | Msa1118710 | 0.800942 | 1.137437e-48 | -8.615850e-47 |
| Msa0576890 | Msa1118760 | 0.811735 | 6.034986e-51 | -8.615850e-47 |
| Msa0576890 | Msa1127770 | 0.832260 | 1.046027e-55 | -8.615850e-47 |
| Msa0576890 | Msa1133570 | 0.803110 | 4.076479e-49 | -8.615850e-47 |
| Msa0576890 | Msa1138320 | 0.862654 | 4.349209e-64 | -8.615850e-47 |
| Msa0576890 | Msa1158660 | 0.829292 | 5.584584e-55 | -8.615850e-47 |
| Msa0576890 | Msa1158770 | 0.816685 | 4.868302e-52 | -8.615850e-47 |
| Msa0576890 | Msa1182130 | 0.803101 | 4.093205e-49 | -8.615850e-47 |
| Msa0576890 | Msa1262960 | 0.804606 | 1.992706e-49 | -8.615850e-47 |
| Msa0576890 | Msa1286550 | 0.800045 | 1.732211e-48 | -8.615850e-47 |
| Msa0576890 | Msa1302060 | 0.801720 | 7.881773e-49 | -8.615850e-47 |
| Msa0576890 | Msa1340040 | -0.813905 | 2.020422e-51 | -8.615850e-47 |
| Msa0576890 | Msa1359920 | 0.814987 | 1.164244e-51 | -8.615850e-47 |
| Msa0576890 | Msa1363400 | 0.837816 | 4.157276e-57 | -8.615850e-47 |
| Msa0576890 | Msa1366300 | 0.828212 | 1.019435e-54 | -8.615850e-47 |
| Msa0576890 | Msa1379590 | 0.817322 | 3.502640e-52 | -8.615850e-47 |
| Msa0576890 | Msa1379850 | 0.841706 | 4.039387e-58 | -8.615850e-47 |
| Msa0576890 | Msa1386670 | 0.839381 | 1.639415e-57 | -8.615850e-47 |
| Msa0576890 | Msa1420250 | 0.802382 | 5.761707e-49 | -8.615850e-47 |
| Msa0576890 | Msa1422840 | 0.837305 | 5.620433e-57 | -8.615850e-47 |
| Msa0576890 | Msa1424640 | 0.816077 | 6.658582e-52 | -8.615850e-47 |
| Msa0576890 | Msa1433220 | 0.848010 | 8.047757e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576890 | MtrunA17_Chr8g0387481 | 94.632 | 503 | 11 | 2 | 1 | 503 | 1 | 487 | 0.0 | 988 |
| Msa0576890 | MtrunA17_Chr7g0248681 | 63.314 | 507 | 158 | 6 | 1 | 502 | 1 | 484 | 0.0 | 655 |
| Msa0576890 | MtrunA17_Chr8g0348351 | 62.702 | 496 | 158 | 5 | 10 | 502 | 9 | 480 | 0.0 | 655 |
| Msa0576890 | MtrunA17_Chr4g0054371 | 53.118 | 465 | 194 | 5 | 10 | 466 | 2 | 450 | 0.0 | 528 |
| Msa0576890 | MtrunA17_Chr3g0135251 | 51.724 | 464 | 199 | 6 | 11 | 467 | 1 | 446 | 6.72e-180 | 513 |
| Msa0576890 | MtrunA17_Chr5g0400831 | 52.561 | 449 | 191 | 6 | 10 | 452 | 2 | 434 | 6.15e-179 | 511 |
| Msa0576890 | MtrunA17_Chr8g0389311 | 54.318 | 440 | 176 | 4 | 12 | 451 | 12 | 426 | 2.06e-177 | 505 |
| Msa0576890 | MtrunA17_Chr8g0389321 | 54.318 | 440 | 176 | 4 | 12 | 451 | 12 | 426 | 2.06e-177 | 505 |
| Msa0576890 | MtrunA17_Chr6g0488041 | 52.941 | 459 | 193 | 7 | 1 | 457 | 1 | 438 | 2.22e-175 | 500 |
| Msa0576890 | MtrunA17_Chr6g0475681 | 40.363 | 441 | 243 | 4 | 12 | 451 | 104 | 525 | 2.53e-128 | 384 |
| Msa0576890 | MtrunA17_Chr5g0398431 | 38.771 | 423 | 240 | 3 | 25 | 447 | 85 | 488 | 7.46e-113 | 343 |
| Msa0576890 | MtrunA17_Chr8g0345201 | 25.000 | 332 | 218 | 13 | 130 | 438 | 180 | 503 | 6.00e-16 | 80.5 |
| Msa0576890 | MtrunA17_Chr7g0267911 | 21.994 | 341 | 227 | 14 | 125 | 452 | 151 | 465 | 5.68e-14 | 73.9 |
| Msa0576890 | MtrunA17_Chr4g0004131 | 21.951 | 369 | 234 | 14 | 87 | 448 | 61 | 382 | 1.03e-13 | 72.8 |
| Msa0576890 | MtrunA17_Chr8g0382671 | 23.315 | 356 | 220 | 17 | 125 | 460 | 153 | 475 | 1.55e-12 | 69.7 |
| Msa0576890 | MtrunA17_Chr5g0412871 | 24.234 | 359 | 231 | 15 | 87 | 424 | 100 | 438 | 7.19e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576890 | AT4G11280.1 | 63.905 | 507 | 144 | 6 | 11 | 503 | 14 | 495 | 0.0 | 645 |
| Msa0576890 | AT3G61510.1 | 59.880 | 501 | 171 | 5 | 10 | 501 | 9 | 488 | 0.0 | 628 |
| Msa0576890 | AT1G01480.1 | 57.782 | 514 | 186 | 8 | 1 | 501 | 1 | 496 | 0.0 | 620 |
| Msa0576890 | AT4G37770.1 | 56.404 | 445 | 171 | 5 | 11 | 451 | 3 | 428 | 0.0 | 538 |
| Msa0576890 | AT2G22810.1 | 53.363 | 446 | 190 | 4 | 12 | 455 | 4 | 433 | 4.36e-175 | 501 |
| Msa0576890 | AT4G08040.1 | 51.910 | 445 | 196 | 4 | 11 | 455 | 1 | 427 | 4.39e-175 | 501 |
| Msa0576890 | AT5G65800.1 | 52.212 | 452 | 197 | 4 | 12 | 461 | 4 | 438 | 5.67e-174 | 498 |
| Msa0576890 | AT3G49700.1 | 52.097 | 453 | 198 | 4 | 12 | 462 | 4 | 439 | 6.47e-174 | 498 |
| Msa0576890 | AT4G26200.1 | 53.741 | 441 | 186 | 4 | 12 | 451 | 18 | 441 | 2.87e-171 | 490 |
| Msa0576890 | AT1G01480.2 | 57.323 | 396 | 150 | 7 | 119 | 501 | 1 | 390 | 6.59e-165 | 472 |
| Msa0576890 | AT5G51690.1 | 41.218 | 427 | 231 | 4 | 25 | 450 | 82 | 489 | 1.85e-121 | 365 |
| Msa0576890 | AT1G62960.1 | 40.793 | 429 | 228 | 8 | 22 | 448 | 143 | 547 | 1.15e-117 | 357 |
| Msa0576890 | AT5G51690.2 | 41.667 | 372 | 198 | 3 | 79 | 450 | 14 | 366 | 8.79e-109 | 328 |
| Msa0576890 | AT2G22250.3 | 24.490 | 343 | 208 | 14 | 125 | 448 | 153 | 463 | 3.30e-16 | 81.6 |
| Msa0576890 | AT2G22250.2 | 24.490 | 343 | 208 | 14 | 125 | 448 | 153 | 463 | 3.30e-16 | 81.6 |
| Msa0576890 | AT2G22250.1 | 24.490 | 343 | 208 | 14 | 125 | 448 | 106 | 416 | 3.31e-16 | 81.3 |
| Msa0576890 | AT1G17290.1 | 27.138 | 269 | 176 | 10 | 130 | 384 | 199 | 461 | 8.30e-16 | 80.5 |
| Msa0576890 | AT1G72330.1 | 23.977 | 342 | 232 | 12 | 130 | 450 | 196 | 530 | 2.75e-15 | 79.0 |
| Msa0576890 | AT1G23310.2 | 24.451 | 364 | 224 | 17 | 87 | 424 | 100 | 438 | 3.35e-14 | 75.1 |
| Msa0576890 | AT1G23310.1 | 24.451 | 364 | 224 | 17 | 87 | 424 | 100 | 438 | 4.47e-14 | 75.1 |
| Msa0576890 | AT1G72330.3 | 23.099 | 355 | 232 | 12 | 130 | 450 | 196 | 543 | 1.07e-13 | 73.9 |
| Msa0576890 | AT1G70580.4 | 24.176 | 364 | 225 | 17 | 87 | 424 | 100 | 438 | 1.41e-13 | 73.2 |
| Msa0576890 | AT1G70580.2 | 24.176 | 364 | 225 | 17 | 87 | 424 | 100 | 438 | 1.41e-13 | 73.2 |
| Msa0576890 | AT1G70580.3 | 24.176 | 364 | 225 | 17 | 87 | 424 | 100 | 438 | 1.41e-13 | 73.2 |
| Msa0576890 | AT1G70580.1 | 24.176 | 364 | 225 | 17 | 87 | 424 | 100 | 438 | 1.41e-13 | 73.2 |
| Msa0576890 | AT1G72330.2 | 28.372 | 215 | 143 | 7 | 130 | 339 | 196 | 404 | 2.25e-12 | 69.3 |
Find 118 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGATTTGGTTCAAAAT+TGG | 0.164302 | 4_1:+81049184 | Msa0576890:CDS |
| CGTATATTTCATCGCTTATT+AGG | 0.237518 | 4_1:-81050435 | None:intergenic |
| TAGACTATAGTAATTAATAA+TGG | 0.275952 | 4_1:+81048869 | Msa0576890:exon |
| AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | 4_1:-81049219 | None:intergenic |
| GATTTGTTGATTTATTAGTT+TGG | 0.286489 | 4_1:+81051244 | Msa0576890:three_prime_UTR |
| TTTCCAGCTTACTGCTGATT+TGG | 0.296356 | 4_1:+81049173 | Msa0576890:intron |
| TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | 4_1:-81050241 | None:intergenic |
| CACCACAAACCCATGTGATT+TGG | 0.299200 | 4_1:-81051322 | None:intergenic |
| AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | 4_1:+81050205 | Msa0576890:CDS |
| TTAGTAGTCCAGATATAAAA+AGG | 0.305844 | 4_1:-81048627 | None:intergenic |
| CAATGTCTAGGAATGAAGTA+TGG | 0.312104 | 4_1:-81048712 | None:intergenic |
| ATTTGTTGATTTATTAGTTT+GGG | 0.312718 | 4_1:+81051245 | Msa0576890:three_prime_UTR |
| GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | 4_1:+81050637 | Msa0576890:CDS |
| AGCTACATTTGAATCAGAAT+TGG | 0.358107 | 4_1:+81050864 | Msa0576890:CDS |
| AGACTATAGTAATTAATAAT+GGG | 0.359076 | 4_1:+81048870 | Msa0576890:exon |
| ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | 4_1:+81051032 | Msa0576890:CDS |
| TTCTGATGGTGTTATCCAAA+TGG | 0.370329 | 4_1:+81049019 | Msa0576890:CDS |
| TAATAGAATTTGTAATTGTA+AGG | 0.374758 | 4_1:+81051353 | Msa0576890:three_prime_UTR |
| AGTACATAATTTCAAAGAAA+TGG | 0.381772 | 4_1:+81049248 | Msa0576890:CDS |
| TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | 4_1:+81051041 | Msa0576890:CDS |
| TTCTGTTACTCAAATTTGTA+AGG | 0.384841 | 4_1:+81051410 | Msa0576890:three_prime_UTR |
| AACACAGACACAATACTTGA+TGG | 0.385707 | 4_1:+81050669 | Msa0576890:CDS |
| GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | 4_1:+81049225 | Msa0576890:CDS |
| ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | 4_1:-81051159 | None:intergenic |
| TGTTGTGTTCCTTTAATGTT+GGG | 0.388781 | 4_1:+81051276 | Msa0576890:three_prime_UTR |
| TAAACAATTAATTCCAACTT+TGG | 0.390119 | 4_1:-81050788 | None:intergenic |
| TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | 4_1:+81050940 | Msa0576890:CDS |
| ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | 4_1:+81050775 | Msa0576890:CDS |
| GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | 4_1:-81049218 | None:intergenic |
