AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0306780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306780 MtrunA17_Chr1g0202931 94.921 315 16 0 1 315 1 315 0.0 622
Msa0306780 MtrunA17_Chr1g0202891 89.841 315 32 0 1 315 1 315 0.0 582
Msa0306780 MtrunA17_Chr1g0202871 82.540 315 55 0 1 315 1 315 0.0 541
Msa0306780 MtrunA17_Chr1g0202861 79.048 315 66 0 1 315 42 356 0.0 530
Msa0306780 MtrunA17_Chr8g0386971 70.740 311 91 0 1 311 1 311 1.87e-165 462
Msa0306780 MtrunA17_Chr6g0470321 71.987 307 83 2 10 313 18 324 4.26e-158 444
Msa0306780 MtrunA17_Chr6g0470501 71.010 307 86 2 10 313 37 343 1.01e-157 444
Msa0306780 MtrunA17_Chr1g0182541 59.344 305 124 0 8 312 13 317 2.88e-132 379
Msa0306780 MtrunA17_Chr7g0262941 59.477 306 123 1 8 312 13 318 6.16e-131 375
Msa0306780 MtrunA17_Chr4g0058731 46.278 309 162 2 8 312 24 332 9.96e-89 269
Msa0306780 MtrunA17_Chr8g0388831 45.338 311 166 3 8 314 13 323 2.12e-88 268
Msa0306780 MtrunA17_Chr3g0117241 50.704 142 67 1 8 146 13 154 1.03e-40 139
Msa0306780 MtrunA17_Chr3g0117251 42.515 167 95 1 147 312 1 167 2.96e-40 139
Msa0306780 MtrunA17_Chr6g0481311 36.078 255 147 6 30 275 62 309 4.62e-31 120
Msa0306780 MtrunA17_Chr2g0317921 30.351 313 183 10 31 312 88 396 2.63e-28 112
Msa0306780 MtrunA17_Chr1g0202911 63.514 74 27 0 33 106 4 77 1.30e-26 100
Msa0306780 MtrunA17_Chr6g0466681 28.413 271 174 6 25 291 62 316 5.45e-25 102
Msa0306780 MtrunA17_Chr6g0469251 26.599 297 188 9 37 312 14 301 1.96e-15 75.5
Msa0306780 MtrunA17_Chr3g0079561 27.165 254 155 9 80 312 13 257 3.72e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306780 AT4G11410.1 69.841 315 95 0 1 315 1 315 1.05e-164 461
Msa0306780 AT4G23420.1 69.551 312 94 1 1 311 1 312 1.22e-163 458
Msa0306780 AT4G23420.2 69.551 312 94 1 1 311 1 312 1.22e-163 458
Msa0306780 AT4G23430.2 67.405 316 102 1 1 315 1 316 8.00e-163 456
Msa0306780 AT4G23420.3 68.710 310 96 1 3 311 20 329 3.22e-160 450
Msa0306780 AT4G23430.1 67.089 316 101 2 1 315 1 314 1.02e-159 448
Msa0306780 AT4G23430.4 64.557 316 101 2 1 315 1 306 8.27e-153 431
Msa0306780 AT4G23430.3 64.241 316 100 3 1 315 1 304 1.10e-149 422
Msa0306780 AT4G23420.5 69.847 262 78 1 1 261 1 262 4.81e-135 384
Msa0306780 AT4G23420.4 75.105 237 59 0 1 237 1 237 4.09e-133 379
Msa0306780 AT2G37540.1 56.678 307 133 0 6 312 10 316 3.26e-128 369
Msa0306780 AT4G11410.2 72.245 245 68 0 1 245 1 245 1.18e-127 365
Msa0306780 AT5G02540.1 58.958 307 126 0 6 312 10 316 1.17e-125 362
Msa0306780 AT2G37540.2 59.916 237 95 0 6 242 10 246 7.07e-103 302
Msa0306780 AT4G24050.1 45.484 310 166 2 8 314 13 322 8.92e-90 271
Msa0306780 AT5G50130.1 47.910 311 158 3 8 314 13 323 1.27e-89 271
Msa0306780 AT5G50130.8 47.350 283 148 1 33 314 7 289 1.39e-82 252
Msa0306780 AT5G50130.7 47.535 284 147 2 33 314 7 290 3.23e-82 251
Msa0306780 AT1G64590.1 45.763 295 157 2 17 308 22 316 2.19e-78 242
Msa0306780 AT5G50130.2 47.547 265 135 3 8 268 13 277 7.76e-75 233
Msa0306780 AT5G50130.4 47.744 266 134 4 8 268 13 278 2.77e-74 231
Msa0306780 AT4G24050.2 45.833 264 138 3 8 268 13 274 1.13e-73 228
Msa0306780 AT5G50130.9 49.796 245 120 2 8 249 13 257 1.36e-73 228
Msa0306780 AT5G50130.3 50.000 246 119 3 8 249 13 258 4.42e-73 226
Msa0306780 AT5G50130.6 47.059 238 124 2 33 268 7 244 1.64e-67 213
Msa0306780 AT5G50130.5 47.280 239 123 3 33 268 7 245 5.60e-67 212
Msa0306780 AT5G54190.1 29.582 311 184 10 33 312 96 402 4.26e-31 120
Msa0306780 AT4G27760.1 30.164 305 180 7 30 312 58 351 5.19e-31 120
Msa0306780 AT1G03630.1 33.013 312 175 11 31 312 91 398 5.41e-31 120
Msa0306780 AT1G03630.2 33.013 312 175 11 31 312 89 396 5.70e-31 120
Msa0306780 AT5G53090.1 31.561 301 181 6 30 312 57 350 2.84e-29 115
Msa0306780 AT4G27440.2 29.942 344 202 12 4 312 59 398 1.90e-27 110
Msa0306780 AT4G27440.1 29.942 344 202 12 4 312 59 398 1.90e-27 110
Msa0306780 AT4G09750.1 29.588 267 168 6 29 291 43 293 5.39e-27 108
Msa0306780 AT5G53100.1 30.592 304 183 8 30 312 45 341 6.90e-27 108
Msa0306780 AT5G54190.2 27.622 286 171 10 58 312 1 281 1.31e-23 98.6
Msa0306780 AT5G04070.1 28.477 302 188 8 32 314 61 353 1.51e-22 96.7
Msa0306780 AT5G15940.1 28.197 305 187 11 32 314 62 356 8.26e-22 94.7
Msa0306780 AT5G15940.3 28.197 305 187 11 32 314 63 357 8.43e-22 94.7
Msa0306780 AT5G15940.2 28.197 305 187 11 32 314 63 357 8.43e-22 94.7
Msa0306780 AT5G15940.4 29.075 227 136 7 32 241 63 281 1.18e-16 79.7
Msa0306780 AT3G59710.3 29.710 276 149 11 31 272 20 284 1.41e-12 67.4
Msa0306780 AT3G59710.1 29.496 278 151 11 31 274 30 296 2.09e-12 67.0
Msa0306780 AT3G59710.2 29.710 276 149 11 31 272 49 313 2.28e-12 67.0
Msa0306780 AT5G61830.1 24.490 294 160 9 32 285 39 310 9.61e-12 65.1
Msa0306780 AT5G61830.2 24.490 294 160 9 32 285 39 310 9.61e-12 65.1

Find 139 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCCTTAATTTACTTTC+TGG 0.188746 2_3:-65902834 None:intergenic
CAATGAAAACATAAAGTTTA+AGG 0.192623 2_3:-65902426 None:intergenic
CATTGGAATGCGTTCTTATC+AGG 0.206730 2_3:+65903042 Msa0306780:five_prime_UTR
TTCAGGAAGAAAGGGATTTC+TGG 0.209019 2_3:+65903339 Msa0306780:CDS
AGCATAGTGGTTCTTATAAA+AGG 0.221115 2_3:+65902698 Msa0306780:five_prime_UTR
CCTTCCCTGTGATTCTCTTT+TGG 0.235273 2_3:-65907053 None:intergenic
TTTCAGCATGAATTTGATTA+AGG 0.259296 2_3:+65907105 Msa0306780:CDS
TCAATTTCTTGTTCTTCTTT+TGG 0.274467 2_3:-65902142 None:intergenic
