AlfalfaGEDB | Msa0791100

M. sativa cultivar zhongmu-4 / Msa0791100

KEGG: K11153|K19329
GO: -
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791100	XP_013469651.1	93.016	315	20	1	1	313	1	315	0.0	607

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791100	sp\|Q6RVV4\|TIC32_PEA	77.848	316	67	2	1	313	1	316	0.0	516

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791100	A0A072VNU0	93.016	315	20	1	1	313	1	315	0.0	607

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015300	Msa0791100	0.813607	2.349231e-51	-8.615850e-47
Msa0047980	Msa0791100	0.804710	1.895721e-49	-8.615850e-47
Msa0260210	Msa0791100	0.801297	9.624160e-49	-8.615850e-47
Msa0274350	Msa0791100	0.801438	9.004373e-49	-8.615850e-47
Msa0306780	Msa0791100	0.887401	1.474331e-72	-8.615850e-47
Msa0343810	Msa0791100	0.804918	1.715212e-49	-8.615850e-47
Msa0426330	Msa0791100	0.822658	2.105912e-53	-8.615850e-47
Msa0585900	Msa0791100	0.803581	3.255339e-49	-8.615850e-47
Msa0660300	Msa0791100	0.807294	5.422017e-50	-8.615850e-47
Msa0690160	Msa0791100	0.824190	9.231742e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791100	MtrunA17_Chr1g0202931	93.016	315	20	1	1	313	1	315	0.0	607
Msa0791100	MtrunA17_Chr1g0202891	87.937	315	36	1	1	313	1	315	0.0	566
Msa0791100	MtrunA17_Chr1g0202871	80.952	315	58	1	1	313	1	315	0.0	528
Msa0791100	MtrunA17_Chr1g0202861	77.143	315	70	1	1	313	42	356	0.0	515
Msa0791100	MtrunA17_Chr8g0386971	69.775	311	92	1	1	309	1	311	7.09e-161	451
Msa0791100	MtrunA17_Chr6g0470321	70.033	307	87	3	10	311	18	324	1.99e-152	430
Msa0791100	MtrunA17_Chr6g0470501	69.055	307	90	3	10	311	37	343	4.15e-152	430
Msa0791100	MtrunA17_Chr1g0182541	58.361	305	125	1	8	310	13	317	7.48e-128	367
Msa0791100	MtrunA17_Chr7g0262941	58.497	306	124	2	8	310	13	318	1.20e-126	364
Msa0791100	MtrunA17_Chr4g0058731	45.631	309	162	3	8	310	24	332	1.38e-85	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0791100	AT4G11410.1	68.889	315	96	1	1	313	1	315	2.44e-160	450
Msa0791100	AT4G23420.1	68.269	312	96	2	1	309	1	312	4.53e-159	447
Msa0791100	AT4G23420.2	68.269	312	96	2	1	309	1	312	4.53e-159	447
Msa0791100	AT4G23430.2	66.139	316	104	2	1	313	1	316	4.25e-158	444
Msa0791100	AT4G23420.3	67.419	310	98	2	3	309	20	329	1.45e-155	438
Msa0791100	AT4G23430.1	65.823	316	103	3	1	313	1	314	6.40e-155	436
Msa0791100	AT4G23430.4	63.291	316	103	3	1	313	1	306	3.26e-148	419
Msa0791100	AT4G23430.3	62.975	316	102	4	1	313	1	304	6.10e-145	410
Msa0791100	AT4G23420.5	68.321	262	80	2	1	259	1	262	2.23e-130	372
Msa0791100	AT4G23420.4	73.418	237	61	1	1	235	1	237	2.18e-128	367

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Find 137 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTAGGAAGATAAAC+AGG	0.453140	5_3:-1944539	None:intergenic
AAAGGGATTTCTGGATTCTC+AGG	0.351168	5_3:+1945068	Msa0791100:CDS
AAAGTCAATAGTGCAGATCA+TGG	0.548372	5_3:-1944987	None:intergenic
AAATGGTTGGTAAAGGGGTA+AGG	0.536543	5_3:-1943694	None:intergenic
AACATAGTGACATAATAACA+TGG	0.690821	5_3:+1944811	Msa0791100:five_prime_UTR
AAGACCAGAGGAGTTGAATT+CGG	0.463073	5_3:-1945680	None:intergenic
AAGGACAAATGGTTGGTAAA+GGG	0.425534	5_3:-1943700	None:intergenic
AAGGGATTTCTGGATTCTCA+GGG	0.585889	5_3:+1945069	Msa0791100:CDS
AAGGTTGGTGAAGAGCATAG+TGG	0.672560	5_3:+1944431	Msa0791100:five_prime_UTR
AAGTAAATTAAGGAATGATT+AGG	0.437346	5_3:+1944585	Msa0791100:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGATTAGATCAGATGATG+GGG	-	chr5_3:1943734-1943753	None:intergenic	30.0%
GTTAGATTAGATCAGATGAT+GGG	-	chr5_3:1943735-1943754	None:intergenic	30.0%
TAACAAGAGAATTTGTGATC+AGG	-	chr5_3:1943812-1943831	None:intergenic	30.0%
TGGAATATTTGAAGGTGATA+AGG	+	chr5_3:1944238-1944257	Msa0791100:five_prime_UTR	30.0%
ATATTTGAAGGTGATAAGGA+AGG	+	chr5_3:1944242-1944261	Msa0791100:five_prime_UTR	30.0%
CTCCTTGAATTATAAAGAAC+AGG	-	chr5_3:1944371-1944390	None:intergenic	30.0%
CTGTTCTTTATAATTCAAGG+AGG	+	chr5_3:1944369-1944388	Msa0791100:five_prime_UTR	30.0%
AGCATAGTGGTTCTTATAAA+AGG	+	chr5_3:1944444-1944463	Msa0791100:five_prime_UTR	30.0%
TCAAGCCAGAAAGTAAATTA+AGG	+	chr5_3:1944575-1944594	Msa0791100:five_prime_UTR	30.0%
TTACATCAAATTCTTGCAAC+TGG	+	chr5_3:1945424-1945443	Msa0791100:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	1943604	1949018	1943604	ID=Msa0791100;Name=Msa0791100
chr5_3	mRNA	1943604	1949018	1943604	ID=Msa0791100-mRNA-1;Parent=Msa0791100;Name=Msa0791100-mRNA-1;_AED=0.34;_eAED=0.34;_QI=1446\|0.87\|0.77\|1\|0.5\|0.77\|9\|180\|313
chr5_3	exon	1943604	1945155	1943604	ID=Msa0791100-mRNA-1:exon:759;Parent=Msa0791100-mRNA-1
chr5_3	exon	1945488	1945719	1945488	ID=Msa0791100-mRNA-1:exon:760;Parent=Msa0791100-mRNA-1
chr5_3	exon	1946309	1946388	1946309	ID=Msa0791100-mRNA-1:exon:761;Parent=Msa0791100-mRNA-1
chr5_3	exon	1946900	1946956	1946900	ID=Msa0791100-mRNA-1:exon:762;Parent=Msa0791100-mRNA-1
chr5_3	exon	1946962	1947052	1946962	ID=Msa0791100-mRNA-1:exon:763;Parent=Msa0791100-mRNA-1
chr5_3	exon	1947534	1947612	1947534	ID=Msa0791100-mRNA-1:exon:764;Parent=Msa0791100-mRNA-1
chr5_3	exon	1947699	1947783	1947699	ID=Msa0791100-mRNA-1:exon:765;Parent=Msa0791100-mRNA-1
chr5_3	exon	1948446	1948492	1948446	ID=Msa0791100-mRNA-1:exon:766;Parent=Msa0791100-mRNA-1
chr5_3	exon	1948674	1949018	1948674	ID=Msa0791100-mRNA-1:exon:767;Parent=Msa0791100-mRNA-1
chr5_3	five_prime_UTR	1943604	1945049	1943604	ID=Msa0791100-mRNA-1:five_prime_utr;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1945050	1945155	1945050	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1945488	1945719	1945488	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1946309	1946388	1946309	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1946900	1946956	1946900	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1946962	1947052	1946962	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1947534	1947612	1947534	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1947699	1947783	1947699	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1948446	1948492	1948446	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	CDS	1948674	1948838	1948674	ID=Msa0791100-mRNA-1:cds;Parent=Msa0791100-mRNA-1
chr5_3	three_prime_UTR	1948839	1949018	1948839	ID=Msa0791100-mRNA-1:three_prime_utr;Parent=Msa0791100-mRNA-1

Gene Sequence

>Msa0791100

ATGTGGCCATTCAGGAAGAAAGGGATTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGTCTCACTGCTATTGTCACTGGAGCAACCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATATGGTTGCTGCTAATGATATCAAAGCAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGACGTCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCCGAATTCAACTCCTCTGGTCTTCCGTTGAACATCTTGATAAACAATGCAGGAATCATGTCATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGACGAAAACAGCACACGAAAAAAGAAGGAAAATTGTTAATGTCTCTGGAGAGGCTTACACATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGTTACAACAAACAGAGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGATGATGGGGTGGATATCACTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTAATCCACGGTATAATACAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGACAACAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG

Protein sequence

>Msa0791100

MWPFRKKGISGFSGSSTAEQVTHGIDATGLTAIVTGATSGIGVETTRVLALRGVHVIMAVRNMVAANDIKAAILKEIPSAKIDVMELDLSSMESVKKFASEFNSSGLPLNILINNAGIMSCPFMLSKDNIELQFATNHLGHFLLTNLLLDTMTKTAHEKRRKIVNVSGEAYTFAYSEGIRFDKINDQSSYNKQSAYGQSKLANILHANELARRLKDDGVDITVNSLHPGIILTNLSRHMGVIHGIIQVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE*