AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021980 MtrunA17_Chr1g0173891 95.430 372 4 2 136 494 1 372 0.0 718
Msa0021980 MtrunA17_Chr1g0186021 38.395 349 199 5 113 447 122 468 4.64e-75 245
Msa0021980 MtrunA17_Chr8g0380251 35.695 367 211 8 100 449 86 444 6.67e-67 222
Msa0021980 MtrunA17_Chr1g0173881 94.444 108 6 0 1 108 1 108 1.32e-55 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021980 AT3G57680.1 74.142 437 95 3 75 494 84 519 0.0 673
Msa0021980 AT3G57680.3 73.243 370 82 2 142 494 1 370 0.0 561
Msa0021980 AT3G57680.2 73.243 370 82 2 142 494 1 370 0.0 561
Msa0021980 AT4G17740.2 40.286 350 191 6 113 447 124 470 6.27e-77 250
Msa0021980 AT4G17740.1 40.286 350 191 6 113 447 134 480 9.97e-77 250
Msa0021980 AT5G46390.2 33.609 363 216 6 104 449 114 468 4.84e-58 200
Msa0021980 AT5G46390.1 27.586 290 185 6 104 376 114 395 1.54e-28 117

Find 119 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACAAACCTACCAAATT+TGG 0.155558 1_1:-40115384 None:intergenic
AGAAAGCATTCCACTGATTT+TGG 0.230739 1_1:-40117036 None:intergenic
TAAAGTATCAAAACCAAATT+TGG 0.263043 1_1:+40115371 Msa0021980:CDS
TTCTTTACTTTGATTAATCT+TGG 0.277428 1_1:-40115297 None:intergenic
TGAAGAGAAGAAGGTGAATA+AGG 0.298888 1_1:+40115473 Msa0021980:CDS
GATGAATTAGTTGAAATAAA+TGG 0.303515 1_1:+40117890 Msa0021980:CDS
TCTGCAGGGGAGAGGCTTAA+TGG 0.311415 1_1:+40118057 Msa0021980:intron
TGAGATTGAGGCCTTATCTT+TGG 0.316864 1_1:-40120731 None:intergenic
GTTTGTTTCCTCGTAGGTTA+TGG 0.324357 1_1:+40115397 Msa0021980:CDS
TGAAGCATGGGGTTTGATTC+GGG 0.349053 1_1:+40116735 Msa0021980:CDS
TTGAAGCATGGGGTTTGATT+CGG 0.352478 1_1:+40116734 Msa0021980:CDS
TGACATGCGAAATGCTATTC+AGG 0.354095 1_1:+40119214 Msa0021980:CDS
TCTTTGGTTGATAGTTCCTT+TGG 0.354259 1_1:-40120715 None:intergenic
CTGACCAAATGTCCTGTTCT+TGG 0.355413 1_1:-40117578 None:intergenic
CTTGTAGGGAACAAAACATT+TGG 0.358811 1_1:+40120102 Msa0021980:CDS
CGGAAGTGATGGAAACTTGC+AGG 0.367201 1_1:+40117529 Msa0021980:CDS
GGAAGCAGATTCATGCATTA+TGG 0.377657 1_1:+40120759 Msa0021980:CDS
TCTGTCTTGCACTGAACGTC+TGG 0.380415 1_1:-40120682 None:intergenic
ACCTCAGGTGCGCGTGAAAC+GGG 0.383496 1_1:-40115624 None:intergenic
GGTGCAGCACAGAGGCTTAG+AGG 0.393697 1_1:+40118093 Msa0021980:CDS
CGTGATGCCCATGTTGTTGT+TGG 0.405184 1_1:-40115426 None:intergenic
TGTTCAAGAAACAGTCCCTT+TGG 0.409726 1_1:-40120812 None:intergenic
TTCGTACTTACAGGAATATC+AGG 0.418545 1_1:+40117496 Msa0021980:intron
GACCTCAGGTGCGCGTGAAA+CGG 0.420484 1_1:-40115625 None:intergenic
ATTTGGAAAAGGAAAGATTC+AGG 0.435352 1_1:+40120119 Msa0021980:CDS
TAAGGCCTCAATCTCATCTC+TGG 0.437628 1_1:+40120738 Msa0021980:CDS
GGTGAATAAGGTAGTGGTAG+TGG 0.444264 1_1:+40115485 Msa0021980:CDS
TGAGCCAAGAACAGGACATT+TGG 0.445795 1_1:+40117574 Msa0021980:CDS
GTTGCTCAGATGTGGTTAGA+TGG 0.450686 1_1:+40119417 Msa0021980:CDS
GGAATGATAGCACTTGATAT+TGG 0.452751 1_1:-40118683 None:intergenic
GAAGAGGAAGGTGTCGTTTG+AGG 0.459539 1_1:+40115449 Msa0021980:CDS
TGAATACCGGCACGAGCAGC+TGG 0.467849 1_1:-40117860 None:intergenic
ATAAATGTTGAGCCAAGAAC+AGG 0.474577 1_1:+40117566 Msa0021980:CDS
GTTTGAGGTTGAAGAGAAGA+AGG 0.481856 1_1:+40115464 Msa0021980:CDS
AACGGTCGAGCAATTCTTGT+AGG 0.484638 1_1:+40120087 Msa0021980:CDS
GGGAACAAAACATTTGGAAA+AGG 0.484863 1_1:+40120108 Msa0021980:CDS
AAGAACTCTTGTTGAAGCAT+GGG 0.485105 1_1:+40116723 Msa0021980:CDS
TTCATCTCCTTGATGAATAC+CGG 0.491367 1_1:-40117873 None:intergenic
AGTGGAATGCTTTCTACACT+TGG 0.497192 1_1:+40117044 Msa0021980:CDS
CACTAGAATTATTAGTCCGA+AGG 0.501167 1_1:+40117076 Msa0021980:CDS
GAAATTGTCAACCTTCTCTC+AGG 0.507010 1_1:+40118748 Msa0021980:CDS
CAGAGGCTTAGAGGGAATGC+TGG 0.507723 1_1:+40118102 Msa0021980:CDS
CAGGGTGGTTTGGTAAAAGC+AGG 0.508692 1_1:+40119387 Msa0021980:intron
ATGGCCATTGATCATATTGA+TGG 0.511224 1_1:-40119487 None:intergenic
AAAGAACTCTTGTTGAAGCA+TGG 0.512172 1_1:+40116722 Msa0021980:CDS
AGAACATGAGTTGGATATGA+AGG 0.513377 1_1:+40120786 Msa0021980:CDS
CGACCTGATCTATGTCATGA+AGG 0.514048 1_1:-40120651 None:intergenic
TTCATGACATAGATCAGGTC+GGG 0.516139 1_1:+40120653 Msa0021980:CDS
GAAGAAGGTGAATAAGGTAG+TGG 0.517619 1_1:+40115479 Msa0021980:CDS
GATGGAAACTTGCAGGGAGT+TGG 0.519602 1_1:+40117536 Msa0021980:CDS
GGAACTATCAACCAAAGATA+AGG 0.519630 1_1:+40120720 Msa0021980:CDS
GTGCAGCACAGAGGCTTAGA+GGG 0.523821 1_1:+40118094 Msa0021980:CDS
TCACCCATCAATATGATCAA+TGG 0.524362 1_1:+40119483 Msa0021980:CDS
TGATCTATGTCATGAAGGGC+TGG 0.525259 1_1:-40120646 None:intergenic
TTCTTGAACATTGTACTGAA+AGG 0.525452 1_1:+40120825 Msa0021980:exon
AACAGTCCAGCTGCTCGTGC+CGG 0.526284 1_1:+40117854 Msa0021980:CDS
TCACAGATCCTCAGAAGGGC+AGG 0.527833 1_1:+40118706 Msa0021980:CDS
GAATATCAGGGATTTAGAAT+CGG 0.529054 1_1:+40117509 Msa0021980:CDS
AAACGGGAAAAGCAACGGTA+AGG 0.529370 1_1:-40115608 None:intergenic
TATTGAATGATATATACAAT+CGG 0.529881 1_1:-40120966 None:intergenic