GGCTTACACATTTGCATATT+CGG 0.280798 2_3:+65905292 Msa0306780:CDS
ACAGGAACAAAAGCTCTTAT+TGG 0.282027 2_3:-65902604 None:intergenic
TCAAGCCAGAAAGTAAATTA+AGG 0.283081 2_3:+65902829 Msa0306780:five_prime_UTR
CTGTAGTTCAATGTTGTCTT+TGG 0.287889 2_3:-65904635 None:intergenic
TTACCATCATGTGGCCATTC+AGG 0.289613 2_3:+65903322 Msa0306780:exon
ATTACAAATCCAAAATCTTC+AGG 0.292734 2_3:-65902310 None:intergenic
CACTAATTCCCTTCACTTGT+GGG 0.304068 2_3:-65907003 None:intergenic
GCGTGGTGTCCATGTGATTA+TGG 0.305515 2_3:+65903814 Msa0306780:CDS
AGCACTTGCTGTGGCTAATA+TGG 0.317291 2_3:+65902735 Msa0306780:five_prime_UTR
CTATTGGTTATTACCTTGAT+TGG 0.330943 2_3:-65905343 None:intergenic
CACCAATCTTTCCCGCCATA+TGG 0.337645 2_3:+65906046 Msa0306780:CDS
CTGATTTGGCTAAGAAACTT+TGG 0.344972 2_3:+65907080 Msa0306780:CDS
GATTATGGCTGTTAGAAATA+TGG 0.346372 2_3:+65903829 Msa0306780:CDS
ACAGGGAAGGGACGCTGATT+TGG 0.349751 2_3:+65907066 Msa0306780:CDS
AAAGGGATTTCTGGATTCTC+AGG 0.351168 2_3:+65903348 Msa0306780:CDS
TTCCTGTTCTTTATAATTCA+AGG 0.354426 2_3:+65902620 Msa0306780:five_prime_UTR
GAAATACACAAATTTGTATA+TGG 0.359155 2_3:+65902995 Msa0306780:five_prime_UTR
GGAAGAATTGTTAATGTCTC+TGG 0.379542 2_3:+65905266 Msa0306780:CDS
ATGGTTAGCCCTGAAGATTT+TGG 0.385009 2_3:+65902301 Msa0306780:five_prime_UTR
GATCAGGATATTTATGAGAT+TGG 0.390575 2_3:-65902046 None:intergenic
ACCCATATGGCGGGAAAGAT+TGG 0.391956 2_3:-65906048 None:intergenic
TGATTTGGCTAAGAAACTTT+GGG 0.394235 2_3:+65907081 Msa0306780:CDS
CAGCTAAACAATTGAGTTGT+CGG 0.396906 2_3:-65902252 None:intergenic
CTCCTTGAATTATAAAGAAC+AGG 0.405168 2_3:-65902622 None:intergenic
ACAGGAGCAACCAGTGGTAT+TGG 0.407904 2_3:+65903764 Msa0306780:intron
CCACTAATTCCCTTCACTTG+TGG 0.410260 2_3:-65907004 None:intergenic
TACAACAAACAGAGTGCATA+TGG 0.418172 2_3:+65905832 Msa0306780:CDS
TATTTGAATGATGACATCAT+TGG 0.424697 2_3:+65903124 Msa0306780:five_prime_UTR
AGTAATTAAATAAATTTGAC+AGG 0.425043 2_3:+65902971 Msa0306780:five_prime_UTR
AAGGACAAATGGTTGGTAAA+GGG 0.425534 2_3:-65901968 None:intergenic
TGGAATATTTGAAGGTGATA+AGG 0.427078 2_3:+65902492 Msa0306780:five_prime_UTR
ACAGGTATAATACAGGTGAT+TGG 0.428022 2_3:+65906739 Msa0306780:intron
CAGGTATAATACAGGTGATT+GGG 0.437343 2_3:+65906740 Msa0306780:intron
AAGTAAATTAAGGAATGATT+AGG 0.437346 2_3:+65902839 Msa0306780:five_prime_UTR
TCTGGTGGAGTTGGACCAAC+TGG 0.442420 2_3:+65902103 Msa0306780:five_prime_UTR
ACAAAATTAATGACCAATCA+AGG 0.448930 2_3:+65905330 Msa0306780:CDS
TTACATCTTGATCAGGATGA+TGG 0.449048 2_3:+65905981 Msa0306780:intron
TGAGAGGGAGTAGAAAGATA+AGG 0.451151 2_3:-65902017 None:intergenic
AGGAATGATTAGGTAGCTAT+AGG 0.452350 2_3:+65902849 Msa0306780:five_prime_UTR
AAAACTCTAGGAAGATAAAC+AGG 0.453140 2_3:-65902793 None:intergenic
GAAATCCCTTTCTTCCTGAA+TGG 0.455018 2_3:-65903336 None:intergenic
TTGAACCATGACTTCTCTGC+TGG 0.457636 2_3:+65902928 Msa0306780:five_prime_UTR
TATCAAAGCAGCAATACTTA+AGG 0.461173 2_3:+65903865 Msa0306780:CDS
CCACATACCTAAGTGGTTTG+TGG 0.461540 2_3:-65904662 None:intergenic
GAGGCGTCTTGCAAGCTCAT+TGG 0.461840 2_3:-65905884 None:intergenic
AGATGATGGGGTTGAAATGA+AGG 0.462247 2_3:-65901987 None:intergenic
AAGACCAGAGGAGTTGAATT+CGG 0.463073 2_3:-65903960 None:intergenic
CCATGTAAAATATATGCTAT+AGG 0.465903 2_3:-65902472 None:intergenic
TGGTAAAGGGGTAAGGTTCG+TGG 0.466371 2_3:-65901955 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 2_3:-65906032 None:intergenic
CCACAAGTGAAGGGAATTAG+TGG 0.477838 2_3:+65907004 Msa0306780:CDS
TAACAAGAGAATTTGTGATC+AGG 0.480171 2_3:-65902062 None:intergenic
ACTCATGGAATTGATGCAAC+TGG 0.480827 2_3:+65903393 Msa0306780:CDS
GCATCCGAATTCAACTCCTC+TGG 0.483856 2_3:+65903956 Msa0306780:CDS
GGAGTTAGATCTCAGTTCAA+TGG 0.492329 2_3:+65903916 Msa0306780:CDS
ATGTGGCCATTCAGGAAGAA+AGG 0.492857 2_3:+65903330 Msa0306780:CDS
TTGTCTTTGGACAGCATGAA+AGG 0.496194 2_3:-65904622 None:intergenic
ACTATGCTCTTCACCAACCT+TGG 0.496587 2_3:-65902683 None:intergenic
TTACAAATCCAAAATCTTCA+GGG 0.499930 2_3:-65902309 None:intergenic
GAAGGACAAATGGTTGGTAA+AGG 0.500940 2_3:-65901969 None:intergenic
CAGTTTGCCACAAACCACTT+AGG 0.502711 2_3:+65904655 Msa0306780:CDS
TCTTATAAAAGGATTTATGC+TGG 0.505951 2_3:+65902709 Msa0306780:five_prime_UTR
GAGTTCCAAGCCTAGAGATT+CGG 0.506605 2_3:-65901871 None:intergenic
ACCAATCTTTCCCGCCATAT+GGG 0.511754 2_3:+65906047 Msa0306780:CDS
TTCAATTCTTATACAACACT+TGG 0.513169 2_3:-65907141 None:intergenic
CAGCATGAATTTGATTAAGG+AGG 0.517327 2_3:+65907108 Msa0306780:CDS
GATAAGGTTAGATCAGATGA+TGG 0.519617 2_3:-65902001 None:intergenic
CTTCCTGAATGGCCACATGA+TGG 0.519739 2_3:-65903325 None:intergenic
GGCGCAAACCATTGGAGACG+TGG 0.520870 2_3:-65907295 None:intergenic
TGTGGCCAAAAGAGAATCAC+AGG 0.523542 2_3:+65907048 Msa0306780:CDS
GGTCTCACTGCTATTGTCAC+TGG 0.523841 2_3:+65903414 Msa0306780:CDS
AGGACAAATGGTTGGTAAAG+GGG 0.524435 2_3:-65901967 None:intergenic
TACCGTGGATTACACCCATA+TGG 0.529890 2_3:-65906061 None:intergenic
AATTGAGTTGTCGGAATGAG+AGG 0.532641 2_3:-65902243 None:intergenic
TACACATTTGCATATTCGGA+AGG 0.534970 2_3:+65905296 Msa0306780:CDS
TGACACCGAATCTCTAGGCT+TGG 0.535666 2_3:+65901866 None:intergenic
AAATGGTTGGTAAAGGGGTA+AGG 0.536543 2_3:-65901962 None:intergenic
CTCAGCTAAAATTGACGTCA+TGG 0.538413 2_3:+65903895 Msa0306780:CDS
TGTGGCCATTCAGGAAGAAA+GGG 0.539455 2_3:+65903331 Msa0306780:CDS
TTCAGGGCTAACCATGCCAC+TGG 0.540431 2_3:-65902293 None:intergenic