| GAAACATCATCTTACTTTGA+TGG | 0.397210 | 4_1:+81048954 | Msa0576890:CDS |
| AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | 4_1:+81049037 | Msa0576890:CDS |
| GATTCTCTGCAAGACCCATT+TGG | 0.400674 | 4_1:-81049034 | None:intergenic |
| GTGCCTACTCCTTACTATCC+AGG | 0.402112 | 4_1:+81049541 | Msa0576890:CDS |
| GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | 4_1:+81050840 | Msa0576890:CDS |
| TCAGATATGCTTATGAAACT+TGG | 0.407331 | 4_1:-81050478 | None:intergenic |
| TAATTGTAAGGTTATTTGTT+TGG | 0.410239 | 4_1:+81051365 | Msa0576890:three_prime_UTR |
| TTGAATCAGAATTGGAACTT+TGG | 0.414840 | 4_1:+81050872 | Msa0576890:CDS |
| CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | 4_1:-81050364 | None:intergenic |
| CAACGGTTCTTAATGTGCTT+CGG | 0.426255 | 4_1:-81050384 | None:intergenic |
| ATGTTGTGTTCCTTTAATGT+TGG | 0.439273 | 4_1:+81051275 | Msa0576890:three_prime_UTR |
| AACTGTGCCTAATGGATTTG+AGG | 0.440159 | 4_1:-81050356 | None:intergenic |
| GTGATGAGTGGTGGAGCAAC+TGG | 0.440195 | 4_1:+81049466 | Msa0576890:CDS |
| CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | 4_1:+81051085 | Msa0576890:CDS |
| TACCAAATCACATGGGTTTG+TGG | 0.444371 | 4_1:+81051320 | Msa0576890:three_prime_UTR |
| ACAAAGGATTAGATCATTTG+TGG | 0.445312 | 4_1:+81051017 | Msa0576890:CDS |
| ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | 4_1:+81050799 | Msa0576890:CDS |
| TGTACATACCCTGGATAGTA+AGG | 0.457320 | 4_1:-81049550 | None:intergenic |
| TTGAGGTTAAGCCTTAAAAC+AGG | 0.470153 | 4_1:+81051102 | Msa0576890:CDS |
| AAATCCATTAGGCACAGTTA+TGG | 0.479153 | 4_1:+81050360 | Msa0576890:CDS |
| TCAAAAGACATGGGATTCCC+TGG | 0.480186 | 4_1:+81050565 | Msa0576890:CDS |
| ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | 4_1:-81050355 | None:intergenic |
| TCTGATGGTGTTATCCAAAT+GGG | 0.485730 | 4_1:+81049020 | Msa0576890:CDS |
| CATCATCTTACTTTGATGGA+TGG | 0.487153 | 4_1:+81048958 | Msa0576890:CDS |
| GATTCTGATGTTATCTTCTG+TGG | 0.488021 | 4_1:-81050311 | None:intergenic |
| AGAAGAACACTAAACCTTGC+TGG | 0.489355 | 4_1:+81051070 | Msa0576890:CDS |
| ATTTGCTAGCTAGACTCTTA+CGG | 0.490513 | 4_1:+81048577 | Msa0576890:five_prime_UTR |
| CAGATATGCTTATGAAACTT+GGG | 0.491656 | 4_1:-81050477 | None:intergenic |
| GCAGATTTGATAGAGATTTG+AGG | 0.492142 | 4_1:+81050194 | Msa0576890:intron |
| CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | 4_1:+81050941 | Msa0576890:CDS |
| ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | 4_1:-81049506 | None:intergenic |
| CATACTTCATTCCTAGACAT+TGG | 0.499080 | 4_1:+81048713 | Msa0576890:five_prime_UTR |
| AAACTATGTGAACGAGGTTA+CGG | 0.508352 | 4_1:-81050534 | None:intergenic |
| TCTTAGACAACAATTGAGGT+TGG | 0.527263 | 4_1:-81048908 | None:intergenic |
| ACAAATCCCTCAAATCCATT+AGG | 0.528896 | 4_1:+81050349 | Msa0576890:CDS |
| AATGTCTAGGAATGAAGTAT+GGG | 0.540223 | 4_1:-81048711 | None:intergenic |
| GCTATCTTAGACAACAATTG+AGG | 0.540964 | 4_1:-81048912 | None:intergenic |
| GAAGATAACATCAGAATCAA+AGG | 0.542170 | 4_1:+81050316 | Msa0576890:CDS |
| CCACTCATCACAATACGATC+AGG | 0.544520 | 4_1:-81049454 | None:intergenic |
| TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | 4_1:+81048924 | Msa0576890:CDS |
| CCACTCACATTTCTGAACTC+TGG | 0.552742 | 4_1:-81049297 | None:intergenic |
| TGCCTACTCCTTACTATCCA+GGG | 0.556150 | 4_1:+81049542 | Msa0576890:CDS |
| TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | 4_1:-81049226 | None:intergenic |
| CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | 4_1:-81051174 | None:intergenic |
| ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | 4_1:+81051001 | Msa0576890:CDS |
| GATTTGATAGAGATTTGAGG+TGG | 0.566695 | 4_1:+81050197 | Msa0576890:intron |
| ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | 4_1:-81049500 | None:intergenic |
| AGTTAGAGATTCCAATGTCT+AGG | 0.574321 | 4_1:-81048724 | None:intergenic |
| CTCAAATTACTATGCCAGCA+AGG | 0.576441 | 4_1:-81051084 | None:intergenic |
| TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | 4_1:+81048918 | Msa0576890:CDS |
| TGGAGCAACTGGAGCACATG+AGG | 0.576944 | 4_1:+81049477 | Msa0576890:CDS |