TCCCGTTTCACGCGCACCTG+AGG 0.532170 1_1:+40115623 Msa0021980:CDS
AGCCCTTCATGACATAGATC+AGG 0.537489 1_1:+40120648 Msa0021980:CDS
GCTGGGGCATTACATGATAA+CGG 0.540171 1_1:+40120069 Msa0021980:CDS
GGATTTAGAATCGGAAGTGA+TGG 0.544179 1_1:+40117518 Msa0021980:CDS
TGGTAGGTTTGTTTCCTCGT+AGG 0.548540 1_1:+40115391 Msa0021980:CDS
ATACCTTGATGATTAAATGT+AGG 0.550456 1_1:-40116772 None:intergenic
GTATCAAAACCAAATTTGGT+AGG 0.555122 1_1:+40115375 Msa0021980:CDS
GCCTTGATGTTGCTCAGATG+TGG 0.555679 1_1:+40119409 Msa0021980:CDS
ACTCATACATACTTGATCTA+CGG 0.556612 1_1:+40119258 Msa0021980:CDS
TATGGTAGCAGAACATGAGT+TGG 0.558734 1_1:+40120777 Msa0021980:CDS
GTGAATACGATTGATAGAGA+TGG 0.558990 1_1:+40119453 Msa0021980:CDS
GATCTGATTCTGCAGGGGAG+AGG 0.559857 1_1:+40118049 Msa0021980:intron
TTGGCTCAACATTTATGAAG+AGG 0.560601 1_1:-40117559 None:intergenic
GTACTCACAATCACTACAAG+TGG 0.563845 1_1:-40119525 None:intergenic
GATCCTACATTTAATCATCA+AGG 0.565895 1_1:+40116769 Msa0021980:CDS
GGACTAATAATTCTAGTGAA+AGG 0.566046 1_1:-40117071 None:intergenic
CAACATGGGCATCACGGAAG+AGG 0.568371 1_1:+40115433 Msa0021980:CDS
AGTGTTACTCAGCTTCATGA+TGG 0.569185 1_1:+40120586 Msa0021980:CDS
GGTTACTACCAACAACAACA+TGG 0.570072 1_1:+40115418 Msa0021980:CDS
TGCCCCAGCTAAAATCTCGC+TGG 0.571370 1_1:-40120055 None:intergenic
TGCTTCCAGAGATGAGATTG+AGG 0.571908 1_1:-40120743 None:intergenic
GACAGAAATGCTTTCACCAA+AGG 0.573147 1_1:+40120699 Msa0021980:CDS
GAGAGCTTGATATACTCCCT+TGG 0.574347 1_1:-40118659 None:intergenic
TGGAACAACTGTTACAGTAA+AGG 0.574531 1_1:+40118122 Msa0021980:CDS
AGGGATTGAGAGAGAGCTGT+TGG 0.579896 1_1:-40115588 None:intergenic
CAACAACAACATGGGCATCA+CGG 0.583305 1_1:+40115427 Msa0021980:CDS
TGGATATGAAGGATTCCAAA+GGG 0.591184 1_1:+40120797 Msa0021980:CDS
AACGGGAAAAGCAACGGTAA+GGG 0.591378 1_1:-40115607 None:intergenic
GCTCGTGCCGGTATTCATCA+AGG 0.592072 1_1:+40117866 Msa0021980:CDS
AGAACTCTTGTTGAAGCATG+GGG 0.593442 1_1:+40116724 Msa0021980:CDS
TAATTTAGGTTAAATTACCA+AGG 0.597741 1_1:+40118642 Msa0021980:intron
ACGGTCGAGCAATTCTTGTA+GGG 0.597993 1_1:+40120088 Msa0021980:CDS
GTGGATCATGTGTTATAGCA+TGG 0.598447 1_1:-40119506 None:intergenic
ATCAGCCCTCTTTGTTACAG+TGG 0.602610 1_1:+40120609 Msa0021980:CDS
ACCACATCTGAGCAACATCA+AGG 0.604021 1_1:-40119410 None:intergenic
GCTGCATCAGCTGAGTTCAA+AGG 0.605499 1_1:-40117008 None:intergenic
GACCTGATCTATGTCATGAA+GGG 0.610507 1_1:-40120650 None:intergenic
TGTGTATATATATAAAGTAG+TGG 0.611544 1_1:+40120941 Msa0021980:three_prime_UTR
AATTTAGGTTAAATTACCAA+GGG 0.612832 1_1:+40118643 Msa0021980:intron
GAAGTTGCAGCAAACAATGG+TGG 0.613750 1_1:+40116977 Msa0021980:CDS
ATTCCTCACAGATCCTCAGA+AGG 0.614153 1_1:+40118701 Msa0021980:CDS
TCGTACTTACAGGAATATCA+GGG 0.618631 1_1:+40117497 Msa0021980:intron
GGAAGTGATGGAAACTTGCA+GGG 0.622269 1_1:+40117530 Msa0021980:CDS
ATGGGCATCACGGAAGAGGA+AGG 0.625191 1_1:+40115437 Msa0021980:CDS
GTTAGATGGAGATGAGACTC+TGG 0.626212 1_1:+40119431 Msa0021980:CDS
TTGGATATGAAGGATTCCAA+AGG 0.629055 1_1:+40120796 Msa0021980:CDS
TATGAAGTTGCAGCAAACAA+TGG 0.629584 1_1:+40116974 Msa0021980:CDS
CTTAATGGCATTGATAGTGA+AGG 0.632924 1_1:+40118072 Msa0021980:CDS
GCAGCCTACACCAAAATCAG+TGG 0.643480 1_1:+40117026 Msa0021980:CDS
CTTCATGACATAGATCAGGT+CGG 0.643951 1_1:+40120652 Msa0021980:CDS
TTCCTCACAGATCCTCAGAA+GGG 0.645666 1_1:+40118702 Msa0021980:CDS
GTTACTACCAACAACAACAT+GGG 0.656333 1_1:+40115419 Msa0021980:CDS
GCGTGAAACGGGAAAAGCAA+CGG 0.664518 1_1:-40115613 None:intergenic
TTTCCTCAACAGGTCAACGA+GGG 0.669643 1_1:+40120021 Msa0021980:intron
TGGCCATTGATCATATTGAT+GGG 0.677501 1_1:-40119486 None:intergenic
GTTTCCTCAACAGGTCAACG+AGG 0.686788 1_1:+40120020 Msa0021980:intron
TGCCCTTCTGAGGATCTGTG+AGG 0.713131 1_1:-40118704 None:intergenic
ATAGTGAAGGTGCAGCACAG+AGG 0.775625 1_1:+40118085 Msa0021980:CDS
GGTAGTAACCATAACCTACG+AGG 0.780903 1_1:-40115405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATATATAATATATGA+AGG - chr1_1:40115916-40115935 None:intergenic 10.0%
!!! ATAACTTTTAAAAAAATGAA+AGG + chr1_1:40115985-40116004 Msa0021980:intron 10.0%
!!! TAACTTTTAAAAAAATGAAA+GGG + chr1_1:40115986-40116005 Msa0021980:intron 10.0%
!!! TTATTTTAATTGCTTTTTAT+TGG + chr1_1:40116425-40116444 Msa0021980:intron 10.0%
!!! AATTTTCTTTTATTTGAAAA+TGG + chr1_1:40118027-40118046 Msa0021980:intron 10.0%
!!! AATAAAAAAGTGTTAGAAAA+AGG + chr1_1:40115755-40115774 Msa0021980:intron 15.0%
!! ACATATTAAAAATCTCAAAA+GGG - chr1_1:40116075-40116094 None:intergenic 15.0%
!!! ATGATTTTTCTTTTCTTTAT+GGG - chr1_1:40116356-40116375 None:intergenic 15.0%
!!! TATGATTTTTCTTTTCTTTA+TGG - chr1_1:40116357-40116376 None:intergenic 15.0%
!! TAAAGAAAAGAAAAATCATA+TGG + chr1_1:40116357-40116376 Msa0021980:intron 15.0%
!! AATTAAAATAATACCAACAA+GGG - chr1_1:40116416-40116435 None:intergenic 15.0%
!!! TTTTTGCATTATAATTCAAA+GGG + chr1_1:40116486-40116505 Msa0021980:intron 15.0%