ATAAGGTTAGATCAGATGAT+GGG 0.543984 2_3:-65902000 None:intergenic
TTATGCAACAGGTATAATAC+AGG 0.545042 2_3:+65906732 Msa0306780:intron
CGCCATATGGGTGTAATCCA+CGG 0.545789 2_3:+65906059 Msa0306780:CDS
AGAGATGAGATTTCCAAGGT+TGG 0.547974 2_3:+65902670 Msa0306780:five_prime_UTR
AAAGTCAATAGTGCAGATCA+TGG 0.548372 2_3:-65903267 None:intergenic
AGCATTGCACCCACAAGTGA+AGG 0.549189 2_3:+65906994 Msa0306780:CDS
AATAACCAGCAGAGAAGTCA+TGG 0.550286 2_3:-65902933 None:intergenic
ACTGCTGAACAAGTTACTCA+TGG 0.551436 2_3:+65903378 Msa0306780:CDS
GGGTTGAAATGAAGGACAAA+TGG 0.551751 2_3:-65901979 None:intergenic
TGTCTTTGGACAGCATGAAA+GGG 0.554321 2_3:-65904621 None:intergenic
GCACACGAAAGTAAGAAAGA+AGG 0.557161 2_3:+65905245 Msa0306780:CDS
GTAATTGCAAGAAACAATGC+AGG 0.558972 2_3:+65904586 Msa0306780:intron
TAGTGTGACACCGAATCTCT+AGG 0.559804 2_3:+65901861 None:intergenic
TACATCTTGATCAGGATGAT+GGG 0.560641 2_3:+65905982 Msa0306780:intron
ACTGTGAATTCTCTTCATCC+AGG 0.561741 2_3:+65906014 Msa0306780:CDS
TGAGCTTGCAAGACGCCTCA+AGG 0.563477 2_3:+65905888 Msa0306780:CDS
CAATGCTACATAGCAGGTTG+TGG 0.563645 2_3:-65906978 None:intergenic
TGTCTTATCAGCCAGTGGCA+TGG 0.570622 2_3:+65902282 Msa0306780:five_prime_UTR
ATATTGCCCACATACCTAAG+TGG 0.571755 2_3:-65904669 None:intergenic
GTGGATTACACCCATATGGC+GGG 0.577534 2_3:-65906057 None:intergenic
CAAAAGAGAATCACAGGGAA+GGG 0.585563 2_3:+65907054 Msa0306780:CDS
AAGGGATTTCTGGATTCTCA+GGG 0.585889 2_3:+65903349 Msa0306780:CDS
GTTTAGAGATGAGATTTCCA+AGG 0.593748 2_3:+65902666 Msa0306780:five_prime_UTR
TGAAATGAAGGACAAATGGT+TGG 0.594185 2_3:-65901975 None:intergenic
GTTGTTGTCTTATCAGCCAG+TGG 0.595119 2_3:+65902277 Msa0306780:five_prime_UTR
TCTTACATCAAGATGTTCAA+CGG 0.596176 2_3:-65903983 None:intergenic
TGGGTGCAATGCTACATAGC+AGG 0.602362 2_3:-65906984 None:intergenic
AGTCTCAACTCCAATACCAC+TGG 0.604354 2_3:-65903774 None:intergenic
GCGCAAACCATTGGAGACGT+GGG 0.606770 2_3:-65907294 None:intergenic
AATTGTTAATGTCTCTGGAG+AGG 0.607553 2_3:+65905271 Msa0306780:CDS
AGGCTAATGTCACAGCCAGT+TGG 0.608232 2_3:-65902118 None:intergenic
ATTGACTTTGTGAATTGTGA+CGG 0.611694 2_3:+65903281 Msa0306780:five_prime_UTR
TGCTGGAAGAGCACTTGCTG+TGG 0.614632 2_3:+65902726 Msa0306780:five_prime_UTR
CCAAAAGAGAATCACAGGGA+AGG 0.615970 2_3:+65907053 Msa0306780:CDS
ATATTTGAAGGTGATAAGGA+AGG 0.616957 2_3:+65902496 Msa0306780:five_prime_UTR
ACGCGTGTTCTTGCTTTGCG+TGG 0.623338 2_3:+65903797 Msa0306780:CDS
GCATTGCACCCACAAGTGAA+GGG 0.624705 2_3:+65906995 Msa0306780:CDS
TCTTGATCAGGATGATGGGG+TGG 0.624894 2_3:+65905986 Msa0306780:intron
CGTGGATTACACCCATATGG+CGG 0.632054 2_3:-65906058 None:intergenic
GTAATTAAATAAATTTGACA+GGG 0.633762 2_3:+65902972 Msa0306780:five_prime_UTR
TAAGGTTAGATCAGATGATG+GGG 0.648906 2_3:-65901999 None:intergenic
TTCTAACAGCCATAATCACA+TGG 0.652025 2_3:-65903823 None:intergenic
TAATTAAATAAATTTGACAG+GGG 0.658021 2_3:+65902973 Msa0306780:five_prime_UTR
GATGTTCAACGGAAGACCAG+AGG 0.668187 2_3:-65903972 None:intergenic
AAGGTTGGTGAAGAGCATAG+TGG 0.672560 2_3:+65902685 Msa0306780:five_prime_UTR
CTGTTCTTTATAATTCAAGG+AGG 0.674362 2_3:+65902623 Msa0306780:five_prime_UTR
ACATCTTGATCAGGATGATG+GGG 0.677424 2_3:+65905983 Msa0306780:intron
AACATAGTGACATAATAACA+TGG 0.690821 2_3:+65903091 Msa0306780:five_prime_UTR
ATGGTAACAGGAGCAACCAG+TGG 0.692173 2_3:+65903758 Msa0306780:intron
TATGTTGAAGATGAGATGTG+TGG 0.706621 2_3:-65903074 None:intergenic
GTGGCCAAAAGAGAATCACA+GGG 0.746378 2_3:+65907049 Msa0306780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTATATATGATTT+AGG - chr2_3:65903191-65903210 None:intergenic 10.0%
!! AGATATTATAACAATTATTA+TGG - chr2_3:65904150-65904169 None:intergenic 10.0%
!! TCAAATAAATAGTAAATAAA+AGG - chr2_3:65904434-65904453 None:intergenic 10.0%
!! TAAAAATAATTGTAAAATGA+TGG - chr2_3:65904855-65904874 None:intergenic 10.0%
!!! TTTTGTATTTTGTTTTTAAA+TGG + chr2_3:65905403-65905422 Msa0306780:intron 10.0%
!!! TTATTTTGATGATTTGTATA+AGG + chr2_3:65902903-65902922 Msa0306780:five_prime_UTR 15.0%
!! AGTAATTAAATAAATTTGAC+AGG + chr2_3:65902971-65902990 Msa0306780:five_prime_UTR 15.0%
!! GTAATTAAATAAATTTGACA+GGG + chr2_3:65902972-65902991 Msa0306780:five_prime_UTR 15.0%
!! TAATTAAATAAATTTGACAG+GGG + chr2_3:65902973-65902992 Msa0306780:five_prime_UTR 15.0%
!!! ATTTTATATATGATTTAGGT+GGG - chr2_3:65903187-65903206 None:intergenic 15.0%
!!! AATTTTATATATGATTTAGG+TGG - chr2_3:65903188-65903207 None:intergenic 15.0%
!! ATAATCTTGAAGTTAAATTA+TGG - chr2_3:65903632-65903651 None:intergenic 15.0%
!! AAATTATTATATGGATATGA+TGG + chr2_3:65903734-65903753 Msa0306780:intron 15.0%
!! AAAACTTTAAATTAAGTTAG+AGG - chr2_3:65904067-65904086 None:intergenic 15.0%
!!! AATGCAATTTACTTTTTAAA+TGG - chr2_3:65904096-65904115 None:intergenic 15.0%
!! GAAACTTTAAATTAAGTTAA+CGG + chr2_3:65904391-65904410 Msa0306780:intron 15.0%
!!! TTTTTAAATTACAGTTACAA+AGG + chr2_3:65904869-65904888 Msa0306780:intron 15.0%
!!! TTTTAAATTACAGTTACAAA+GGG + chr2_3:65904870-65904889 Msa0306780:intron 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG + chr2_3:65905474-65905493 Msa0306780:intron 15.0%
!!! AACTTCAATTTTATTTTCTT+GGG + chr2_3:65905475-65905494 Msa0306780:intron 15.0%
!! TACGAGTAAATAAATAATTA+CGG - chr2_3:65906277-65906296 None:intergenic 15.0%
!!! TTTATCTGATTATTTTGAAT+TGG + chr2_3:65906572-65906591 Msa0306780:intron 15.0%
