Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308060 | XP_003595434.1 | 93.688 | 507 | 32 | 0 | 21 | 527 | 1 | 507 | 0.0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308060 | sp|P42211|ASPRX_ORYSJ | 50.598 | 502 | 236 | 4 | 26 | 527 | 7 | 496 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0308060 | 0.808663 | 2.773227e-50 | -8.615850e-47 |
| Msa0225370 | Msa0308060 | 0.802324 | 5.922855e-49 | -8.615850e-47 |
| Msa0265620 | Msa0308060 | 0.806656 | 7.398878e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308060 | MtrunA17_Chr2g0302421 | 93.825 | 502 | 31 | 0 | 26 | 527 | 1 | 502 | 0.0 | 979 |
| Msa0308060 | MtrunA17_Chr4g0069631 | 67.061 | 507 | 157 | 2 | 21 | 527 | 1 | 497 | 0.0 | 736 |
| Msa0308060 | MtrunA17_Chr7g0271351 | 53.635 | 509 | 229 | 4 | 21 | 527 | 1 | 504 | 0.0 | 569 |
| Msa0308060 | MtrunA17_Chr1g0193211 | 51.838 | 517 | 230 | 5 | 21 | 527 | 1 | 508 | 0.0 | 564 |
| Msa0308060 | MtrunA17_Chr4g0075181 | 47.909 | 526 | 248 | 4 | 21 | 527 | 1 | 519 | 0.0 | 521 |
| Msa0308060 | MtrunA17_Chr2g0288851 | 50.097 | 513 | 247 | 3 | 21 | 527 | 1 | 510 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308060 | AT1G11910.1 | 50.992 | 504 | 235 | 5 | 27 | 527 | 12 | 506 | 0.0 | 533 |
| Msa0308060 | AT1G11910.2 | 51.731 | 491 | 228 | 4 | 40 | 527 | 33 | 517 | 0.0 | 533 |
| Msa0308060 | AT1G62290.1 | 49.222 | 514 | 242 | 5 | 23 | 526 | 8 | 512 | 0.0 | 530 |
| Msa0308060 | AT1G62290.2 | 49.222 | 514 | 242 | 5 | 23 | 526 | 8 | 512 | 0.0 | 530 |
| Msa0308060 | AT1G62290.5 | 48.975 | 488 | 230 | 5 | 23 | 500 | 8 | 486 | 8.35e-172 | 494 |
| Msa0308060 | AT4G04460.1 | 46.245 | 506 | 260 | 5 | 26 | 527 | 11 | 508 | 4.62e-170 | 491 |
| Msa0308060 | AT4G04460.2 | 46.047 | 506 | 257 | 6 | 26 | 527 | 11 | 504 | 2.00e-167 | 484 |
| Msa0308060 | AT1G62290.6 | 48.565 | 453 | 221 | 3 | 23 | 467 | 8 | 456 | 2.58e-159 | 461 |
| Msa0308060 | AT1G62290.4 | 48.565 | 453 | 221 | 3 | 23 | 467 | 8 | 456 | 2.58e-159 | 461 |
| Msa0308060 | AT1G62290.3 | 48.309 | 414 | 202 | 3 | 23 | 428 | 8 | 417 | 6.65e-140 | 410 |
| Msa0308060 | AT4G22050.1 | 42.041 | 245 | 134 | 7 | 88 | 328 | 34 | 274 | 8.71e-48 | 169 |
| Msa0308060 | AT1G69100.2 | 37.500 | 256 | 144 | 8 | 83 | 327 | 38 | 288 | 3.80e-41 | 152 |
| Msa0308060 | AT1G69100.1 | 37.500 | 256 | 144 | 8 | 83 | 327 | 30 | 280 | 4.61e-41 | 152 |
Find 124 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTACCAATTTCGTTAT+AGG | 0.173032 | 2_4:-2004195 | None:intergenic |
| TACTTCGATGTACAATATTA+TGG | 0.181183 | 2_4:+2003910 | Msa0308060:CDS |
| TTAATTCTTCAAGAATTAAA+AGG | 0.191834 | 2_4:+2003815 | Msa0308060:CDS |
| TATGACGAAGGATACATTTA+TGG | 0.197072 | 2_4:+2004309 | Msa0308060:CDS |
| GATAGAACAAGGGCATATTT+TGG | 0.210982 | 2_4:+2004986 | Msa0308060:CDS |
| AACGATTGTCCAACTGGATT+TGG | 0.220699 | 2_4:-2007200 | None:intergenic |
| TATACTTGGACTTGGATTTC+AGG | 0.221417 | 2_4:+2004544 | Msa0308060:CDS |
| CAATAACCCTCTTGAGAAAT+TGG | 0.237329 | 2_4:-2005119 | None:intergenic |
| ATGTCAGCACATAAGATTTC+AGG | 0.241847 | 2_4:-2006460 | None:intergenic |
| TTGGATTTGGACTCTATCTT+TGG | 0.242436 | 2_4:+2003723 | Msa0308060:CDS |
| GAGAGTGTTGATACAAATTA+TGG | 0.243779 | 2_4:+2003859 | Msa0308060:CDS |
| CAATTTCTCAAGAGGGTTAT+TGG | 0.244036 | 2_4:+2005120 | Msa0308060:CDS |
| ACACTGGTAGCTCTAATCTT+TGG | 0.244114 | 2_4:+2003980 | Msa0308060:CDS |
| TTTCTCCCTATGGTTAAATA+AGG | 0.246886 | 2_4:+2005016 | Msa0308060:CDS |
| CAAAAGAGACTCTCTCTTAA+TGG | 0.252205 | 2_4:-2006654 | None:intergenic |
| ATATGGGAATCATTGATTTC+AGG | 0.264136 | 2_4:+2006189 | Msa0308060:CDS |
| CACTGGTAGCTCTAATCTTT+GGG | 0.265139 | 2_4:+2003981 | Msa0308060:CDS |
| GTACAATATTATGGGGAAAT+TGG | 0.281616 | 2_4:+2003919 | Msa0308060:CDS |
| TGCTGGTTGTTACATGTCTT+TGG | 0.282305 | 2_4:+2003704 | Msa0308060:CDS |
| ATTAGACTTTGTTCAGATAA+TGG | 0.288447 | 2_4:+2006481 | Msa0308060:CDS |
| TAGATAATGTCTACTGGTTT+AGG | 0.297014 | 2_4:+2007924 | Msa0308060:three_prime_UTR |
| TTGTTACATGTCTTTGGATT+TGG | 0.297367 | 2_4:+2003710 | Msa0308060:CDS |
| AGATTATAAATTCAACTTCT+TGG | 0.298491 | 2_4:+2008008 | Msa0308060:three_prime_UTR |
| AATACTCACACTCACTATTA+TGG | 0.305864 | 2_4:-2007971 | None:intergenic |
| TCTAGCACCTATAACGAAAT+TGG | 0.307202 | 2_4:+2004188 | Msa0308060:CDS |
| CTTCCATTTGATGGTATACT+TGG | 0.310582 | 2_4:+2004530 | Msa0308060:CDS |
| CCAAACATTACATTCACATT+TGG | 0.310989 | 2_4:+2007251 | Msa0308060:CDS |
| GTTGAAATACAAACCTGTTC+TGG | 0.348610 | 2_4:-2007296 | None:intergenic |
| TTTATAAACGATTGTCCAAC+TGG | 0.360656 | 2_4:-2007206 | None:intergenic |
| ATAACTACGGAAATTCGATA+TGG | 0.362943 | 2_4:+2006172 | Msa0308060:CDS |
| ACTTCGATGTACAATATTAT+GGG | 0.364929 | 2_4:+2003911 | Msa0308060:CDS |
| ACGATTGTCCAACTGGATTT+GGG | 0.369274 | 2_4:-2007199 | None:intergenic |
| ATATCGAATTTCCGTAGTTA+TGG | 0.381442 | 2_4:-2006170 | None:intergenic |
