AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791100 MtrunA17_Chr1g0202931 93.016 315 20 1 1 313 1 315 0.0 607
Msa0791100 MtrunA17_Chr1g0202891 87.937 315 36 1 1 313 1 315 0.0 566
Msa0791100 MtrunA17_Chr1g0202871 80.952 315 58 1 1 313 1 315 0.0 528
Msa0791100 MtrunA17_Chr1g0202861 77.143 315 70 1 1 313 42 356 0.0 515
Msa0791100 MtrunA17_Chr8g0386971 69.775 311 92 1 1 309 1 311 7.09e-161 451
Msa0791100 MtrunA17_Chr6g0470321 70.033 307 87 3 10 311 18 324 1.99e-152 430
Msa0791100 MtrunA17_Chr6g0470501 69.055 307 90 3 10 311 37 343 4.15e-152 430
Msa0791100 MtrunA17_Chr1g0182541 58.361 305 125 1 8 310 13 317 7.48e-128 367
Msa0791100 MtrunA17_Chr7g0262941 58.497 306 124 2 8 310 13 318 1.20e-126 364
Msa0791100 MtrunA17_Chr4g0058731 45.631 309 162 3 8 310 24 332 1.38e-85 261
Msa0791100 MtrunA17_Chr8g0388831 44.373 311 167 4 8 312 13 323 4.24e-84 256
Msa0791100 MtrunA17_Chr3g0117241 50.704 142 67 1 8 146 13 154 9.15e-41 139
Msa0791100 MtrunA17_Chr3g0117251 41.317 167 95 2 147 310 1 167 1.39e-36 129
Msa0791100 MtrunA17_Chr6g0481311 35.968 253 148 6 30 273 62 309 9.98e-31 119
Msa0791100 MtrunA17_Chr2g0317921 30.351 313 181 11 31 310 88 396 2.65e-28 112
Msa0791100 MtrunA17_Chr1g0202911 63.514 74 27 0 33 106 4 77 1.20e-26 100
Msa0791100 MtrunA17_Chr6g0466681 28.625 269 174 5 25 289 62 316 2.22e-25 103
Msa0791100 MtrunA17_Chr6g0469251 27.458 295 186 9 37 310 14 301 4.25e-15 74.7
Msa0791100 MtrunA17_Chr3g0079561 28.571 252 152 9 80 310 13 257 9.58e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791100 AT4G11410.1 68.889 315 96 1 1 313 1 315 2.44e-160 450
Msa0791100 AT4G23420.1 68.269 312 96 2 1 309 1 312 4.53e-159 447
Msa0791100 AT4G23420.2 68.269 312 96 2 1 309 1 312 4.53e-159 447
Msa0791100 AT4G23430.2 66.139 316 104 2 1 313 1 316 4.25e-158 444
Msa0791100 AT4G23420.3 67.419 310 98 2 3 309 20 329 1.45e-155 438
Msa0791100 AT4G23430.1 65.823 316 103 3 1 313 1 314 6.40e-155 436
Msa0791100 AT4G23430.4 63.291 316 103 3 1 313 1 306 3.26e-148 419
Msa0791100 AT4G23430.3 62.975 316 102 4 1 313 1 304 6.10e-145 410
Msa0791100 AT4G23420.5 68.321 262 80 2 1 259 1 262 2.23e-130 372
Msa0791100 AT4G23420.4 73.418 237 61 1 1 235 1 237 2.18e-128 367
Msa0791100 AT2G37540.1 55.700 307 134 1 6 310 10 316 2.59e-124 358
Msa0791100 AT4G11410.2 71.020 245 69 1 1 243 1 245 3.22e-123 353
Msa0791100 AT5G02540.1 57.655 307 128 1 6 310 10 316 6.52e-121 350
Msa0791100 AT2G37540.2 58.650 237 96 1 6 240 10 246 8.70e-99 292
Msa0791100 AT4G24050.1 44.839 310 166 3 8 312 13 322 5.38e-86 261
Msa0791100 AT5G50130.1 46.624 311 160 4 8 312 13 323 5.14e-85 259
Msa0791100 AT5G50130.8 45.936 283 150 2 33 312 7 289 5.31e-78 240
Msa0791100 AT5G50130.7 46.127 284 149 3 33 312 7 290 1.67e-77 239
Msa0791100 AT1G64590.1 45.085 295 157 3 17 306 22 316 1.13e-74 233
Msa0791100 AT5G50130.2 46.038 265 137 4 8 266 13 277 4.05e-70 221
Msa0791100 AT4G24050.2 45.076 264 138 4 8 266 13 274 5.64e-70 219
Msa0791100 AT5G50130.4 46.241 266 136 5 8 266 13 278 1.18e-69 219
Msa0791100 AT5G50130.9 48.163 245 122 3 8 247 13 257 5.82e-69 216
Msa0791100 AT5G50130.3 48.374 246 121 4 8 247 13 258 1.77e-68 214
Msa0791100 AT5G50130.6 45.378 238 126 3 33 266 7 244 8.56e-63 201
Msa0791100 AT5G50130.5 45.607 239 125 4 33 266 7 245 2.48e-62 199
Msa0791100 AT1G03630.1 33.013 312 173 12 31 310 91 398 3.51e-31 121
Msa0791100 AT5G54190.1 29.582 311 182 11 33 310 96 402 3.91e-31 121
Msa0791100 AT1G03630.2 33.013 312 173 12 31 310 89 396 4.35e-31 120
Msa0791100 AT4G27760.1 30.363 303 180 7 30 310 58 351 1.43e-30 119
Msa0791100 AT5G53090.1 31.438 299 182 6 30 310 57 350 9.28e-29 114
Msa0791100 AT4G27440.2 29.942 344 200 13 4 310 59 398 1.61e-27 111
Msa0791100 AT4G27440.1 29.942 344 200 13 4 310 59 398 1.61e-27 111
Msa0791100 AT5G53100.1 30.795 302 183 8 30 310 45 341 1.76e-27 110
Msa0791100 AT4G09750.1 29.811 265 168 6 29 289 43 293 7.39e-27 107
Msa0791100 AT5G54190.2 27.622 286 169 11 58 310 1 281 1.58e-23 98.2
Msa0791100 AT5G04070.1 29.333 300 186 8 32 312 61 353 9.66e-22 94.4
Msa0791100 AT5G15940.1 29.043 303 185 11 32 312 62 356 3.23e-21 93.2
Msa0791100 AT5G15940.3 29.043 303 185 11 32 312 63 357 3.93e-21 92.8
Msa0791100 AT5G15940.2 29.043 303 185 11 32 312 63 357 3.93e-21 92.8
Msa0791100 AT5G15940.4 30.222 225 134 7 32 239 63 281 6.30e-16 77.4
Msa0791100 AT3G59710.3 29.562 274 150 11 31 270 20 284 2.59e-12 66.6
Msa0791100 AT3G59710.1 29.348 276 152 11 31 272 30 296 3.97e-12 66.2
Msa0791100 AT3G59710.2 29.562 274 150 11 31 270 49 313 4.12e-12 66.2
Msa0791100 AT5G61830.1 24.658 292 160 9 32 283 39 310 7.19e-12 65.5
Msa0791100 AT5G61830.2 24.658 292 160 9 32 283 39 310 7.19e-12 65.5

Find 137 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCCTTAATTTACTTTC+TGG 0.188746 5_3:-1944580 None:intergenic
CAATGAAAACATAAAGTTTA+AGG 0.192623 5_3:-1944172 None:intergenic
CATTGGAATGCGTTCTTATC+AGG 0.206730 5_3:+1944762 Msa0791100:five_prime_UTR
TTCAGGAAGAAAGGGATTTC+TGG 0.209019 5_3:+1945059 Msa0791100:CDS
AGCATAGTGGTTCTTATAAA+AGG 0.221115 5_3:+1944444 Msa0791100:five_prime_UTR
CCTTCCCTGTGATTCTCTTT+TGG 0.235273 5_3:-1948756 None:intergenic
TTTCAGCATGAATTTGATTA+AGG 0.259296 5_3:+1948808 Msa0791100:CDS