!!! TTATCTGATTATTTTGAATT+GGG + chr2_3:65906573-65906592 Msa0306780:intron 15.0%
!! TTGTTATAAACGTTTATTAA+GGG + chr2_3:65906853-65906872 Msa0306780:intron 15.0%
!! CAATGAAAACATAAAGTTTA+AGG - chr2_3:65902429-65902448 None:intergenic 20.0%
!!! CTTAAACTTTATGTTTTCAT+TGG + chr2_3:65902427-65902446 Msa0306780:five_prime_UTR 20.0%
!!! ATTTTACATGGAATATTTGA+AGG + chr2_3:65902484-65902503 Msa0306780:five_prime_UTR 20.0%
!! AAGTAAATTAAGGAATGATT+AGG + chr2_3:65902839-65902858 Msa0306780:five_prime_UTR 20.0%
!! GAAATACACAAATTTGTATA+TGG + chr2_3:65902995-65903014 Msa0306780:five_prime_UTR 20.0%
!! TAAAACTACTATTCAACAAA+GGG - chr2_3:65903496-65903515 None:intergenic 20.0%
!! ATAAAACTACTATTCAACAA+AGG - chr2_3:65903497-65903516 None:intergenic 20.0%
!! CTACATATATTCATACATAA+AGG - chr2_3:65903546-65903565 None:intergenic 20.0%
!! GGCTATGAAAAATTATTATA+TGG + chr2_3:65903725-65903744 Msa0306780:intron 20.0%
!! TTGAACATTGTAAAGATAAA+GGG + chr2_3:65904331-65904350 Msa0306780:intron 20.0%
!! GAATCAAATGAATAAAAACT+CGG - chr2_3:65904718-65904737 None:intergenic 20.0%
!! TCTAATAAAATGAAGAGAAA+AGG + chr2_3:65904778-65904797 Msa0306780:intron 20.0%
!!! ATTTTGTTTTTAAATGGAAG+AGG + chr2_3:65905409-65905428 Msa0306780:intron 20.0%
!!! ATTTTATTTTCTTGGGAAAT+CGG + chr2_3:65905482-65905501 Msa0306780:intron 20.0%
!! ATAGTACTCAATATGTATTT+CGG + chr2_3:65905535-65905554 Msa0306780:intron 20.0%
!! TAAATAATTACGGGTATAAT+AGG - chr2_3:65906267-65906286 None:intergenic 20.0%
!! ACGAGTAAATAAATAATTAC+GGG - chr2_3:65906276-65906295 None:intergenic 20.0%
!!! TAGAAAACAAACACATTTTA+TGG - chr2_3:65906657-65906676 None:intergenic 20.0%
!! GTTGTTATAAACGTTTATTA+AGG + chr2_3:65906852-65906871 Msa0306780:intron 20.0%
! GTCCTAACTAAAAATAACAT+AGG + chr2_3:65901919-65901938 Msa0306780:five_prime_UTR 25.0%
!!! CACCTATGTTATTTTTAGTT+AGG - chr2_3:65901924-65901943 None:intergenic 25.0%
!! TCAATTTCTTGTTCTTCTTT+TGG - chr2_3:65902145-65902164 None:intergenic 25.0%
! TTACAAATCCAAAATCTTCA+GGG - chr2_3:65902312-65902331 None:intergenic 25.0%
! ATTACAAATCCAAAATCTTC+AGG - chr2_3:65902313-65902332 None:intergenic 25.0%
!! AAATAGGTTGTTCTTTTGAA+GGG - chr2_3:65902387-65902406 None:intergenic 25.0%
!! AAAATAGGTTGTTCTTTTGA+AGG - chr2_3:65902388-65902407 None:intergenic 25.0%
!!! TTGTTTTGTTGAGTGAAAAT+AGG - chr2_3:65902403-65902422 None:intergenic 25.0%
! CCATGTAAAATATATGCTAT+AGG - chr2_3:65902475-65902494 None:intergenic 25.0%
!! CCTATAGCATATATTTTACA+TGG + chr2_3:65902472-65902491 Msa0306780:five_prime_UTR 25.0%
! TTCCTGTTCTTTATAATTCA+AGG + chr2_3:65902620-65902639 Msa0306780:five_prime_UTR 25.0%
! TCTTATAAAAGGATTTATGC+TGG + chr2_3:65902709-65902728 Msa0306780:five_prime_UTR 25.0%
!!! TTTTGGTGCTTTAATTTGTT+TGG + chr2_3:65902760-65902779 Msa0306780:five_prime_UTR 25.0%
!!! TAATACGCTTTAAAAACTCT+AGG - chr2_3:65902808-65902827 None:intergenic 25.0%
! TCATTCCTTAATTTACTTTC+TGG - chr2_3:65902837-65902856 None:intergenic 25.0%
!! AATATGCATACGTTTTACAT+TGG + chr2_3:65903025-65903044 Msa0306780:five_prime_UTR 25.0%
! AACATAGTGACATAATAACA+TGG + chr2_3:65903091-65903110 Msa0306780:five_prime_UTR 25.0%
! TATTTGAATGATGACATCAT+TGG + chr2_3:65903124-65903143 Msa0306780:five_prime_UTR 25.0%
!! TTTTTAACGATCTTTGTAGT+TGG + chr2_3:65903604-65903623 Msa0306780:intron 25.0%
! GTTGAACATTGTAAAGATAA+AGG + chr2_3:65904330-65904349 Msa0306780:intron 25.0%
! GTAAAATGATGGTATTTCAT+TGG - chr2_3:65904844-65904863 None:intergenic 25.0%
!!! GAAACATTACGAGTTTTAAT+TGG + chr2_3:65904903-65904922 Msa0306780:intron 25.0%
!!! TACGAGTTTTAATTGGAATT+TGG + chr2_3:65904910-65904929 Msa0306780:intron 25.0%
! GAATTCATCTTAGAGTTTAA+TGG - chr2_3:65904974-65904993 None:intergenic 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG - chr2_3:65905325-65905344 None:intergenic 25.0%
! ACAAAATTAATGACCAATCA+AGG + chr2_3:65905330-65905349 Msa0306780:CDS 25.0%
!! TTGGTATCAAAACTTTTATC+TGG - chr2_3:65905586-65905605 None:intergenic 25.0%
!! ATATCATATTAGCAGGTTTT+TGG - chr2_3:65905605-65905624 None:intergenic 25.0%
! CTAATATGATATTGATCACA+TGG + chr2_3:65905613-65905632 Msa0306780:intron 25.0%
!! TTTGTTGTAACTGTATTACA+AGG - chr2_3:65905821-65905840 None:intergenic 25.0%
!!! TTTGTTTTTGTGTGTAAAAC+TGG + chr2_3:65905925-65905944 Msa0306780:intron 25.0%
! TCATTCATCTACATTACTAT+AGG + chr2_3:65906229-65906248 Msa0306780:intron 25.0%
! ACTACAGCATAAAAAAACAT+AGG - chr2_3:65906406-65906425 None:intergenic 25.0%
! AGTAATAATGTATGAATGAG+TGG - chr2_3:65906543-65906562 None:intergenic 25.0%
!! TTATGTTTGATTTATGCAAC+AGG + chr2_3:65906721-65906740 Msa0306780:intron 25.0%
! ACCTATGATTTATAAATGTG+AGG + chr2_3:65906809-65906828 Msa0306780:intron 25.0%
! CCTATGATTTATAAATGTGA+GGG + chr2_3:65906810-65906829 Msa0306780:intron 25.0%
! TCTAATCTGTGTTTCTTTAT+TGG - chr2_3:65906880-65906899 None:intergenic 25.0%
! TTTCAGCATGAATTTGATTA+AGG + chr2_3:65907105-65907124 Msa0306780:CDS 25.0%
! TTCAATTCTTATACAACACT+TGG - chr2_3:65907144-65907163 None:intergenic 25.0%
ATAAGGTTAGATCAGATGAT+GGG - chr2_3:65902003-65902022 None:intergenic 30.0%
!!! TGAGATTGGTTTTTTTGAGA+GGG - chr2_3:65902035-65902054 None:intergenic 30.0%
!!! ATGAGATTGGTTTTTTTGAG+AGG - chr2_3:65902036-65902055 None:intergenic 30.0%
GATCAGGATATTTATGAGAT+TGG - chr2_3:65902049-65902068 None:intergenic 30.0%
TAACAAGAGAATTTGTGATC+AGG - chr2_3:65902065-65902084 None:intergenic 30.0%