| GGTTAAGCCTTAAAACAGGA+AGG | 0.579184 | 4_1:+81051106 | Msa0576890:CDS |
| GTTAAGATTAATGTTTCACC+TGG | 0.580822 | 4_1:+81050913 | Msa0576890:CDS |
| AATTGTTTACAAAGTAATGG+TGG | 0.584470 | 4_1:+81050802 | Msa0576890:CDS |
| TTATACCAACTCTAAAACCA+GGG | 0.584528 | 4_1:-81050582 | None:intergenic |
| GTTGTGTTCCTTTAATGTTG+GGG | 0.585562 | 4_1:+81051277 | Msa0576890:three_prime_UTR |
| TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | 4_1:+81050556 | Msa0576890:CDS |
| GACTGAGGAAATGGAGAATG+AGG | 0.586929 | 4_1:-81051150 | None:intergenic |
| GAGGAAGAAGCGAATTTGTG+TGG | 0.587762 | 4_1:-81048780 | None:intergenic |
| AAATTCATGTCTAGAACAAG+AGG | 0.590021 | 4_1:+81049412 | Msa0576890:CDS |
| ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | 4_1:-81051187 | None:intergenic |
| TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | 4_1:+81050555 | Msa0576890:CDS |
| TTGTGTTCCTTTAATGTTGG+GGG | 0.595994 | 4_1:+81051278 | Msa0576890:three_prime_UTR |
| TTCATTGATGAAATTTACAA+CGG | 0.599733 | 4_1:-81050401 | None:intergenic |
| GAAGGTTCACATGAAGGTGA+TGG | 0.606036 | 4_1:-81048605 | None:intergenic |
| TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | 4_1:+81050969 | Msa0576890:CDS |
| ATTATACCAACTCTAAAACC+AGG | 0.620538 | 4_1:-81050583 | None:intergenic |
| TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | 4_1:+81050728 | Msa0576890:CDS |
| TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | 4_1:+81050944 | Msa0576890:CDS |
| AGGAAGAAGCGAATTTGTGT+GGG | 0.628251 | 4_1:-81048779 | None:intergenic |
| CGATGAAATATACGCTGCAA+CGG | 0.630366 | 4_1:+81050444 | Msa0576890:CDS |
| TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | 4_1:+81051035 | Msa0576890:CDS |
| GATCGTATTGTGATGAGTGG+TGG | 0.635293 | 4_1:+81049457 | Msa0576890:CDS |
| GTGCAAAGAGGTTAGCACAA+AGG | 0.640437 | 4_1:+81050740 | Msa0576890:CDS |
| TACCCTGGATAGTAAGGAGT+AGG | 0.653482 | 4_1:-81049544 | None:intergenic |
| CCTGATCGTATTGTGATGAG+TGG | 0.663504 | 4_1:+81049454 | Msa0576890:CDS |
| GAACAATGAAATGAAACACC+AGG | 0.667249 | 4_1:-81050931 | None:intergenic |
| ATATGCTTATGAAACTTGGG+TGG | 0.669331 | 4_1:-81050474 | None:intergenic |
| TTCACCATGTCCATCACCAG+TGG | 0.671313 | 4_1:-81048934 | None:intergenic |
| GACTGTAAACTATGTGAACG+AGG | 0.673179 | 4_1:-81050540 | None:intergenic |
| TCTAGGAATGAAGTATGGGG+TGG | 0.678564 | 4_1:-81048707 | None:intergenic |
| TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | 4_1:+81050829 | Msa0576890:CDS |
| TTTGCGCGCACAATTTACAA+CGG | 0.684836 | 4_1:-81050623 | None:intergenic |
| ATAGCCACTGGTGATGGACA+TGG | 0.685257 | 4_1:+81048930 | Msa0576890:CDS |
| CCAGAGTTCAGAAATGTGAG+TGG | 0.690318 | 4_1:+81049297 | Msa0576890:CDS |
| TTTCACTTACCAAATCACAT+GGG | 0.690480 | 4_1:+81051313 | Msa0576890:three_prime_UTR |
| GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | 4_1:-81051165 | None:intergenic |
| ATGTCTAGGAATGAAGTATG+GGG | 0.697040 | 4_1:-81048710 | None:intergenic |
| TAACACACTCTAAACCACCC+TGG | 0.698750 | 4_1:-81050958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATATGAATTTTTAC+AGG | + | chr4_1:81049381-81049400 | Msa0576890:intron | 10.0% |
| !! | TAGACTATAGTAATTAATAA+TGG | + | chr4_1:81048869-81048888 | Msa0576890:exon | 15.0% |
| !! | AGACTATAGTAATTAATAAT+GGG | + | chr4_1:81048870-81048889 | Msa0576890:exon | 15.0% |
| !! | AAAAATAAAGATGAAGAAAA+GGG | - | chr4_1:81049593-81049612 | None:intergenic | 15.0% |
| !! | GAATATTAAAGTAATAACTA+AGG | - | chr4_1:81049891-81049910 | None:intergenic | 15.0% |
| !! | ATTAATTGTTTACAAAGTAA+TGG | + | chr4_1:81050799-81050818 | Msa0576890:CDS | 15.0% |
| !!! | ATTTGTTGATTTATTAGTTT+GGG | + | chr4_1:81051245-81051264 | Msa0576890:three_prime_UTR | 15.0% |
| !! | TAATAGAATTTGTAATTGTA+AGG | + | chr4_1:81051353-81051372 | Msa0576890:three_prime_UTR | 15.0% |
| !! | AGTACATAATTTCAAAGAAA+TGG | + | chr4_1:81049248-81049267 | Msa0576890:CDS | 20.0% |
| !! | AAAATAAAGATGAAGAAAAG+GGG | - | chr4_1:81049592-81049611 | None:intergenic | 20.0% |
| !! | GAAAAATAAAGATGAAGAAA+AGG | - | chr4_1:81049594-81049613 | None:intergenic | 20.0% |