| TCTTGATGTGCCTTCCCCAC+AGG | 0.383933 | 2_4:+2007607 | Msa0308060:CDS |
| TATTATGGGGAAATTGGTAT+TGG | 0.391129 | 2_4:+2003925 | Msa0308060:CDS |
| GTTTCCTCTCTCTCCAGAAC+AGG | 0.392495 | 2_4:+2007283 | Msa0308060:CDS |
| GCCAAGACAATGTAAAAGTT+GGG | 0.392884 | 2_4:+2004340 | Msa0308060:CDS |
| CAGATTCTGCAAATCCTATA+CGG | 0.404994 | 2_4:-2007822 | None:intergenic |
| CTGTGCTGCAATAGTGGACT+CGG | 0.415057 | 2_4:+2005972 | Msa0308060:CDS |
| GGAAATAAATCAATTGAGTT+GGG | 0.415891 | 2_4:+2008046 | Msa0308060:three_prime_UTR |
| TATGGGAATCATTGATTTCA+GGG | 0.417684 | 2_4:+2006190 | Msa0308060:CDS |
| CCAAATGTGAATGTAATGTT+TGG | 0.425255 | 2_4:-2007251 | None:intergenic |
| TTTGCAATATGGTTGTCCTT+TGG | 0.425536 | 2_4:+2006682 | Msa0308060:CDS |
| TGGAAATAAATCAATTGAGT+TGG | 0.426822 | 2_4:+2008045 | Msa0308060:three_prime_UTR |
| TCGGGGACTACTTTAATTGC+CGG | 0.429816 | 2_4:+2005991 | Msa0308060:CDS |
| TGCAAATCCTATACGGAGAT+TGG | 0.430860 | 2_4:-2007815 | None:intergenic |
| TTGGATCCTTATTTAACCAT+AGG | 0.445146 | 2_4:-2005022 | None:intergenic |
| GTAGGTGGTGAGATTGTCTT+TGG | 0.445186 | 2_4:+2005053 | Msa0308060:CDS |
| CTTGATGTGCCTTCCCCACA+GGG | 0.450970 | 2_4:+2007608 | Msa0308060:CDS |
| TTTGATGGTATACTTGGACT+TGG | 0.456207 | 2_4:+2004536 | Msa0308060:CDS |
| AGCCAAGACAATGTAAAAGT+TGG | 0.457098 | 2_4:+2004339 | Msa0308060:CDS |
| TTTCATTCGAAGTATAGGTC+CGG | 0.458334 | 2_4:+2004161 | Msa0308060:CDS |
| CTTCCCCACAGGGTCCCCTC+TGG | 0.461021 | 2_4:+2007618 | Msa0308060:CDS |
| CTACTTGCAAATAATACAAC+AGG | 0.464850 | 2_4:+2005245 | Msa0308060:CDS |
| CAGTGGTGCATAATGAAAGT+TGG | 0.466959 | 2_4:+2006622 | Msa0308060:CDS |
| ATATGTACATGCAGGGTTGT+TGG | 0.467846 | 2_4:+2007751 | Msa0308060:intron |
| GGGTGGCTGTGCTGCAATAG+TGG | 0.468506 | 2_4:+2005966 | Msa0308060:CDS |
| GGATTTCAGGATGTTTCAGT+TGG | 0.471759 | 2_4:+2004557 | Msa0308060:CDS |
| AGTCCAAGTATACCATCAAA+TGG | 0.476577 | 2_4:-2004533 | None:intergenic |
| GGTTTAGGTAAGAGTATGTA+AGG | 0.482112 | 2_4:+2007939 | Msa0308060:three_prime_UTR |
| TTCTCAAGAGGGTTATTGGC+AGG | 0.482133 | 2_4:+2005124 | Msa0308060:CDS |
| TGGATCCTTATTTAACCATA+GGG | 0.490719 | 2_4:-2005021 | None:intergenic |
| TAAATGTATCCTTCGTCATA+CGG | 0.490882 | 2_4:-2004306 | None:intergenic |
| TAATTCTTCAAGAATTAAAA+GGG | 0.495898 | 2_4:+2003816 | Msa0308060:CDS |
| CAGAGGGGACCCTGTGGGGA+AGG | 0.496212 | 2_4:-2007617 | None:intergenic |
| TCACCACCTACTTCTGCCAT+TGG | 0.500814 | 2_4:-2005041 | None:intergenic |
| TATTTATATTATATTATGAA+AGG | 0.502323 | 2_4:+2003388 | None:intergenic |
| AACCATGCCATTGGAACAGA+AGG | 0.503270 | 2_4:+2006117 | Msa0308060:CDS |
| GAGAAGATGCATCTTGAAGA+TGG | 0.504280 | 2_4:-2004006 | None:intergenic |
| GATTTCAGGATGTTTCAGTT+GGG | 0.511773 | 2_4:+2004558 | Msa0308060:CDS |
| AGTGGTGCATAATGAAAGTT+GGG | 0.513363 | 2_4:+2006623 | Msa0308060:CDS |
| TAACTACGGAAATTCGATAT+GGG | 0.515650 | 2_4:+2006173 | Msa0308060:CDS |
| TTCATTCGAAGTATAGGTCC+GGG | 0.518192 | 2_4:+2004162 | Msa0308060:CDS |
| ACTCAAATTAACCATGCCAT+TGG | 0.518999 | 2_4:+2006108 | Msa0308060:CDS |
| GTTATAGGTGCTAGATATCC+CGG | 0.521288 | 2_4:-2004180 | None:intergenic |
| AAATGTATCCTTCGTCATAC+GGG | 0.521845 | 2_4:-2004305 | None:intergenic |
| AACAAATCCTTCTGTTCCAA+TGG | 0.528562 | 2_4:-2006124 | None:intergenic |
| GGTGGTGAGATTGTCTTTGG+TGG | 0.532460 | 2_4:+2005056 | Msa0308060:CDS |
| ATCCTTCTGTTCCAATGGCA+TGG | 0.535909 | 2_4:-2006119 | None:intergenic |
| GATTAAGCAAAGCAATGTAA+AGG | 0.536096 | 2_4:+2006716 | Msa0308060:CDS |
| TACTTTCCAATTTCTCAAGA+GGG | 0.541272 | 2_4:+2005113 | Msa0308060:CDS |
| TGTTCTCCTGTGTGCTATAG+CGG | 0.548629 | 2_4:+2007575 | Msa0308060:CDS |
| TTACTTTCCAATTTCTCAAG+AGG | 0.549803 | 2_4:+2005112 | Msa0308060:CDS |
| GACTACGCCAATCTCCGTAT+AGG | 0.550968 | 2_4:+2007808 | Msa0308060:CDS |
| TGAGATTGTCTTTGGTGGTG+TGG | 0.551573 | 2_4:+2005061 | Msa0308060:CDS |
| TCAATTGAGTTGGGAATCTG+TGG | 0.552340 | 2_4:+2008055 | Msa0308060:three_prime_UTR |
| AGTATGTAGATAATGTCTAC+TGG | 0.555773 | 2_4:+2007918 | Msa0308060:three_prime_UTR |
| TGTGCTGCAATAGTGGACTC+GGG | 0.559334 | 2_4:+2005973 | Msa0308060:CDS |
| GAGATGATATACAGTTGGAC+CGG | 0.561077 | 2_4:-2006010 | None:intergenic |
| AAGGATCCAATGGCAGAAGT+AGG | 0.566235 | 2_4:+2005035 | Msa0308060:CDS |
| ATGGTTAAATAAGGATCCAA+TGG | 0.567385 | 2_4:+2005025 | Msa0308060:CDS |
| TCGTCATACGGGATTTCGCA+TGG | 0.575056 | 2_4:-2004294 | None:intergenic |
| CAAACCTGTTCTGGAGAGAG+AGG | 0.576097 | 2_4:-2007287 | None:intergenic |
| TTGTATCTGCAGATTGAAGT+GGG | 0.578198 | 2_4:+2005215 | Msa0308060:intron |
| GATGAATTTGAAGTATATGC+TGG | 0.581629 | 2_4:+2003687 | Msa0308060:CDS |
| AAGGTATATTACTCTATGAA+AGG | 0.582052 | 2_4:+2003407 | Msa0308060:exon |
| TTCAATGTTGTGTTTGACAC+TGG | 0.588083 | 2_4:+2003964 | Msa0308060:CDS |
| GAGAAATTGGAAAGTAAGTG+TGG | 0.591719 | 2_4:-2005106 | None:intergenic |