! TTTCTTGTTCTTCTTTTGGT+AGG - chr2_3:65902141-65902160 None:intergenic 30.0%
!!! AGGAAACTAGTTTTTCTTTG+TGG - chr2_3:65902226-65902245 None:intergenic 30.0%
TGGAATATTTGAAGGTGATA+AGG + chr2_3:65902492-65902511 Msa0306780:five_prime_UTR 30.0%
ATATTTGAAGGTGATAAGGA+AGG + chr2_3:65902496-65902515 Msa0306780:five_prime_UTR 30.0%
! TACACCACATGTTTTTCTTT+TGG + chr2_3:65902531-65902550 Msa0306780:five_prime_UTR 30.0%
!! TTTGGCTAGTCAAGTTTTTA+TGG + chr2_3:65902549-65902568 Msa0306780:five_prime_UTR 30.0%
CTCCTTGAATTATAAAGAAC+AGG - chr2_3:65902625-65902644 None:intergenic 30.0%
CTGTTCTTTATAATTCAAGG+AGG + chr2_3:65902623-65902642 Msa0306780:five_prime_UTR 30.0%
AGCATAGTGGTTCTTATAAA+AGG + chr2_3:65902698-65902717 Msa0306780:five_prime_UTR 30.0%
! AAAACTCTAGGAAGATAAAC+AGG - chr2_3:65902796-65902815 None:intergenic 30.0%
TCAAGCCAGAAAGTAAATTA+AGG + chr2_3:65902829-65902848 Msa0306780:five_prime_UTR 30.0%
! ATTGACTTTGTGAATTGTGA+CGG + chr2_3:65903281-65903300 Msa0306780:five_prime_UTR 30.0%
! GATTTTTCATTACCATCATG+TGG + chr2_3:65903313-65903332 Msa0306780:exon 30.0%
!! AGTTTTATGTTGCAGAGTTA+TGG + chr2_3:65903509-65903528 Msa0306780:intron 30.0%
! GTTTTATGTTGCAGAGTTAT+GGG + chr2_3:65903510-65903529 Msa0306780:intron 30.0%
! TTTTATGTTGCAGAGTTATG+GGG + chr2_3:65903511-65903530 Msa0306780:intron 30.0%
! CTTTTCATCATTTAGACTTG+AGG + chr2_3:65903566-65903585 Msa0306780:intron 30.0%
TTACATCAAATTCTTGCAAC+TGG + chr2_3:65903704-65903723 Msa0306780:intron 30.0%
ATTATATGGATATGATGGCA+TGG + chr2_3:65903739-65903758 Msa0306780:intron 30.0%
GATTATGGCTGTTAGAAATA+TGG + chr2_3:65903829-65903848 Msa0306780:CDS 30.0%
TATCAAAGCAGCAATACTTA+AGG + chr2_3:65903865-65903884 Msa0306780:CDS 30.0%
TCTTACATCAAGATGTTCAA+CGG - chr2_3:65903986-65904005 None:intergenic 30.0%
GAACATCTTGATGTAAGAAA+AGG + chr2_3:65903988-65904007 Msa0306780:intron 30.0%
! CAGTTTTGCCTAAATAAAGA+TGG - chr2_3:65904034-65904053 None:intergenic 30.0%
CATGATCAAGAAAGATAAAC+TGG - chr2_3:65904517-65904536 None:intergenic 30.0%
TTCTTGATCATGTTCATTCA+AGG + chr2_3:65904525-65904544 Msa0306780:intron 30.0%
!! GGGCAATATGTTTGATTTTA+CGG + chr2_3:65904683-65904702 Msa0306780:intron 30.0%
! TGAATAAAAACTCGGTTTGT+TGG - chr2_3:65904710-65904729 None:intergenic 30.0%
TAAAACTCGTAATGTTTCCA+TGG - chr2_3:65904901-65904920 None:intergenic 30.0%
! TCTAAGATGAATTCCTATGT+GGG + chr2_3:65904980-65904999 Msa0306780:intron 30.0%
CTTGATCATTTAGATCAGAA+AGG - chr2_3:65905028-65905047 None:intergenic 30.0%
GATCTAAATGATCAAGAACT+CGG + chr2_3:65905032-65905051 Msa0306780:intron 30.0%
AAACCAATATGTAATTGTGC+AGG + chr2_3:65905176-65905195 Msa0306780:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr2_3:65905205-65905224 Msa0306780:CDS 30.0%
! CTATTGGTTATTACCTTGAT+TGG - chr2_3:65905346-65905365 None:intergenic 30.0%
CAATCAAGGTAATAACCAAT+AGG + chr2_3:65905344-65905363 Msa0306780:intron 30.0%
TTTGAACATAGGTTACCTAT+TGG - chr2_3:65905362-65905381 None:intergenic 30.0%
ATACAAAATAACAGCACATC+TGG - chr2_3:65905391-65905410 None:intergenic 30.0%
GTGATCAATATCATATTAGC+AGG - chr2_3:65905612-65905631 None:intergenic 30.0%
!!! AATCGTTTTAACTGCAAACA+TGG - chr2_3:65905741-65905760 None:intergenic 30.0%
AAAAATTAAGAGCGGACATA+TGG + chr2_3:65905780-65905799 Msa0306780:intron 30.0%
! ATTTAGAATGCCATGTCATA+GGG - chr2_3:65906142-65906161 None:intergenic 30.0%
TAGTAAATTACCTTCATCCA+TGG - chr2_3:65906317-65906336 None:intergenic 30.0%
!!! TGTTTTTTTATGCTGTAGTG+TGG + chr2_3:65906407-65906426 Msa0306780:intron 30.0%
GTACAACAAGAAAATCATTC+AGG + chr2_3:65906481-65906500 Msa0306780:intron 30.0%
!!! TCTGATTATTTTGAATTGGG+TGG + chr2_3:65906576-65906595 Msa0306780:intron 30.0%
TTATGCAACAGGTATAATAC+AGG + chr2_3:65906732-65906751 Msa0306780:intron 30.0%
CCCTCACATTTATAAATCAT+AGG - chr2_3:65906813-65906832 None:intergenic 30.0%
ACTTTCTCCTATCTAAATGT+AGG + chr2_3:65906949-65906968 Msa0306780:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG + chr2_3:65906950-65906969 Msa0306780:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG + chr2_3:65906951-65906970 Msa0306780:intron 30.0%
!! GTATTTTTCAGACAACAATG+TGG + chr2_3:65907030-65907049 Msa0306780:CDS 30.0%
! TGATTTGGCTAAGAAACTTT+GGG + chr2_3:65907081-65907100 Msa0306780:CDS 30.0%
!!! AGCACTGCTCATTTTTTTTT+GGG - chr2_3:65907202-65907221 None:intergenic 30.0%
!!! TAGCACTGCTCATTTTTTTT+TGG - chr2_3:65907203-65907222 None:intergenic 30.0%
AAAAAATGAGCAGTGCTATA+TGG + chr2_3:65907205-65907224 Msa0306780:three_prime_UTR 30.0%
!! AAGGACAAATGGTTGGTAAA+GGG - chr2_3:65901971-65901990 None:intergenic 35.0%
TGAAATGAAGGACAAATGGT+TGG - chr2_3:65901978-65901997 None:intergenic 35.0%
TAAGGTTAGATCAGATGATG+GGG - chr2_3:65902002-65902021 None:intergenic 35.0%
GATAAGGTTAGATCAGATGA+TGG - chr2_3:65902004-65902023 None:intergenic 35.0%
!!! ACTAGTTTTTCTTTGTGGTG+TGG - chr2_3:65902221-65902240 None:intergenic 35.0%
! CAGCTAAACAATTGAGTTGT+CGG - chr2_3:65902255-65902274 None:intergenic 35.0%
! GTTTTCATTGGAGCAATCAT+TGG + chr2_3:65902439-65902458 Msa0306780:five_prime_UTR 35.0%
CTAGCCAAAAGAAAAACATG+TGG - chr2_3:65902538-65902557 None:intergenic 35.0%
! GCTAGTCAAGTTTTTATGGA+AGG + chr2_3:65902553-65902572 Msa0306780:five_prime_UTR 35.0%
!!! GAAGGTGTTGCATTTTCAAA+TGG + chr2_3:65902571-65902590 Msa0306780:five_prime_UTR 35.0%
ACAGGAACAAAAGCTCTTAT+TGG - chr2_3:65902607-65902626 None:intergenic 35.0%
! AAGGAGGATTTTCACTATTG+TGG + chr2_3:65902639-65902658 Msa0306780:five_prime_UTR 35.0%
! GGATTTTCACTATTGTGGAT+TGG + chr2_3:65902644-65902663 Msa0306780:five_prime_UTR 35.0%
GTTTAGAGATGAGATTTCCA+AGG + chr2_3:65902666-65902685 Msa0306780:five_prime_UTR 35.0%
AGGAATGATTAGGTAGCTAT+AGG + chr2_3:65902849-65902868 Msa0306780:five_prime_UTR 35.0%
TATGTTGAAGATGAGATGTG+TGG - chr2_3:65903077-65903096 None:intergenic 35.0%
AAAGTCAATAGTGCAGATCA+TGG - chr2_3:65903270-65903289 None:intergenic 35.0%
TTCTAACAGCCATAATCACA+TGG - chr2_3:65903826-65903845 None:intergenic 35.0%
!!! ATGACGTCAATTTTAGCTGA+GGG - chr2_3:65903896-65903915 None:intergenic 35.0%
! TCGCAGTACCATCTTTATTT+AGG + chr2_3:65904023-65904042 Msa0306780:intron 35.0%
! TAAATTAAGTTAACGGACCC+AGG + chr2_3:65904398-65904417 Msa0306780:intron 35.0%
CCAGAAAACATTACTACTAC+TGG - chr2_3:65904555-65904574 None:intergenic 35.0%
! CCAGTAGTAGTAATGTTTTC+TGG + chr2_3:65904552-65904571 Msa0306780:intron 35.0%
GTAATTGCAAGAAACAATGC+AGG + chr2_3:65904586-65904605 Msa0306780:intron 35.0%
CTGTAGTTCAATGTTGTCTT+TGG - chr2_3:65904638-65904657 None:intergenic 35.0%
!! CTCTAAGATGAATTCCTATG+TGG + chr2_3:65904979-65904998 Msa0306780:intron 35.0%
ACACATATCAGGGAAAGAAA+TGG + chr2_3:65905133-65905152 Msa0306780:intron 35.0%
TGACCTGCACAATTACATAT+TGG - chr2_3:65905182-65905201 None:intergenic 35.0%
GGAAGAATTGTTAATGTCTC+TGG + chr2_3:65905266-65905285 Msa0306780:CDS 35.0%
! AATTGTTAATGTCTCTGGAG+AGG + chr2_3:65905271-65905290 Msa0306780:CDS 35.0%
GGCTTACACATTTGCATATT+CGG + chr2_3:65905292-65905311 Msa0306780:CDS 35.0%
TACACATTTGCATATTCGGA+AGG + chr2_3:65905296-65905315 Msa0306780:CDS 35.0%
! TCTGGTGATGATTTGAACAT+AGG - chr2_3:65905373-65905392 None:intergenic 35.0%
TTAAAACGATTGTCTCACCA+TGG + chr2_3:65905750-65905769 Msa0306780:intron 35.0%
! CTTAATTTTTCATGCAGCCA+TGG - chr2_3:65905770-65905789 None:intergenic 35.0%
GCTGCATGAAAAATTAAGAG+CGG + chr2_3:65905772-65905791 Msa0306780:intron 35.0%
TACAACAAACAGAGTGCATA+TGG + chr2_3:65905832-65905851 Msa0306780:CDS 35.0%
! TCACTTGTTACATCTTGATC+AGG + chr2_3:65905974-65905993 Msa0306780:intron 35.0%
TTACATCTTGATCAGGATGA+TGG + chr2_3:65905981-65906000 Msa0306780:intron 35.0%
TACATCTTGATCAGGATGAT+GGG + chr2_3:65905982-65906001 Msa0306780:intron 35.0%
GTACAAGATAATAGTTACCG+TGG - chr2_3:65906079-65906098 None:intergenic 35.0%
ATCATTAAAGCCCTATGACA+TGG + chr2_3:65906129-65906148 Msa0306780:intron 35.0%
! CATTTAGAATGCCATGTCAT+AGG - chr2_3:65906143-65906162 None:intergenic 35.0%
ATAACAACGGTAGATAATGC+AGG - chr2_3:65906173-65906192 None:intergenic 35.0%
CATTGTAAAATCCACGATAG+TGG - chr2_3:65906199-65906218 None:intergenic 35.0%
TAATTCTCTTTCTCAGACCA+TGG + chr2_3:65906297-65906316 Msa0306780:intron 35.0%
CGTGAATTAAGAAACGTAGT+TGG - chr2_3:65906373-65906392 None:intergenic 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG + chr2_3:65906585-65906604 Msa0306780:intron 35.0%
TGGTTTGATTGTTTGCACAT+TGG + chr2_3:65906605-65906624 Msa0306780:intron 35.0%
ACAGGTATAATACAGGTGAT+TGG + chr2_3:65906739-65906758 Msa0306780:intron 35.0%
CAGGTATAATACAGGTGATT+GGG + chr2_3:65906740-65906759 Msa0306780:intron 35.0%
TGTGATGAAAAATGTTCAGC+AGG + chr2_3:65906768-65906787 Msa0306780:CDS 35.0%
GGGTCGTGTCAAATAAATAT+TGG + chr2_3:65906830-65906849 Msa0306780:intron 35.0%
TTCTCCTATCTAAATGTAGG+GGG + chr2_3:65906952-65906971 Msa0306780:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG + chr2_3:65907080-65907099 Msa0306780:CDS 35.0%
CAGCATGAATTTGATTAAGG+AGG + chr2_3:65907108-65907127 Msa0306780:CDS 35.0%
!! AAATGGTTGGTAAAGGGGTA+AGG - chr2_3:65901965-65901984 None:intergenic 40.0%
!! AGGACAAATGGTTGGTAAAG+GGG - chr2_3:65901970-65901989 None:intergenic 40.0%
!! GAAGGACAAATGGTTGGTAA+AGG - chr2_3:65901972-65901991 None:intergenic 40.0%
GGGTTGAAATGAAGGACAAA+TGG - chr2_3:65901982-65902001 None:intergenic 40.0%
!! AGATGATGGGGTTGAAATGA+AGG - chr2_3:65901990-65902009 None:intergenic 40.0%
TGAGAGGGAGTAGAAAGATA+AGG - chr2_3:65902020-65902039 None:intergenic 40.0%
GAGCTACACACAAAAATGTC+TGG + chr2_3:65902085-65902104 Msa0306780:five_prime_UTR 40.0%
CTACACACAAAAATGTCTGG+TGG + chr2_3:65902088-65902107 Msa0306780:five_prime_UTR 40.0%
ACAAAAATGTCTGGTGGAGT+TGG + chr2_3:65902094-65902113 Msa0306780:five_prime_UTR 40.0%
! AATTGAGTTGTCGGAATGAG+AGG - chr2_3:65902246-65902265 None:intergenic 40.0%
!! ATGGTTAGCCCTGAAGATTT+TGG + chr2_3:65902301-65902320 Msa0306780:five_prime_UTR 40.0%
!! TGTTCTTTTGAAGGGTGAGA+TGG - chr2_3:65902379-65902398 None:intergenic 40.0%
AGAGATGAGATTTCCAAGGT+TGG + chr2_3:65902670-65902689 Msa0306780:five_prime_UTR 40.0%
! CTGTGGCTAATATGGCTTTT+TGG + chr2_3:65902743-65902762 Msa0306780:five_prime_UTR 40.0%
AATAACCAGCAGAGAAGTCA+TGG - chr2_3:65902936-65902955 None:intergenic 40.0%
CATTGGAATGCGTTCTTATC+AGG + chr2_3:65903042-65903061 Msa0306780:five_prime_UTR 40.0%
GAAATCCCTTTCTTCCTGAA+TGG - chr2_3:65903339-65903358 None:intergenic 40.0%
TTCAGGAAGAAAGGGATTTC+TGG + chr2_3:65903339-65903358 Msa0306780:CDS 40.0%
! AAAGGGATTTCTGGATTCTC+AGG + chr2_3:65903348-65903367 Msa0306780:CDS 40.0%
! AAGGGATTTCTGGATTCTCA+GGG + chr2_3:65903349-65903368 Msa0306780:CDS 40.0%
ACTGCTGAACAAGTTACTCA+TGG + chr2_3:65903378-65903397 Msa0306780:CDS 40.0%
ACTCATGGAATTGATGCAAC+TGG + chr2_3:65903393-65903412 Msa0306780:CDS 40.0%
CTACTATTCAACAAAGGGCA+TGG - chr2_3:65903491-65903510 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG + chr2_3:65903654-65903673 Msa0306780:intron 40.0%
!!! CATGACGTCAATTTTAGCTG+AGG - chr2_3:65903897-65903916 None:intergenic 40.0%
CTCAGCTAAAATTGACGTCA+TGG + chr2_3:65903895-65903914 Msa0306780:CDS 40.0%
GGAGTTAGATCTCAGTTCAA+TGG + chr2_3:65903916-65903935 Msa0306780:CDS 40.0%
AAGACCAGAGGAGTTGAATT+CGG - chr2_3:65903963-65903982 None:intergenic 40.0%
TGTAAGAAAAGGAACCGACA+TGG + chr2_3:65903999-65904018 Msa0306780:intron 40.0%
GATAAAGGGCTAACTTGACA+CGG + chr2_3:65904345-65904364 Msa0306780:intron 40.0%
AACTGGAACACAGATACTCA+TGG - chr2_3:65904500-65904519 None:intergenic 40.0%
TGTCTTTGGACAGCATGAAA+GGG - chr2_3:65904624-65904643 None:intergenic 40.0%
TTGTCTTTGGACAGCATGAA+AGG - chr2_3:65904625-65904644 None:intergenic 40.0%
CACAAACCACTTAGGTATGT+GGG + chr2_3:65904663-65904682 Msa0306780:intron 40.0%
ATATTGCCCACATACCTAAG+TGG - chr2_3:65904672-65904691 None:intergenic 40.0%
ACACACACACACACATATCA+GGG + chr2_3:65905123-65905142 Msa0306780:intron 40.0%
GCACACGAAAGTAAGAAAGA+AGG + chr2_3:65905245-65905264 Msa0306780:CDS 40.0%
! TGGGAAATCGGCTTTACTAT+TGG + chr2_3:65905494-65905513 Msa0306780:intron 40.0%
! CATCGTTATCAGCAGGTTTT+TGG - chr2_3:65905665-65905684 None:intergenic 40.0%
! CAAAAACCTGCTGATAACGA+TGG + chr2_3:65905663-65905682 Msa0306780:intron 40.0%
CTCATTTCAACGAGTACTAC+AGG - chr2_3:65905699-65905718 None:intergenic 40.0%
CTGTAGTACTCGTTGAAATG+AGG + chr2_3:65905697-65905716 Msa0306780:intron 40.0%
ACATCTTGATCAGGATGATG+GGG + chr2_3:65905983-65906002 Msa0306780:intron 40.0%
ACTGTGAATTCTCTTCATCC+AGG + chr2_3:65906014-65906033 Msa0306780:CDS 40.0%
AGATTGGTGAGAATGATTCC+TGG - chr2_3:65906035-65906054 None:intergenic 40.0%
! ACGATAGTGGCACATAACAA+CGG - chr2_3:65906186-65906205 None:intergenic 40.0%
GAATGAGTGGTGAAAGTTAG+TGG - chr2_3:65906530-65906549 None:intergenic 40.0%
CACTAATTCCCTTCACTTGT+GGG - chr2_3:65907006-65907025 None:intergenic 40.0%
CAAAAGAGAATCACAGGGAA+GGG + chr2_3:65907054-65907073 Msa0306780:CDS 40.0%
GTTGTTGTCTTATCAGCCAG+TGG + chr2_3:65902277-65902296 Msa0306780:five_prime_UTR 45.0%
ACTATGCTCTTCACCAACCT+TGG - chr2_3:65902686-65902705 None:intergenic 45.0%
!! AAGGTTGGTGAAGAGCATAG+TGG + chr2_3:65902685-65902704 Msa0306780:five_prime_UTR 45.0%
!! AGCACTTGCTGTGGCTAATA+TGG + chr2_3:65902735-65902754 Msa0306780:five_prime_UTR 45.0%
TTGAACCATGACTTCTCTGC+TGG + chr2_3:65902928-65902947 Msa0306780:five_prime_UTR 45.0%
TTACCATCATGTGGCCATTC+AGG + chr2_3:65903322-65903341 Msa0306780:exon 45.0%
ATGTGGCCATTCAGGAAGAA+AGG + chr2_3:65903330-65903349 Msa0306780:CDS 45.0%
TGTGGCCATTCAGGAAGAAA+GGG + chr2_3:65903331-65903350 Msa0306780:CDS 45.0%
GGATATGATGGCATGGTAAC+AGG + chr2_3:65903746-65903765 Msa0306780:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG - chr2_3:65903777-65903796 None:intergenic 45.0%
! TGTGACCTCATTGTTGTTCG+AGG + chr2_3:65904214-65904233 Msa0306780:intron 45.0%
! GTGACCTCATTGTTGTTCGA+GGG + chr2_3:65904215-65904234 Msa0306780:intron 45.0%
TAGACCCTCGAACAACAATG+AGG - chr2_3:65904222-65904241 None:intergenic 45.0%
CAGTTTGCCACAAACCACTT+AGG + chr2_3:65904655-65904674 Msa0306780:CDS 45.0%
CCACATACCTAAGTGGTTTG+TGG - chr2_3:65904665-65904684 None:intergenic 45.0%
CCACAAACCACTTAGGTATG+TGG + chr2_3:65904662-65904681 Msa0306780:intron 45.0%
AGAGAAAAGGAGACATGCAC+TGG + chr2_3:65904791-65904810 Msa0306780:intron 45.0%
!! AGTTACAAAGGGTGCTTCCA+TGG + chr2_3:65904881-65904900 Msa0306780:intron 45.0%
GTGTGTGTGTGTAGTGAAGT+AGG - chr2_3:65905101-65905120 None:intergenic 45.0%
CACACACACACACACATATC+AGG + chr2_3:65905122-65905141 Msa0306780:intron 45.0%
AAAGAGACTAGCACACCTTG+AGG - chr2_3:65905906-65905925 None:intergenic 45.0%
ACCAATCTTTCCCGCCATAT+GGG + chr2_3:65906047-65906066 Msa0306780:CDS 45.0%
! TACCGTGGATTACACCCATA+TGG - chr2_3:65906064-65906083 None:intergenic 45.0%
! GTTGTTATGTGCCACTATCG+TGG + chr2_3:65906185-65906204 Msa0306780:intron 45.0%
CTTTCTCAGACCATGGATGA+AGG + chr2_3:65906304-65906323 Msa0306780:intron 45.0%
! GTGAAAGTTAGTGGACAGAC+TGG - chr2_3:65906521-65906540 None:intergenic 45.0%
CAATGCTACATAGCAGGTTG+TGG - chr2_3:65906981-65907000 None:intergenic 45.0%
CCACTAATTCCCTTCACTTG+TGG - chr2_3:65907007-65907026 None:intergenic 45.0%
CCACAAGTGAAGGGAATTAG+TGG + chr2_3:65907004-65907023 Msa0306780:CDS 45.0%
TGTGGCCAAAAGAGAATCAC+AGG + chr2_3:65907048-65907067 Msa0306780:CDS 45.0%
GTGGCCAAAAGAGAATCACA+GGG + chr2_3:65907049-65907068 Msa0306780:CDS 45.0%
! CCTTCCCTGTGATTCTCTTT+TGG - chr2_3:65907056-65907075 None:intergenic 45.0%
CCAAAAGAGAATCACAGGGA+AGG + chr2_3:65907053-65907072 Msa0306780:CDS 45.0%
!! GTTTTAACCCACGTCTCCAA+TGG + chr2_3:65907287-65907306 Msa0306780:three_prime_UTR 45.0%
!! AAATGAAAAAAATAAAAAAA+TGG - chr2_3:65903463-65903482 None:intergenic 5.0%
TGGTAAAGGGGTAAGGTTCG+TGG - chr2_3:65901958-65901977 None:intergenic 50.0%
AGGCTAATGTCACAGCCAGT+TGG - chr2_3:65902121-65902140 None:intergenic 50.0%
TGTCTTATCAGCCAGTGGCA+TGG + chr2_3:65902282-65902301 Msa0306780:five_prime_UTR 50.0%
CTTCCTGAATGGCCACATGA+TGG - chr2_3:65903328-65903347 None:intergenic 50.0%
GGTCTCACTGCTATTGTCAC+TGG + chr2_3:65903414-65903433 Msa0306780:CDS 50.0%
ATGGTAACAGGAGCAACCAG+TGG + chr2_3:65903758-65903777 Msa0306780:intron 50.0%