!! ACTAAATAAAACTAAGAATT+TGG + chr1_1:40116513-40116532 Msa0021980:intron 15.0%
!! TGTATCTTACTTTAATTATA+AGG + chr1_1:40117370-40117389 Msa0021980:intron 15.0%
!! GTATCTTACTTTAATTATAA+GGG + chr1_1:40117371-40117390 Msa0021980:intron 15.0%
!!! AATTAAAGTCTTATGTTTAA+CGG + chr1_1:40117470-40117489 Msa0021980:intron 15.0%
!!! TCAGATTTTTATTTTTCAAA+AGG - chr1_1:40117804-40117823 None:intergenic 15.0%
!!! ATATTTTAGAATAACTAACT+TGG - chr1_1:40117922-40117941 None:intergenic 15.0%
!!! TTTCTTTTTATTGGAATTAT+GGG + chr1_1:40118303-40118322 Msa0021980:intron 15.0%
!! ATATTAAGATAAAGTTTGTA+CGG - chr1_1:40118870-40118889 None:intergenic 15.0%
!! TACAAACTTTATCTTAATAT+AGG + chr1_1:40118870-40118889 Msa0021980:intron 15.0%
!! ACATAAACATTTATATGATA+AGG + chr1_1:40119100-40119119 Msa0021980:intron 15.0%
!! AACAAAGTTGTTTATTAAAA+AGG + chr1_1:40119141-40119160 Msa0021980:intron 15.0%
!! ACAAAGTTGTTTATTAAAAA+GGG + chr1_1:40119142-40119161 Msa0021980:intron 15.0%
!!! TTTTTTCATAATTTTCCTTT+TGG - chr1_1:40120220-40120239 None:intergenic 15.0%
!! TATTGAATGATATATACAAT+CGG - chr1_1:40120969-40120988 None:intergenic 15.0%
!!! TTTTCCTAATACAATATTTT+TGG + chr1_1:40121042-40121061 Msa0021980:three_prime_UTR 15.0%
!! TTCTTTACTTTGATTAATCT+TGG - chr1_1:40115300-40115319 None:intergenic 20.0%
!!! AAATTTGGTTTTGATACTTT+AGG - chr1_1:40115372-40115391 None:intergenic 20.0%
!!! TAAAGTATCAAAACCAAATT+TGG + chr1_1:40115371-40115390 Msa0021980:CDS 20.0%
!!! ATCTGAAATTCACATTTTTA+AGG + chr1_1:40115844-40115863 Msa0021980:intron 20.0%
!!! ATTTTTAAGGTTAACAAGTA+AGG + chr1_1:40115857-40115876 Msa0021980:intron 20.0%
!!! TTTTTTTTCTTTAACTCAGT+TGG - chr1_1:40115942-40115961 None:intergenic 20.0%
!! GACATATTAAAAATCTCAAA+AGG - chr1_1:40116076-40116095 None:intergenic 20.0%
!! CAATTAAAATAATACCAACA+AGG - chr1_1:40116417-40116436 None:intergenic 20.0%
!! CTTTGAATTATAATGCAAAA+AGG - chr1_1:40116487-40116506 None:intergenic 20.0%
!!! CTTTTTGCATTATAATTCAA+AGG + chr1_1:40116485-40116504 Msa0021980:intron 20.0%
!! TTATTTGTAATTAAGACCTT+CGG - chr1_1:40117095-40117114 None:intergenic 20.0%
!! AAAAAGTAGTAACTTAAGAT+AGG + chr1_1:40117161-40117180 Msa0021980:intron 20.0%
!! CCAATAACATTACTATATAT+TGG - chr1_1:40117196-40117215 None:intergenic 20.0%
!! CCAATATATAGTAATGTTAT+TGG + chr1_1:40117193-40117212 Msa0021980:intron 20.0%
!! AATGTTAAAAGTCATATTTG+TGG + chr1_1:40117395-40117414 Msa0021980:intron 20.0%
!! AGACAATCATAGTTTAAAAA+AGG - chr1_1:40117780-40117799 None:intergenic 20.0%
!! AATAAAAATCTGAAAATCAC+AGG + chr1_1:40117811-40117830 Msa0021980:intron 20.0%
!! GATGAATTAGTTGAAATAAA+TGG + chr1_1:40117890-40117909 Msa0021980:CDS 20.0%
!!! ATTACTATTTCATTTTCACA+AGG - chr1_1:40118010-40118029 None:intergenic 20.0%
!!! AACTTTCAGTTTCTTTTTAT+TGG + chr1_1:40118294-40118313 Msa0021980:intron 20.0%
!!! GTTTCTTTTTATTGGAATTA+TGG + chr1_1:40118302-40118321 Msa0021980:intron 20.0%
!!! TTCTTTTTATTGGAATTATG+GGG + chr1_1:40118304-40118323 Msa0021980:intron 20.0%
!! ATTATATATTAGACCATCAA+TGG - chr1_1:40118626-40118645 None:intergenic 20.0%
!! GATGGTCTAATATATAATTT+AGG + chr1_1:40118628-40118647 Msa0021980:intron 20.0%
!!! TAATTTAGGTTAAATTACCA+AGG + chr1_1:40118642-40118661 Msa0021980:intron 20.0%
!!! AATTTAGGTTAAATTACCAA+GGG + chr1_1:40118643-40118662 Msa0021980:intron 20.0%
!! TATTAAGATAAAGTTTGTAC+GGG - chr1_1:40118869-40118888 None:intergenic 20.0%
!! CAAAGTTGTTTATTAAAAAG+GGG + chr1_1:40119143-40119162 Msa0021980:intron 20.0%
!!! AACTGAAATTTTCATGAAAA+TGG - chr1_1:40119301-40119320 None:intergenic 20.0%
!! AAATGAACGATAAAAAATTC+AGG - chr1_1:40119894-40119913 None:intergenic 20.0%
!! CATTATGTAACAAAAAATAC+TGG - chr1_1:40120147-40120166 None:intergenic 20.0%
!! TATTAAGCAATATTTCCAAA+AGG + chr1_1:40120202-40120221 Msa0021980:intron 20.0%
!! AAGGAAAATTATGAAAAAAG+AGG + chr1_1:40120221-40120240 Msa0021980:intron 20.0%
!!! TCTATTTCTCAAATTATTAC+CGG + chr1_1:40120447-40120466 Msa0021980:intron 20.0%
!! TGTGTATATATATAAAGTAG+TGG + chr1_1:40120941-40120960 Msa0021980:three_prime_UTR 20.0%
!! TTGTCCAAAAATATTGTATT+AGG - chr1_1:40121049-40121068 None:intergenic 20.0%
!!! AAAAAAGTGTTAGAAAAAGG+AGG + chr1_1:40115758-40115777 Msa0021980:intron 25.0%
!!! AAAAAGTGTTAGAAAAAGGA+GGG + chr1_1:40115759-40115778 Msa0021980:intron 25.0%
!!! CAATGGTAACTAATTTTAAC+TGG - chr1_1:40115797-40115816 None:intergenic 25.0%
! CAAAATTTAGATGTCAACAA+TGG - chr1_1:40115814-40115833 None:intergenic 25.0%
! AAAAGGGATAATTCACAAAA+GGG - chr1_1:40116059-40116078 None:intergenic 25.0%
!! TTTTTCTTTTCTTTATGGGA+AGG - chr1_1:40116352-40116371 None:intergenic 25.0%
!!! AAAGGAGTACTACTTATTTT+GGG - chr1_1:40116469-40116488 None:intergenic 25.0%
!!! AAAAGGAGTACTACTTATTT+TGG - chr1_1:40116470-40116489 None:intergenic 25.0%
! TTAACAAACTCGAGTATTTA+TGG - chr1_1:40116631-40116650 None:intergenic 25.0%
!! ATACCTTGATGATTAAATGT+AGG - chr1_1:40116775-40116794 None:intergenic 25.0%
! ATGCATTCTATATGCAAATT+TGG - chr1_1:40116847-40116866 None:intergenic 25.0%
!!! TACACTTTTTCTTGTAGATT+GGG + chr1_1:40116950-40116969 Msa0021980:intron 25.0%
! AGATCAACAAATCTGTTTAA+AGG + chr1_1:40117271-40117290 Msa0021980:intron 25.0%
! TGTTTAAAGGTCATGTTAAT+TGG + chr1_1:40117284-40117303 Msa0021980:intron 25.0%
! TTAAAAGTCATATTTGTGGT+TGG + chr1_1:40117399-40117418 Msa0021980:intron 25.0%
!! AATTTTCATGCTTATTGTTC+TGG + chr1_1:40117651-40117670 Msa0021980:intron 25.0%
! TTAAAAAAGGAAATCAACAC+AGG - chr1_1:40117767-40117786 None:intergenic 25.0%
!! ACCTTGACTACTTTAAAAAA+TGG + chr1_1:40118334-40118353 Msa0021980:intron 25.0%
!! CCTTGACTACTTTAAAAAAT+GGG + chr1_1:40118335-40118354 Msa0021980:intron 25.0%
! TATCTAGTACTATACTCAAA+TGG - chr1_1:40118434-40118453 None:intergenic 25.0%
!! AAATTTTCAACTTTACCTCA+CGG - chr1_1:40118512-40118531 None:intergenic 25.0%
! AATTCACAATATTCCATTGA+TGG + chr1_1:40118610-40118629 Msa0021980:intron 25.0%
!!! CTTTAGTTTATCTTTTGTTC+TGG + chr1_1:40119066-40119085 Msa0021980:intron 25.0%
! ATTCAGGAAATGAAAAATCA+AGG + chr1_1:40119230-40119249 Msa0021980:CDS 25.0%
! TCATGAAAATGGTAAATTAC+AGG - chr1_1:40119290-40119309 None:intergenic 25.0%
!! AAAATTTCAGGTAAAAACGT+AGG - chr1_1:40119363-40119382 None:intergenic 25.0%
! AGGTAAGTAAAGTCTATATA+AGG - chr1_1:40119699-40119718 None:intergenic 25.0%
! CAAGTGGATATTTATATGAA+AGG - chr1_1:40119787-40119806 None:intergenic 25.0%
! GGTAATGTAATGTATATATG+AGG + chr1_1:40120242-40120261 Msa0021980:intron 25.0%
!! ACTTTTAAACAGAAAACACT+CGG - chr1_1:40120293-40120312 None:intergenic 25.0%
!!! TTTGGTTTTGATACTTTAGG+TGG - chr1_1:40115369-40115388 None:intergenic 30.0%
GTATCAAAACCAAATTTGGT+AGG + chr1_1:40115375-40115394 Msa0021980:CDS 30.0%
!!! GCAAAAAGTGCTTTTAGATT+TGG + chr1_1:40115525-40115544 Msa0021980:CDS 30.0%
! AAAACTTGTTCAACATACAG+TGG - chr1_1:40115716-40115735 None:intergenic 30.0%
!!! CTAACACTTTTTTATTGCGT+GGG - chr1_1:40115751-40115770 None:intergenic 30.0%
!!! TCTAACACTTTTTTATTGCG+TGG - chr1_1:40115752-40115771 None:intergenic 30.0%
AACAAGTAAGGTAACAAGTA+AGG + chr1_1:40115869-40115888 Msa0021980:intron 30.0%
! TTTTCTTTAACTCAGTTGGT+AGG - chr1_1:40115938-40115957 None:intergenic 30.0%
CAAAAGGGATAATTCACAAA+AGG - chr1_1:40116060-40116079 None:intergenic 30.0%
GTTACAATGCAAAATGTAAC+TGG - chr1_1:40116599-40116618 None:intergenic 30.0%
! GTTACATTTTGCATTGTAAC+TGG + chr1_1:40116599-40116618 Msa0021980:intron 30.0%
GATCCTACATTTAATCATCA+AGG + chr1_1:40116769-40116788 Msa0021980:CDS 30.0%
TATGCAAATTTGGTACTTGA+AGG - chr1_1:40116837-40116856 None:intergenic 30.0%
TGCATCATACTAACATCTAT+TGG + chr1_1:40116862-40116881 Msa0021980:intron 30.0%
TCGACAGATCAAATAACAAA+AGG + chr1_1:40116927-40116946 Msa0021980:intron 30.0%
!!! GTACACTTTTTCTTGTAGAT+TGG + chr1_1:40116949-40116968 Msa0021980:intron 30.0%
GGACTAATAATTCTAGTGAA+AGG - chr1_1:40117074-40117093 None:intergenic 30.0%
!! CAGATTTGTTGATCTAAGAA+TGG - chr1_1:40117266-40117285 None:intergenic 30.0%
! GTAAGATACATTTGATGATC+CGG - chr1_1:40117360-40117379 None:intergenic 30.0%
! GAATATCAGGGATTTAGAAT+CGG + chr1_1:40117509-40117528 Msa0021980:CDS 30.0%
! TTCTAGCTGCTAACTTTAAA+AGG - chr1_1:40117732-40117751 None:intergenic 30.0%
AAAAGAAAACAATGTGTCGA+AGG - chr1_1:40118253-40118272 None:intergenic 30.0%
!!! CCCATTTTTTAAAGTAGTCA+AGG - chr1_1:40118338-40118357 None:intergenic 30.0%
CTTGAAAACTTATCTTCTCT+AGG + chr1_1:40118458-40118477 Msa0021980:intron 30.0%
! TTTGAGATCAAAATGGTAGT+TGG - chr1_1:40118840-40118859 None:intergenic 30.0%
! GAAGTAGTTTGAGATCAAAA+TGG - chr1_1:40118847-40118866 None:intergenic 30.0%
ACAAGATGAAAACAGCTTAT+CGG - chr1_1:40118984-40119003 None:intergenic 30.0%
TATGGTACAGGATAAGTTTA+TGG - chr1_1:40119169-40119188 None:intergenic 30.0%
GTCAATAATCAATATGGTAC+AGG - chr1_1:40119181-40119200 None:intergenic 30.0%
CACTCTGTCAATAATCAATA+TGG - chr1_1:40119187-40119206 None:intergenic 30.0%
ACTCATACATACTTGATCTA+CGG + chr1_1:40119258-40119277 Msa0021980:CDS 30.0%
! TTTCAGTTTTACCACATCTT+TGG + chr1_1:40119313-40119332 Msa0021980:intron 30.0%
! TTTACCTGAAATTTTGTTGC+AGG + chr1_1:40119368-40119387 Msa0021980:intron 30.0%
! TTACCTGAAATTTTGTTGCA+GGG + chr1_1:40119369-40119388 Msa0021980:intron 30.0%
TAATAATCCCAAGTTTGGTT+AGG - chr1_1:40119722-40119741 None:intergenic 30.0%
TAACCAAACTTGGGATTATT+AGG + chr1_1:40119721-40119740 Msa0021980:intron 30.0%
AACCAAACTTGGGATTATTA+GGG + chr1_1:40119722-40119741 Msa0021980:intron 30.0%
ATGACTAAAAGAAATGCAAG+TGG - chr1_1:40119803-40119822 None:intergenic 30.0%
!!! GTTTTGTTGATAATTCACCT+TGG - chr1_1:40119861-40119880 None:intergenic 30.0%
ATTTGGAAAAGGAAAGATTC+AGG + chr1_1:40120119-40120138 Msa0021980:CDS 30.0%
ACATGTATCAGTATTGTGTT+CGG - chr1_1:40120411-40120430 None:intergenic 30.0%
ATGAGATTGACTGAAATGAA+AGG - chr1_1:40120543-40120562 None:intergenic 30.0%
TTTCATTTCAGTCAATCTCA+TGG + chr1_1:40120542-40120561 Msa0021980:intron 30.0%
TTCTTGAACATTGTACTGAA+AGG + chr1_1:40120825-40120844 Msa0021980:exon 30.0%
GGAAACAAACCTACCAAATT+TGG - chr1_1:40115387-40115406 None:intergenic 35.0%
GTTACTACCAACAACAACAT+GGG + chr1_1:40115419-40115438 Msa0021980:CDS 35.0%
TGAAGAGAAGAAGGTGAATA+AGG + chr1_1:40115473-40115492 Msa0021980:CDS 35.0%
GAAAATGACAAAACCCTTGT+TGG + chr1_1:40116400-40116419 Msa0021980:intron 35.0%
TAAGTGTGATAATACTCGCA+GGG + chr1_1:40116567-40116586 Msa0021980:intron 35.0%
CAAACTCGAGTATTTATGGA+CGG - chr1_1:40116627-40116646 None:intergenic 35.0%
TGAACCATGCTTAGTTGAAA+AGG + chr1_1:40116674-40116693 Msa0021980:intron 35.0%
GAACCATGCTTAGTTGAAAA+GGG + chr1_1:40116675-40116694 Msa0021980:intron 35.0%
! AAACCCTTTTCAACTAAGCA+TGG - chr1_1:40116681-40116700 None:intergenic 35.0%
AAAGAACTCTTGTTGAAGCA+TGG + chr1_1:40116722-40116741 Msa0021980:CDS 35.0%
AAGAACTCTTGTTGAAGCAT+GGG + chr1_1:40116723-40116742 Msa0021980:CDS 35.0%
TATGAAGTTGCAGCAAACAA+TGG + chr1_1:40116974-40116993 Msa0021980:CDS 35.0%
!!! AGAAAGCATTCCACTGATTT+TGG - chr1_1:40117039-40117058 None:intergenic 35.0%
CACTAGAATTATTAGTCCGA+AGG + chr1_1:40117076-40117095 Msa0021980:CDS 35.0%
ATCTCACTTACTTTCGTTTC+TGG + chr1_1:40117131-40117150 Msa0021980:intron 35.0%
TTCGTACTTACAGGAATATC+AGG + chr1_1:40117496-40117515 Msa0021980:intron 35.0%
TCGTACTTACAGGAATATCA+GGG + chr1_1:40117497-40117516 Msa0021980:intron 35.0%
TTGGCTCAACATTTATGAAG+AGG - chr1_1:40117562-40117581 None:intergenic 35.0%
ATAAATGTTGAGCCAAGAAC+AGG + chr1_1:40117566-40117585 Msa0021980:CDS 35.0%
TAAAGTTAGCAGCTAGAACT+CGG + chr1_1:40117734-40117753 Msa0021980:intron 35.0%
TTCATCTCCTTGATGAATAC+CGG - chr1_1:40117876-40117895 None:intergenic 35.0%
AAAATGGATCTGATTCTGCA+GGG + chr1_1:40118043-40118062 Msa0021980:intron 35.0%
!! CTTAATGGCATTGATAGTGA+AGG + chr1_1:40118072-40118091 Msa0021980:CDS 35.0%
TGGAACAACTGTTACAGTAA+AGG + chr1_1:40118122-40118141 Msa0021980:CDS 35.0%
TGTTACAGTAAAGGTCCATT+GGG + chr1_1:40118131-40118150 Msa0021980:intron 35.0%
GAAACTGTGATATTTCCCAA+TGG - chr1_1:40118149-40118168 None:intergenic 35.0%
AGTGTACGAGAGATTTCTTA+TGG + chr1_1:40118361-40118380 Msa0021980:intron 35.0%
ACTCAAATGGTCTAGAAAAC+TGG - chr1_1:40118421-40118440 None:intergenic 35.0%
TAGAAACTCTTATATCCGTG+AGG + chr1_1:40118494-40118513 Msa0021980:intron 35.0%
GGAATGATAGCACTTGATAT+TGG - chr1_1:40118686-40118705 None:intergenic 35.0%
AGAATCACCTGTACAAAAAC+TGG + chr1_1:40118779-40118798 Msa0021980:intron 35.0%
! TAGACATCCAGTTTTTGTAC+AGG - chr1_1:40118789-40118808 None:intergenic 35.0%
!! CTTGTTTTCGTAAGCTTTCT+AGG + chr1_1:40118999-40119018 Msa0021980:intron 35.0%
! GTTTTACCACATCTTTGGAT+CGG + chr1_1:40119318-40119337 Msa0021980:intron 35.0%
GTGAATACGATTGATAGAGA+TGG + chr1_1:40119453-40119472 Msa0021980:CDS 35.0%
TCACCCATCAATATGATCAA+TGG + chr1_1:40119483-40119502 Msa0021980:CDS 35.0%
TGGCCATTGATCATATTGAT+GGG - chr1_1:40119489-40119508 None:intergenic 35.0%
ATGGCCATTGATCATATTGA+TGG - chr1_1:40119490-40119509 None:intergenic 35.0%
TATAAGGATTGTTCCAGTGA+CGG - chr1_1:40119683-40119702 None:intergenic 35.0%
! AATTCACCTTGGTAACATAG+AGG - chr1_1:40119850-40119869 None:intergenic 35.0%
ATTGCCATTCATCAAACTAG+CGG - chr1_1:40119996-40120015 None:intergenic 35.0%
!! GCAATTTTTGTTTCCTCAAC+AGG + chr1_1:40120011-40120030 Msa0021980:intron 35.0%
CTTGTAGGGAACAAAACATT+TGG + chr1_1:40120102-40120121 Msa0021980:CDS 35.0%
GGGAACAAAACATTTGGAAA+AGG + chr1_1:40120108-40120127 Msa0021980:CDS 35.0%
TGTCCAAAACTAACACGTAT+CGG + chr1_1:40120377-40120396 Msa0021980:intron 35.0%
CATGTATCAGTATTGTGTTC+GGG - chr1_1:40120410-40120429 None:intergenic 35.0%
GAACACAATACTGATACATG+TGG + chr1_1:40120410-40120429 Msa0021980:intron 35.0%
! TTTTGCCACTGTAACAAAGA+GGG - chr1_1:40120617-40120636 None:intergenic 35.0%
! ATTTTGCCACTGTAACAAAG+AGG - chr1_1:40120618-40120637 None:intergenic 35.0%
!! TCTTTGGTTGATAGTTCCTT+TGG - chr1_1:40120718-40120737 None:intergenic 35.0%
GGAACTATCAACCAAAGATA+AGG + chr1_1:40120720-40120739 Msa0021980:CDS 35.0%
! AGAACATGAGTTGGATATGA+AGG + chr1_1:40120786-40120805 Msa0021980:CDS 35.0%
TTGGATATGAAGGATTCCAA+AGG + chr1_1:40120796-40120815 Msa0021980:CDS 35.0%
TGGATATGAAGGATTCCAAA+GGG + chr1_1:40120797-40120816 Msa0021980:CDS 35.0%
GTTTGTTTCCTCGTAGGTTA+TGG + chr1_1:40115397-40115416 Msa0021980:CDS 40.0%
GGTTACTACCAACAACAACA+TGG + chr1_1:40115418-40115437 Msa0021980:CDS 40.0%
! GTTTGAGGTTGAAGAGAAGA+AGG + chr1_1:40115464-40115483 Msa0021980:CDS 40.0%
GAAGAAGGTGAATAAGGTAG+TGG + chr1_1:40115479-40115498 Msa0021980:CDS 40.0%
! AAGGTAACAAGTAAGGTGTC+TGG + chr1_1:40115876-40115895 Msa0021980:intron 40.0%
! AGGTAACAAGTAAGGTGTCT+GGG + chr1_1:40115877-40115896 Msa0021980:intron 40.0%
CTAAGTGTGATAATACTCGC+AGG + chr1_1:40116566-40116585 Msa0021980:intron 40.0%
!! GTTGAAAAGGGTTTGTTGCT+AGG + chr1_1:40116687-40116706 Msa0021980:intron 40.0%
AGAACTCTTGTTGAAGCATG+GGG + chr1_1:40116724-40116743 Msa0021980:CDS 40.0%
TTGAAGCATGGGGTTTGATT+CGG + chr1_1:40116734-40116753 Msa0021980:CDS 40.0%
!!! CATTCCACTGATTTTGGTGT+AGG - chr1_1:40117033-40117052 None:intergenic 40.0%
AGTGGAATGCTTTCTACACT+TGG + chr1_1:40117044-40117063 Msa0021980:CDS 40.0%
TGCCAATGAACTATAATCGC+CGG + chr1_1:40117338-40117357 Msa0021980:intron 40.0%
ATCCGGCGATTATAGTTCAT+TGG - chr1_1:40117343-40117362 None:intergenic 40.0%
TAACGGTGATTCGTACTTAC+AGG + chr1_1:40117487-40117506 Msa0021980:intron 40.0%
! GGATTTAGAATCGGAAGTGA+TGG + chr1_1:40117518-40117537 Msa0021980:CDS 40.0%
GAAAATGGATCTGATTCTGC+AGG + chr1_1:40118042-40118061 Msa0021980:intron 40.0%
AAATGGATCTGATTCTGCAG+GGG + chr1_1:40118044-40118063 Msa0021980:intron 40.0%
CTGTTACAGTAAAGGTCCAT+TGG + chr1_1:40118130-40118149 Msa0021980:intron 40.0%
GAAATTGTCAACCTTCTCTC+AGG + chr1_1:40118748-40118767 Msa0021980:CDS 40.0%
CGACTGTATGATAGAACTTG+TGG + chr1_1:40118941-40118960 Msa0021980:intron 40.0%
TGACATGCGAAATGCTATTC+AGG + chr1_1:40119214-40119233 Msa0021980:CDS 40.0%
! AATTTTGTTGCAGGGTGGTT+TGG + chr1_1:40119377-40119396 Msa0021980:intron 40.0%
GTGGATCATGTGTTATAGCA+TGG - chr1_1:40119509-40119528 None:intergenic 40.0%
GTACTCACAATCACTACAAG+TGG - chr1_1:40119528-40119547 None:intergenic 40.0%
ACTTACCTCCTAACCAAACT+TGG + chr1_1:40119711-40119730 Msa0021980:intron 40.0%
CTTACCTCCTAACCAAACTT+GGG + chr1_1:40119712-40119731 Msa0021980:intron 40.0%
TAATCCCAAGTTTGGTTAGG+AGG - chr1_1:40119719-40119738 None:intergenic 40.0%
AGCCCTAATAATCCCAAGTT+TGG - chr1_1:40119727-40119746 None:intergenic 40.0%
ATCTACTACACCTGTTTCGA+GGG - chr1_1:40119756-40119775 None:intergenic 40.0%
TATCTACTACACCTGTTTCG+AGG - chr1_1:40119757-40119776 None:intergenic 40.0%
GTCATTCTTGTATGTTTCCC+TGG + chr1_1:40119818-40119837 Msa0021980:intron 40.0%
! CAAACCGCTAGTTTGATGAA+TGG + chr1_1:40119989-40120008 Msa0021980:intron 40.0%
TCGTGTACCAAGCATATTGA+CGG + chr1_1:40120312-40120331 Msa0021980:intron 40.0%
ATGAGAACAGACACGAACAT+TGG - chr1_1:40120501-40120520 None:intergenic 40.0%
! AGTGTTACTCAGCTTCATGA+TGG + chr1_1:40120586-40120605 Msa0021980:CDS 40.0%
GACCTGATCTATGTCATGAA+GGG - chr1_1:40120653-40120672 None:intergenic 40.0%
CTTCATGACATAGATCAGGT+CGG + chr1_1:40120652-40120671 Msa0021980:CDS 40.0%
TTCATGACATAGATCAGGTC+GGG + chr1_1:40120653-40120672 Msa0021980:CDS 40.0%
GACAGAAATGCTTTCACCAA+AGG + chr1_1:40120699-40120718 Msa0021980:CDS 40.0%
! TGAGATTGAGGCCTTATCTT+TGG - chr1_1:40120734-40120753 None:intergenic 40.0%
GGAAGCAGATTCATGCATTA+TGG + chr1_1:40120759-40120778 Msa0021980:CDS 40.0%
TATGGTAGCAGAACATGAGT+TGG + chr1_1:40120777-40120796 Msa0021980:CDS 40.0%
TGTTCAAGAAACAGTCCCTT+TGG - chr1_1:40120815-40120834 None:intergenic 40.0%
! TGGTAGGTTTGTTTCCTCGT+AGG + chr1_1:40115391-40115410 Msa0021980:CDS 45.0%
GGTAGTAACCATAACCTACG+AGG - chr1_1:40115408-40115427 None:intergenic 45.0%
CAACAACAACATGGGCATCA+CGG + chr1_1:40115427-40115446 Msa0021980:CDS 45.0%
! GGTGAATAAGGTAGTGGTAG+TGG + chr1_1:40115485-40115504 Msa0021980:CDS 45.0%
AACGGGAAAAGCAACGGTAA+GGG - chr1_1:40115610-40115629 None:intergenic 45.0%
AAACGGGAAAAGCAACGGTA+AGG - chr1_1:40115611-40115630 None:intergenic 45.0%
! GGTAACAAGTAAGGTGTCTG+GGG + chr1_1:40115878-40115897 Msa0021980:intron 45.0%
TGTGATAATACTCGCAGGGA+CGG + chr1_1:40116571-40116590 Msa0021980:intron 45.0%
TGAAGCATGGGGTTTGATTC+GGG + chr1_1:40116735-40116754 Msa0021980:CDS 45.0%
GAAGTTGCAGCAAACAATGG+TGG + chr1_1:40116977-40116996 Msa0021980:CDS 45.0%
! GGAAGTGATGGAAACTTGCA+GGG + chr1_1:40117530-40117549 Msa0021980:CDS 45.0%
TGAGCCAAGAACAGGACATT+TGG + chr1_1:40117574-40117593 Msa0021980:CDS 45.0%
CTGACCAAATGTCCTGTTCT+TGG - chr1_1:40117581-40117600 None:intergenic 45.0%
GAGAGCTTGATATACTCCCT+TGG - chr1_1:40118662-40118681 None:intergenic 45.0%
ATTCCTCACAGATCCTCAGA+AGG + chr1_1:40118701-40118720 Msa0021980:CDS 45.0%
TTCCTCACAGATCCTCAGAA+GGG + chr1_1:40118702-40118721 Msa0021980:CDS 45.0%
! TTTTATGACCTGCCCTTCTG+AGG - chr1_1:40118717-40118736 None:intergenic 45.0%
GAAGGGCAGGTCATAAAAAC+TGG + chr1_1:40118719-40118738 Msa0021980:CDS 45.0%
! TCTTTTGCTCACCTGAGAGA+AGG - chr1_1:40118762-40118781 None:intergenic 45.0%
GTTACACCGATCCAAAGATG+TGG - chr1_1:40119327-40119346 None:intergenic 45.0%
CCACCCTGCAACAAAATTTC+AGG - chr1_1:40119375-40119394 None:intergenic 45.0%
! CCTGAAATTTTGTTGCAGGG+TGG + chr1_1:40119372-40119391 Msa0021980:intron 45.0%
ACCACATCTGAGCAACATCA+AGG - chr1_1:40119413-40119432 None:intergenic 45.0%
GTTGCTCAGATGTGGTTAGA+TGG + chr1_1:40119417-40119436 Msa0021980:CDS 45.0%
GTTAGATGGAGATGAGACTC+TGG + chr1_1:40119431-40119450 Msa0021980:CDS 45.0%
ACACATGATCCACGAGTGAT+TGG + chr1_1:40119594-40119613 Msa0021980:intron 45.0%
CACATGATCCACGAGTGATT+GGG + chr1_1:40119595-40119614 Msa0021980:intron 45.0%
TTAAGTGACCCAATCACTCG+TGG - chr1_1:40119606-40119625 None:intergenic 45.0%
GAGTGATTGGGTCACTTAAG+TGG + chr1_1:40119607-40119626 Msa0021980:intron 45.0%
TCCAGTGACGGTTTAGACTT+GGG - chr1_1:40119671-40119690 None:intergenic 45.0%
TTCCAGTGACGGTTTAGACT+TGG - chr1_1:40119672-40119691 None:intergenic 45.0%
! TAACATAGAGGCATGGTCCA+GGG - chr1_1:40119838-40119857 None:intergenic 45.0%
ACCATGCCTCTATGTTACCA+AGG + chr1_1:40119841-40119860 Msa0021980:intron 45.0%
! ACCTTGGTAACATAGAGGCA+TGG - chr1_1:40119845-40119864 None:intergenic 45.0%
TTTCCTCAACAGGTCAACGA+GGG + chr1_1:40120021-40120040 Msa0021980:intron 45.0%
! GCTGGGGCATTACATGATAA+CGG + chr1_1:40120069-40120088 Msa0021980:CDS 45.0%
AACGGTCGAGCAATTCTTGT+AGG + chr1_1:40120087-40120106 Msa0021980:CDS 45.0%
ACGGTCGAGCAATTCTTGTA+GGG + chr1_1:40120088-40120107 Msa0021980:CDS 45.0%
GTACCAAGCATATTGACGGT+AGG + chr1_1:40120316-40120335 Msa0021980:intron 45.0%
ACACCTACCGTCAATATGCT+TGG - chr1_1:40120322-40120341 None:intergenic 45.0%
!! GCACCGATACGTGTTAGTTT+TGG - chr1_1:40120383-40120402 None:intergenic 45.0%
ATCAGCCCTCTTTGTTACAG+TGG + chr1_1:40120609-40120628 Msa0021980:CDS 45.0%
TGATCTATGTCATGAAGGGC+TGG - chr1_1:40120649-40120668 None:intergenic 45.0%
AGCCCTTCATGACATAGATC+AGG + chr1_1:40120648-40120667 Msa0021980:CDS 45.0%
CGACCTGATCTATGTCATGA+AGG - chr1_1:40120654-40120673 None:intergenic 45.0%
TAAGGCCTCAATCTCATCTC+TGG + chr1_1:40120738-40120757 Msa0021980:CDS 45.0%
TGCTTCCAGAGATGAGATTG+AGG - chr1_1:40120746-40120765 None:intergenic 45.0%
!! AATAATATATAATATATGAA+GGG - chr1_1:40115915-40115934 None:intergenic 5.0%
CGTGATGCCCATGTTGTTGT+TGG - chr1_1:40115429-40115448 None:intergenic 50.0%
!! GAAGAGGAAGGTGTCGTTTG+AGG + chr1_1:40115449-40115468 Msa0021980:CDS 50.0%
AGGGATTGAGAGAGAGCTGT+TGG - chr1_1:40115591-40115610 None:intergenic 50.0%
GCGTGAAACGGGAAAAGCAA+CGG - chr1_1:40115616-40115635 None:intergenic 50.0%
! AAGGTGTCTGGGGTTTGAAC+TGG + chr1_1:40115888-40115907 Msa0021980:intron 50.0%
GCTGCATCAGCTGAGTTCAA+AGG - chr1_1:40117011-40117030 None:intergenic 50.0%
GCAGCCTACACCAAAATCAG+TGG + chr1_1:40117026-40117045 Msa0021980:CDS 50.0%
! CGGAAGTGATGGAAACTTGC+AGG + chr1_1:40117529-40117548 Msa0021980:CDS 50.0%
GATGGAAACTTGCAGGGAGT+TGG + chr1_1:40117536-40117555 Msa0021980:CDS 50.0%
! ATAGTGAAGGTGCAGCACAG+AGG + chr1_1:40118085-40118104 Msa0021980:CDS 50.0%
!! CAGGGTGGTTTGGTAAAAGC+AGG + chr1_1:40119387-40119406 Msa0021980:intron 50.0%
GCCTTGATGTTGCTCAGATG+TGG + chr1_1:40119409-40119428 Msa0021980:CDS 50.0%
ACCCAAGTCTAAACCGTCAC+TGG + chr1_1:40119667-40119686 Msa0021980:intron 50.0%
! GGCTCATTTTCCCTCGAAAC+AGG + chr1_1:40119743-40119762 Msa0021980:intron 50.0%
! GTAACATAGAGGCATGGTCC+AGG - chr1_1:40119839-40119858 None:intergenic 50.0%
GTTTCCTCAACAGGTCAACG+AGG + chr1_1:40120020-40120039 Msa0021980:intron 50.0%
!! AGTGCCAGCGAGATTTTAGC+TGG + chr1_1:40120051-40120070 Msa0021980:CDS 50.0%
!!! GTGCCAGCGAGATTTTAGCT+GGG + chr1_1:40120052-40120071 Msa0021980:CDS 50.0%
!!! TGCCAGCGAGATTTTAGCTG+GGG + chr1_1:40120053-40120072 Msa0021980:CDS 50.0%
GCTCCAACACCTCAGATTGA+AGG + chr1_1:40120345-40120364 Msa0021980:intron 50.0%
! ACGCCTTCAATCTGAGGTGT+TGG - chr1_1:40120351-40120370 None:intergenic 50.0%
CCAAACACGCCTTCAATCTG+AGG - chr1_1:40120357-40120376 None:intergenic 50.0%
! CCTCAGATTGAAGGCGTGTT+TGG + chr1_1:40120354-40120373 Msa0021980:intron 50.0%
CGACAAAGACATGCTGGTAC+CGG - chr1_1:40120469-40120488 None:intergenic 50.0%
CGGTACCAGCATGTCTTTGT+CGG + chr1_1:40120467-40120486 Msa0021980:intron 50.0%
CTACACCGACAAAGACATGC+TGG - chr1_1:40120475-40120494 None:intergenic 50.0%
TCTGTCTTGCACTGAACGTC+TGG - chr1_1:40120685-40120704 None:intergenic 50.0%
CAACATGGGCATCACGGAAG+AGG + chr1_1:40115433-40115452 Msa0021980:CDS 55.0%
ATGGGCATCACGGAAGAGGA+AGG + chr1_1:40115437-40115456 Msa0021980:CDS 55.0%
! GCTCGTGCCGGTATTCATCA+AGG + chr1_1:40117866-40117885 Msa0021980:CDS 55.0%
GATCTGATTCTGCAGGGGAG+AGG + chr1_1:40118049-40118068 Msa0021980:intron 55.0%
TCTGCAGGGGAGAGGCTTAA+TGG + chr1_1:40118057-40118076 Msa0021980:intron 55.0%
GTGCAGCACAGAGGCTTAGA+GGG + chr1_1:40118094-40118113 Msa0021980:CDS 55.0%
CAGAGGCTTAGAGGGAATGC+TGG + chr1_1:40118102-40118121 Msa0021980:CDS 55.0%
! TGCCCTTCTGAGGATCTGTG+AGG - chr1_1:40118707-40118726 None:intergenic 55.0%
TCACAGATCCTCAGAAGGGC+AGG + chr1_1:40118706-40118725 Msa0021980:CDS 55.0%
CTTCCCTCGTTGACCTGTTG+AGG - chr1_1:40120027-40120046 None:intergenic 55.0%
TGCCCCAGCTAAAATCTCGC+TGG - chr1_1:40120058-40120077 None:intergenic 55.0%
ACCTCAGGTGCGCGTGAAAC+GGG - chr1_1:40115627-40115646 None:intergenic 60.0%
GACCTCAGGTGCGCGTGAAA+CGG - chr1_1:40115628-40115647 None:intergenic 60.0%
GAGAGAGACGAGCTGACCTC+AGG - chr1_1:40115642-40115661 None:intergenic 60.0%
AACAGTCCAGCTGCTCGTGC+CGG + chr1_1:40117854-40117873 Msa0021980:CDS 60.0%
TGAATACCGGCACGAGCAGC+TGG - chr1_1:40117863-40117882 None:intergenic 60.0%
GGTGCAGCACAGAGGCTTAG+AGG + chr1_1:40118093-40118112 Msa0021980:CDS 60.0%
TCCCGTTTCACGCGCACCTG+AGG + chr1_1:40115623-40115642 Msa0021980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 40115284 40121091 40115284 ID=Msa0021980;Name=Msa0021980
chr1_1 mRNA 40115284 40121091 40115284 ID=Msa0021980-mRNA-1;Parent=Msa0021980;Name=Msa0021980-mRNA-1;_AED=0.25;_eAED=0.25;_QI=46|0.9|1|1|1|1|11|260|494
chr1_1 exon 40115284 40115644 40115284 ID=Msa0021980-mRNA-1:exon:12124;Parent=Msa0021980-mRNA-1
chr1_1 exon 40116709 40116790 40116709 ID=Msa0021980-mRNA-1:exon:12125;Parent=Msa0021980-mRNA-1
chr1_1 exon 40116967 40117097 40116967 ID=Msa0021980-mRNA-1:exon:12126;Parent=Msa0021980-mRNA-1
chr1_1 exon 40117509 40117595 40117509 ID=Msa0021980-mRNA-1:exon:12127;Parent=Msa0021980-mRNA-1
chr1_1 exon 40117833 40117911 40117833 ID=Msa0021980-mRNA-1:exon:12128;Parent=Msa0021980-mRNA-1
chr1_1 exon 40118064 40118143 40118064 ID=Msa0021980-mRNA-1:exon:12129;Parent=Msa0021980-mRNA-1
chr1_1 exon 40118650 40118769 40118650 ID=Msa0021980-mRNA-1:exon:12130;Parent=Msa0021980-mRNA-1
chr1_1 exon 40119203 40119289 40119203 ID=Msa0021980-mRNA-1:exon:12131;Parent=Msa0021980-mRNA-1
chr1_1 exon 40119390 40119539 40119390 ID=Msa0021980-mRNA-1:exon:12132;Parent=Msa0021980-mRNA-1
chr1_1 exon 40120033 40120140 40120033 ID=Msa0021980-mRNA-1:exon:12133;Parent=Msa0021980-mRNA-1
chr1_1 exon 40120586 40121091 40120586 ID=Msa0021980-mRNA-1:exon:12134;Parent=Msa0021980-mRNA-1
chr1_1 five_prime_UTR 40115284 40115329 40115284 ID=Msa0021980-mRNA-1:five_prime_utr;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40115330 40115644 40115330 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40116709 40116790 40116709 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40116967 40117097 40116967 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40117509 40117595 40117509 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40117833 40117911 40117833 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40118064 40118143 40118064 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40118650 40118769 40118650 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40119203 40119289 40119203 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40119390 40119539 40119390 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40120033 40120140 40120033 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 CDS 40120586 40120831 40120586 ID=Msa0021980-mRNA-1:cds;Parent=Msa0021980-mRNA-1
chr1_1 three_prime_UTR 40120832 40121091 40120832 ID=Msa0021980-mRNA-1:three_prime_utr;Parent=Msa0021980-mRNA-1
Gene Sequence

>Msa0021980

ATGATGAACTTTGATGTTAAAGCAAGAATAAATATTCCACCTAAAGTATCAAAACCAAATTTGGTAGGTTTGTTTCCTCGTAGGTTATGGTTACTACCAACAACAACATGGGCATCACGGAAGAGGAAGGTGTCGTTTGAGGTTGAAGAGAAGAAGGTGAATAAGGTAGTGGTAGTGGAAAAAATTGAATCAGCTGCAAAAAGTGCTTTTAGATTTGGCTTTTCAGCAGCTCTTTCTTTCTGTATTTTCTGTCATGCACCAACAGCTCTCTCTCAATCCCTTACCGTTGCTTTTCCCGTTTCACGCGCACCTGAGGTGAATGCAGTTCAAAGAACTCTTGTTGAAGCATGGGGTTTGATTCGGGAAACATTTGTCGATCCTACATTTAATCATCAAGATTGGGATATGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCTTTGAACTCAGCTGATGCAGCCTACACCAAAATCAGTGGAATGCTTTCTACACTTGGAGATCCTTTCACTAGAATTATTAGTCCGAAGGAATATCAGGGATTTAGAATCGGAAGTGATGGAAACTTGCAGGGAGTTGGCCTCTTCATAAATGTTGAGCCAAGAACAGGACATTTGGTTGTTTTGTCATGCATAGAAAACAGTCCAGCTGCTCGTGCCGGTATTCATCAAGGAGATGAATTAGTTGAAATAAATGGGGAGAGGCTTAATGGCATTGATAGTGAAGGTGCAGCACAGAGGCTTAGAGGGAATGCTGGAACAACTGTTACAGTAAAGGTTAAATTACCAAGGGAGTATATCAAGCTCTCGCCAATATCAAGTGCTATCATTCCTCACAGATCCTCAGAAGGGCAGGTCATAAAAACTGGTTATGTGAAATTGTCAACCTTCTCTCAGAGTGCTGCTGATGACATGCGAAATGCTATTCAGGAAATGAAAAATCAAGGAGCACACTCATACATACTTGATCTACGGAACAATCCTGGTGGTTTGGTAAAAGCAGGCCTTGATGTTGCTCAGATGTGGTTAGATGGAGATGAGACTCTGGTGAATACGATTGATAGAGATGGAAACATGTCACCCATCAATATGATCAATGGCCATGCTATAACACATGATCCACTTGTAGTGATTGTCAACGAGGGAAGTGCAAGTGCCAGCGAGATTTTAGCTGGGGCATTACATGATAACGGTCGAGCAATTCTTGTAGGGAACAAAACATTTGGAAAAGGAAAGATTCAGAGTGTTACTCAGCTTCATGATGGATCAGCCCTCTTTGTTACAGTGGCAAAATATGTATCACCAGCCCTTCATGACATAGATCAGGTCGGGATAACGCCAGACGTTCAGTGCAAGACAGAAATGCTTTCACCAAAGGAACTATCAACCAAAGATAAGGCCTCAATCTCATCTCTGGAAGCAGATTCATGCATTATGGTAGCAGAACATGAGTTGGATATGAAGGATTCCAAAGGGACTGTTTCTTGA

Protein sequence

>Msa0021980

MMNFDVKARINIPPKVSKPNLVGLFPRRLWLLPTTTWASRKRKVSFEVEEKKVNKVVVVEKIESAAKSAFRFGFSAALSFCIFCHAPTALSQSLTVAFPVSRAPEVNAVQRTLVEAWGLIRETFVDPTFNHQDWDMKLQQTMVEMFPLNSADAAYTKISGMLSTLGDPFTRIISPKEYQGFRIGSDGNLQGVGLFINVEPRTGHLVVLSCIENSPAARAGIHQGDELVEINGERLNGIDSEGAAQRLRGNAGTTVTVKVKLPREYIKLSPISSAIIPHRSSEGQVIKTGYVKLSTFSQSAADDMRNAIQEMKNQGAHSYILDLRNNPGGLVKAGLDVAQMWLDGDETLVNTIDRDGNMSPINMINGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGNKTFGKGKIQSVTQLHDGSALFVTVAKYVSPALHDIDQVGITPDVQCKTEMLSPKELSTKDKASISSLEADSCIMVAEHELDMKDSKGTVS*