TCAATTTCTTGTTCTTCTTT+TGG 0.274467 5_3:-1943889 None:intergenic
GGCTTACACATTTGCATATT+CGG 0.280798 5_3:+1946993 Msa0791100:CDS
ACAGGAACAAAAGCTCTTAT+TGG 0.282027 5_3:-1944350 None:intergenic
TCAAGCCAGAAAGTAAATTA+AGG 0.283081 5_3:+1944575 Msa0791100:five_prime_UTR
CTGTAGTTCAATGTTGTCTT+TGG 0.287889 5_3:-1946347 None:intergenic
TTACCATCATGTGGCCATTC+AGG 0.289613 5_3:+1945042 Msa0791100:exon
ATTACAAATCCAAAATCTTC+AGG 0.292734 5_3:-1944056 None:intergenic
CACTAATTCCCTTCACTTGT+GGG 0.304068 5_3:-1948706 None:intergenic
GCGTGGTGTCCATGTGATTA+TGG 0.305515 5_3:+1945534 Msa0791100:CDS
GTTTATGTATGATTTGTATA+AGG 0.310391 5_3:+1944623 Msa0791100:five_prime_UTR
AGCACTTGCTGTGGCTAATA+TGG 0.317291 5_3:+1944481 Msa0791100:five_prime_UTR
CTATTGGTTATTACCTTGAT+TGG 0.330943 5_3:-1947044 None:intergenic
CACCAATCTTTCCCGCCATA+TGG 0.337645 5_3:+1947749 Msa0791100:CDS
CTGATTTGGCTAAGAAACTT+TGG 0.344972 5_3:+1948783 Msa0791100:CDS
GATTATGGCTGTTAGAAATA+TGG 0.346372 5_3:+1945549 Msa0791100:CDS
AGGAAAATTGTTAATGTCTC+TGG 0.348098 5_3:+1946967 Msa0791100:CDS
ACAGGGAAGGGACGCTGATT+TGG 0.349751 5_3:+1948769 Msa0791100:CDS
AAAGGGATTTCTGGATTCTC+AGG 0.351168 5_3:+1945068 Msa0791100:CDS
TTCCTGTTCTTTATAATTCA+AGG 0.354426 5_3:+1944366 Msa0791100:five_prime_UTR
AGGAATGATTAGGTAGCTAT+AGG 0.364885 5_3:+1944595 Msa0791100:five_prime_UTR
GAAATACACACATTTGTATA+TGG 0.380631 5_3:+1944715 Msa0791100:five_prime_UTR
ATGGTTAGCCCTGAAGATTT+TGG 0.385009 5_3:+1944047 Msa0791100:five_prime_UTR
ACCCATATGGCGGGAAAGAT+TGG 0.391956 5_3:-1947751 None:intergenic
TGATTTGGCTAAGAAACTTT+GGG 0.394235 5_3:+1948784 Msa0791100:CDS
CAGCTAAACAATTGAGTTGT+CGG 0.396906 5_3:-1943998 None:intergenic
CTCCTTGAATTATAAAGAAC+AGG 0.405168 5_3:-1944368 None:intergenic
ACAGGAGCAACCAGTGGTAT+TGG 0.407904 5_3:+1945484 Msa0791100:intron
CCACTAATTCCCTTCACTTG+TGG 0.410260 5_3:-1948707 None:intergenic
TACAACAAACAGAGTGCATA+TGG 0.418172 5_3:+1947535 Msa0791100:CDS
TATTTGAATGATGACATCAT+TGG 0.424697 5_3:+1944844 Msa0791100:five_prime_UTR
AGTAATTAAATAAATTTGAC+AGG 0.425043 5_3:+1944691 Msa0791100:five_prime_UTR
AAGGACAAATGGTTGGTAAA+GGG 0.425534 5_3:-1943700 None:intergenic
TGGAATATTTGAAGGTGATA+AGG 0.427078 5_3:+1944238 Msa0791100:five_prime_UTR
ACAGGTATAATACAGGTGAT+TGG 0.428022 5_3:+1948442 Msa0791100:intron
CAGGTATAATACAGGTGATT+GGG 0.437343 5_3:+1948443 Msa0791100:intron
AAGTAAATTAAGGAATGATT+AGG 0.437346 5_3:+1944585 Msa0791100:five_prime_UTR
GAGAGAGGAGTAGAAAGATA+AGG 0.441520 5_3:-1943754 None:intergenic
TCTGGTGGAGTTGGACCAAC+TGG 0.442420 5_3:+1943850 Msa0791100:five_prime_UTR
ACAAAATTAATGACCAATCA+AGG 0.448930 5_3:+1947031 Msa0791100:CDS
TTACATCTTGATCAGGATGA+TGG 0.449048 5_3:+1947684 Msa0791100:intron
AAAACTCTAGGAAGATAAAC+AGG 0.453140 5_3:-1944539 None:intergenic
GAAATCCCTTTCTTCCTGAA+TGG 0.455018 5_3:-1945056 None:intergenic
GGAATGATTAGGTAGCTATA+GGG 0.457187 5_3:+1944596 Msa0791100:five_prime_UTR
TATCAAAGCAGCAATACTTA+AGG 0.461173 5_3:+1945585 Msa0791100:CDS
CCACATACCTAAGTGGTTTG+TGG 0.461540 5_3:-1946374 None:intergenic
GAGGCGTCTTGCAAGCTCAT+TGG 0.461840 5_3:-1947587 None:intergenic
AGATGATGGGGTTGAAATGA+AGG 0.462247 5_3:-1943719 None:intergenic
AAGACCAGAGGAGTTGAATT+CGG 0.463073 5_3:-1945680 None:intergenic
CCATGTAAAATATATGCTAT+AGG 0.465903 5_3:-1944218 None:intergenic
TGGTAAAGGGGTAAGGTTCG+TGG 0.466371 5_3:-1943687 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 5_3:-1947735 None:intergenic
CCACAAGTGAAGGGAATTAG+TGG 0.477838 5_3:+1948707 Msa0791100:CDS
TAACAAGAGAATTTGTGATC+AGG 0.480171 5_3:-1943809 None:intergenic
ACTCATGGAATTGATGCAAC+TGG 0.480827 5_3:+1945113 Msa0791100:CDS
GCATCCGAATTCAACTCCTC+TGG 0.483856 5_3:+1945676 Msa0791100:CDS
GGAGTTAGATCTCAGTTCAA+TGG 0.492329 5_3:+1945636 Msa0791100:CDS
ATGTGGCCATTCAGGAAGAA+AGG 0.492857 5_3:+1945050 Msa0791100:CDS
GTTAGATTAGATCAGATGAT+GGG 0.493187 5_3:-1943732 None:intergenic
TTGTCTTTGGACAGCATGAA+AGG 0.496194 5_3:-1946334 None:intergenic
ACTATGCTCTTCACCAACCT+TGG 0.496587 5_3:-1944429 None:intergenic
TTACAAATCCAAAATCTTCA+GGG 0.499930 5_3:-1944055 None:intergenic
GAAGGACAAATGGTTGGTAA+AGG 0.500940 5_3:-1943701 None:intergenic
CAGTTTGCCACAAACCACTT+AGG 0.502711 5_3:+1946367 Msa0791100:CDS
TCTTATAAAAGGATTTATGC+TGG 0.505951 5_3:+1944455 Msa0791100:five_prime_UTR
GAGTTCCAAGCCTAGAGATT+CGG 0.506605 5_3:-1943603 None:intergenic
ACCAATCTTTCCCGCCATAT+GGG 0.511754 5_3:+1947750 Msa0791100:CDS
TTCAATTCTTATACAACACT+TGG 0.513169 5_3:-1948844 None:intergenic
CAGCATGAATTTGATTAAGG+AGG 0.517327 5_3:+1948811 Msa0791100:CDS
CTTCCTGAATGGCCACATGA+TGG 0.519739 5_3:-1945045 None:intergenic
GGCGCAAACCATTGGAGACG+TGG 0.520870 5_3:-1948998 None:intergenic
TGTGGCCAAAAGAGAATCAC+AGG 0.523542 5_3:+1948751 Msa0791100:CDS
GGTCTCACTGCTATTGTCAC+TGG 0.523841 5_3:+1945134 Msa0791100:CDS
AGGACAAATGGTTGGTAAAG+GGG 0.524435 5_3:-1943699 None:intergenic
TACCGTGGATTACACCCATA+TGG 0.529890 5_3:-1947764 None:intergenic
AATTGAGTTGTCGGAATGAG+AGG 0.532641 5_3:-1943989 None:intergenic
TACACATTTGCATATTCGGA+AGG 0.534970 5_3:+1946997 Msa0791100:CDS
TGACACCGAATCTCTAGGCT+TGG 0.535666 5_3:+1943598 None:intergenic
AAATGGTTGGTAAAGGGGTA+AGG 0.536543 5_3:-1943694 None:intergenic
GGTTAGATTAGATCAGATGA+TGG 0.538184 5_3:-1943733 None:intergenic
CTCAGCTAAAATTGACGTCA+TGG 0.538413 5_3:+1945615 Msa0791100:CDS