| CCAAGACAATGTAAAAGTTG+GGG | 0.597378 | 2_4:+2004341 | Msa0308060:CDS |
| GTATCTGCAGATTGAAGTGG+GGG | 0.601539 | 2_4:+2005217 | Msa0308060:intron |
| CTTCGATGTACAATATTATG+GGG | 0.602132 | 2_4:+2003912 | Msa0308060:CDS |
| AGGTATAATATGATAGAACA+AGG | 0.609572 | 2_4:+2004975 | Msa0308060:intron |
| TGCGAAATCCCGTATGACGA+AGG | 0.612662 | 2_4:+2004297 | Msa0308060:CDS |
| GTGCATAATGAAAGTTGGGA+TGG | 0.614926 | 2_4:+2006627 | Msa0308060:CDS |
| ATGGGAATCATTGATTTCAG+GGG | 0.615119 | 2_4:+2006191 | Msa0308060:CDS |
| ATCTGCAAATATTACCACAC+TGG | 0.620524 | 2_4:-2004590 | None:intergenic |
| TTTGTATCTGCAGATTGAAG+TGG | 0.623910 | 2_4:+2005214 | Msa0308060:intron |
| AGTATTAAAATATGTCGATG+AGG | 0.637042 | 2_4:+2006743 | Msa0308060:CDS |
| ATTACCAGAGGGGACCCTGT+GGG | 0.641259 | 2_4:-2007622 | None:intergenic |
| CTTAAAGTTGAATCAGACGA+TGG | 0.642080 | 2_4:+2007548 | Msa0308060:CDS |
| GTGCTGCAATAGTGGACTCG+GGG | 0.644938 | 2_4:+2005974 | Msa0308060:CDS |
| GATCCAATGGCAGAAGTAGG+TGG | 0.646273 | 2_4:+2005038 | Msa0308060:CDS |
| TTTACAGGTTTATGTCAGGG+TGG | 0.650609 | 2_4:+2005949 | Msa0308060:intron |
| TTACCAGAGGGGACCCTGTG+GGG | 0.651193 | 2_4:-2007621 | None:intergenic |
| GAGAGGCTCCCAAATCCAGT+TGG | 0.660493 | 2_4:+2007191 | Msa0308060:CDS |
| AACACAACATTGAAGTACTG+TGG | 0.688328 | 2_4:-2003955 | None:intergenic |
| TGTATCTGCAGATTGAAGTG+GGG | 0.691045 | 2_4:+2005216 | Msa0308060:intron |
| CAGTGATGTTATTGAAACAG+TGG | 0.692257 | 2_4:+2006605 | Msa0308060:intron |
| GGTATAATATGATAGAACAA+GGG | 0.695867 | 2_4:+2004976 | Msa0308060:intron |
| TATTACCAGAGGGGACCCTG+TGG | 0.703309 | 2_4:-2007623 | None:intergenic |
| ACAAAACCGCTATAGCACAC+AGG | 0.715098 | 2_4:-2007581 | None:intergenic |
| TTGGGAAAGTCACACCAGTG+TGG | 0.728601 | 2_4:+2004576 | Msa0308060:CDS |
| ACAACATTGAAGTACTGTGG+TGG | 0.758447 | 2_4:-2003952 | None:intergenic |
| ATAAGTATGTATTACCAGAG+GGG | 0.771682 | 2_4:-2007632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCTTCAAGAATTAAA+AGG | + | chr2_4:2003815-2003834 | Msa0308060:CDS | 15.0% |
| !! | TAATTCTTCAAGAATTAAAA+GGG | + | chr2_4:2003816-2003835 | Msa0308060:CDS | 15.0% |
| !! | TAAAAAACATCAGAATATAT+CGG | - | chr2_4:2004918-2004937 | None:intergenic | 15.0% |
| !! | ATTTCTATATATTTCTTGAA+AGG | + | chr2_4:2005418-2005437 | Msa0308060:intron | 15.0% |
| !!! | CTGTTTTATTTAAATTACAA+AGG | + | chr2_4:2006802-2006821 | Msa0308060:intron | 15.0% |
| !! | ATTTAGAAACTATATATTCA+AGG | - | chr2_4:2006861-2006880 | None:intergenic | 15.0% |
| !! | GAAACTGAAAACTATAAATA+TGG | + | chr2_4:2003572-2003591 | Msa0308060:intron | 20.0% |
| !!! | TTTTTGTAAAATTGCATCTT+CGG | + | chr2_4:2004092-2004111 | Msa0308060:intron | 20.0% |
| !!! | TAACTTTTTGGATAATATTC+AGG | + | chr2_4:2004267-2004286 | Msa0308060:intron | 20.0% |
| !!! | CAATTCATGTGATTATATTT+TGG | + | chr2_4:2004863-2004882 | Msa0308060:intron | 20.0% |
| !!! | GATATATTCTGATGTTTTTT+AGG | + | chr2_4:2004917-2004936 | Msa0308060:intron | 20.0% |
| !! | AATAAAAGTAAAGAATGACA+TGG | - | chr2_4:2005193-2005212 | None:intergenic | 20.0% |
| !!! | TCTAAAATGACTTTATAAGT+GGG | + | chr2_4:2005788-2005807 | Msa0308060:intron | 20.0% |
| !! | CTAACTAAATTATACAAAAC+TGG | - | chr2_4:2005835-2005854 | None:intergenic | 20.0% |
| !!! | TTTCATCTAAAATTTGGATA+GGG | - | chr2_4:2005858-2005877 | None:intergenic | 20.0% |
| !!! | ATTTCATCTAAAATTTGGAT+AGG | - | chr2_4:2005859-2005878 | None:intergenic | 20.0% |
| !!! | AACTTGTGTAAATATTTTAC+AGG | + | chr2_4:2005934-2005953 | Msa0308060:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr2_4:2006308-2006327 | None:intergenic | 20.0% |
| !! | AAATTTGAATTAATGAAGCA+CGG | - | chr2_4:2006393-2006412 | None:intergenic | 20.0% |
| !!! | TTACAAAGGTTTGAATATTT+TGG | + | chr2_4:2006816-2006835 | Msa0308060:intron | 20.0% |
| !! | AACATAAAACACATAATTTG+AGG | - | chr2_4:2006969-2006988 | None:intergenic | 20.0% |
| !!! | TTTATAACTTTATTTTTCGG+AGG | + | chr2_4:2007119-2007138 | Msa0308060:intron | 20.0% |
| !! | AGATTATAAATTCAACTTCT+TGG | + | chr2_4:2008008-2008027 | Msa0308060:three_prime_UTR | 20.0% |
| !! | TCTTGGTTAAAAAACATATA+TGG | + | chr2_4:2008025-2008044 | Msa0308060:three_prime_UTR | 20.0% |
| ! | AAGGTATATTACTCTATGAA+AGG | + | chr2_4:2003407-2003426 | Msa0308060:exon | 25.0% |
| ! | ATCTGTTTCAAATTTCAACA+TGG | - | chr2_4:2003670-2003689 | None:intergenic | 25.0% |
| !! | GCTTTTACAATTTCTAATGA+TGG | + | chr2_4:2003745-2003764 | Msa0308060:CDS | 25.0% |
| ! | TACTTCGATGTACAATATTA+TGG | + | chr2_4:2003910-2003929 | Msa0308060:CDS | 25.0% |
| ! | ACTTCGATGTACAATATTAT+GGG | + | chr2_4:2003911-2003930 | Msa0308060:CDS | 25.0% |
| ! | CTTATATCGAATTGAATTCA+TGG | + | chr2_4:2004053-2004072 | Msa0308060:intron | 25.0% |
| ! | AAAGTTACCAATTTCGTTAT+AGG | - | chr2_4:2004198-2004217 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGTATGCTTCTT+TGG | + | chr2_4:2004428-2004447 | Msa0308060:intron | 25.0% |