| !! | AAAATAAATAATTGCTCTGA+TGG | - | chr4_1:81050035-81050054 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTTACTTTC+TGG | - | chr4_1:81050088-81050107 | None:intergenic | 20.0% |
| !! | TAGAATATTATATGACTATG+TGG | - | chr4_1:81050125-81050144 | None:intergenic | 20.0% |
| !! | TTCATTGATGAAATTTACAA+CGG | - | chr4_1:81050404-81050423 | None:intergenic | 20.0% |
| !! | TAAACAATTAATTCCAACTT+TGG | - | chr4_1:81050791-81050810 | None:intergenic | 20.0% |
| !!! | GATTTGTTGATTTATTAGTT+TGG | + | chr4_1:81051244-81051263 | Msa0576890:three_prime_UTR | 20.0% |
| !! | TAATTGTAAGGTTATTTGTT+TGG | + | chr4_1:81051365-81051384 | Msa0576890:three_prime_UTR | 20.0% |
| ! | TTAGTAGTCCAGATATAAAA+AGG | - | chr4_1:81048630-81048649 | None:intergenic | 25.0% |
| !!! | AATTTTTGGTTGGATGAAAA+GGG | - | chr4_1:81049001-81049020 | None:intergenic | 25.0% |
| ! | TAAAAATATACTGCATGGAT+AGG | - | chr4_1:81049123-81049142 | None:intergenic | 25.0% |
| !! | TCAAGTTTAAGATATGATGA+TGG | - | chr4_1:81049670-81049689 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGGTTTGTATAT+AGG | - | chr4_1:81050076-81050095 | None:intergenic | 25.0% |
| !! | TTTTTCATATGCATCTTCTA+AGG | - | chr4_1:81050290-81050309 | None:intergenic | 25.0% |
| ! | AATTGTTTACAAAGTAATGG+TGG | + | chr4_1:81050802-81050821 | Msa0576890:CDS | 25.0% |
| ! | ATTTGTGGTTCAGAATAATA+AGG | + | chr4_1:81051032-81051051 | Msa0576890:CDS | 25.0% |
| ! | ATGCTAAATAATTCAAGTAG+TGG | - | chr4_1:81051190-81051209 | None:intergenic | 25.0% |
| !! | AACAGAATACAGATATTTTC+TGG | - | chr4_1:81051397-81051416 | None:intergenic | 25.0% |
| ! | TTCTGTTACTCAAATTTGTA+AGG | + | chr4_1:81051410-81051429 | Msa0576890:three_prime_UTR | 25.0% |
| ! | TGAACCTTCCTTTTTATATC+TGG | + | chr4_1:81048619-81048638 | Msa0576890:five_prime_UTR | 30.0% |
| TAGTCCAGATATAAAAAGGA+AGG | - | chr4_1:81048626-81048645 | None:intergenic | 30.0% | |
| AATGTCTAGGAATGAAGTAT+GGG | - | chr4_1:81048714-81048733 | None:intergenic | 30.0% | |
| ! | AACAACAACAAAAAAGTACG+AGG | - | chr4_1:81048802-81048821 | None:intergenic | 30.0% |
| GAAACATCATCTTACTTTGA+TGG | + | chr4_1:81048954-81048973 | Msa0576890:CDS | 30.0% | |
| !!! | GAATTTTTGGTTGGATGAAA+AGG | - | chr4_1:81049002-81049021 | None:intergenic | 30.0% |
| ! | GATAACACCATCAGAATTTT+TGG | - | chr4_1:81049015-81049034 | None:intergenic | 30.0% |
| AGAGCTAAAAATATACTGCA+TGG | - | chr4_1:81049128-81049147 | None:intergenic | 30.0% | |
| ! | CAAAGAAATGGCTAATTTTC+AGG | + | chr4_1:81049260-81049279 | Msa0576890:CDS | 30.0% |
| !! | GCTAATTTTCAGGATTATCA+TGG | + | chr4_1:81049270-81049289 | Msa0576890:CDS | 30.0% |
| ! | ATATGAATTTTTACAGGCTG+TGG | + | chr4_1:81049387-81049406 | Msa0576890:intron | 30.0% |
| ! | AAATTCATGTCTAGAACAAG+AGG | + | chr4_1:81049412-81049431 | Msa0576890:CDS | 30.0% |
| TAATAACTAAGGCTGATTAG+TGG | - | chr4_1:81049880-81049899 | None:intergenic | 30.0% | |
| GAAGATAACATCAGAATCAA+AGG | + | chr4_1:81050316-81050335 | Msa0576890:CDS | 30.0% | |
| CGTATATTTCATCGCTTATT+AGG | - | chr4_1:81050438-81050457 | None:intergenic | 30.0% | |
| CAGATATGCTTATGAAACTT+GGG | - | chr4_1:81050480-81050499 | None:intergenic | 30.0% | |
| TCAGATATGCTTATGAAACT+TGG | - | chr4_1:81050481-81050500 | None:intergenic | 30.0% | |
| TTACAGTCTTTCAAAAGACA+TGG | + | chr4_1:81050555-81050574 | Msa0576890:CDS | 30.0% | |
| TACAGTCTTTCAAAAGACAT+GGG | + | chr4_1:81050556-81050575 | Msa0576890:CDS | 30.0% | |
| !! | TTATACCAACTCTAAAACCA+GGG | - | chr4_1:81050585-81050604 | None:intergenic | 30.0% |
| !! | ATTATACCAACTCTAAAACC+AGG | - | chr4_1:81050586-81050605 | None:intergenic | 30.0% |
| AGCTACATTTGAATCAGAAT+TGG | + | chr4_1:81050864-81050883 | Msa0576890:CDS | 30.0% | |
| TTGAATCAGAATTGGAACTT+TGG | + | chr4_1:81050872-81050891 | Msa0576890:CDS | 30.0% | |
| GTTAAGATTAATGTTTCACC+TGG | + | chr4_1:81050913-81050932 | Msa0576890:CDS | 30.0% | |
| ATGTGCAAATTGCTTTACAA+AGG | + | chr4_1:81051001-81051020 | Msa0576890:CDS | 30.0% | |
| ACAAAGGATTAGATCATTTG+TGG | + | chr4_1:81051017-81051036 | Msa0576890:CDS | 30.0% | |
| TCAGAATAATAAGGAGGTTA+TGG | + | chr4_1:81051041-81051060 | Msa0576890:CDS | 30.0% | |
| ATGTTGTGTTCCTTTAATGT+TGG | + | chr4_1:81051275-81051294 | Msa0576890:three_prime_UTR | 30.0% | |
| TGTTGTGTTCCTTTAATGTT+GGG | + | chr4_1:81051276-81051295 | Msa0576890:three_prime_UTR | 30.0% | |
| ! | TTTTCACTTACCAAATCACA+TGG | + | chr4_1:81051312-81051331 | Msa0576890:three_prime_UTR | 30.0% |
| TTTCACTTACCAAATCACAT+GGG | + | chr4_1:81051313-81051332 | Msa0576890:three_prime_UTR | 30.0% | |
| ! | ATTTGCTAGCTAGACTCTTA+CGG | + | chr4_1:81048577-81048596 | Msa0576890:five_prime_UTR | 35.0% |
| AAAAAGGAAGGTTCACATGA+AGG | - | chr4_1:81048614-81048633 | None:intergenic | 35.0% | |
| ATGTCTAGGAATGAAGTATG+GGG | - | chr4_1:81048713-81048732 | None:intergenic | 35.0% | |
| CAATGTCTAGGAATGAAGTA+TGG | - | chr4_1:81048715-81048734 | None:intergenic | 35.0% | |
| CATACTTCATTCCTAGACAT+TGG | + | chr4_1:81048713-81048732 | Msa0576890:five_prime_UTR | 35.0% | |
| AGTTAGAGATTCCAATGTCT+AGG | - | chr4_1:81048727-81048746 | None:intergenic | 35.0% | |
| TCTTAGACAACAATTGAGGT+TGG | - | chr4_1:81048911-81048930 | None:intergenic | 35.0% | |
| GCTATCTTAGACAACAATTG+AGG | - | chr4_1:81048915-81048934 | None:intergenic | 35.0% | |
| CATCATCTTACTTTGATGGA+TGG | + | chr4_1:81048958-81048977 | Msa0576890:CDS | 35.0% | |
| CATCCAACCAAAAATTCTGA+TGG | + | chr4_1:81049005-81049024 | Msa0576890:CDS | 35.0% | |
| !!! | ACACCATCAGAATTTTTGGT+TGG | - | chr4_1:81049011-81049030 | None:intergenic | 35.0% |
| !! | TTCTGATGGTGTTATCCAAA+TGG | + | chr4_1:81049019-81049038 | Msa0576890:CDS | 35.0% |
| !! | TCTGATGGTGTTATCCAAAT+GGG | + | chr4_1:81049020-81049039 | Msa0576890:CDS | 35.0% |
| CAGGTATATATCAAGCTTTG+AGG | + | chr4_1:81049056-81049075 | Msa0576890:intron | 35.0% | |
| !! | CTGCTGATTTGGTTCAAAAT+TGG | + | chr4_1:81049184-81049203 | Msa0576890:CDS | 35.0% |
| !! | TCCTTCTAGAGTACAAATTG+AGG | - | chr4_1:81049229-81049248 | None:intergenic | 35.0% |
| TGAATTGAATGTACATACCC+TGG | - | chr4_1:81049562-81049581 | None:intergenic | 35.0% | |
| TTTATAGTGCAATCAGCTAC+AGG | + | chr4_1:81049706-81049725 | Msa0576890:intron | 35.0% | |
| TCACTGCACTGTAAAGTAAA+CGG | + | chr4_1:81049785-81049804 | Msa0576890:intron | 35.0% | |
| !! | AGGTAAAACATTTTCAAGCG+CGG | + | chr4_1:81049809-81049828 | Msa0576890:intron | 35.0% |
| !!! | TGGAACTGACTTTTTCAACA+AGG | + | chr4_1:81049946-81049965 | Msa0576890:intron | 35.0% |
| !!! | GGAACTGACTTTTTCAACAA+GGG | + | chr4_1:81049947-81049966 | Msa0576890:intron | 35.0% |
| GCAGATTTGATAGAGATTTG+AGG | + | chr4_1:81050194-81050213 | Msa0576890:intron | 35.0% | |
| GATTTGATAGAGATTTGAGG+TGG | + | chr4_1:81050197-81050216 | Msa0576890:intron | 35.0% | |
| GATTCTGATGTTATCTTCTG+TGG | - | chr4_1:81050314-81050333 | None:intergenic | 35.0% | |
| ACAAATCCCTCAAATCCATT+AGG | + | chr4_1:81050349-81050368 | Msa0576890:CDS | 35.0% | |
| AAATCCATTAGGCACAGTTA+TGG | + | chr4_1:81050360-81050379 | Msa0576890:CDS | 35.0% | |
| ATATGCTTATGAAACTTGGG+TGG | - | chr4_1:81050477-81050496 | None:intergenic | 35.0% | |
| AAACTATGTGAACGAGGTTA+CGG | - | chr4_1:81050537-81050556 | None:intergenic | 35.0% | |
| AACACAGACACAATACTTGA+TGG | + | chr4_1:81050669-81050688 | Msa0576890:CDS | 35.0% | |
| ! | AGGTACAGAATTTTCACTAG+TGG | + | chr4_1:81050760-81050779 | Msa0576890:CDS | 35.0% |
| !! | ACTAGTGGATTAACCAAAGT+TGG | + | chr4_1:81050775-81050794 | Msa0576890:CDS | 35.0% |
| GAACAATGAAATGAAACACC+AGG | - | chr4_1:81050934-81050953 | None:intergenic | 35.0% | |
| TAGAGTGTGTTATGCTAACA+TGG | + | chr4_1:81050969-81050988 | Msa0576890:CDS | 35.0% | |
| TGTGGTTCAGAATAATAAGG+AGG | + | chr4_1:81051035-81051054 | Msa0576890:CDS | 35.0% | |
| TTGAGGTTAAGCCTTAAAAC+AGG | + | chr4_1:81051102-81051121 | Msa0576890:CDS | 35.0% | |
| ! | CATCAAACCTTCCTGTTTTA+AGG | - | chr4_1:81051116-81051135 | None:intergenic | 35.0% |
| GTTGTGTTCCTTTAATGTTG+GGG | + | chr4_1:81051277-81051296 | Msa0576890:three_prime_UTR | 35.0% | |
| TTGTGTTCCTTTAATGTTGG+GGG | + | chr4_1:81051278-81051297 | Msa0576890:three_prime_UTR | 35.0% | |
| AAAAATGCCCCCAACATTAA+AGG | - | chr4_1:81051288-81051307 | None:intergenic | 35.0% | |
| AGGAAGAAGCGAATTTGTGT+GGG | - | chr4_1:81048782-81048801 | None:intergenic | 40.0% | |
| ! | TTGTTGTCTAAGATAGCCAC+TGG | + | chr4_1:81048918-81048937 | Msa0576890:CDS | 40.0% |
| ! | TTTCCAGCTTACTGCTGATT+TGG | + | chr4_1:81049173-81049192 | Msa0576890:intron | 40.0% |
| GAGTACAAATTGAGGCTTCT+GGG | - | chr4_1:81049221-81049240 | None:intergenic | 40.0% | |
| AGAGTACAAATTGAGGCTTC+TGG | - | chr4_1:81049222-81049241 | None:intergenic | 40.0% | |
| GCCTCAATTTGTACTCTAGA+AGG | + | chr4_1:81049225-81049244 | Msa0576890:CDS | 40.0% | |
| !!! | AGATCCTGGTGATGCTTTTT+TGG | + | chr4_1:81049519-81049538 | Msa0576890:CDS | 40.0% |
| TGTACATACCCTGGATAGTA+AGG | - | chr4_1:81049553-81049572 | None:intergenic | 40.0% | |
| TCCATCAAAATTCACTACCC+TGG | - | chr4_1:81049930-81049949 | None:intergenic | 40.0% | |
| TTTGCACTTTCGCAGATAAC+TGG | - | chr4_1:81050244-81050263 | None:intergenic | 40.0% | |
| !! | ACTGTGCCTAATGGATTTGA+GGG | - | chr4_1:81050358-81050377 | None:intergenic | 40.0% |
| !! | AACTGTGCCTAATGGATTTG+AGG | - | chr4_1:81050359-81050378 | None:intergenic | 40.0% |
| CAACGGTTCTTAATGTGCTT+CGG | - | chr4_1:81050387-81050406 | None:intergenic | 40.0% | |
| CGATGAAATATACGCTGCAA+CGG | + | chr4_1:81050444-81050463 | Msa0576890:CDS | 40.0% | |
| GACTGTAAACTATGTGAACG+AGG | - | chr4_1:81050543-81050562 | None:intergenic | 40.0% | |
| TTTGCGCGCACAATTTACAA+CGG | - | chr4_1:81050626-81050645 | None:intergenic | 40.0% | |
| ! | TTCTTGCTGAAAGTGCAAAG+AGG | + | chr4_1:81050728-81050747 | Msa0576890:CDS | 40.0% |
| !!! | GTAATGGTGGACTTTTTGTG+TGG | + | chr4_1:81050815-81050834 | Msa0576890:CDS | 40.0% |
| ! | TTTGTGTGGATGGATTTGAG+AGG | + | chr4_1:81050829-81050848 | Msa0576890:CDS | 40.0% |
| GGATTTGAGAGGACTTCTTA+AGG | + | chr4_1:81050840-81050859 | Msa0576890:CDS | 40.0% | |
| ! | TCATTTCATTGTTCTGAGCC+AGG | + | chr4_1:81050940-81050959 | Msa0576890:CDS | 40.0% |
| ! | CATTTCATTGTTCTGAGCCA+GGG | + | chr4_1:81050941-81050960 | Msa0576890:CDS | 40.0% |
| AGAAGAACACTAAACCTTGC+TGG | + | chr4_1:81051070-81051089 | Msa0576890:CDS | 40.0% | |
| CTCAAATTACTATGCCAGCA+AGG | - | chr4_1:81051087-81051106 | None:intergenic | 40.0% | |
| CTTGCTGGCATAGTAATTTG+AGG | + | chr4_1:81051085-81051104 | Msa0576890:CDS | 40.0% | |
| GGTTAAGCCTTAAAACAGGA+AGG | + | chr4_1:81051106-81051125 | Msa0576890:CDS | 40.0% | |
| !! | CAAGTAGTGGCTTTAACAAG+AGG | - | chr4_1:81051177-81051196 | None:intergenic | 40.0% |
| TACCAAATCACATGGGTTTG+TGG | + | chr4_1:81051320-81051339 | Msa0576890:three_prime_UTR | 40.0% | |
| GAAGGTTCACATGAAGGTGA+TGG | - | chr4_1:81048608-81048627 | None:intergenic | 45.0% | |
| TCTAGGAATGAAGTATGGGG+TGG | - | chr4_1:81048710-81048729 | None:intergenic | 45.0% | |
| GAGGAAGAAGCGAATTTGTG+TGG | - | chr4_1:81048783-81048802 | None:intergenic | 45.0% | |
| ! | TCTAAGATAGCCACTGGTGA+TGG | + | chr4_1:81048924-81048943 | Msa0576890:CDS | 45.0% |
| GATTCTCTGCAAGACCCATT+TGG | - | chr4_1:81049037-81049056 | None:intergenic | 45.0% | |
| AATGGGTCTTGCAGAGAATC+AGG | + | chr4_1:81049037-81049056 | Msa0576890:CDS | 45.0% | |
| GAACCAAATCAGCAGTAAGC+TGG | - | chr4_1:81049179-81049198 | None:intergenic | 45.0% | |
| CCACTCACATTTCTGAACTC+TGG | - | chr4_1:81049300-81049319 | None:intergenic | 45.0% | |
| CCAGAGTTCAGAAATGTGAG+TGG | + | chr4_1:81049297-81049316 | Msa0576890:CDS | 45.0% | |
| CCACTCATCACAATACGATC+AGG | - | chr4_1:81049457-81049476 | None:intergenic | 45.0% | |
| CCTGATCGTATTGTGATGAG+TGG | + | chr4_1:81049454-81049473 | Msa0576890:CDS | 45.0% | |
| GATCGTATTGTGATGAGTGG+TGG | + | chr4_1:81049457-81049476 | Msa0576890:CDS | 45.0% | |
| ATCTGCCAAACAAAAGGCAG+TGG | - | chr4_1:81049503-81049522 | None:intergenic | 45.0% | |
| ACCAGGATCTGCCAAACAAA+AGG | - | chr4_1:81049509-81049528 | None:intergenic | 45.0% | |
| TGCCTACTCCTTACTATCCA+GGG | + | chr4_1:81049542-81049561 | Msa0576890:CDS | 45.0% | |
| TACCCTGGATAGTAAGGAGT+AGG | - | chr4_1:81049547-81049566 | None:intergenic | 45.0% | |
| TGCACTGTAAAGTAAACGGC+AGG | + | chr4_1:81049789-81049808 | Msa0576890:intron | 45.0% | |
| TCCAGTCATCATTAGAAGCC+AGG | + | chr4_1:81049909-81049928 | Msa0576890:intron | 45.0% | |
| CCAGTCATCATTAGAAGCCA+GGG | + | chr4_1:81049910-81049929 | Msa0576890:intron | 45.0% | |
| ! | GCCAGGGTAGTGAATTTTGA+TGG | + | chr4_1:81049926-81049945 | Msa0576890:intron | 45.0% |
| ! | AGAGATTTGAGGTGGAGAAC+AGG | + | chr4_1:81050205-81050224 | Msa0576890:CDS | 45.0% |
| TCAAAAGACATGGGATTCCC+TGG | + | chr4_1:81050565-81050584 | Msa0576890:CDS | 45.0% | |
| !!! | GGATTCCCTGGTTTTAGAGT+TGG | + | chr4_1:81050577-81050596 | Msa0576890:CDS | 45.0% |
| GTGCAAAGAGGTTAGCACAA+AGG | + | chr4_1:81050740-81050759 | Msa0576890:CDS | 45.0% | |
| !!! | TGGTGGACTTTTTGTGTGGA+TGG | + | chr4_1:81050819-81050838 | Msa0576890:CDS | 45.0% |
| TAACACACTCTAAACCACCC+TGG | - | chr4_1:81050961-81050980 | None:intergenic | 45.0% | |
| GACTGAGGAAATGGAGAATG+AGG | - | chr4_1:81051153-81051172 | None:intergenic | 45.0% | |
| ACAAGAGGTGACTGAGGAAA+TGG | - | chr4_1:81051162-81051181 | None:intergenic | 45.0% | |
| GCTTTAACAAGAGGTGACTG+AGG | - | chr4_1:81051168-81051187 | None:intergenic | 45.0% | |
| CACCACAAACCCATGTGATT+TGG | - | chr4_1:81051325-81051344 | None:intergenic | 45.0% | |
| !!! | TAATTGATAATATTTATAAT+TGG | - | chr4_1:81049616-81049635 | None:intergenic | 5.0% |
| !! | ATAGCCACTGGTGATGGACA+TGG | + | chr4_1:81048930-81048949 | Msa0576890:CDS | 50.0% |
| TTCACCATGTCCATCACCAG+TGG | - | chr4_1:81048937-81048956 | None:intergenic | 50.0% | |
| ! | TGAGGCCACTGCCTTTTGTT+TGG | + | chr4_1:81049495-81049514 | Msa0576890:CDS | 50.0% |
| !! | GCCTTTTGTTTGGCAGATCC+TGG | + | chr4_1:81049505-81049524 | Msa0576890:CDS | 50.0% |
| !! | GGCACCAAAAAAGCATCACC+AGG | - | chr4_1:81049526-81049545 | None:intergenic | 50.0% |
| GTGCCTACTCCTTACTATCC+AGG | + | chr4_1:81049541-81049560 | Msa0576890:CDS | 50.0% | |
| CCCTGGCTTCTAATGATGAC+TGG | - | chr4_1:81049913-81049932 | None:intergenic | 50.0% | |
| CGGTCCATAACTGTGCCTAA+TGG | - | chr4_1:81050367-81050386 | None:intergenic | 50.0% | |
| ! | GCGCGCAAAATGTCGAGTTT+TGG | + | chr4_1:81050637-81050656 | Msa0576890:CDS | 50.0% |
| ! | TTCATTGTTCTGAGCCAGGG+TGG | + | chr4_1:81050944-81050963 | Msa0576890:CDS | 50.0% |
| ! | GTGATGAGTGGTGGAGCAAC+TGG | + | chr4_1:81049466-81049485 | Msa0576890:CDS | 55.0% |
| TGGAGCAACTGGAGCACATG+AGG | + | chr4_1:81049477-81049496 | Msa0576890:CDS | 55.0% | |
| CAGTGCAGTGAGCTGCAAGT+CGG | - | chr4_1:81049776-81049795 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81048566 | 81051500 | 81048566 | ID=Msa0576890;Name=Msa0576890 |
| chr4_1 | mRNA | 81048566 | 81051500 | 81048566 | ID=Msa0576890-mRNA-1;Parent=Msa0576890;Name=Msa0576890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=322|0.2|0.5|1|1|1|6|303|503 |
| chr4_1 | exon | 81048566 | 81049058 | 81048566 | ID=Msa0576890-mRNA-1:exon:29136;Parent=Msa0576890-mRNA-1 |
| chr4_1 | exon | 81049180 | 81049347 | 81049180 | ID=Msa0576890-mRNA-1:exon:29137;Parent=Msa0576890-mRNA-1 |
| chr4_1 | exon | 81049403 | 81049563 | 81049403 | ID=Msa0576890-mRNA-1:exon:29138;Parent=Msa0576890-mRNA-1 |
| chr4_1 | exon | 81049650 | 81049655 | 81049650 | ID=Msa0576890-mRNA-1:exon:29139;Parent=Msa0576890-mRNA-1 |
| chr4_1 | exon | 81049722 | 81049727 | 81049722 | ID=Msa0576890-mRNA-1:exon:29140;Parent=Msa0576890-mRNA-1 |
| chr4_1 | exon | 81050198 | 81051500 | 81050198 | ID=Msa0576890-mRNA-1:exon:29141;Parent=Msa0576890-mRNA-1 |
| chr4_1 | five_prime_UTR | 81048566 | 81048887 | 81048566 | ID=Msa0576890-mRNA-1:five_prime_utr;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81048888 | 81049058 | 81048888 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81049180 | 81049347 | 81049180 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81049403 | 81049563 | 81049403 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81049650 | 81049655 | 81049650 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81049722 | 81049727 | 81049722 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | CDS | 81050198 | 81051197 | 81050198 | ID=Msa0576890-mRNA-1:cds;Parent=Msa0576890-mRNA-1 |
| chr4_1 | three_prime_UTR | 81051198 | 81051500 | 81051198 | ID=Msa0576890-mRNA-1:three_prime_utr;Parent=Msa0576890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