TGTGGCCATTCAGGAAGAAA+GGG 0.539455 5_3:+1945051 Msa0791100:CDS
TTCAGGGCTAACCATGCCAC+TGG 0.540431 5_3:-1944039 None:intergenic
TTATGCAACAGGTATAATAC+AGG 0.545042 5_3:+1948435 Msa0791100:intron
CGCCATATGGGTGTAATCCA+CGG 0.545789 5_3:+1947762 Msa0791100:CDS
AGAGATGAGATTTCCAAGGT+TGG 0.547974 5_3:+1944416 Msa0791100:five_prime_UTR
AAAGTCAATAGTGCAGATCA+TGG 0.548372 5_3:-1944987 None:intergenic
AGCATTGCACCCACAAGTGA+AGG 0.549189 5_3:+1948697 Msa0791100:CDS
ACTGCTGAACAAGTTACTCA+TGG 0.551436 5_3:+1945098 Msa0791100:CDS
GGGTTGAAATGAAGGACAAA+TGG 0.551751 5_3:-1943711 None:intergenic
TGTCTTTGGACAGCATGAAA+GGG 0.554321 5_3:-1946333 None:intergenic
GTAATTGCAAGAAACAATGC+AGG 0.558972 5_3:+1946298 Msa0791100:intron
TAGTGTGACACCGAATCTCT+AGG 0.559804 5_3:+1943593 None:intergenic
TACATCTTGATCAGGATGAT+GGG 0.560641 5_3:+1947685 Msa0791100:intron
ACTGTGAATTCTCTTCATCC+AGG 0.561741 5_3:+1947717 Msa0791100:CDS
TGAGCTTGCAAGACGCCTCA+AGG 0.563477 5_3:+1947591 Msa0791100:CDS
CAATGCTACATAGCAGGTTG+TGG 0.563645 5_3:-1948681 None:intergenic
ATATTGCCCACATACCTAAG+TGG 0.571755 5_3:-1946381 None:intergenic
GCACACGAAAGTAAGAAAGA+AGG 0.574680 5_3:+1946947 Msa0791100:intron
GTGGATTACACCCATATGGC+GGG 0.577534 5_3:-1947760 None:intergenic
CAAAAGAGAATCACAGGGAA+GGG 0.585563 5_3:+1948757 Msa0791100:CDS
AAGGGATTTCTGGATTCTCA+GGG 0.585889 5_3:+1945069 Msa0791100:CDS
GTTTAGAGATGAGATTTCCA+AGG 0.593748 5_3:+1944412 Msa0791100:five_prime_UTR
TGAAATGAAGGACAAATGGT+TGG 0.594185 5_3:-1943707 None:intergenic
AATAACCAGCAGAAAAGTCA+TGG 0.596108 5_3:-1944653 None:intergenic
TCTTACATCAAGATGTTCAA+CGG 0.596176 5_3:-1945703 None:intergenic
AATTGTTAATGTCTCTGGAG+AGG 0.598495 5_3:+1946972 Msa0791100:CDS
TGGGTGCAATGCTACATAGC+AGG 0.602362 5_3:-1948687 None:intergenic
AGTCTCAACTCCAATACCAC+TGG 0.604354 5_3:-1945494 None:intergenic
GCGCAAACCATTGGAGACGT+GGG 0.606770 5_3:-1948997 None:intergenic
AGGCTAATGTCACAGCCAGT+TGG 0.608232 5_3:-1943865 None:intergenic
ATTGACTTTGTGAATTGTGA+CGG 0.611694 5_3:+1945001 Msa0791100:five_prime_UTR
TGCTGGAAGAGCACTTGCTG+TGG 0.614632 5_3:+1944472 Msa0791100:five_prime_UTR
CCAAAAGAGAATCACAGGGA+AGG 0.615970 5_3:+1948756 Msa0791100:CDS
ATATTTGAAGGTGATAAGGA+AGG 0.616957 5_3:+1944242 Msa0791100:five_prime_UTR
ACGCGTGTTCTTGCTTTGCG+TGG 0.623338 5_3:+1945517 Msa0791100:CDS
GCATTGCACCCACAAGTGAA+GGG 0.624705 5_3:+1948698 Msa0791100:CDS
TCTTGATCAGGATGATGGGG+TGG 0.624894 5_3:+1947689 Msa0791100:intron
CGTGGATTACACCCATATGG+CGG 0.632054 5_3:-1947761 None:intergenic
GTAATTAAATAAATTTGACA+GGG 0.633762 5_3:+1944692 Msa0791100:five_prime_UTR
TTCTAACAGCCATAATCACA+TGG 0.652025 5_3:-1945543 None:intergenic
TTAGATTAGATCAGATGATG+GGG 0.652529 5_3:-1943731 None:intergenic
TAATTAAATAAATTTGACAG+GGG 0.658021 5_3:+1944693 Msa0791100:five_prime_UTR
GATGTTCAACGGAAGACCAG+AGG 0.668187 5_3:-1945692 None:intergenic
AAGGTTGGTGAAGAGCATAG+TGG 0.672560 5_3:+1944431 Msa0791100:five_prime_UTR
CTGTTCTTTATAATTCAAGG+AGG 0.674362 5_3:+1944369 Msa0791100:five_prime_UTR
ACATCTTGATCAGGATGATG+GGG 0.677424 5_3:+1947686 Msa0791100:intron
AACATAGTGACATAATAACA+TGG 0.690821 5_3:+1944811 Msa0791100:five_prime_UTR
ATGGTAACAGGAGCAACCAG+TGG 0.692173 5_3:+1945478 Msa0791100:intron
TATGTTGAAGATGAGATGTG+TGG 0.706621 5_3:-1944794 None:intergenic
GTGGCCAAAAGAGAATCACA+GGG 0.746378 5_3:+1948752 Msa0791100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTATATATGATTT+AGG - chr5_3:1944911-1944930 None:intergenic 10.0%
!! ATTAGATATTATAACAATTA+TGG - chr5_3:1945870-1945889 None:intergenic 10.0%
!! TCAAATAAATAGTAAATAAA+AGG - chr5_3:1946146-1946165 None:intergenic 10.0%
!! TAAAAATAATTGTAAAATGA+TGG - chr5_3:1946567-1946586 None:intergenic 10.0%
!!! TTTTGTATTTTGTTTTTAAA+TGG + chr5_3:1947104-1947123 Msa0791100:intron 10.0%
!! AGTAATTAAATAAATTTGAC+AGG + chr5_3:1944691-1944710 Msa0791100:five_prime_UTR 15.0%
!! GTAATTAAATAAATTTGACA+GGG + chr5_3:1944692-1944711 Msa0791100:five_prime_UTR 15.0%
!! TAATTAAATAAATTTGACAG+GGG + chr5_3:1944693-1944712 Msa0791100:five_prime_UTR 15.0%
!!! ATTTTATATATGATTTAGGT+GGG - chr5_3:1944907-1944926 None:intergenic 15.0%
!!! AATTTTATATATGATTTAGG+TGG - chr5_3:1944908-1944927 None:intergenic 15.0%
!! ATAATCTTGAAGTTAAATTA+TGG - chr5_3:1945352-1945371 None:intergenic 15.0%
!! AAATTATTATATGGATATGA+TGG + chr5_3:1945454-1945473 Msa0791100:intron 15.0%
!! AAAACTTTAAATTAAGTTAG+AGG - chr5_3:1945787-1945806 None:intergenic 15.0%
!!! AATGCAATTTACTTTTTAAA+TGG - chr5_3:1945816-1945835 None:intergenic 15.0%
!! GAAACTTTAAATTAAGTTAA+CGG + chr5_3:1946103-1946122 Msa0791100:intron 15.0%
!!! TTTTTAAATTACAGTTACAA+AGG + chr5_3:1946581-1946600 Msa0791100:intron 15.0%
!!! TTTTAAATTACAGTTACAAA+GGG + chr5_3:1946582-1946601 Msa0791100:intron 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG + chr5_3:1947177-1947196 Msa0791100:intron 15.0%
!!! AACTTCAATTTTATTTTCTT+GGG + chr5_3:1947178-1947197 Msa0791100:intron 15.0%
!! TACGAGTAAATAAATAATTA+CGG - chr5_3:1947980-1947999 None:intergenic 15.0%
!!! TTTATCTGATTATTTTGAAT+TGG + chr5_3:1948275-1948294 Msa0791100:intron 15.0%
!!! TTATCTGATTATTTTGAATT+GGG + chr5_3:1948276-1948295 Msa0791100:intron 15.0%
!! TTGTTATAAACGTTTATTAA+GGG + chr5_3:1948556-1948575 Msa0791100:intron 15.0%