| ! | GTACCAATACTTAAGATTAA+AGG | + | chr2_4:2004699-2004718 | Msa0308060:intron | 25.0% |
| ! | ATGCCTTTAATCTTAAGTAT+TGG | - | chr2_4:2004705-2004724 | None:intergenic | 25.0% |
| !!! | ATTATATTTTGGTTGCGATA+GGG | + | chr2_4:2004874-2004893 | Msa0308060:intron | 25.0% |
| !!! | TTAATCACTGCATGTTTTTT+AGG | - | chr2_4:2004943-2004962 | None:intergenic | 25.0% |
| ! | AGGTATAATATGATAGAACA+AGG | + | chr2_4:2004975-2004994 | Msa0308060:intron | 25.0% |
| ! | GGTATAATATGATAGAACAA+GGG | + | chr2_4:2004976-2004995 | Msa0308060:intron | 25.0% |
| ! | ATGCTAAATAGAAATGCATA+AGG | - | chr2_4:2005272-2005291 | None:intergenic | 25.0% |
| ! | TTGAAAATGAGTTCATAAGT+GGG | + | chr2_4:2005574-2005593 | Msa0308060:intron | 25.0% |
| ! | CTAAAACGAACTGAAAATTT+GGG | - | chr2_4:2005649-2005668 | None:intergenic | 25.0% |
| ! | ACTAAAACGAACTGAAAATT+TGG | - | chr2_4:2005650-2005669 | None:intergenic | 25.0% |
| ! | CTCATATATAAGATGAGATA+TGG | + | chr2_4:2005765-2005784 | Msa0308060:intron | 25.0% |
| !! | GTCTAAAATGACTTTATAAG+TGG | + | chr2_4:2005787-2005806 | Msa0308060:intron | 25.0% |
| !!! | TTATACAAAACTGGTTTGTA+AGG | - | chr2_4:2005826-2005845 | None:intergenic | 25.0% |
| !! | AGCGTATTTCATCTAAAATT+TGG | - | chr2_4:2005864-2005883 | None:intergenic | 25.0% |
| !! | AAATTTTAGATGAAATACGC+TGG | + | chr2_4:2005863-2005882 | Msa0308060:intron | 25.0% |
| ! | ATTTACACAAGTTTATGTTG+TGG | - | chr2_4:2005927-2005946 | None:intergenic | 25.0% |
| !! | ATATTTTACAGGTTTATGTC+AGG | + | chr2_4:2005945-2005964 | Msa0308060:intron | 25.0% |
| !! | TATTTTACAGGTTTATGTCA+GGG | + | chr2_4:2005946-2005965 | Msa0308060:intron | 25.0% |
| !!! | TTTTAGAGATGATATACAGT+TGG | - | chr2_4:2006018-2006037 | None:intergenic | 25.0% |
| ! | AAAAACATTGTCCATAACTA+CGG | + | chr2_4:2006159-2006178 | Msa0308060:CDS | 25.0% |
| ! | ATTAGACTTTGTTCAGATAA+TGG | + | chr2_4:2006481-2006500 | Msa0308060:CDS | 25.0% |
| !! | CTTTTGTAGTTTTTGCAATA+TGG | + | chr2_4:2006671-2006690 | Msa0308060:CDS | 25.0% |
| ! | AGTATTAAAATATGTCGATG+AGG | + | chr2_4:2006743-2006762 | Msa0308060:CDS | 25.0% |
| !! | TTTGGAGTAAACATAGTTAT+AGG | + | chr2_4:2006834-2006853 | Msa0308060:intron | 25.0% |
| ! | ATTCATGTTGATCTAACAAA+CGG | - | chr2_4:2007345-2007364 | None:intergenic | 25.0% |
| ! | TGCATGTACATATATCTATA+CGG | - | chr2_4:2007744-2007763 | None:intergenic | 25.0% |
| ! | TATAGATATATGTACATGCA+GGG | + | chr2_4:2007744-2007763 | Msa0308060:intron | 25.0% |
| ! | TGGAAATAAATCAATTGAGT+TGG | + | chr2_4:2008045-2008064 | Msa0308060:three_prime_UTR | 25.0% |
| ! | GGAAATAAATCAATTGAGTT+GGG | + | chr2_4:2008046-2008065 | Msa0308060:three_prime_UTR | 25.0% |
| TCAACATCATCATCATCATA+AGG | + | chr2_4:2003457-2003476 | Msa0308060:CDS | 30.0% | |
| GCAAGACATAAAGAAATTCA+AGG | - | chr2_4:2003494-2003513 | None:intergenic | 30.0% | |
| ATTTCTTTATGTCTTGCTTC+TGG | + | chr2_4:2003497-2003516 | Msa0308060:intron | 30.0% | |
| ! | GATGAATTTGAAGTATATGC+TGG | + | chr2_4:2003687-2003706 | Msa0308060:CDS | 30.0% |
| TTGTTACATGTCTTTGGATT+TGG | + | chr2_4:2003710-2003729 | Msa0308060:CDS | 30.0% | |
| !! | GAGAGTGTTGATACAAATTA+TGG | + | chr2_4:2003859-2003878 | Msa0308060:CDS | 30.0% |
| CTTCGATGTACAATATTATG+GGG | + | chr2_4:2003912-2003931 | Msa0308060:CDS | 30.0% | |
| GTACAATATTATGGGGAAAT+TGG | + | chr2_4:2003919-2003938 | Msa0308060:CDS | 30.0% | |
| TATTATGGGGAAATTGGTAT+TGG | + | chr2_4:2003925-2003944 | Msa0308060:CDS | 30.0% | |
| !! | GCTATTTTCATTCGAAGTAT+AGG | + | chr2_4:2004156-2004175 | Msa0308060:CDS | 30.0% |
| ! | GCATGCTTAAAGTAACTTTT+TGG | + | chr2_4:2004255-2004274 | Msa0308060:intron | 30.0% |
| TAAATGTATCCTTCGTCATA+CGG | - | chr2_4:2004309-2004328 | None:intergenic | 30.0% | |
| TATGACGAAGGATACATTTA+TGG | + | chr2_4:2004309-2004328 | Msa0308060:CDS | 30.0% | |
| !!! | TCTTTGGTTTTATTGATGTC+TGG | + | chr2_4:2004444-2004463 | Msa0308060:intron | 30.0% |
| !!! | GATTATATTTTGGTTGCGAT+AGG | + | chr2_4:2004873-2004892 | Msa0308060:intron | 30.0% |
| TTTCTCCCTATGGTTAAATA+AGG | + | chr2_4:2005016-2005035 | Msa0308060:CDS | 30.0% | |
| ! | TGGATCCTTATTTAACCATA+GGG | - | chr2_4:2005024-2005043 | None:intergenic | 30.0% |
| ! | TTGGATCCTTATTTAACCAT+AGG | - | chr2_4:2005025-2005044 | None:intergenic | 30.0% |
| ATGGTTAAATAAGGATCCAA+TGG | + | chr2_4:2005025-2005044 | Msa0308060:CDS | 30.0% | |
| TTACTTTCCAATTTCTCAAG+AGG | + | chr2_4:2005112-2005131 | Msa0308060:CDS | 30.0% | |
| TACTTTCCAATTTCTCAAGA+GGG | + | chr2_4:2005113-2005132 | Msa0308060:CDS | 30.0% | |
| CTACTTGCAAATAATACAAC+AGG | + | chr2_4:2005245-2005264 | Msa0308060:CDS | 30.0% | |
| GCTATTGTGTAGAACTAAAA+GGG | + | chr2_4:2005456-2005475 | Msa0308060:intron | 30.0% | |
| !! | AAATGTTAAGAGTATCGCAT+TGG | + | chr2_4:2005539-2005558 | Msa0308060:intron | 30.0% |
| CTTGAAAATGAGTTCATAAG+TGG | + | chr2_4:2005573-2005592 | Msa0308060:intron | 30.0% | |
| AAAATGACTTTATAAGTGGG+AGG | + | chr2_4:2005791-2005810 | Msa0308060:intron | 30.0% | |
| !!! | TCTTACTAGTTCTTGTTTTC+AGG | + | chr2_4:2006077-2006096 | Msa0308060:intron | 30.0% |
| !!! | CTTACTAGTTCTTGTTTTCA+GGG | + | chr2_4:2006078-2006097 | Msa0308060:intron | 30.0% |
| ATATCGAATTTCCGTAGTTA+TGG | - | chr2_4:2006173-2006192 | None:intergenic | 30.0% | |
| ATAACTACGGAAATTCGATA+TGG | + | chr2_4:2006172-2006191 | Msa0308060:CDS | 30.0% | |
| TAACTACGGAAATTCGATAT+GGG | + | chr2_4:2006173-2006192 | Msa0308060:CDS | 30.0% | |
| !! | ATATGGGAATCATTGATTTC+AGG | + | chr2_4:2006189-2006208 | Msa0308060:CDS | 30.0% |
| !! | TATGGGAATCATTGATTTCA+GGG | + | chr2_4:2006190-2006209 | Msa0308060:CDS | 30.0% |
| AGGAATCAAGAATAAGAAGA+TGG | - | chr2_4:2006532-2006551 | None:intergenic | 30.0% | |
| TGTTAAGTTAGATGTAGCTA+AGG | - | chr2_4:2006567-2006586 | None:intergenic | 30.0% | |
| AACATCACTGCAAGTAAAAT+TGG | - | chr2_4:2006595-2006614 | None:intergenic | 30.0% | |
| ! | TAATCTGATTTTGCATCCAA+AGG | - | chr2_4:2006701-2006720 | None:intergenic | 30.0% |
| GATTAAGCAAAGCAATGTAA+AGG | + | chr2_4:2006716-2006735 | Msa0308060:CDS | 30.0% | |
| TGAATAGCAAAAGACACTTT+CGG | - | chr2_4:2006907-2006926 | None:intergenic | 30.0% | |
| ! | GTGTTTTATGTTCGTTAGTT+TGG | + | chr2_4:2006977-2006996 | Msa0308060:intron | 30.0% |
| TTTATAAACGATTGTCCAAC+TGG | - | chr2_4:2007209-2007228 | None:intergenic | 30.0% | |
| CCAAATGTGAATGTAATGTT+TGG | - | chr2_4:2007254-2007273 | None:intergenic | 30.0% | |
| CCAAACATTACATTCACATT+TGG | + | chr2_4:2007251-2007270 | Msa0308060:CDS | 30.0% | |
| AACATACATAGGAAGGAAAA+TGG | - | chr2_4:2007427-2007446 | None:intergenic | 30.0% | |
| ACTCTTTAACATACATAGGA+AGG | - | chr2_4:2007434-2007453 | None:intergenic | 30.0% | |
| ACACACTCTTTAACATACAT+AGG | - | chr2_4:2007438-2007457 | None:intergenic | 30.0% | |
| TAAAGAAACCAGATACACTA+CGG | - | chr2_4:2007488-2007507 | None:intergenic | 30.0% | |
| ! | ACTTTAAGAACATACTGAGA+AGG | - | chr2_4:2007536-2007555 | None:intergenic | 30.0% |
| ATAAGTATGTATTACCAGAG+GGG | - | chr2_4:2007635-2007654 | None:intergenic | 30.0% | |
| GATAAGTATGTATTACCAGA+GGG | - | chr2_4:2007636-2007655 | None:intergenic | 30.0% | |
| TGATAAGTATGTATTACCAG+AGG | - | chr2_4:2007637-2007656 | None:intergenic | 30.0% | |
| GTATAGATATATGTACATGC+AGG | + | chr2_4:2007743-2007762 | Msa0308060:intron | 30.0% | |
| AGTATGTAGATAATGTCTAC+TGG | + | chr2_4:2007918-2007937 | Msa0308060:three_prime_UTR | 30.0% | |
| !! | TAGATAATGTCTACTGGTTT+AGG | + | chr2_4:2007924-2007943 | Msa0308060:three_prime_UTR | 30.0% |
| AATACTCACACTCACTATTA+TGG | - | chr2_4:2007974-2007993 | None:intergenic | 30.0% | |
| TTGGATTTGGACTCTATCTT+TGG | + | chr2_4:2003723-2003742 | Msa0308060:CDS | 35.0% | |
| !! | AACACAACATTGAAGTACTG+TGG | - | chr2_4:2003958-2003977 | None:intergenic | 35.0% |
| TTCAATGTTGTGTTTGACAC+TGG | + | chr2_4:2003964-2003983 | Msa0308060:CDS | 35.0% | |
| TTTCATTCGAAGTATAGGTC+CGG | + | chr2_4:2004161-2004180 | Msa0308060:CDS | 35.0% | |
| TCTAGCACCTATAACGAAAT+TGG | + | chr2_4:2004188-2004207 | Msa0308060:CDS | 35.0% | |
| AAATGTATCCTTCGTCATAC+GGG | - | chr2_4:2004308-2004327 | None:intergenic | 35.0% | |
| AGCCAAGACAATGTAAAAGT+TGG | + | chr2_4:2004339-2004358 | Msa0308060:CDS | 35.0% | |
| GCCAAGACAATGTAAAAGTT+GGG | + | chr2_4:2004340-2004359 | Msa0308060:CDS | 35.0% | |
| CCAAGACAATGTAAAAGTTG+GGG | + | chr2_4:2004341-2004360 | Msa0308060:CDS | 35.0% | |
| ! | AGGAATTTTGCGAGATTACA+AGG | + | chr2_4:2004483-2004502 | Msa0308060:intron | 35.0% |
| ! | GGAATTTTGCGAGATTACAA+GGG | + | chr2_4:2004484-2004503 | Msa0308060:intron | 35.0% |
| !!! | CTTTTAGCTCTTCCATTTGA+TGG | + | chr2_4:2004521-2004540 | Msa0308060:CDS | 35.0% |
| ! | CTTCCATTTGATGGTATACT+TGG | + | chr2_4:2004530-2004549 | Msa0308060:CDS | 35.0% |
| AGTCCAAGTATACCATCAAA+TGG | - | chr2_4:2004536-2004555 | None:intergenic | 35.0% | |
| ! | TTTGATGGTATACTTGGACT+TGG | + | chr2_4:2004536-2004555 | Msa0308060:CDS | 35.0% |
| TATACTTGGACTTGGATTTC+AGG | + | chr2_4:2004544-2004563 | Msa0308060:CDS | 35.0% | |
| GATTTCAGGATGTTTCAGTT+GGG | + | chr2_4:2004558-2004577 | Msa0308060:CDS | 35.0% | |
| ATCTGCAAATATTACCACAC+TGG | - | chr2_4:2004593-2004612 | None:intergenic | 35.0% | |
| CTAGTACTAATCTGAGAAAG+TGG | - | chr2_4:2004799-2004818 | None:intergenic | 35.0% | |
| !! | GATAGAACAAGGGCATATTT+TGG | + | chr2_4:2004986-2005005 | Msa0308060:CDS | 35.0% |
| GAGAAATTGGAAAGTAAGTG+TGG | - | chr2_4:2005109-2005128 | None:intergenic | 35.0% | |
| CAATAACCCTCTTGAGAAAT+TGG | - | chr2_4:2005122-2005141 | None:intergenic | 35.0% | |
| CAATTTCTCAAGAGGGTTAT+TGG | + | chr2_4:2005120-2005139 | Msa0308060:CDS | 35.0% | |
| TTTGTATCTGCAGATTGAAG+TGG | + | chr2_4:2005214-2005233 | Msa0308060:intron | 35.0% | |
| TTGTATCTGCAGATTGAAGT+GGG | + | chr2_4:2005215-2005234 | Msa0308060:intron | 35.0% | |
| TGAAGTTGCTAAAGAATGCA+TGG | + | chr2_4:2005372-2005391 | Msa0308060:intron | 35.0% | |
| GCTAAAGAATGCATGGTATT+AGG | + | chr2_4:2005379-2005398 | Msa0308060:intron | 35.0% | |
| AAAGAATGCATGGTATTAGG+TGG | + | chr2_4:2005382-2005401 | Msa0308060:intron | 35.0% | |
| !! | TGAAAGGCATTCAATTTCCA+TGG | + | chr2_4:2005434-2005453 | Msa0308060:intron | 35.0% |
| !! | TTAGTTCTACACAATAGCCA+TGG | - | chr2_4:2005454-2005473 | None:intergenic | 35.0% |
| GGCTATTGTGTAGAACTAAA+AGG | + | chr2_4:2005455-2005474 | Msa0308060:intron | 35.0% | |
| ! | TGATTTCGTAGGTTTGAGTT+AGG | + | chr2_4:2005618-2005637 | Msa0308060:intron | 35.0% |
| GTGTGTATCCAAAATACGTT+AGG | + | chr2_4:2005668-2005687 | Msa0308060:intron | 35.0% | |
| ACTCAAATTAACCATGCCAT+TGG | + | chr2_4:2006108-2006127 | Msa0308060:CDS | 35.0% | |
| AACAAATCCTTCTGTTCCAA+TGG | - | chr2_4:2006127-2006146 | None:intergenic | 35.0% | |
| !! | ATGGGAATCATTGATTTCAG+GGG | + | chr2_4:2006191-2006210 | Msa0308060:CDS | 35.0% |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr2_4:2006302-2006321 | None:intergenic | 35.0% | |
| ATGTCAGCACATAAGATTTC+AGG | - | chr2_4:2006463-2006482 | None:intergenic | 35.0% | |
| AGCTAAGGAATGTGTCATAA+AGG | - | chr2_4:2006552-2006571 | None:intergenic | 35.0% | |
| CAGTGATGTTATTGAAACAG+TGG | + | chr2_4:2006605-2006624 | Msa0308060:intron | 35.0% | |
| AGTGGTGCATAATGAAAGTT+GGG | + | chr2_4:2006623-2006642 | Msa0308060:CDS | 35.0% | |
| CAAAAGAGACTCTCTCTTAA+TGG | - | chr2_4:2006657-2006676 | None:intergenic | 35.0% | |
| TTTGCAATATGGTTGTCCTT+TGG | + | chr2_4:2006682-2006701 | Msa0308060:CDS | 35.0% | |
| AATAGCAAAAGACACTTTCG+GGG | - | chr2_4:2006905-2006924 | None:intergenic | 35.0% | |
| GAATAGCAAAAGACACTTTC+GGG | - | chr2_4:2006906-2006925 | None:intergenic | 35.0% | |
| !!! | GTGTCTTTTGCTATTCAGTT+TGG | + | chr2_4:2006910-2006929 | Msa0308060:intron | 35.0% |
| !!! | TTCTTTTAAAGTTGTGCGAG+AGG | + | chr2_4:2007174-2007193 | Msa0308060:intron | 35.0% |
| GTTGAAATACAAACCTGTTC+TGG | - | chr2_4:2007299-2007318 | None:intergenic | 35.0% | |
| AATGCGAAATGAATGAATGC+AGG | - | chr2_4:2007396-2007415 | None:intergenic | 35.0% | |
| GAACATACTGAGAAGGAAAA+AGG | - | chr2_4:2007529-2007548 | None:intergenic | 35.0% | |
| CTTAAAGTTGAATCAGACGA+TGG | + | chr2_4:2007548-2007567 | Msa0308060:CDS | 35.0% | |
| ! | TGTTGGAGATATTTTCTTGC+AGG | + | chr2_4:2007768-2007787 | Msa0308060:CDS | 35.0% |
| CAGATTCTGCAAATCCTATA+CGG | - | chr2_4:2007825-2007844 | None:intergenic | 35.0% | |
| ! | GGTTTAGGTAAGAGTATGTA+AGG | + | chr2_4:2007939-2007958 | Msa0308060:three_prime_UTR | 35.0% |
| ! | TGCTGGTTGTTACATGTCTT+TGG | + | chr2_4:2003704-2003723 | Msa0308060:CDS | 40.0% |
| !! | ACAACATTGAAGTACTGTGG+TGG | - | chr2_4:2003955-2003974 | None:intergenic | 40.0% |
| !! | ACACTGGTAGCTCTAATCTT+TGG | + | chr2_4:2003980-2003999 | Msa0308060:CDS | 40.0% |
| !! | CACTGGTAGCTCTAATCTTT+GGG | + | chr2_4:2003981-2004000 | Msa0308060:CDS | 40.0% |
| GAGAAGATGCATCTTGAAGA+TGG | - | chr2_4:2004009-2004028 | None:intergenic | 40.0% | |
| TTCATTCGAAGTATAGGTCC+GGG | + | chr2_4:2004162-2004181 | Msa0308060:CDS | 40.0% | |
| GTTATAGGTGCTAGATATCC+CGG | - | chr2_4:2004183-2004202 | None:intergenic | 40.0% | |
| ! | CCCCAACTTTTACATTGTCT+TGG | - | chr2_4:2004344-2004363 | None:intergenic | 40.0% |
| !!! | CTGGTTGCTTTTCATCATTC+AGG | + | chr2_4:2004463-2004482 | Msa0308060:intron | 40.0% |
| ! | TTTTGCGAGATTACAAGGGA+AGG | + | chr2_4:2004488-2004507 | Msa0308060:CDS | 40.0% |
| GGATTTCAGGATGTTTCAGT+TGG | + | chr2_4:2004557-2004576 | Msa0308060:CDS | 40.0% | |
| CACATGTGTCAGTGTAGTAT+CGG | - | chr2_4:2004760-2004779 | None:intergenic | 40.0% | |
| !! | GTGATTAAGTCTGTTTCTGC+AGG | + | chr2_4:2004955-2004974 | Msa0308060:intron | 40.0% |
| ! | TGGACAAAGTTTTCTCCCTA+TGG | + | chr2_4:2005006-2005025 | Msa0308060:CDS | 40.0% |
| !!! | GTGGACAAGAAGCATTTTAG+AGG | + | chr2_4:2005080-2005099 | Msa0308060:CDS | 40.0% |
| TGTATCTGCAGATTGAAGTG+GGG | + | chr2_4:2005216-2005235 | Msa0308060:intron | 40.0% | |
| GCATGGTATTAGGTGGTTAA+TGG | + | chr2_4:2005389-2005408 | Msa0308060:intron | 40.0% | |
| CTTCAGATGTCAAGTCTAGA+GGG | + | chr2_4:2005721-2005740 | Msa0308060:intron | 40.0% | |
| !! | CAAAACTGGTTTGTAAGGTG+AGG | - | chr2_4:2005821-2005840 | None:intergenic | 40.0% |
| ATGAACATGAGTGCCAACAA+CGG | - | chr2_4:2005891-2005910 | None:intergenic | 40.0% | |
| TTTACAGGTTTATGTCAGGG+TGG | + | chr2_4:2005949-2005968 | Msa0308060:intron | 40.0% | |
| GAGATGATATACAGTTGGAC+CGG | - | chr2_4:2006013-2006032 | None:intergenic | 40.0% | |
| CAGTGGTGCATAATGAAAGT+TGG | + | chr2_4:2006622-2006641 | Msa0308060:CDS | 40.0% | |
| GTGCATAATGAAAGTTGGGA+TGG | + | chr2_4:2006627-2006646 | Msa0308060:CDS | 40.0% | |
| ACGATTGTCCAACTGGATTT+GGG | - | chr2_4:2007202-2007221 | None:intergenic | 40.0% | |
| AACGATTGTCCAACTGGATT+TGG | - | chr2_4:2007203-2007222 | None:intergenic | 40.0% | |
| GAATGTATCCGTAGTGTATC+TGG | + | chr2_4:2007477-2007496 | Msa0308060:intron | 40.0% | |
| ATATGTACATGCAGGGTTGT+TGG | + | chr2_4:2007751-2007770 | Msa0308060:intron | 40.0% | |
| TGCAAATCCTATACGGAGAT+TGG | - | chr2_4:2007818-2007837 | None:intergenic | 40.0% | |
| !! | TCAATTGAGTTGGGAATCTG+TGG | + | chr2_4:2008055-2008074 | Msa0308060:three_prime_UTR | 40.0% |
| CGATACTACACTGACACATG+TGG | + | chr2_4:2004758-2004777 | Msa0308060:intron | 45.0% | |
| ATCAATGTCAATGTCGTGCG+TGG | + | chr2_4:2004828-2004847 | Msa0308060:intron | 45.0% | |
| AAGGATCCAATGGCAGAAGT+AGG | + | chr2_4:2005035-2005054 | Msa0308060:CDS | 45.0% | |
| GTAGGTGGTGAGATTGTCTT+TGG | + | chr2_4:2005053-2005072 | Msa0308060:CDS | 45.0% | |
| !! | TGAGATTGTCTTTGGTGGTG+TGG | + | chr2_4:2005061-2005080 | Msa0308060:CDS | 45.0% |
| TTCTCAAGAGGGTTATTGGC+AGG | + | chr2_4:2005124-2005143 | Msa0308060:CDS | 45.0% | |
| GTATCTGCAGATTGAAGTGG+GGG | + | chr2_4:2005217-2005236 | Msa0308060:intron | 45.0% | |
| CACTCATGCTATTCACTCAC+AGG | - | chr2_4:2005345-2005364 | None:intergenic | 45.0% | |
| CGAAATCAGCTCGTAAGGTT+GGG | - | chr2_4:2005606-2005625 | None:intergenic | 45.0% | |
| ACGAAATCAGCTCGTAAGGT+TGG | - | chr2_4:2005607-2005626 | None:intergenic | 45.0% | |
| ! | ACCTTACGAGCTGATTTCGT+AGG | + | chr2_4:2005607-2005626 | Msa0308060:intron | 45.0% |
| ACCTACGAAATCAGCTCGTA+AGG | - | chr2_4:2005611-2005630 | None:intergenic | 45.0% | |
| ACTCGAGGAAACATGATAGC+GGG | - | chr2_4:2005697-2005716 | None:intergenic | 45.0% | |
| GACTCGAGGAAACATGATAG+CGG | - | chr2_4:2005698-2005717 | None:intergenic | 45.0% | |
| GCTTCAGATGTCAAGTCTAG+AGG | + | chr2_4:2005720-2005739 | Msa0308060:intron | 45.0% | |
| ATGTCAAGTCTAGAGGGTGA+TGG | + | chr2_4:2005727-2005746 | Msa0308060:intron | 45.0% | |
| TGTCAAGTCTAGAGGGTGAT+GGG | + | chr2_4:2005728-2005747 | Msa0308060:intron | 45.0% | |
| TCGGGGACTACTTTAATTGC+CGG | + | chr2_4:2005991-2006010 | Msa0308060:CDS | 45.0% | |
| AACCATGCCATTGGAACAGA+AGG | + | chr2_4:2006117-2006136 | Msa0308060:CDS | 45.0% | |
| ATCCTTCTGTTCCAATGGCA+TGG | - | chr2_4:2006122-2006141 | None:intergenic | 45.0% | |
| TGTTCTCCTGTGTGCTATAG+CGG | + | chr2_4:2007575-2007594 | Msa0308060:CDS | 45.0% | |
| ACAAAACCGCTATAGCACAC+AGG | - | chr2_4:2007584-2007603 | None:intergenic | 45.0% | |
| !!! | TATTTTATAACTTTATTTTT+CGG | + | chr2_4:2007116-2007135 | Msa0308060:intron | 5.0% |
| TCGTCATACGGGATTTCGCA+TGG | - | chr2_4:2004297-2004316 | None:intergenic | 50.0% | |
| TGCGAAATCCCGTATGACGA+AGG | + | chr2_4:2004297-2004316 | Msa0308060:CDS | 50.0% | |
| TTGGGAAAGTCACACCAGTG+TGG | + | chr2_4:2004576-2004595 | Msa0308060:CDS | 50.0% | |
| GATCCAATGGCAGAAGTAGG+TGG | + | chr2_4:2005038-2005057 | Msa0308060:CDS | 50.0% | |
| TCACCACCTACTTCTGCCAT+TGG | - | chr2_4:2005044-2005063 | None:intergenic | 50.0% | |
| GGTGGTGAGATTGTCTTTGG+TGG | + | chr2_4:2005056-2005075 | Msa0308060:CDS | 50.0% | |
| !! | TCGAGGAAACATGATAGCGG+GGG | - | chr2_4:2005695-2005714 | None:intergenic | 50.0% |
| ! | CTCGAGGAAACATGATAGCG+GGG | - | chr2_4:2005696-2005715 | None:intergenic | 50.0% |
| ! | GACATCTGAAGCATGACTCG+AGG | - | chr2_4:2005712-2005731 | None:intergenic | 50.0% |
| !! | AAATACGCTGGTGCCGTTGT+TGG | + | chr2_4:2005875-2005894 | Msa0308060:intron | 50.0% |
| !! | CTGTGCTGCAATAGTGGACT+CGG | + | chr2_4:2005972-2005991 | Msa0308060:CDS | 50.0% |
| !! | TGTGCTGCAATAGTGGACTC+GGG | + | chr2_4:2005973-2005992 | Msa0308060:CDS | 50.0% |
| GACTATCCACCTACGAAGCA+CGG | + | chr2_4:2006253-2006272 | Msa0308060:intron | 50.0% | |
| TGTTCGTATCCGTGCTTCGT+AGG | - | chr2_4:2006265-2006284 | None:intergenic | 50.0% | |
| ACGAAGCACGGATACGAACA+CGG | + | chr2_4:2006265-2006284 | Msa0308060:intron | 50.0% | |
| ACAACACCCTCGCACGTTTA+GGG | + | chr2_4:2007071-2007090 | Msa0308060:intron | 50.0% | |
| GTTTCCTCTCTCTCCAGAAC+AGG | + | chr2_4:2007283-2007302 | Msa0308060:CDS | 50.0% | |
| !! | CAAACCTGTTCTGGAGAGAG+AGG | - | chr2_4:2007290-2007309 | None:intergenic | 50.0% |
| GACTACGCCAATCTCCGTAT+AGG | + | chr2_4:2007808-2007827 | Msa0308060:CDS | 50.0% | |
| CACTGACACGTGACAGAGAC+TGG | - | chr2_4:2004730-2004749 | None:intergenic | 55.0% | |
| !! | CGAGGAAACATGATAGCGGG+GGG | - | chr2_4:2005694-2005713 | None:intergenic | 55.0% |
| !! | GTGCTGCAATAGTGGACTCG+GGG | + | chr2_4:2005974-2005993 | Msa0308060:CDS | 55.0% |
| TCGTATCCGTGCTTCGTAGG+TGG | - | chr2_4:2006262-2006281 | None:intergenic | 55.0% | |
| TATGTGCCAGTGTCCGACAC+CGG | + | chr2_4:2006344-2006363 | Msa0308060:intron | 55.0% | |
| AATTAGGCGTGTCCCGGTGT+CGG | - | chr2_4:2006360-2006379 | None:intergenic | 55.0% | |
| TCCTCGAATTAGGCGTGTCC+CGG | - | chr2_4:2006366-2006385 | None:intergenic | 55.0% | |
| GCACGGACACTCCTCGAATT+AGG | - | chr2_4:2006376-2006395 | None:intergenic | 55.0% | |
| GACAACACCCTCGCACGTTT+AGG | + | chr2_4:2007070-2007089 | Msa0308060:intron | 55.0% | |
| CTTCGTCCCTAAACGTGCGA+GGG | - | chr2_4:2007080-2007099 | None:intergenic | 55.0% | |
| TCTTCGTCCCTAAACGTGCG+AGG | - | chr2_4:2007081-2007100 | None:intergenic | 55.0% | |
| GAGAGGCTCCCAAATCCAGT+TGG | + | chr2_4:2007191-2007210 | Msa0308060:CDS | 55.0% | |
| TCTTGATGTGCCTTCCCCAC+AGG | + | chr2_4:2007607-2007626 | Msa0308060:CDS | 55.0% | |
| CTTGATGTGCCTTCCCCACA+GGG | + | chr2_4:2007608-2007627 | Msa0308060:CDS | 55.0% | |
| ATTACCAGAGGGGACCCTGT+GGG | - | chr2_4:2007625-2007644 | None:intergenic | 55.0% | |
| TATTACCAGAGGGGACCCTG+TGG | - | chr2_4:2007626-2007645 | None:intergenic | 55.0% | |
| ! | GCGGGGGGCCTAACGTATTT+TGG | - | chr2_4:2005679-2005698 | None:intergenic | 60.0% |
| GGGTGGCTGTGCTGCAATAG+TGG | + | chr2_4:2005966-2005985 | Msa0308060:CDS | 60.0% | |
| ATGTGCCAGTGTCCGACACC+GGG | + | chr2_4:2006345-2006364 | Msa0308060:intron | 60.0% | |
| ACCGGGACACGCCTAATTCG+AGG | + | chr2_4:2006362-2006381 | Msa0308060:intron | 60.0% | |
| TTACCAGAGGGGACCCTGTG+GGG | - | chr2_4:2007624-2007643 | None:intergenic | 60.0% | |
| ! | CGTGTCCCGGTGTCGGACAC+TGG | - | chr2_4:2006353-2006372 | None:intergenic | 70.0% |
| CAGAGGGGACCCTGTGGGGA+AGG | - | chr2_4:2007620-2007639 | None:intergenic | 70.0% | |
| CTTCCCCACAGGGTCCCCTC+TGG | + | chr2_4:2007618-2007637 | Msa0308060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 2003393 | 2008084 | 2003393 | ID=Msa0308060;Name=Msa0308060 |
| chr2_4 | mRNA | 2003393 | 2008084 | 2003393 | ID=Msa0308060-mRNA-1;Parent=Msa0308060;Name=Msa0308060-mRNA-1;_AED=0.26;_eAED=0.26;_QI=29|1|1|1|0.92|0.85|14|235|527 |
| chr2_4 | exon | 2003393 | 2003478 | 2003393 | ID=Msa0308060-mRNA-1:exon:479;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2003685 | 2004029 | 2003685 | ID=Msa0308060-mRNA-1:exon:480;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2004149 | 2004209 | 2004149 | ID=Msa0308060-mRNA-1:exon:481;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2004289 | 2004383 | 2004289 | ID=Msa0308060-mRNA-1:exon:482;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2004485 | 2004597 | 2004485 | ID=Msa0308060-mRNA-1:exon:483;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2004977 | 2005145 | 2004977 | ID=Msa0308060-mRNA-1:exon:484;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2005227 | 2005266 | 2005227 | ID=Msa0308060-mRNA-1:exon:485;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2005956 | 2006020 | 2005956 | ID=Msa0308060-mRNA-1:exon:486;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2006099 | 2006212 | 2006099 | ID=Msa0308060-mRNA-1:exon:487;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2006454 | 2006518 | 2006454 | ID=Msa0308060-mRNA-1:exon:488;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2006608 | 2006764 | 2006608 | ID=Msa0308060-mRNA-1:exon:489;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2007185 | 2007304 | 2007185 | ID=Msa0308060-mRNA-1:exon:490;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2007542 | 2007639 | 2007542 | ID=Msa0308060-mRNA-1:exon:491;Parent=Msa0308060-mRNA-1 |
| chr2_4 | exon | 2007765 | 2008084 | 2007765 | ID=Msa0308060-mRNA-1:exon:492;Parent=Msa0308060-mRNA-1 |
| chr2_4 | five_prime_UTR | 2003393 | 2003421 | 2003393 | ID=Msa0308060-mRNA-1:five_prime_utr;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2003422 | 2003478 | 2003422 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2003685 | 2004029 | 2003685 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2004149 | 2004209 | 2004149 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2004289 | 2004383 | 2004289 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2004485 | 2004597 | 2004485 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2004977 | 2005145 | 2004977 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2005227 | 2005266 | 2005227 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2005956 | 2006020 | 2005956 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2006099 | 2006212 | 2006099 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2006454 | 2006518 | 2006454 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2006608 | 2006764 | 2006608 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2007185 | 2007304 | 2007185 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2007542 | 2007639 | 2007542 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | CDS | 2007765 | 2007849 | 2007765 | ID=Msa0308060-mRNA-1:cds;Parent=Msa0308060-mRNA-1 |
| chr2_4 | three_prime_UTR | 2007850 | 2008084 | 2007850 | ID=Msa0308060-mRNA-1:three_prime_utr;Parent=Msa0308060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