ACAGGAGCAACCAGTGGTAT+TGG + chr2_3:65903764-65903783 Msa0306780:intron 50.0%
GCGTGGTGTCCATGTGATTA+TGG + chr2_3:65903814-65903833 Msa0306780:CDS 50.0%
GCATCCGAATTCAACTCCTC+TGG + chr2_3:65903956-65903975 Msa0306780:CDS 50.0%
GATGTTCAACGGAAGACCAG+AGG - chr2_3:65903975-65903994 None:intergenic 50.0%
GATGGTACTGCGATCCATGT+CGG - chr2_3:65904016-65904035 None:intergenic 50.0%
! TAAGTTAACGGACCCAGGTG+CGG + chr2_3:65904403-65904422 Msa0306780:intron 50.0%
TAAAAGGCGAATCCGCACCT+GGG - chr2_3:65904418-65904437 None:intergenic 50.0%
ATAAAAGGCGAATCCGCACC+TGG - chr2_3:65904419-65904438 None:intergenic 50.0%
CATCACAGTTGCTCCCACAT+AGG - chr2_3:65904996-65905015 None:intergenic 50.0%
!! TTTCGGTGTTCTGCGAGTCT+TGG + chr2_3:65905552-65905571 Msa0306780:intron 50.0%
ACGACTCCATCGTTATCAGC+AGG - chr2_3:65905672-65905691 None:intergenic 50.0%
!! TCTTGATCAGGATGATGGGG+TGG + chr2_3:65905986-65906005 Msa0306780:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG + chr2_3:65906046-65906065 Msa0306780:CDS 50.0%
! ACCCATATGGCGGGAAAGAT+TGG - chr2_3:65906051-65906070 None:intergenic 50.0%
! GTGGATTACACCCATATGGC+GGG - chr2_3:65906060-65906079 None:intergenic 50.0%
! CGTGGATTACACCCATATGG+CGG - chr2_3:65906061-65906080 None:intergenic 50.0%
CGCCATATGGGTGTAATCCA+CGG + chr2_3:65906059-65906078 Msa0306780:CDS 50.0%
GCTGCCCCCTACATTTAGAT+AGG - chr2_3:65906959-65906978 None:intergenic 50.0%
TGGGTGCAATGCTACATAGC+AGG - chr2_3:65906987-65907006 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG + chr2_3:65906994-65907013 Msa0306780:CDS 50.0%
GCATTGCACCCACAAGTGAA+GGG + chr2_3:65906995-65907014 Msa0306780:CDS 50.0%
TCTGGTGGAGTTGGACCAAC+TGG + chr2_3:65902103-65902122 Msa0306780:five_prime_UTR 55.0%
TTCAGGGCTAACCATGCCAC+TGG - chr2_3:65902296-65902315 None:intergenic 55.0%
!! TGCTGGAAGAGCACTTGCTG+TGG + chr2_3:65902726-65902745 Msa0306780:five_prime_UTR 55.0%
ACGCGTGTTCTTGCTTTGCG+TGG + chr2_3:65903797-65903816 Msa0306780:CDS 55.0%
! GAGGCGTCTTGCAAGCTCAT+TGG - chr2_3:65905887-65905906 None:intergenic 55.0%
TGAGCTTGCAAGACGCCTCA+AGG + chr2_3:65905888-65905907 Msa0306780:CDS 55.0%
! ACAGGGAAGGGACGCTGATT+TGG + chr2_3:65907066-65907085 Msa0306780:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 65901872 65907315 65901872 ID=Msa0306780;Name=Msa0306780
chr2_3 mRNA 65901872 65907315 65901872 ID=Msa0306780-mRNA-1;Parent=Msa0306780;Name=Msa0306780-mRNA-1;_AED=0.32;_eAED=0.32;_QI=1458|1|1|1|1|1|8|180|315
chr2_3 exon 65901872 65903435 65901872 ID=Msa0306780-mRNA-1:exon:21952;Parent=Msa0306780-mRNA-1
chr2_3 exon 65903768 65903999 65903768 ID=Msa0306780-mRNA-1:exon:21953;Parent=Msa0306780-mRNA-1
chr2_3 exon 65904597 65904676 65904597 ID=Msa0306780-mRNA-1:exon:21954;Parent=Msa0306780-mRNA-1
chr2_3 exon 65905198 65905351 65905198 ID=Msa0306780-mRNA-1:exon:21955;Parent=Msa0306780-mRNA-1
chr2_3 exon 65905831 65905909 65905831 ID=Msa0306780-mRNA-1:exon:21956;Parent=Msa0306780-mRNA-1
chr2_3 exon 65905996 65906080 65905996 ID=Msa0306780-mRNA-1:exon:21957;Parent=Msa0306780-mRNA-1
chr2_3 exon 65906743 65906789 65906743 ID=Msa0306780-mRNA-1:exon:21958;Parent=Msa0306780-mRNA-1
chr2_3 exon 65906971 65907315 65906971 ID=Msa0306780-mRNA-1:exon:21959;Parent=Msa0306780-mRNA-1
chr2_3 five_prime_UTR 65901872 65903329 65901872 ID=Msa0306780-mRNA-1:five_prime_utr;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65903330 65903435 65903330 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65903768 65903999 65903768 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65904597 65904676 65904597 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65905198 65905351 65905198 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65905831 65905909 65905831 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65905996 65906080 65905996 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65906743 65906789 65906743 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 CDS 65906971 65907135 65906971 ID=Msa0306780-mRNA-1:cds;Parent=Msa0306780-mRNA-1
chr2_3 three_prime_UTR 65907136 65907315 65907136 ID=Msa0306780-mRNA-1:three_prime_utr;Parent=Msa0306780-mRNA-1
Gene Sequence

>Msa0306780

ATGTGGCCATTCAGGAAGAAAGGGATTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGTCTCACTGCTATTGTCACTGGAGCAACCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATATGGTTGCTGCTAATGATATCAAAGCAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGACGTCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCCGAATTCAACTCCTCTGGTCTTCCGTTGAACATCTTGATAAACAATGCAGGAATCATGTCATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGACGAAAACAGCACACGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCTCTGGAGAGGCTTACACATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGTTACAACAAACAGAGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGATGATGGGGTGGATATCACTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTAATCCACGGTATAATACAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGACAACAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG
Protein sequence

>Msa0306780

MWPFRKKGISGFSGSSTAEQVTHGIDATGLTAIVTGATSGIGVETTRVLALRGVHVIMAVRNMVAANDIKAAILKEIPSAKIDVMELDLSSMESVKKFASEFNSSGLPLNILINNAGIMSCPFMLSKDNIELQFATNHLGHFLLTNLLLDTMTKTAHESKKEGRIVNVSGEAYTFAYSEGIRFDKINDQSSYNKQSAYGQSKLANILHANELARRLKDDGVDITVNSLHPGIILTNLSRHMGVIHGIIQVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE*