Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155230 | XP_024627166.1 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155230 | sp|Q29Q28|UTR2_ARATH | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155230 | A2Q3P6 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047980 | Msa1155230 | 0.801638 | 8.192646e-49 | -8.615850e-47 |
| Msa0072170 | Msa1155230 | 0.821244 | 4.475836e-53 | -8.615850e-47 |
| Msa0091570 | Msa1155230 | 0.802089 | 6.619474e-49 | -8.615850e-47 |
| Msa0120540 | Msa1155230 | 0.819390 | 1.190972e-52 | -8.615850e-47 |
| Msa0635380 | Msa1155230 | 0.815136 | 1.079175e-51 | -8.615850e-47 |
| Msa0638540 | Msa1155230 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0643320 | Msa1155230 | 0.815842 | 7.513568e-52 | -8.615850e-47 |
| Msa0681800 | Msa1155230 | 0.805440 | 1.333697e-49 | -8.615850e-47 |
| Msa0683140 | Msa1155230 | 0.817924 | 2.561874e-52 | -8.615850e-47 |
| Msa0683600 | Msa1155230 | 0.808182 | 3.511483e-50 | -8.615850e-47 |
| Msa0692110 | Msa1155230 | 0.801685 | 8.014285e-49 | -8.615850e-47 |
| Msa0705820 | Msa1155230 | 0.806962 | 6.376165e-50 | -8.615850e-47 |
| Msa0789020 | Msa1155230 | 0.807549 | 4.787565e-50 | -8.615850e-47 |
| Msa0791100 | Msa1155230 | 0.841637 | 4.210905e-58 | -8.615850e-47 |
| Msa0792090 | Msa1155230 | 0.825922 | 3.599583e-54 | -8.615850e-47 |
| Msa0826190 | Msa1155230 | 0.809220 | 2.107275e-50 | -8.615850e-47 |
| Msa0171980 | Msa1155230 | 0.808735 | 2.676135e-50 | -8.615850e-47 |
| Msa0190120 | Msa1155230 | 0.804629 | 1.970599e-49 | -8.615850e-47 |
| Msa1027700 | Msa1155230 | 0.936663 | 1.210704e-97 | -8.615850e-47 |
| Msa1066270 | Msa1155230 | 0.917827 | 3.302653e-86 | -8.615850e-47 |
| Msa1093100 | Msa1155230 | 0.804914 | 1.718517e-49 | -8.615850e-47 |
| Msa0306780 | Msa1155230 | 0.816928 | 4.294466e-52 | -8.615850e-47 |
| Msa1155230 | Msa1224810 | 0.827538 | 1.480761e-54 | -8.615850e-47 |
| Msa1155230 | Msa1267260 | 0.822141 | 2.776644e-53 | -8.615850e-47 |
| Msa1155230 | Msa1431040 | 0.807005 | 6.244544e-50 | -8.615850e-47 |
| Msa0546300 | Msa1155230 | 0.808702 | 2.719903e-50 | -8.615850e-47 |
| Msa0602370 | Msa1155230 | 0.816527 | 5.281028e-52 | -8.615850e-47 |
| Msa0881030 | Msa1155230 | 0.804178 | 2.446594e-49 | -8.615850e-47 |
| Msa0947800 | Msa1155230 | 0.808762 | 2.641524e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155230 | MtrunA17_Chr7g0246821 | 98.061 | 361 | 4 | 2 | 1 | 359 | 1 | 360 | 0.0 | 717 |
| Msa1155230 | MtrunA17_Chr5g0416331 | 24.756 | 307 | 200 | 9 | 27 | 310 | 17 | 315 | 1.36e-17 | 82.8 |
| Msa1155230 | MtrunA17_Chr2g0327761 | 24.576 | 236 | 168 | 4 | 103 | 331 | 114 | 346 | 2.54e-14 | 73.2 |
| Msa1155230 | MtrunA17_Chr4g0030811 | 26.160 | 237 | 163 | 6 | 103 | 331 | 117 | 349 | 3.07e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155230 | AT4G23010.1 | 78.711 | 357 | 63 | 1 | 3 | 359 | 2 | 345 | 0.0 | 559 |
| Msa1155230 | AT1G12600.1 | 79.050 | 358 | 63 | 3 | 2 | 359 | 4 | 349 | 0.0 | 556 |
| Msa1155230 | AT4G23010.2 | 75.134 | 374 | 63 | 2 | 3 | 359 | 2 | 362 | 0.0 | 550 |
| Msa1155230 | AT4G23010.3 | 69.554 | 404 | 63 | 2 | 3 | 359 | 2 | 392 | 0.0 | 537 |
| Msa1155230 | AT1G14360.1 | 24.620 | 329 | 211 | 10 | 27 | 332 | 17 | 331 | 7.01e-17 | 80.9 |
| Msa1155230 | AT2G02810.1 | 26.568 | 271 | 174 | 8 | 26 | 276 | 16 | 281 | 3.59e-16 | 79.0 |
| Msa1155230 | AT3G46180.1 | 24.756 | 307 | 189 | 10 | 66 | 347 | 57 | 346 | 3.43e-14 | 73.2 |
| Msa1155230 | AT5G59740.1 | 26.545 | 275 | 170 | 9 | 66 | 315 | 56 | 323 | 5.91e-13 | 69.7 |
Find 87 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCATGTTGTTCTGTTAA+TGG | 0.102094 | 7_4:-43123036 | None:intergenic |
| CTGTTTCTGATTTACCTTAA+TGG | 0.191716 | 7_4:+43120800 | Msa1155230:CDS |
| GAAGCAATGGCTACATTTAT+AGG | 0.201415 | 7_4:+43122578 | Msa1155230:CDS |
| GTCTCTCTGAGAAGTATTTA+AGG | 0.206804 | 7_4:-43123133 | None:intergenic |
| TAAATGAATTTATATCTAAA+AGG | 0.234779 | 7_4:-43123392 | None:intergenic |
| TGTTCGTCTGGATTCTTCTT+TGG | 0.266789 | 7_4:+43120128 | Msa1155230:CDS |
| GCTTGCTTGTGAAACCATTA+AGG | 0.274635 | 7_4:-43120814 | None:intergenic |
| CAATTTCTCATTTGTTCGTC+TGG | 0.276606 | 7_4:+43120116 | Msa1155230:CDS |
| TGGCTTAACAAAGGGTTCTT+TGG | 0.276678 | 7_4:+43120895 | Msa1155230:CDS |
| TTGATCACCTGTGTGGTATC+AGG | 0.277949 | 7_4:-43121817 | None:intergenic |
| TTCAGGAATATGTGTATAAC+AGG | 0.287196 | 7_4:+43120621 | Msa1155230:intron |
| GATAACCGGTGCTTTGGTTA+TGG | 0.297053 | 7_4:+43121750 | Msa1155230:CDS |
| CTGTAGTGGCAGCACCAAAA+AGG | 0.297504 | 7_4:-43122628 | None:intergenic |
| ACACCAACAACACTGAAATT+AGG | 0.324279 | 7_4:-43121721 | None:intergenic |
| TCTTCTCAGACCAGGAATAA+AGG | 0.336739 | 7_4:-43121614 | None:intergenic |
| ATAATGGGTGCCTTTATTCC+TGG | 0.337021 | 7_4:+43121604 | Msa1155230:CDS |
| TTAGCTTAAAATGCTTCTAA+TGG | 0.341063 | 7_4:+43119940 | Msa1155230:five_prime_UTR |
| GAACAGGGTCGTAGTTTGTT+TGG | 0.348804 | 7_4:+43120062 | Msa1155230:CDS |
| GCTTGCTTAGACTAATAAAA+AGG | 0.351637 | 7_4:+43119858 | Msa1155230:five_prime_UTR |
| GAAGTATTTAAGGCTCTCTT+AGG | 0.362841 | 7_4:-43123123 | None:intergenic |
| AAAGATGAAGAAAGAAGAAC+AGG | 0.380383 | 7_4:+43120046 | Msa1155230:exon |
| AATGAGAAATTGTTGCCATC+TGG | 0.389074 | 7_4:-43120105 | None:intergenic |
| TTCTTTGGATATCTTGTCAA+TGG | 0.390936 | 7_4:+43120143 | Msa1155230:CDS |
| GTGCGTCTGCTAGTGTAAAT+AGG | 0.391821 | 7_4:-43121690 | None:intergenic |
| TCACCTAATTTCAGTGTTGT+TGG | 0.400864 | 7_4:+43121718 | Msa1155230:CDS |
| TCTGCAATACTCTTGGTAGT+TGG | 0.425608 | 7_4:+43121661 | Msa1155230:CDS |
| GTTGGTGTTGTTATGATAAC+CGG | 0.429713 | 7_4:+43121736 | Msa1155230:CDS |
| TTTCTTGTCTCAGCTATGGT+TGG | 0.441806 | 7_4:+43120747 | Msa1155230:intron |
| CATTAAGGTAAATCAGAAAC+AGG | 0.449175 | 7_4:-43120799 | None:intergenic |
| ATGAGAAATTGTTGCCATCT+GGG | 0.449700 | 7_4:-43120104 | None:intergenic |
| TTGCAGCATCCCTACGTGTA+TGG | 0.451909 | 7_4:+43122542 | Msa1155230:intron |
| TACTACTGTTGATGAAGAGT+TGG | 0.452829 | 7_4:+43123170 | Msa1155230:CDS |
| GGTTCTGCCAGTGATGATAA+TGG | 0.453653 | 7_4:+43121588 | Msa1155230:intron |
| TGAAAGGAGGCCCTTGGTCT+AGG | 0.454515 | 7_4:+43123227 | Msa1155230:CDS |
| GATTTAAACATAATCTGTGC+AGG | 0.457212 | 7_4:-43120932 | None:intergenic |
| GCAGATATATACTCATGTAT+TGG | 0.466873 | 7_4:-43121643 | None:intergenic |
| AAGGCTCTCTTAGGTATGGC+AGG | 0.469356 | 7_4:-43123114 | None:intergenic |
| TGTTATGATAACCGGTGCTT+TGG | 0.471959 | 7_4:+43121744 | Msa1155230:CDS |
| TGGTACTTCACATTTATTCA+AGG | 0.474364 | 7_4:+43120767 | Msa1155230:CDS |
| CTCTTCTGCTCTACAGTAGT+GGG | 0.478965 | 7_4:+43122363 | Msa1155230:CDS |
| TGGTTTCACAAGCAAGCAAA+TGG | 0.484985 | 7_4:+43120820 | Msa1155230:CDS |
| ACAGATAACAACAGCAAGAA+AGG | 0.486312 | 7_4:+43122975 | Msa1155230:intron |
| GTTGGTTTCAAATTGGTGAA+TGG | 0.498923 | 7_4:+43120017 | Msa1155230:five_prime_UTR |
| AGCATAGGTGGGATTAAGAA+AGG | 0.503212 | 7_4:-43122390 | None:intergenic |
| CAGGAGAATTATTCAAAGCA+TGG | 0.503301 | 7_4:+43122418 | Msa1155230:CDS |
| GAAGCTTTCTGCTGTACTCA+TGG | 0.507955 | 7_4:+43120865 | Msa1155230:CDS |
| ATTTAAGGCTCTCTTAGGTA+TGG | 0.516737 | 7_4:-43123118 | None:intergenic |
| TGGACTAATACTCATAGCTA+TGG | 0.524183 | 7_4:+43123059 | Msa1155230:CDS |
| ACTACTGTTGATGAAGAGTT+GGG | 0.528240 | 7_4:+43123171 | Msa1155230:CDS |
| TGATCACCTGTGTGGTATCA+GGG | 0.529466 | 7_4:-43121816 | None:intergenic |
| GTATATATCTGCAATACTCT+TGG | 0.531600 | 7_4:+43121654 | Msa1155230:CDS |
| TGTATTAGTATTTGAAGCAA+TGG | 0.532065 | 7_4:+43122565 | Msa1155230:CDS |
| GTTCTGCCAGTGATGATAAT+GGG | 0.533555 | 7_4:+43121589 | Msa1155230:CDS |
| TTAGGGAGAGGACTGAAACT+TGG | 0.534675 | 7_4:-43122601 | None:intergenic |
| TAAATTTACCATGGCTGTAG+TGG | 0.534678 | 7_4:-43122642 | None:intergenic |
| TGGTGCTGCCACTACAGCCA+TGG | 0.543212 | 7_4:+43122634 | Msa1155230:CDS |
| AAGCTTTCTGCTGTACTCAT+GGG | 0.546977 | 7_4:+43120866 | Msa1155230:CDS |
| GGATCACATGGCTTAACAAA+GGG | 0.550447 | 7_4:+43120887 | Msa1155230:CDS |
| AGCATGGACTTCATGTTCAC+AGG | 0.552121 | 7_4:+43122434 | Msa1155230:CDS |
| AAGGCACCCATTATCATCAC+TGG | 0.553179 | 7_4:-43121595 | None:intergenic |
| TAGGTGAAGAAGATGATGAA+AGG | 0.558799 | 7_4:+43123211 | Msa1155230:CDS |
| GAAGAGTTGGGAACACTCCA+TGG | 0.566100 | 7_4:+43123183 | Msa1155230:CDS |
| GAATTTGTGTGTACTTACAA+TGG | 0.568400 | 7_4:-43119787 | None:intergenic |
| AGATGATGAAAGGAGGCCCT+TGG | 0.573444 | 7_4:+43123221 | Msa1155230:CDS |
| GCAAGCAAATGGTGAACCCA+TGG | 0.573890 | 7_4:+43120831 | Msa1155230:CDS |
| GCTCTTCTGCTCTACAGTAG+TGG | 0.575505 | 7_4:+43122362 | Msa1155230:CDS |
| GCTGTACTCATGGGATCACA+TGG | 0.577442 | 7_4:+43120875 | Msa1155230:CDS |
| GGACTAATACTCATAGCTAT+GGG | 0.581423 | 7_4:+43123060 | Msa1155230:CDS |
| GGAACACTCCATGGTTCTGT+AGG | 0.587445 | 7_4:+43123192 | Msa1155230:CDS |
| AGAATCCATAACCAAAGCAC+CGG | 0.588172 | 7_4:-43121755 | None:intergenic |
| GGGATCACATGGCTTAACAA+AGG | 0.604916 | 7_4:+43120886 | Msa1155230:CDS |
| TATCATTCAACCTAGACCAA+GGG | 0.609666 | 7_4:-43123237 | None:intergenic |
| ACTAATACACCATACACGTA+GGG | 0.615564 | 7_4:-43122551 | None:intergenic |
| TTAACAGAACAACATGGGAG+TGG | 0.616464 | 7_4:+43123039 | Msa1155230:CDS |
| TTATCATTCAACCTAGACCA+AGG | 0.621202 | 7_4:-43123238 | None:intergenic |
| AACCATTAACAGAACAACAT+GGG | 0.639193 | 7_4:+43123034 | Msa1155230:CDS |
| ATTTAAACATAATCTGTGCA+GGG | 0.643855 | 7_4:-43120931 | None:intergenic |
| CACTCTCTGATAGACCCAGA+TGG | 0.644417 | 7_4:+43120090 | Msa1155230:CDS |
| CTTCTTCACCTACAGAACCA+TGG | 0.652962 | 7_4:-43123200 | None:intergenic |
| AAACCATTAACAGAACAACA+TGG | 0.655932 | 7_4:+43123033 | Msa1155230:CDS |
| GATTATGTTTAAATCCACAA+AGG | 0.671381 | 7_4:+43120940 | Msa1155230:CDS |
| GTGAAGAAGATGATGAAAGG+AGG | 0.673119 | 7_4:+43123214 | Msa1155230:CDS |
| TACTAATACACCATACACGT+AGG | 0.688815 | 7_4:-43122552 | None:intergenic |
| AAGATGAAGAAAGAAGAACA+GGG | 0.718452 | 7_4:+43120047 | Msa1155230:exon |
| TATGAACCCTGATACCACAC+AGG | 0.720480 | 7_4:+43121810 | Msa1155230:CDS |
| TCTTGTCAATGGTATCTGTG+AGG | 0.723438 | 7_4:+43120154 | Msa1155230:CDS |
| TAGAAAATTGATCACCTGTG+TGG | 0.789950 | 7_4:-43121824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGGATTTATTATAT+TGG | - | chr7_4:43121560-43121579 | None:intergenic | 10.0% |
| !! | AATTTAAAAAATCACAAATT+TGG | - | chr7_4:43121902-43121921 | None:intergenic | 10.0% |
| !! | TAAATGAATTTATATCTAAA+AGG | - | chr7_4:43123395-43123414 | None:intergenic | 10.0% |
| !!! | TTTTTACTGAATTGAATTTT+GGG | + | chr7_4:43119995-43120014 | Msa1155230:five_prime_UTR | 15.0% |
| !!! | AAAAATGAAATTTGTGATTT+TGG | + | chr7_4:43120720-43120739 | Msa1155230:intron | 15.0% |
| !!! | AAATCCAAATTTTATGTTAT+AGG | + | chr7_4:43121567-43121586 | Msa1155230:intron | 15.0% |
| !! | AAATTAATCATATACTTGTT+GGG | - | chr7_4:43121876-43121895 | None:intergenic | 15.0% |
| !! | TAAATTAATCATATACTTGT+TGG | - | chr7_4:43121877-43121896 | None:intergenic | 15.0% |
| !! | GCTCAAATAATTTAATAAAT+AGG | - | chr7_4:43121995-43122014 | None:intergenic | 15.0% |
| !!! | AAGTATAAGAATTTTTAATG+TGG | - | chr7_4:43122315-43122334 | None:intergenic | 15.0% |
| !!! | ATATATTAGTTTAGACAAAA+AGG | - | chr7_4:43122480-43122499 | None:intergenic | 15.0% |
| !! | TTAATACTAATATATGCAAA+AGG | - | chr7_4:43122800-43122819 | None:intergenic | 15.0% |
| !!! | TTTTCATATCATGTTATTAA+AGG | + | chr7_4:43123320-43123339 | Msa1155230:three_prime_UTR | 15.0% |
| !!! | CTTATAGTATTTTATATGCA+TGG | - | chr7_4:43119839-43119858 | None:intergenic | 20.0% |
| !!! | CTTTTTACTGAATTGAATTT+TGG | + | chr7_4:43119994-43120013 | Msa1155230:five_prime_UTR | 20.0% |
| !! | GAAGTTATAAATCTGATATT+TGG | + | chr7_4:43120569-43120588 | Msa1155230:intron | 20.0% |
| !! | TACAAAATATTGTGAAATAG+TGG | + | chr7_4:43121265-43121284 | Msa1155230:intron | 20.0% |
| !! | AGAACCTATAACATAAAATT+TGG | - | chr7_4:43121574-43121593 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGTTAACATAGA+TGG | + | chr7_4:43122335-43122354 | Msa1155230:intron | 20.0% |
| !! | AGTATTAAATACTTGATACT+TGG | + | chr7_4:43122812-43122831 | Msa1155230:intron | 20.0% |
| ! | TTAGCTTAAAATGCTTCTAA+TGG | + | chr7_4:43119940-43119959 | Msa1155230:five_prime_UTR | 25.0% |
| ! | AATTTATGGATTTAATCCTC+TGG | + | chr7_4:43120450-43120469 | Msa1155230:intron | 25.0% |
| ! | ATTAATCTGAGTTCAAATTC+TGG | - | chr7_4:43120547-43120566 | None:intergenic | 25.0% |
| !!! | TACTGATTTTTAGCTTTCAA+TGG | + | chr7_4:43120692-43120711 | Msa1155230:intron | 25.0% |
| ! | ATTTAAACATAATCTGTGCA+GGG | - | chr7_4:43120934-43120953 | None:intergenic | 25.0% |
| ! | GATTATGTTTAAATCCACAA+AGG | + | chr7_4:43120940-43120959 | Msa1155230:CDS | 25.0% |
| ! | TTCAAAAATGGGTAAAGTAA+AGG | - | chr7_4:43121007-43121026 | None:intergenic | 25.0% |
| !!! | TTTACTTTACCCATTTTTGA+AGG | + | chr7_4:43121006-43121025 | Msa1155230:intron | 25.0% |
| ! | AAACAGTATCCTTCAAAAAT+GGG | - | chr7_4:43121018-43121037 | None:intergenic | 25.0% |
| ! | AAAACAGTATCCTTCAAAAA+TGG | - | chr7_4:43121019-43121038 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGATACTGTTT+TGG | + | chr7_4:43121018-43121037 | Msa1155230:intron | 25.0% |
| !! | TTTGTGCTTACATCAATTTT+TGG | + | chr7_4:43121088-43121107 | Msa1155230:intron | 25.0% |
| !! | TGTGGATTACAAAAAAATAG+CGG | - | chr7_4:43121325-43121344 | None:intergenic | 25.0% |
| ! | TAATCATTGCTGCAAAATAA+TGG | - | chr7_4:43121413-43121432 | None:intergenic | 25.0% |
| ! | AAATCTGAATTACTGAAAGT+TGG | + | chr7_4:43121928-43121947 | Msa1155230:intron | 25.0% |
| ! | TAGCATATAAGAAAAACAGT+TGG | + | chr7_4:43122147-43122166 | Msa1155230:intron | 25.0% |
| ! | AGCATATAAGAAAAACAGTT+GGG | + | chr7_4:43122148-43122167 | Msa1155230:intron | 25.0% |
| !! | GAAAAACATGAAATCTGTTT+TGG | - | chr7_4:43122244-43122263 | None:intergenic | 25.0% |
| !! | AGATTTCATGTTTTTCTTCT+TGG | + | chr7_4:43122248-43122267 | Msa1155230:intron | 25.0% |
| !! | ATAAGAATTTTTAATGTGGC+AGG | - | chr7_4:43122311-43122330 | None:intergenic | 25.0% |
| !! | TGTATTAGTATTTGAAGCAA+TGG | + | chr7_4:43122565-43122584 | Msa1155230:CDS | 25.0% |
| ! | TTGTGATAGTAAATTTACCA+TGG | - | chr7_4:43122654-43122673 | None:intergenic | 25.0% |
| ! | GTATGTGACTTATTAATGTT+AGG | - | chr7_4:43122721-43122740 | None:intergenic | 25.0% |
| GAATTTGTGTGTACTTACAA+TGG | - | chr7_4:43119790-43119809 | None:intergenic | 30.0% | |
| GCTTGCTTAGACTAATAAAA+AGG | + | chr7_4:43119858-43119877 | Msa1155230:five_prime_UTR | 30.0% | |
| ! | AAGAAGAAGAATTGTTTTCG+TGG | - | chr7_4:43119896-43119915 | None:intergenic | 30.0% |
| !! | TACTGAATTGAATTTTGGGT+TGG | + | chr7_4:43119999-43120018 | Msa1155230:five_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTGGTTTCAAAT+TGG | + | chr7_4:43120010-43120029 | Msa1155230:five_prime_UTR | 30.0% |
| AAAGATGAAGAAAGAAGAAC+AGG | + | chr7_4:43120046-43120065 | Msa1155230:exon | 30.0% | |
| AAGATGAAGAAAGAAGAACA+GGG | + | chr7_4:43120047-43120066 | Msa1155230:exon | 30.0% | |
| TTCTTTGGATATCTTGTCAA+TGG | + | chr7_4:43120143-43120162 | Msa1155230:CDS | 30.0% | |
| ! | TATATGCTCTCTTCTCTTTT+TGG | + | chr7_4:43120181-43120200 | Msa1155230:intron | 30.0% |
| ! | TCTCATTTGTCTGATTTTTC+AGG | + | chr7_4:43120604-43120623 | Msa1155230:intron | 30.0% |
| TTCAGGAATATGTGTATAAC+AGG | + | chr7_4:43120621-43120640 | Msa1155230:intron | 30.0% | |
| ! | TGTATAACAGGCTTCATTTT+AGG | + | chr7_4:43120633-43120652 | Msa1155230:CDS | 30.0% |
| !!! | TTTTTTTCTTGTCTCAGCTA+TGG | + | chr7_4:43120743-43120762 | Msa1155230:intron | 30.0% |
| TGGTACTTCACATTTATTCA+AGG | + | chr7_4:43120767-43120786 | Msa1155230:CDS | 30.0% | |
| CATTAAGGTAAATCAGAAAC+AGG | - | chr7_4:43120802-43120821 | None:intergenic | 30.0% | |
| !! | CTGTTTCTGATTTACCTTAA+TGG | + | chr7_4:43120800-43120819 | Msa1155230:CDS | 30.0% |
| GATTTAAACATAATCTGTGC+AGG | - | chr7_4:43120935-43120954 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTCAGTTACCTTTG+TGG | - | chr7_4:43120957-43120976 | None:intergenic | 30.0% |
| AAAATGGGTAAAGTAAAGGT+AGG | - | chr7_4:43121003-43121022 | None:intergenic | 30.0% | |
| ATGATGTCAATCTCTAATCA+CGG | + | chr7_4:43121114-43121133 | Msa1155230:intron | 30.0% | |
| ATATTGTGAAATAGTGGCTA+TGG | + | chr7_4:43121271-43121290 | Msa1155230:intron | 30.0% | |
| TCTGATATAGTACAAAGTGT+TGG | - | chr7_4:43121352-43121371 | None:intergenic | 30.0% | |
| AACACTTTGTACTATATCAG+AGG | + | chr7_4:43121351-43121370 | Msa1155230:intron | 30.0% | |
| CTAAAACATGTCAGCTAATT+TGG | - | chr7_4:43121466-43121485 | None:intergenic | 30.0% | |
| !! | ATGTTTTAGACACTATGTCA+TGG | + | chr7_4:43121477-43121496 | Msa1155230:intron | 30.0% |
| GCAGATATATACTCATGTAT+TGG | - | chr7_4:43121646-43121665 | None:intergenic | 30.0% | |
| GTATATATCTGCAATACTCT+TGG | + | chr7_4:43121654-43121673 | Msa1155230:CDS | 30.0% | |
| ! | TTGGTTATGGATTCTTTTCT+TGG | + | chr7_4:43121763-43121782 | Msa1155230:CDS | 30.0% |
| ! | AATTCTCCTGTAAAAAGCAT+AGG | - | chr7_4:43122408-43122427 | None:intergenic | 30.0% |
| TTCATGTTCACAGGTAAATT+TGG | + | chr7_4:43122443-43122462 | Msa1155230:intron | 30.0% | |
| CAAACTGACATATTGAAATG+AGG | - | chr7_4:43122683-43122702 | None:intergenic | 30.0% | |
| CTCATTTCAATATGTCAGTT+TGG | + | chr7_4:43122681-43122700 | Msa1155230:intron | 30.0% | |
| TATGCAAAAGGTTAAGAGTT+TGG | - | chr7_4:43122788-43122807 | None:intergenic | 30.0% | |
| ! | GAATTGAAAGTTTTTCCCAA+TGG | + | chr7_4:43122838-43122857 | Msa1155230:intron | 30.0% |
| TTTCCCAATGGTAATTTAGT+TGG | + | chr7_4:43122850-43122869 | Msa1155230:intron | 30.0% | |
| TCACCAACTAAATTACCATT+GGG | - | chr7_4:43122856-43122875 | None:intergenic | 30.0% | |
| ATCACCAACTAAATTACCAT+TGG | - | chr7_4:43122857-43122876 | None:intergenic | 30.0% | |
| AAACCATTAACAGAACAACA+TGG | + | chr7_4:43123033-43123052 | Msa1155230:CDS | 30.0% | |
| AACCATTAACAGAACAACAT+GGG | + | chr7_4:43123034-43123053 | Msa1155230:CDS | 30.0% | |
| ! | GTTGGTTTCAAATTGGTGAA+TGG | + | chr7_4:43120017-43120036 | Msa1155230:five_prime_UTR | 35.0% |
| ATGAGAAATTGTTGCCATCT+GGG | - | chr7_4:43120107-43120126 | None:intergenic | 35.0% | |
| AATGAGAAATTGTTGCCATC+TGG | - | chr7_4:43120108-43120127 | None:intergenic | 35.0% | |
| CAATTTCTCATTTGTTCGTC+TGG | + | chr7_4:43120116-43120135 | Msa1155230:CDS | 35.0% | |
| !!! | GGATTTAATCCTCTGGTTTT+CGG | + | chr7_4:43120457-43120476 | Msa1155230:intron | 35.0% |
| !! | GAAAAATGGCTCTGATAATC+TGG | + | chr7_4:43120479-43120498 | Msa1155230:intron | 35.0% |
| TTCGGTTAGGAGATAAAAGT+CGG | + | chr7_4:43120504-43120523 | Msa1155230:intron | 35.0% | |
| ! | ATTCTGGCTAGAACAATCAT+TGG | - | chr7_4:43120531-43120550 | None:intergenic | 35.0% |
| ! | GCTTCACATAAGTTTTCCAT+GGG | - | chr7_4:43120850-43120869 | None:intergenic | 35.0% |
| ! | AGCTTCACATAAGTTTTCCA+TGG | - | chr7_4:43120851-43120870 | None:intergenic | 35.0% |
| !! | TGAAGGATACTGTTTTGGAT+CGG | + | chr7_4:43121023-43121042 | Msa1155230:intron | 35.0% |
| ! | TCGGTTATGTTTGAAACACA+TGG | + | chr7_4:43121042-43121061 | Msa1155230:intron | 35.0% |
| ! | ATGTTTGAAACACATGGAGA+TGG | + | chr7_4:43121048-43121067 | Msa1155230:intron | 35.0% |
| TCTCTAATCACGGAAAATAG+TGG | + | chr7_4:43121124-43121143 | Msa1155230:intron | 35.0% | |
| ! | GACACAGTGTTGTTAAATAG+CGG | + | chr7_4:43121190-43121209 | Msa1155230:intron | 35.0% |
| ACTATATCAGAGGACAATAG+TGG | + | chr7_4:43121361-43121380 | Msa1155230:intron | 35.0% | |
| GGTTGTAGCATAGCAAAATT+TGG | - | chr7_4:43121392-43121411 | None:intergenic | 35.0% | |
| TCACCTAATTTCAGTGTTGT+TGG | + | chr7_4:43121718-43121737 | Msa1155230:CDS | 35.0% | |
| ACACCAACAACACTGAAATT+AGG | - | chr7_4:43121724-43121743 | None:intergenic | 35.0% | |
| !! | GTTGGTGTTGTTATGATAAC+CGG | + | chr7_4:43121736-43121755 | Msa1155230:CDS | 35.0% |
| TAGAAAATTGATCACCTGTG+TGG | - | chr7_4:43121827-43121846 | None:intergenic | 35.0% | |
| !!! | AAGTTGGTCACTAGTTTTGA+CGG | + | chr7_4:43121944-43121963 | Msa1155230:intron | 35.0% |
| TTCGAGAGAGCTTATAGAAA+CGG | + | chr7_4:43122053-43122072 | Msa1155230:intron | 35.0% | |
| ! | GTTGCTAATTCAACCTTTTC+TGG | + | chr7_4:43122278-43122297 | Msa1155230:intron | 35.0% |
| CAGGAGAATTATTCAAAGCA+TGG | + | chr7_4:43122418-43122437 | Msa1155230:CDS | 35.0% | |
| ACTAATACACCATACACGTA+GGG | - | chr7_4:43122554-43122573 | None:intergenic | 35.0% | |
| TACTAATACACCATACACGT+AGG | - | chr7_4:43122555-43122574 | None:intergenic | 35.0% | |
| GAAGCAATGGCTACATTTAT+AGG | + | chr7_4:43122578-43122597 | Msa1155230:CDS | 35.0% | |
| TAAATTTACCATGGCTGTAG+TGG | - | chr7_4:43122645-43122664 | None:intergenic | 35.0% | |
| TAATGTTAGGTGCAGTACAA+TGG | - | chr7_4:43122708-43122727 | None:intergenic | 35.0% | |
| ACAGATAACAACAGCAAGAA+AGG | + | chr7_4:43122975-43122994 | Msa1155230:intron | 35.0% | |
| TGGACTAATACTCATAGCTA+TGG | + | chr7_4:43123059-43123078 | Msa1155230:CDS | 35.0% | |
| GGACTAATACTCATAGCTAT+GGG | + | chr7_4:43123060-43123079 | Msa1155230:CDS | 35.0% | |
| ! | ATTTAAGGCTCTCTTAGGTA+TGG | - | chr7_4:43123121-43123140 | None:intergenic | 35.0% |
| ! | GAAGTATTTAAGGCTCTCTT+AGG | - | chr7_4:43123126-43123145 | None:intergenic | 35.0% |
| !! | GTCTCTCTGAGAAGTATTTA+AGG | - | chr7_4:43123136-43123155 | None:intergenic | 35.0% |
| ! | TACTACTGTTGATGAAGAGT+TGG | + | chr7_4:43123170-43123189 | Msa1155230:CDS | 35.0% |
| ! | ACTACTGTTGATGAAGAGTT+GGG | + | chr7_4:43123171-43123190 | Msa1155230:CDS | 35.0% |
| TAGGTGAAGAAGATGATGAA+AGG | + | chr7_4:43123211-43123230 | Msa1155230:CDS | 35.0% | |
| TATCATTCAACCTAGACCAA+GGG | - | chr7_4:43123240-43123259 | None:intergenic | 35.0% | |
| TTATCATTCAACCTAGACCA+AGG | - | chr7_4:43123241-43123260 | None:intergenic | 35.0% | |
| TGTTCGTCTGGATTCTTCTT+TGG | + | chr7_4:43120128-43120147 | Msa1155230:CDS | 40.0% | |
| TCTTGTCAATGGTATCTGTG+AGG | + | chr7_4:43120154-43120173 | Msa1155230:CDS | 40.0% | |
| TTTGTGTCTCTGTGTGTAGA+AGG | + | chr7_4:43120316-43120335 | Msa1155230:intron | 40.0% | |
| TTGTGTCTCTGTGTGTAGAA+GGG | + | chr7_4:43120317-43120336 | Msa1155230:intron | 40.0% | |
| !!! | TCCTCTGGTTTTCGGAAAAA+TGG | + | chr7_4:43120465-43120484 | Msa1155230:intron | 40.0% |
| ! | TGATAATCTGGAGTTCGGTT+AGG | + | chr7_4:43120491-43120510 | Msa1155230:intron | 40.0% |
| TCGGTTAGGAGATAAAAGTC+GGG | + | chr7_4:43120505-43120524 | Msa1155230:intron | 40.0% | |
| TTTCTTGTCTCAGCTATGGT+TGG | + | chr7_4:43120747-43120766 | Msa1155230:intron | 40.0% | |
| GCTTGCTTGTGAAACCATTA+AGG | - | chr7_4:43120817-43120836 | None:intergenic | 40.0% | |
| TGGTTTCACAAGCAAGCAAA+TGG | + | chr7_4:43120820-43120839 | Msa1155230:CDS | 40.0% | |
| AAGCTTTCTGCTGTACTCAT+GGG | + | chr7_4:43120866-43120885 | Msa1155230:CDS | 40.0% | |
| GGATCACATGGCTTAACAAA+GGG | + | chr7_4:43120887-43120906 | Msa1155230:CDS | 40.0% | |
| TGGCTTAACAAAGGGTTCTT+TGG | + | chr7_4:43120895-43120914 | Msa1155230:CDS | 40.0% | |
| !! | GTACAAAGTGTTGGCAATTG+TGG | - | chr7_4:43121343-43121362 | None:intergenic | 40.0% |
| GTTCTGCCAGTGATGATAAT+GGG | + | chr7_4:43121589-43121608 | Msa1155230:CDS | 40.0% | |
| !! | ATAATGGGTGCCTTTATTCC+TGG | + | chr7_4:43121604-43121623 | Msa1155230:CDS | 40.0% |
| TCTTCTCAGACCAGGAATAA+AGG | - | chr7_4:43121617-43121636 | None:intergenic | 40.0% | |
| ! | GGATATTTTCTTCTCAGACC+AGG | - | chr7_4:43121625-43121644 | None:intergenic | 40.0% |
| ! | TCTGCAATACTCTTGGTAGT+TGG | + | chr7_4:43121661-43121680 | Msa1155230:CDS | 40.0% |
| TGTTATGATAACCGGTGCTT+TGG | + | chr7_4:43121744-43121763 | Msa1155230:CDS | 40.0% | |
| AGAATCCATAACCAAAGCAC+CGG | - | chr7_4:43121758-43121777 | None:intergenic | 40.0% | |
| AGCATAGGTGGGATTAAGAA+AGG | - | chr7_4:43122393-43122412 | None:intergenic | 40.0% | |
| !! | ATCCCACCTATGCTTTTTAC+AGG | + | chr7_4:43122399-43122418 | Msa1155230:CDS | 40.0% |
| ! | CTCCTGTAAAAAGCATAGGT+GGG | - | chr7_4:43122404-43122423 | None:intergenic | 40.0% |
| ! | TCTCCTGTAAAAAGCATAGG+TGG | - | chr7_4:43122405-43122424 | None:intergenic | 40.0% |
| AGCACCAAAAAGGGCAATTA+GGG | - | chr7_4:43122621-43122640 | None:intergenic | 40.0% | |
| CTCCCATGTTGTTCTGTTAA+TGG | - | chr7_4:43123039-43123058 | None:intergenic | 40.0% | |
| TTAACAGAACAACATGGGAG+TGG | + | chr7_4:43123039-43123058 | Msa1155230:CDS | 40.0% | |
| GTGAAGAAGATGATGAAAGG+AGG | + | chr7_4:43123214-43123233 | Msa1155230:CDS | 40.0% | |
| !! | GAACAGGGTCGTAGTTTGTT+TGG | + | chr7_4:43120062-43120081 | Msa1155230:CDS | 45.0% |
| TGTGTCTCTGTGTGTAGAAG+GGG | + | chr7_4:43120318-43120337 | Msa1155230:intron | 45.0% | |
| !!! | GCCATTTTTCCGAAAACCAG+AGG | - | chr7_4:43120469-43120488 | None:intergenic | 45.0% |
| ! | GGCTCTGATAATCTGGAGTT+CGG | + | chr7_4:43120486-43120505 | Msa1155230:intron | 45.0% |
| GAAGCTTTCTGCTGTACTCA+TGG | + | chr7_4:43120865-43120884 | Msa1155230:CDS | 45.0% | |
| GGGATCACATGGCTTAACAA+AGG | + | chr7_4:43120886-43120905 | Msa1155230:CDS | 45.0% | |
| CTCTTCAAACTGCGTCATTC+AGG | + | chr7_4:43121506-43121525 | Msa1155230:intron | 45.0% | |
| GGTTCTGCCAGTGATGATAA+TGG | + | chr7_4:43121588-43121607 | Msa1155230:intron | 45.0% | |
| ! | AAGGCACCCATTATCATCAC+TGG | - | chr7_4:43121598-43121617 | None:intergenic | 45.0% |
| GTGCGTCTGCTAGTGTAAAT+AGG | - | chr7_4:43121693-43121712 | None:intergenic | 45.0% | |
| GATAACCGGTGCTTTGGTTA+TGG | + | chr7_4:43121750-43121769 | Msa1155230:CDS | 45.0% | |
| TATGAACCCTGATACCACAC+AGG | + | chr7_4:43121810-43121829 | Msa1155230:CDS | 45.0% | |
| TGATCACCTGTGTGGTATCA+GGG | - | chr7_4:43121819-43121838 | None:intergenic | 45.0% | |
| TTGATCACCTGTGTGGTATC+AGG | - | chr7_4:43121820-43121839 | None:intergenic | 45.0% | |
| ! | GGGAAAGCACGAAGATGATT+AGG | - | chr7_4:43121856-43121875 | None:intergenic | 45.0% |
| GGCAGGTATACTACCAGAAA+AGG | - | chr7_4:43122294-43122313 | None:intergenic | 45.0% | |
| CTCTTCTGCTCTACAGTAGT+GGG | + | chr7_4:43122363-43122382 | Msa1155230:CDS | 45.0% | |
| AGCATGGACTTCATGTTCAC+AGG | + | chr7_4:43122434-43122453 | Msa1155230:CDS | 45.0% | |
| TTAGGGAGAGGACTGAAACT+TGG | - | chr7_4:43122604-43122623 | None:intergenic | 45.0% | |
| CAAAAAGGGCAATTAGGGAG+AGG | - | chr7_4:43122616-43122635 | None:intergenic | 45.0% | |
| ! | CTCTCCCTAATTGCCCTTTT+TGG | + | chr7_4:43122614-43122633 | Msa1155230:CDS | 45.0% |
| CAGCACCAAAAAGGGCAATT+AGG | - | chr7_4:43122622-43122641 | None:intergenic | 45.0% | |
| TGTAGTGGCAGCACCAAAAA+GGG | - | chr7_4:43122630-43122649 | None:intergenic | 45.0% | |
| !! | GGTATGGCAGGTTTGTTTTC+AGG | - | chr7_4:43123105-43123124 | None:intergenic | 45.0% |
| CTTCTTCACCTACAGAACCA+TGG | - | chr7_4:43123203-43123222 | None:intergenic | 45.0% | |
| !!! | TATATGAAATTTTTAATTTA+TGG | + | chr7_4:43120436-43120455 | Msa1155230:intron | 5.0% |
| CACTCTCTGATAGACCCAGA+TGG | + | chr7_4:43120090-43120109 | Msa1155230:CDS | 50.0% | |
| GCAAGCAAATGGTGAACCCA+TGG | + | chr7_4:43120831-43120850 | Msa1155230:CDS | 50.0% | |
| GCTGTACTCATGGGATCACA+TGG | + | chr7_4:43120875-43120894 | Msa1155230:CDS | 50.0% | |
| GCAGCTAATGCGTTGTAGTG+CGG | - | chr7_4:43121165-43121184 | None:intergenic | 50.0% | |
| GCTATGGCACTGTTGCATAG+CGG | + | chr7_4:43121287-43121306 | Msa1155230:intron | 50.0% | |
| GCTCTTCTGCTCTACAGTAG+TGG | + | chr7_4:43122362-43122381 | Msa1155230:CDS | 50.0% | |
| ATACACGTAGGGATGCTGCA+AGG | - | chr7_4:43122543-43122562 | None:intergenic | 50.0% | |
| TTGCAGCATCCCTACGTGTA+TGG | + | chr7_4:43122542-43122561 | Msa1155230:intron | 50.0% | |
| CTGTAGTGGCAGCACCAAAA+AGG | - | chr7_4:43122631-43122650 | None:intergenic | 50.0% | |
| AAGGCTCTCTTAGGTATGGC+AGG | - | chr7_4:43123117-43123136 | None:intergenic | 50.0% | |
| GAAGAGTTGGGAACACTCCA+TGG | + | chr7_4:43123183-43123202 | Msa1155230:CDS | 50.0% | |
| ! | GGAACACTCCATGGTTCTGT+AGG | + | chr7_4:43123192-43123211 | Msa1155230:CDS | 50.0% |
| AGATGATGAAAGGAGGCCCT+TGG | + | chr7_4:43123221-43123240 | Msa1155230:CDS | 50.0% | |
| GCTAATGCGTTGTAGTGCGG+TGG | - | chr7_4:43121162-43121181 | None:intergenic | 55.0% | |
| TGAAAGGAGGCCCTTGGTCT+AGG | + | chr7_4:43123227-43123246 | Msa1155230:CDS | 55.0% | |
| !! | TGGTGCTGCCACTACAGCCA+TGG | + | chr7_4:43122634-43122653 | Msa1155230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43119774 | 43123459 | 43119774 | ID=Msa1155230;Name=Msa1155230 |
| chr7_4 | mRNA | 43119774 | 43123459 | 43119774 | ID=Msa1155230-mRNA-1;Parent=Msa1155230;Name=Msa1155230-mRNA-1;_AED=0.06;_eAED=0.06;_QI=276|1|1|1|1|1|7|211|359 |
| chr7_4 | exon | 43119774 | 43120175 | 43119774 | ID=Msa1155230-mRNA-1:exon:10763;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43120626 | 43120654 | 43120626 | ID=Msa1155230-mRNA-1:exon:10764;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43120760 | 43120961 | 43120760 | ID=Msa1155230-mRNA-1:exon:10765;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43121589 | 43121831 | 43121589 | ID=Msa1155230-mRNA-1:exon:10766;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43122354 | 43122455 | 43122354 | ID=Msa1155230-mRNA-1:exon:10767;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43122548 | 43122655 | 43122548 | ID=Msa1155230-mRNA-1:exon:10768;Parent=Msa1155230-mRNA-1 |
| chr7_4 | exon | 43122979 | 43123459 | 43122979 | ID=Msa1155230-mRNA-1:exon:10769;Parent=Msa1155230-mRNA-1 |
| chr7_4 | five_prime_UTR | 43119774 | 43120049 | 43119774 | ID=Msa1155230-mRNA-1:five_prime_utr;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43120050 | 43120175 | 43120050 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43120626 | 43120654 | 43120626 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43120760 | 43120961 | 43120760 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43121589 | 43121831 | 43121589 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43122354 | 43122455 | 43122354 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43122548 | 43122655 | 43122548 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | CDS | 43122979 | 43123248 | 43122979 | ID=Msa1155230-mRNA-1:cds;Parent=Msa1155230-mRNA-1 |
| chr7_4 | three_prime_UTR | 43123249 | 43123459 | 43123249 | ID=Msa1155230-mRNA-1:three_prime_utr;Parent=Msa1155230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