!! CAATGAAAACATAAAGTTTA+AGG - chr5_3:1944175-1944194 None:intergenic 20.0%
!!! CTTAAACTTTATGTTTTCAT+TGG + chr5_3:1944173-1944192 Msa0791100:five_prime_UTR 20.0%
!!! ATTTTACATGGAATATTTGA+AGG + chr5_3:1944230-1944249 Msa0791100:five_prime_UTR 20.0%
!! AAGTAAATTAAGGAATGATT+AGG + chr5_3:1944585-1944604 Msa0791100:five_prime_UTR 20.0%
!!! GTTTATGTATGATTTGTATA+AGG + chr5_3:1944623-1944642 Msa0791100:five_prime_UTR 20.0%
!! TAAAACTACTATTCAACAAA+GGG - chr5_3:1945216-1945235 None:intergenic 20.0%
!! ATAAAACTACTATTCAACAA+AGG - chr5_3:1945217-1945236 None:intergenic 20.0%
!! CTACATATATTCATACATAA+AGG - chr5_3:1945266-1945285 None:intergenic 20.0%
!! GGCTATGAAAAATTATTATA+TGG + chr5_3:1945445-1945464 Msa0791100:intron 20.0%
!! GAATCAAATGAATAAAAACT+CGG - chr5_3:1946430-1946449 None:intergenic 20.0%
!! TCTAATAAAATGAAGAGAAA+AGG + chr5_3:1946490-1946509 Msa0791100:intron 20.0%
!!! ATTTTGTTTTTAAATGGAAG+AGG + chr5_3:1947110-1947129 Msa0791100:intron 20.0%
!!! ATTTTATTTTCTTGGGAAAT+CGG + chr5_3:1947185-1947204 Msa0791100:intron 20.0%
!! ATAGTACTCAATATGTATTT+CGG + chr5_3:1947238-1947257 Msa0791100:intron 20.0%
!! TAAATAATTACGGGTATAAT+AGG - chr5_3:1947970-1947989 None:intergenic 20.0%
!! ACGAGTAAATAAATAATTAC+GGG - chr5_3:1947979-1947998 None:intergenic 20.0%
!!! TAGAAAACAAACACATTTTA+TGG - chr5_3:1948360-1948379 None:intergenic 20.0%
!! GTTGTTATAAACGTTTATTA+AGG + chr5_3:1948555-1948574 Msa0791100:intron 20.0%
! GTCCTAACTAAAAATAACAT+AGG + chr5_3:1943651-1943670 Msa0791100:five_prime_UTR 25.0%
!!! CACCTATGTTATTTTTAGTT+AGG - chr5_3:1943656-1943675 None:intergenic 25.0%
!! TCAATTTCTTGTTCTTCTTT+TGG - chr5_3:1943892-1943911 None:intergenic 25.0%
! TTACAAATCCAAAATCTTCA+GGG - chr5_3:1944058-1944077 None:intergenic 25.0%
! ATTACAAATCCAAAATCTTC+AGG - chr5_3:1944059-1944078 None:intergenic 25.0%
!! AAATAGGTTGTTCTTTTGAA+GGG - chr5_3:1944133-1944152 None:intergenic 25.0%
!! AAAATAGGTTGTTCTTTTGA+AGG - chr5_3:1944134-1944153 None:intergenic 25.0%
!!! TTGTTTTGTTGAGTGAAAAT+AGG - chr5_3:1944149-1944168 None:intergenic 25.0%
! CCATGTAAAATATATGCTAT+AGG - chr5_3:1944221-1944240 None:intergenic 25.0%
!! CCTATAGCATATATTTTACA+TGG + chr5_3:1944218-1944237 Msa0791100:five_prime_UTR 25.0%
! TTCCTGTTCTTTATAATTCA+AGG + chr5_3:1944366-1944385 Msa0791100:five_prime_UTR 25.0%
! TCTTATAAAAGGATTTATGC+TGG + chr5_3:1944455-1944474 Msa0791100:five_prime_UTR 25.0%
!!! TTTTGGTGCTTTAATTTGTT+TGG + chr5_3:1944506-1944525 Msa0791100:five_prime_UTR 25.0%
!!! TAATACGCTTTAAAAACTCT+AGG - chr5_3:1944554-1944573 None:intergenic 25.0%
! TCATTCCTTAATTTACTTTC+TGG - chr5_3:1944583-1944602 None:intergenic 25.0%
! GAAATACACACATTTGTATA+TGG + chr5_3:1944715-1944734 Msa0791100:five_prime_UTR 25.0%
!! AATATGCATACGTTTTACAT+TGG + chr5_3:1944745-1944764 Msa0791100:five_prime_UTR 25.0%
! AACATAGTGACATAATAACA+TGG + chr5_3:1944811-1944830 Msa0791100:five_prime_UTR 25.0%
! TATTTGAATGATGACATCAT+TGG + chr5_3:1944844-1944863 Msa0791100:five_prime_UTR 25.0%
!! TTTTTAACGATCTTTGTAGT+TGG + chr5_3:1945324-1945343 Msa0791100:intron 25.0%
! AGTTAGTTGAGTAAAGATAA+AGG + chr5_3:1946042-1946061 Msa0791100:intron 25.0%
! GTTAGTTGAGTAAAGATAAA+GGG + chr5_3:1946043-1946062 Msa0791100:intron 25.0%
! GTAAAATGATGGTATTTCAT+TGG - chr5_3:1946556-1946575 None:intergenic 25.0%
!!! GAAACATTACGAGTTTTAAT+TGG + chr5_3:1946615-1946634 Msa0791100:intron 25.0%
!!! TACGAGTTTTAATTGGAATT+TGG + chr5_3:1946622-1946641 Msa0791100:intron 25.0%
! GAATTCATCTTAGAGTTTAA+TGG - chr5_3:1946686-1946705 None:intergenic 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG - chr5_3:1947026-1947045 None:intergenic 25.0%
! ACAAAATTAATGACCAATCA+AGG + chr5_3:1947031-1947050 Msa0791100:CDS 25.0%
!! TTGGTATCAAAACTTTTATC+TGG - chr5_3:1947289-1947308 None:intergenic 25.0%
!! ATATCATATTAGCAGGTTTT+TGG - chr5_3:1947308-1947327 None:intergenic 25.0%
! CTAATATGATATTGATCACA+TGG + chr5_3:1947316-1947335 Msa0791100:intron 25.0%
!! TTTGTTGTAACTGTATTACA+AGG - chr5_3:1947524-1947543 None:intergenic 25.0%
!!! TTTGTTTTTGTGTGTAAAAC+TGG + chr5_3:1947628-1947647 Msa0791100:intron 25.0%
! TCATTCATCTACATTACTAT+AGG + chr5_3:1947932-1947951 Msa0791100:intron 25.0%
! ACTACAGCATAAAAAAACAT+AGG - chr5_3:1948109-1948128 None:intergenic 25.0%
! AGTAATAATGTATGAATGAG+TGG - chr5_3:1948246-1948265 None:intergenic 25.0%
!! TTATGTTTGATTTATGCAAC+AGG + chr5_3:1948424-1948443 Msa0791100:intron 25.0%
! ACCTATGATTTATAAATGTG+AGG + chr5_3:1948512-1948531 Msa0791100:intron 25.0%
! CCTATGATTTATAAATGTGA+GGG + chr5_3:1948513-1948532 Msa0791100:intron 25.0%
! TCTAATCTGTGTTTCTTTAT+TGG - chr5_3:1948583-1948602 None:intergenic 25.0%
! TTTCAGCATGAATTTGATTA+AGG + chr5_3:1948808-1948827 Msa0791100:CDS 25.0%
! TTCAATTCTTATACAACACT+TGG - chr5_3:1948847-1948866 None:intergenic 25.0%
TTAGATTAGATCAGATGATG+GGG - chr5_3:1943734-1943753 None:intergenic 30.0%
GTTAGATTAGATCAGATGAT+GGG - chr5_3:1943735-1943754 None:intergenic 30.0%
!! GTGATCAGGATATTTTGAAA+GGG - chr5_3:1943798-1943817 None:intergenic 30.0%
!! TGTGATCAGGATATTTTGAA+AGG - chr5_3:1943799-1943818 None:intergenic 30.0%
TAACAAGAGAATTTGTGATC+AGG - chr5_3:1943812-1943831 None:intergenic 30.0%
! TTTCTTGTTCTTCTTTTGGT+AGG - chr5_3:1943888-1943907 None:intergenic 30.0%
!!! AACTAGTTTTTCTTTGTGTG+TGG - chr5_3:1943968-1943987 None:intergenic 30.0%
TGGAATATTTGAAGGTGATA+AGG + chr5_3:1944238-1944257 Msa0791100:five_prime_UTR 30.0%
ATATTTGAAGGTGATAAGGA+AGG + chr5_3:1944242-1944261 Msa0791100:five_prime_UTR 30.0%
! TACACCACATGTTTTTCTTT+TGG + chr5_3:1944277-1944296 Msa0791100:five_prime_UTR 30.0%
!! TTTGGCTAGTCAAGTTTTTA+TGG + chr5_3:1944295-1944314 Msa0791100:five_prime_UTR 30.0%
CTCCTTGAATTATAAAGAAC+AGG - chr5_3:1944371-1944390 None:intergenic 30.0%
CTGTTCTTTATAATTCAAGG+AGG + chr5_3:1944369-1944388 Msa0791100:five_prime_UTR 30.0%
AGCATAGTGGTTCTTATAAA+AGG + chr5_3:1944444-1944463 Msa0791100:five_prime_UTR 30.0%
! AAAACTCTAGGAAGATAAAC+AGG - chr5_3:1944542-1944561 None:intergenic 30.0%
TCAAGCCAGAAAGTAAATTA+AGG + chr5_3:1944575-1944594 Msa0791100:five_prime_UTR 30.0%
! ATTGACTTTGTGAATTGTGA+CGG + chr5_3:1945001-1945020 Msa0791100:five_prime_UTR 30.0%
! GATTTTTCATTACCATCATG+TGG + chr5_3:1945033-1945052 Msa0791100:exon 30.0%
!! AGTTTTATGTTGCAGAGTTA+TGG + chr5_3:1945229-1945248 Msa0791100:intron 30.0%
! GTTTTATGTTGCAGAGTTAT+GGG + chr5_3:1945230-1945249 Msa0791100:intron 30.0%
! TTTTATGTTGCAGAGTTATG+GGG + chr5_3:1945231-1945250 Msa0791100:intron 30.0%
! CTTTTCATCATTTAGACTTG+AGG + chr5_3:1945286-1945305 Msa0791100:intron 30.0%
TTACATCAAATTCTTGCAAC+TGG + chr5_3:1945424-1945443 Msa0791100:intron 30.0%
ATTATATGGATATGATGGCA+TGG + chr5_3:1945459-1945478 Msa0791100:intron 30.0%
GATTATGGCTGTTAGAAATA+TGG + chr5_3:1945549-1945568 Msa0791100:CDS 30.0%
TATCAAAGCAGCAATACTTA+AGG + chr5_3:1945585-1945604 Msa0791100:CDS 30.0%
TCTTACATCAAGATGTTCAA+CGG - chr5_3:1945706-1945725 None:intergenic 30.0%
GAACATCTTGATGTAAGAAA+AGG + chr5_3:1945708-1945727 Msa0791100:intron 30.0%
! CAGTTTTGCCTAAATAAAGA+TGG - chr5_3:1945754-1945773 None:intergenic 30.0%
CATGATCAAGAAAGATAAAC+TGG - chr5_3:1946229-1946248 None:intergenic 30.0%
TTCTTGATCATGTTCATTCA+AGG + chr5_3:1946237-1946256 Msa0791100:intron 30.0%
!! GGGCAATATGTTTGATTTTA+CGG + chr5_3:1946395-1946414 Msa0791100:intron 30.0%
! TGAATAAAAACTCGGTTTGT+TGG - chr5_3:1946422-1946441 None:intergenic 30.0%
TAAAACTCGTAATGTTTCCA+TGG - chr5_3:1946613-1946632 None:intergenic 30.0%
! TCTAAGATGAATTCCTATGT+GGG + chr5_3:1946692-1946711 Msa0791100:intron 30.0%
CTTGATCATTTAGATCAGAA+AGG - chr5_3:1946740-1946759 None:intergenic 30.0%
GATCTAAATGATCAAGAACT+CGG + chr5_3:1946744-1946763 Msa0791100:intron 30.0%
AAACCAATATGTAATTGTGC+AGG + chr5_3:1946878-1946897 Msa0791100:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr5_3:1946907-1946926 Msa0791100:CDS 30.0%
AGGAAAATTGTTAATGTCTC+TGG + chr5_3:1946967-1946986 Msa0791100:CDS 30.0%
! CTATTGGTTATTACCTTGAT+TGG - chr5_3:1947047-1947066 None:intergenic 30.0%
CAATCAAGGTAATAACCAAT+AGG + chr5_3:1947045-1947064 Msa0791100:intron 30.0%
TTTGAACATAGGTTACCTAT+TGG - chr5_3:1947063-1947082 None:intergenic 30.0%
ATACAAAATAACAGCACATC+TGG - chr5_3:1947092-1947111 None:intergenic 30.0%
GTGATCAATATCATATTAGC+AGG - chr5_3:1947315-1947334 None:intergenic 30.0%
!!! AATCGTTTTAACTGCAAACA+TGG - chr5_3:1947444-1947463 None:intergenic 30.0%
AAAAATTAAGAGCGGACATA+TGG + chr5_3:1947483-1947502 Msa0791100:intron 30.0%
! ATTTAGAATGCCATGTCATA+GGG - chr5_3:1947845-1947864 None:intergenic 30.0%
TAGTAAATTACCTTCATCCA+TGG - chr5_3:1948020-1948039 None:intergenic 30.0%
!!! TGTTTTTTTATGCTGTAGTG+TGG + chr5_3:1948110-1948129 Msa0791100:intron 30.0%
GTACAACAAGAAAATCATTC+AGG + chr5_3:1948184-1948203 Msa0791100:intron 30.0%
!!! TCTGATTATTTTGAATTGGG+TGG + chr5_3:1948279-1948298 Msa0791100:intron 30.0%
TTATGCAACAGGTATAATAC+AGG + chr5_3:1948435-1948454 Msa0791100:intron 30.0%
CCCTCACATTTATAAATCAT+AGG - chr5_3:1948516-1948535 None:intergenic 30.0%
ACTTTCTCCTATCTAAATGT+AGG + chr5_3:1948652-1948671 Msa0791100:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG + chr5_3:1948653-1948672 Msa0791100:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG + chr5_3:1948654-1948673 Msa0791100:intron 30.0%
!! GTATTTTTCAGACAACAATG+TGG + chr5_3:1948733-1948752 Msa0791100:CDS 30.0%
! TGATTTGGCTAAGAAACTTT+GGG + chr5_3:1948784-1948803 Msa0791100:CDS 30.0%
!!! AGCACTGCTCATTTTTTTTT+GGG - chr5_3:1948905-1948924 None:intergenic 30.0%
!!! TAGCACTGCTCATTTTTTTT+TGG - chr5_3:1948906-1948925 None:intergenic 30.0%
AAAAAATGAGCAGTGCTATA+TGG + chr5_3:1948908-1948927 Msa0791100:three_prime_UTR 30.0%
!! AAGGACAAATGGTTGGTAAA+GGG - chr5_3:1943703-1943722 None:intergenic 35.0%
TGAAATGAAGGACAAATGGT+TGG - chr5_3:1943710-1943729 None:intergenic 35.0%
GGTTAGATTAGATCAGATGA+TGG - chr5_3:1943736-1943755 None:intergenic 35.0%
! CAGCTAAACAATTGAGTTGT+CGG - chr5_3:1944001-1944020 None:intergenic 35.0%
! GTTTTCATTGGAGCAATCAT+TGG + chr5_3:1944185-1944204 Msa0791100:five_prime_UTR 35.0%
CTAGCCAAAAGAAAAACATG+TGG - chr5_3:1944284-1944303 None:intergenic 35.0%
! GCTAGTCAAGTTTTTATGGA+AGG + chr5_3:1944299-1944318 Msa0791100:five_prime_UTR 35.0%
!!! GAAGGTGTTGCATTTTCAAA+TGG + chr5_3:1944317-1944336 Msa0791100:five_prime_UTR 35.0%
ACAGGAACAAAAGCTCTTAT+TGG - chr5_3:1944353-1944372 None:intergenic 35.0%
! AAGGAGGATTTTCACTATTG+TGG + chr5_3:1944385-1944404 Msa0791100:five_prime_UTR 35.0%
! GGATTTTCACTATTGTGGAT+TGG + chr5_3:1944390-1944409 Msa0791100:five_prime_UTR 35.0%
GTTTAGAGATGAGATTTCCA+AGG + chr5_3:1944412-1944431 Msa0791100:five_prime_UTR 35.0%
AGGAATGATTAGGTAGCTAT+AGG + chr5_3:1944595-1944614 Msa0791100:five_prime_UTR 35.0%
GGAATGATTAGGTAGCTATA+GGG + chr5_3:1944596-1944615 Msa0791100:five_prime_UTR 35.0%
AATAACCAGCAGAAAAGTCA+TGG - chr5_3:1944656-1944675 None:intergenic 35.0%
TATGTTGAAGATGAGATGTG+TGG - chr5_3:1944797-1944816 None:intergenic 35.0%
AAAGTCAATAGTGCAGATCA+TGG - chr5_3:1944990-1945009 None:intergenic 35.0%
TTCTAACAGCCATAATCACA+TGG - chr5_3:1945546-1945565 None:intergenic 35.0%
!!! ATGACGTCAATTTTAGCTGA+GGG - chr5_3:1945616-1945635 None:intergenic 35.0%
! TCGCAGTACCATCTTTATTT+AGG + chr5_3:1945743-1945762 Msa0791100:intron 35.0%
! TAAATTAAGTTAACGGACCC+AGG + chr5_3:1946110-1946129 Msa0791100:intron 35.0%
CCAGAAAACATTACTACTAC+TGG - chr5_3:1946267-1946286 None:intergenic 35.0%
! CCAGTAGTAGTAATGTTTTC+TGG + chr5_3:1946264-1946283 Msa0791100:intron 35.0%
GTAATTGCAAGAAACAATGC+AGG + chr5_3:1946298-1946317 Msa0791100:intron 35.0%
CTGTAGTTCAATGTTGTCTT+TGG - chr5_3:1946350-1946369 None:intergenic 35.0%
!! CTCTAAGATGAATTCCTATG+TGG + chr5_3:1946691-1946710 Msa0791100:intron 35.0%
ACACATATCAGGGAAAGAAA+TGG + chr5_3:1946835-1946854 Msa0791100:intron 35.0%
TGACCTGCACAATTACATAT+TGG - chr5_3:1946884-1946903 None:intergenic 35.0%
! AATTGTTAATGTCTCTGGAG+AGG + chr5_3:1946972-1946991 Msa0791100:CDS 35.0%
GGCTTACACATTTGCATATT+CGG + chr5_3:1946993-1947012 Msa0791100:CDS 35.0%
TACACATTTGCATATTCGGA+AGG + chr5_3:1946997-1947016 Msa0791100:CDS 35.0%
! TCTGGTGATGATTTGAACAT+AGG - chr5_3:1947074-1947093 None:intergenic 35.0%
TTAAAACGATTGTCTCACCA+TGG + chr5_3:1947453-1947472 Msa0791100:intron 35.0%
! CTTAATTTTTCATGCAGCCA+TGG - chr5_3:1947473-1947492 None:intergenic 35.0%
GCTGCATGAAAAATTAAGAG+CGG + chr5_3:1947475-1947494 Msa0791100:intron 35.0%
TACAACAAACAGAGTGCATA+TGG + chr5_3:1947535-1947554 Msa0791100:CDS 35.0%
! TCACTTGTTACATCTTGATC+AGG + chr5_3:1947677-1947696 Msa0791100:intron 35.0%
TTACATCTTGATCAGGATGA+TGG + chr5_3:1947684-1947703 Msa0791100:intron 35.0%
TACATCTTGATCAGGATGAT+GGG + chr5_3:1947685-1947704 Msa0791100:intron 35.0%
GTACAAGATAATAGTTACCG+TGG - chr5_3:1947782-1947801 None:intergenic 35.0%
ATCATTAAAGCCCTATGACA+TGG + chr5_3:1947832-1947851 Msa0791100:intron 35.0%
! CATTTAGAATGCCATGTCAT+AGG - chr5_3:1947846-1947865 None:intergenic 35.0%
ATAACAACGGTAGATAATGC+AGG - chr5_3:1947876-1947895 None:intergenic 35.0%
CATTGTAAAATCCACGATAG+TGG - chr5_3:1947902-1947921 None:intergenic 35.0%
TAATTCTCTTTCTCAGACCA+TGG + chr5_3:1948000-1948019 Msa0791100:intron 35.0%
CGTGAATTAAGAAACGTAGT+TGG - chr5_3:1948076-1948095 None:intergenic 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG + chr5_3:1948288-1948307 Msa0791100:intron 35.0%
TGGTTTGATTGTTTGCACAT+TGG + chr5_3:1948308-1948327 Msa0791100:intron 35.0%
ACAGGTATAATACAGGTGAT+TGG + chr5_3:1948442-1948461 Msa0791100:intron 35.0%
CAGGTATAATACAGGTGATT+GGG + chr5_3:1948443-1948462 Msa0791100:intron 35.0%
TGTGATGAAAAATGTTCAGC+AGG + chr5_3:1948471-1948490 Msa0791100:CDS 35.0%
GGGTCGTGTCAAATAAATAT+TGG + chr5_3:1948533-1948552 Msa0791100:intron 35.0%
TTCTCCTATCTAAATGTAGG+GGG + chr5_3:1948655-1948674 Msa0791100:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG + chr5_3:1948783-1948802 Msa0791100:CDS 35.0%
CAGCATGAATTTGATTAAGG+AGG + chr5_3:1948811-1948830 Msa0791100:CDS 35.0%
!! AAATGGTTGGTAAAGGGGTA+AGG - chr5_3:1943697-1943716 None:intergenic 40.0%
!! AGGACAAATGGTTGGTAAAG+GGG - chr5_3:1943702-1943721 None:intergenic 40.0%
!! GAAGGACAAATGGTTGGTAA+AGG - chr5_3:1943704-1943723 None:intergenic 40.0%
GGGTTGAAATGAAGGACAAA+TGG - chr5_3:1943714-1943733 None:intergenic 40.0%
!! AGATGATGGGGTTGAAATGA+AGG - chr5_3:1943722-1943741 None:intergenic 40.0%
GAGAGAGGAGTAGAAAGATA+AGG - chr5_3:1943757-1943776 None:intergenic 40.0%
!!! GTTGAGAGGTTTTTTGAGAG+AGG - chr5_3:1943772-1943791 None:intergenic 40.0%
!! TTTTGAAAGGGAACGTTGAG+AGG - chr5_3:1943786-1943805 None:intergenic 40.0%
GAGCTACACACAAAAATGTC+TGG + chr5_3:1943832-1943851 Msa0791100:five_prime_UTR 40.0%
CTACACACAAAAATGTCTGG+TGG + chr5_3:1943835-1943854 Msa0791100:five_prime_UTR 40.0%
ACAAAAATGTCTGGTGGAGT+TGG + chr5_3:1943841-1943860 Msa0791100:five_prime_UTR 40.0%
! AATTGAGTTGTCGGAATGAG+AGG - chr5_3:1943992-1944011 None:intergenic 40.0%
!!! GTTGTTGTTTTATCAGCCAG+TGG + chr5_3:1944023-1944042 Msa0791100:five_prime_UTR 40.0%
!! ATGGTTAGCCCTGAAGATTT+TGG + chr5_3:1944047-1944066 Msa0791100:five_prime_UTR 40.0%
!! TGTTCTTTTGAAGGGTGAGA+TGG - chr5_3:1944125-1944144 None:intergenic 40.0%
AGAGATGAGATTTCCAAGGT+TGG + chr5_3:1944416-1944435 Msa0791100:five_prime_UTR 40.0%
! CTGTGGCTAATATGGCTTTT+TGG + chr5_3:1944489-1944508 Msa0791100:five_prime_UTR 40.0%
! TTGAACCATGACTTTTCTGC+TGG + chr5_3:1944648-1944667 Msa0791100:five_prime_UTR 40.0%
CATTGGAATGCGTTCTTATC+AGG + chr5_3:1944762-1944781 Msa0791100:five_prime_UTR 40.0%
GAAATCCCTTTCTTCCTGAA+TGG - chr5_3:1945059-1945078 None:intergenic 40.0%
TTCAGGAAGAAAGGGATTTC+TGG + chr5_3:1945059-1945078 Msa0791100:CDS 40.0%
! AAAGGGATTTCTGGATTCTC+AGG + chr5_3:1945068-1945087 Msa0791100:CDS 40.0%
! AAGGGATTTCTGGATTCTCA+GGG + chr5_3:1945069-1945088 Msa0791100:CDS 40.0%
ACTGCTGAACAAGTTACTCA+TGG + chr5_3:1945098-1945117 Msa0791100:CDS 40.0%
ACTCATGGAATTGATGCAAC+TGG + chr5_3:1945113-1945132 Msa0791100:CDS 40.0%
CTACTATTCAACAAAGGGCA+TGG - chr5_3:1945211-1945230 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG + chr5_3:1945374-1945393 Msa0791100:intron 40.0%
!!! CATGACGTCAATTTTAGCTG+AGG - chr5_3:1945617-1945636 None:intergenic 40.0%
CTCAGCTAAAATTGACGTCA+TGG + chr5_3:1945615-1945634 Msa0791100:CDS 40.0%
GGAGTTAGATCTCAGTTCAA+TGG + chr5_3:1945636-1945655 Msa0791100:CDS 40.0%
AAGACCAGAGGAGTTGAATT+CGG - chr5_3:1945683-1945702 None:intergenic 40.0%
TGTAAGAAAAGGAACCGACA+TGG + chr5_3:1945719-1945738 Msa0791100:intron 40.0%
GATAAAGGGCTAACTTGACA+CGG + chr5_3:1946057-1946076 Msa0791100:intron 40.0%
AACTGGAACACAGATACTCA+TGG - chr5_3:1946212-1946231 None:intergenic 40.0%
TGTCTTTGGACAGCATGAAA+GGG - chr5_3:1946336-1946355 None:intergenic 40.0%
TTGTCTTTGGACAGCATGAA+AGG - chr5_3:1946337-1946356 None:intergenic 40.0%
CACAAACCACTTAGGTATGT+GGG + chr5_3:1946375-1946394 Msa0791100:intron 40.0%
ATATTGCCCACATACCTAAG+TGG - chr5_3:1946384-1946403 None:intergenic 40.0%
ACACACACACACACATATCA+GGG + chr5_3:1946825-1946844 Msa0791100:intron 40.0%
GCACACGAAAGTAAGAAAGA+AGG + chr5_3:1946947-1946966 Msa0791100:intron 40.0%
! TGGGAAATCGGCTTTACTAT+TGG + chr5_3:1947197-1947216 Msa0791100:intron 40.0%
! CATCGTTATCAGCAGGTTTT+TGG - chr5_3:1947368-1947387 None:intergenic 40.0%
! CAAAAACCTGCTGATAACGA+TGG + chr5_3:1947366-1947385 Msa0791100:intron 40.0%
CTCATTTCAACGAGTACTAC+AGG - chr5_3:1947402-1947421 None:intergenic 40.0%
CTGTAGTACTCGTTGAAATG+AGG + chr5_3:1947400-1947419 Msa0791100:intron 40.0%
ACATCTTGATCAGGATGATG+GGG + chr5_3:1947686-1947705 Msa0791100:intron 40.0%
ACTGTGAATTCTCTTCATCC+AGG + chr5_3:1947717-1947736 Msa0791100:CDS 40.0%
AGATTGGTGAGAATGATTCC+TGG - chr5_3:1947738-1947757 None:intergenic 40.0%
! ACGATAGTGGCACATAACAA+CGG - chr5_3:1947889-1947908 None:intergenic 40.0%
GAATGAGTGGTGAAAGTTAG+TGG - chr5_3:1948233-1948252 None:intergenic 40.0%
CACTAATTCCCTTCACTTGT+GGG - chr5_3:1948709-1948728 None:intergenic 40.0%
CAAAAGAGAATCACAGGGAA+GGG + chr5_3:1948757-1948776 Msa0791100:CDS 40.0%
! TGTTTTATCAGCCAGTGGCA+TGG + chr5_3:1944028-1944047 Msa0791100:five_prime_UTR 45.0%
ACTATGCTCTTCACCAACCT+TGG - chr5_3:1944432-1944451 None:intergenic 45.0%
!! AAGGTTGGTGAAGAGCATAG+TGG + chr5_3:1944431-1944450 Msa0791100:five_prime_UTR 45.0%
!! AGCACTTGCTGTGGCTAATA+TGG + chr5_3:1944481-1944500 Msa0791100:five_prime_UTR 45.0%
TTACCATCATGTGGCCATTC+AGG + chr5_3:1945042-1945061 Msa0791100:exon 45.0%
ATGTGGCCATTCAGGAAGAA+AGG + chr5_3:1945050-1945069 Msa0791100:CDS 45.0%
TGTGGCCATTCAGGAAGAAA+GGG + chr5_3:1945051-1945070 Msa0791100:CDS 45.0%
GGATATGATGGCATGGTAAC+AGG + chr5_3:1945466-1945485 Msa0791100:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG - chr5_3:1945497-1945516 None:intergenic 45.0%
! TGTGACCTCATTGTTGTTCG+AGG + chr5_3:1945931-1945950 Msa0791100:intron 45.0%
! GTGACCTCATTGTTGTTCGA+GGG + chr5_3:1945932-1945951 Msa0791100:intron 45.0%
TAGACCCTCGAACAACAATG+AGG - chr5_3:1945939-1945958 None:intergenic 45.0%
CAGTTTGCCACAAACCACTT+AGG + chr5_3:1946367-1946386 Msa0791100:CDS 45.0%
CCACATACCTAAGTGGTTTG+TGG - chr5_3:1946377-1946396 None:intergenic 45.0%
CCACAAACCACTTAGGTATG+TGG + chr5_3:1946374-1946393 Msa0791100:intron 45.0%
AGAGAAAAGGAGACATGCAC+TGG + chr5_3:1946503-1946522 Msa0791100:intron 45.0%
!! AGTTACAAAGGGTGCTTCCA+TGG + chr5_3:1946593-1946612 Msa0791100:intron 45.0%
GTGTGTGTGTGTAGTGAAGT+AGG - chr5_3:1946813-1946832 None:intergenic 45.0%
CACACACACACACACATATC+AGG + chr5_3:1946824-1946843 Msa0791100:intron 45.0%
AAAGAGACTAGCACACCTTG+AGG - chr5_3:1947609-1947628 None:intergenic 45.0%
ACCAATCTTTCCCGCCATAT+GGG + chr5_3:1947750-1947769 Msa0791100:CDS 45.0%
! TACCGTGGATTACACCCATA+TGG - chr5_3:1947767-1947786 None:intergenic 45.0%
! GTTGTTATGTGCCACTATCG+TGG + chr5_3:1947888-1947907 Msa0791100:intron 45.0%
CTTTCTCAGACCATGGATGA+AGG + chr5_3:1948007-1948026 Msa0791100:intron 45.0%
! GTGAAAGTTAGTGGACAGAC+TGG - chr5_3:1948224-1948243 None:intergenic 45.0%
CAATGCTACATAGCAGGTTG+TGG - chr5_3:1948684-1948703 None:intergenic 45.0%
CCACTAATTCCCTTCACTTG+TGG - chr5_3:1948710-1948729 None:intergenic 45.0%
CCACAAGTGAAGGGAATTAG+TGG + chr5_3:1948707-1948726 Msa0791100:CDS 45.0%
TGTGGCCAAAAGAGAATCAC+AGG + chr5_3:1948751-1948770 Msa0791100:CDS 45.0%
GTGGCCAAAAGAGAATCACA+GGG + chr5_3:1948752-1948771 Msa0791100:CDS 45.0%
! CCTTCCCTGTGATTCTCTTT+TGG - chr5_3:1948759-1948778 None:intergenic 45.0%
CCAAAAGAGAATCACAGGGA+AGG + chr5_3:1948756-1948775 Msa0791100:CDS 45.0%
!! GTTTTAACCCACGTCTCCAA+TGG + chr5_3:1948990-1949009 Msa0791100:three_prime_UTR 45.0%
!! AAATGAAAAAAATAAAAAAA+TGG - chr5_3:1945183-1945202 None:intergenic 5.0%
TGGTAAAGGGGTAAGGTTCG+TGG - chr5_3:1943690-1943709 None:intergenic 50.0%
AGGCTAATGTCACAGCCAGT+TGG - chr5_3:1943868-1943887 None:intergenic 50.0%
CTTCCTGAATGGCCACATGA+TGG - chr5_3:1945048-1945067 None:intergenic 50.0%
GGTCTCACTGCTATTGTCAC+TGG + chr5_3:1945134-1945153 Msa0791100:CDS 50.0%
ATGGTAACAGGAGCAACCAG+TGG + chr5_3:1945478-1945497 Msa0791100:intron 50.0%
ACAGGAGCAACCAGTGGTAT+TGG + chr5_3:1945484-1945503 Msa0791100:intron 50.0%
GCGTGGTGTCCATGTGATTA+TGG + chr5_3:1945534-1945553 Msa0791100:CDS 50.0%
GCATCCGAATTCAACTCCTC+TGG + chr5_3:1945676-1945695 Msa0791100:CDS 50.0%
GATGTTCAACGGAAGACCAG+AGG - chr5_3:1945695-1945714 None:intergenic 50.0%
GATGGTACTGCGATCCATGT+CGG - chr5_3:1945736-1945755 None:intergenic 50.0%
! TAAGTTAACGGACCCAGGTG+CGG + chr5_3:1946115-1946134 Msa0791100:intron 50.0%
TAAAAGGCGAATCCGCACCT+GGG - chr5_3:1946130-1946149 None:intergenic 50.0%
ATAAAAGGCGAATCCGCACC+TGG - chr5_3:1946131-1946150 None:intergenic 50.0%
CATCACAGTTGCTCCCACAT+AGG - chr5_3:1946708-1946727 None:intergenic 50.0%
!! TTTCGGTGTTCTGCGAGTCT+TGG + chr5_3:1947255-1947274 Msa0791100:intron 50.0%
ACGACTCCATCGTTATCAGC+AGG - chr5_3:1947375-1947394 None:intergenic 50.0%
!! TCTTGATCAGGATGATGGGG+TGG + chr5_3:1947689-1947708 Msa0791100:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG + chr5_3:1947749-1947768 Msa0791100:CDS 50.0%
! ACCCATATGGCGGGAAAGAT+TGG - chr5_3:1947754-1947773 None:intergenic 50.0%
! GTGGATTACACCCATATGGC+GGG - chr5_3:1947763-1947782 None:intergenic 50.0%
! CGTGGATTACACCCATATGG+CGG - chr5_3:1947764-1947783 None:intergenic 50.0%
CGCCATATGGGTGTAATCCA+CGG + chr5_3:1947762-1947781 Msa0791100:CDS 50.0%
GCTGCCCCCTACATTTAGAT+AGG - chr5_3:1948662-1948681 None:intergenic 50.0%
TGGGTGCAATGCTACATAGC+AGG - chr5_3:1948690-1948709 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG + chr5_3:1948697-1948716 Msa0791100:CDS 50.0%
GCATTGCACCCACAAGTGAA+GGG + chr5_3:1948698-1948717 Msa0791100:CDS 50.0%
TCTGGTGGAGTTGGACCAAC+TGG + chr5_3:1943850-1943869 Msa0791100:five_prime_UTR 55.0%
TTCAGGGCTAACCATGCCAC+TGG - chr5_3:1944042-1944061 None:intergenic 55.0%
!! TGCTGGAAGAGCACTTGCTG+TGG + chr5_3:1944472-1944491 Msa0791100:five_prime_UTR 55.0%
ACGCGTGTTCTTGCTTTGCG+TGG + chr5_3:1945517-1945536 Msa0791100:CDS 55.0%
! GAGGCGTCTTGCAAGCTCAT+TGG - chr5_3:1947590-1947609 None:intergenic 55.0%
TGAGCTTGCAAGACGCCTCA+AGG + chr5_3:1947591-1947610 Msa0791100:CDS 55.0%
! ACAGGGAAGGGACGCTGATT+TGG + chr5_3:1948769-1948788 Msa0791100:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1943604 1949018 1943604 ID=Msa0791100;Name=Msa0791100
chr5_3 mRNA 1943604 1949018 1943604 ID=Msa0791100-mRNA-1;Parent=Msa0791100;Name=Msa0791100-mRNA-1;_AED=0.34;_eAED=0.34;_QI=1446|0.87|0.77|1|0.5|0.77|9|180|313
chr5_3 exon 1943604 1945155 1943604 ID=Msa0791100-mRNA-1:exon:759;Parent=Msa0791100-mRNA-1
chr5_3 exon 1945488 1945719 1945488 ID=Msa0791100-mRNA-1:exon:760;Parent=Msa0791100-mRNA-1
chr5_3 exon 1946309 1946388 1946309 ID=Msa0791100-mRNA-1:exon:761;Parent=Msa0791100-mRNA-1
chr5_3 exon 1946900 1946956 1946900 ID=Msa0791100-mRNA-1:exon:762;Parent=Msa0791100-mRNA-1
chr5_3 exon 1946962 1947052 1946962 ID=Msa0791100-mRNA-1:exon:763;Parent=Msa0791100-mRNA-1
chr5_3 exon 1947534 1947612 1947534 ID=Msa0791100-mRNA-1:exon:764;Parent=Msa0791100-mRNA-1
chr5_3 exon 1947699 1947783 1947699 ID=Msa0791100-mRNA-1:exon:765;Parent=Msa0791100-mRNA-1
chr5_3 exon 1948446 1948492 1948446 ID=Msa0791100-mRNA-1:exon:766;Parent=Msa0791100-mRNA-1
chr5_3 exon 1948674 1949018 1948674 ID=Msa0791100-mRNA-1:exon:767;Parent=Msa0791100-mRNA-1
chr5_3 five_prime_UTR 1943604 1945049 1943604 ID=Msa0791100-mRNA-1:five_prime_utr;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1945050 1945155 1945050 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1945488 1945719 1945488 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1946309 1946388 1946309 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1946900 1946956 1946900 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1946962 1947052 1946962 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1947534 1947612 1947534 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1947699 1947783 1947699 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1948446 1948492 1948446 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 CDS 1948674 1948838 1948674 ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3 three_prime_UTR 1948839 1949018 1948839 ID=Msa0791100-mRNA-1:three_prime_utr;Parent=Msa0791100-mRNA-1
Gene Sequence

>Msa0791100

ATGTGGCCATTCAGGAAGAAAGGGATTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGTCTCACTGCTATTGTCACTGGAGCAACCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATATGGTTGCTGCTAATGATATCAAAGCAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGACGTCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCCGAATTCAACTCCTCTGGTCTTCCGTTGAACATCTTGATAAACAATGCAGGAATCATGTCATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGACGAAAACAGCACACGAAAAAAGAAGGAAAATTGTTAATGTCTCTGGAGAGGCTTACACATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGTTACAACAAACAGAGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGATGATGGGGTGGATATCACTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTAATCCACGGTATAATACAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGACAACAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG
Protein sequence

>Msa0791100

MWPFRKKGISGFSGSSTAEQVTHGIDATGLTAIVTGATSGIGVETTRVLALRGVHVIMAVRNMVAANDIKAAILKEIPSAKIDVMELDLSSMESVKKFASEFNSSGLPLNILINNAGIMSCPFMLSKDNIELQFATNHLGHFLLTNLLLDTMTKTAHEKRRKIVNVSGEAYTFAYSEGIRFDKINDQSSYNKQSAYGQSKLANILHANELARRLKDDGVDITVNSLHPGIILTNLSRHMGVIHGIIQVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE*