AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265620 MtrunA17_Chr8g0347741 79.221 77 16 0 26 102 229 305 5.07e-37 129
Msa0265620 MtrunA17_Chr7g0275321 65.385 78 22 1 30 102 229 306 6.31e-26 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265620 AT2G46270.1 56.452 62 19 2 36 97 226 279 1.46e-12 62.4
Msa0265620 AT2G46270.3 56.452 62 19 2 36 97 226 279 1.46e-12 62.4

Find 77 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTATCTTCAGGCATATTA+TGG 0.170895 2_2:+65968571 Msa0265620:intron
GTTGCCATCGCTTCCATTAC+TGG 0.238359 2_2:-65969219 None:intergenic
GTTGGTGTCTCTATGCTTGT+AGG 0.275884 2_2:-65968958 None:intergenic
TATGTATGGAGTATCTAATT+TGG 0.285343 2_2:-65968123 None:intergenic
GTTGGACCTCTACTTTCTTC+AGG 0.305646 2_2:+65969792 Msa0265620:CDS
CTCATCCTTGTCTACATTCA+TGG 0.328766 2_2:+65968389 Msa0265620:five_prime_UTR
TTTGGAAGCGGCAGTCTCTT+TGG 0.337449 2_2:-65969729 None:intergenic
GCAACCAGTGCTGCAGAAAA+TGG 0.342628 2_2:+65969770 Msa0265620:CDS
GTTTCAATGGAAAGAGAATA+TGG 0.347871 2_2:-65968338 None:intergenic
CGCTTCCATTACTGGAAGTC+TGG 0.357892 2_2:-65969211 None:intergenic
TTAGTAATATAGGATAATTC+AGG 0.376807 2_2:+65968147 Msa0265620:five_prime_UTR
TGTGGAACACTGGTGGAAAT+AGG 0.380405 2_2:-65969849 None:intergenic
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 2_2:-65968616 None:intergenic
CCTATATTACTAATTATGTA+TGG 0.408840 2_2:-65968137 None:intergenic
ATCATCTGGAAACACTGATC+AGG 0.417420 2_2:+65968984 Msa0265620:five_prime_UTR
AACATTCAACCACAAAGGTT+TGG 0.421468 2_2:-65968773 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 2_2:+65969887 Msa0265620:CDS
CCATACATAATTAGTAATAT+AGG 0.429988 2_2:+65968137 Msa0265620:five_prime_UTR
TACATATGAATATGTTATAC+TGG 0.444536 2_2:+65968694 Msa0265620:five_prime_UTR
GAGACACCAACTAAATCATC+TGG 0.445527 2_2:+65968970 Msa0265620:five_prime_UTR
CTTAATGTACCAAACCTTTG+TGG 0.446577 2_2:+65968764 Msa0265620:five_prime_UTR
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 2_2:+65968622 Msa0265620:five_prime_UTR
TGTATCTTCAGGCATATTAT+GGG 0.464465 2_2:+65968572 Msa0265620:intron
TTCAGGTATGACCACATCAC+TGG 0.473232 2_2:+65969809 Msa0265620:CDS
GAAGATCCAGGCTTAGGCTT+AGG 0.474677 2_2:+65970102 Msa0265620:CDS
AAACTTACAGCAGGTGAAGA+TGG 0.476285 2_2:-65968830 None:intergenic
GTACTTATGAATTATATTCA+AGG 0.477420 2_2:+65968803 Msa0265620:five_prime_UTR
GTGGAGTATTCTTTATCGAT+TGG 0.481011 2_2:-65968313 None:intergenic
AGTACCTGCATCCAAGCTTC+AGG 0.494330 2_2:-65969891 None:intergenic
ACCAGTGTTCCACAGCCTTG+TGG 0.495543 2_2:+65969858 Msa0265620:CDS
GGAAGCGATGGCAACACTAC+AGG 0.500726 2_2:+65969227 Msa0265620:five_prime_UTR
GAAGGTGTAGGTCGTTTCAA+TGG 0.503975 2_2:-65968351 None:intergenic
GTGTTTCCAGATGATTTAGT+TGG 0.505094 2_2:-65968976 None:intergenic
TAAACACATATGAGACTGTT+CGG 0.507208 2_2:+65970243 Msa0265620:three_prime_UTR
CTGCTAGAAGATCCAGGCTT+AGG 0.520262 2_2:+65970096 Msa0265620:CDS
ATGGAAAGAGAATATGGTTG+TGG 0.527159 2_2:-65968332 None:intergenic
GCTAGCGTGGAGAGGAAAAC+CGG 0.540495 2_2:+65969034 Msa0265620:five_prime_UTR
GGCAAAACTCCACAAGGCTG+TGG 0.541143 2_2:-65969867 None:intergenic
TTGCTTCCTAAGCCTAAGCC+TGG 0.544129 2_2:-65970108 None:intergenic
TCATCTGGAAACACTGATCA+GGG 0.547332 2_2:+65968985 Msa0265620:five_prime_UTR
GTGAATCTGCTAGAAGATCC+AGG 0.554001 2_2:+65970090 Msa0265620:CDS
TCCACAAGGCTGTGGAACAC+TGG 0.554932 2_2:-65969859 None:intergenic
GAGCTTATAGATGAGATTGA+AGG 0.560073 2_2:-65968369 None:intergenic
TTGAAAGTGCTGAGCTAGCG+TGG 0.561226 2_2:+65969021 Msa0265620:five_prime_UTR
CCAGTGCTGCAGAAAATGGT+TGG 0.563429 2_2:+65969774 Msa0265620:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 2_2:+65969228 Msa0265620:five_prime_UTR
TATGTACACAGAAATATCAA+TGG 0.574563 2_2:-65968677 None:intergenic
GTGAGCTGAAACGTGAGAGG+AGG 0.579172 2_2:+65970054 Msa0265620:CDS
TTACTTGAACAGATGGAGAA+GGG 0.588445 2_2:+65969678 Msa0265620:intron
ATTACTTGAACAGATGGAGA+AGG 0.590419 2_2:+65969677 Msa0265620:intron
TGACCACATCACTGGAACTG+AGG 0.592621 2_2:+65969817 Msa0265620:CDS
ACAAGGCTGTGGAACACTGG+TGG 0.593279 2_2:-65969856 None:intergenic
ACTTCCAGTAATGGAAGCGA+TGG 0.593651 2_2:+65969215 Msa0265620:five_prime_UTR
GTTCCTCAGTTCCAGTGATG+TGG 0.596954 2_2:-65969820 None:intergenic
GAACAAACCTCAGTGATAGC+CGG 0.601771 2_2:-65969053 None:intergenic
TAAAAGCTACTTCAAAACAA+AGG 0.604078 2_2:-65968442 None:intergenic
GGGCTCCAGACTTCCAGTAA+TGG 0.604188 2_2:+65969206 Msa0265620:five_prime_UTR
ACACTGGTGGAAATAGGCGA+AGG 0.605436 2_2:-65969843 None:intergenic
CTTATGGCCATGCCATACGC+TGG 0.605457 2_2:-65970280 None:intergenic
TATCAACAGTGTGGATACTG+AGG 0.615133 2_2:+65969185 Msa0265620:intron
ATAGATGAGATTGAAGGTGT+AGG 0.618296 2_2:-65968363 None:intergenic
GAGCATATAGAACCAGCGTA+TGG 0.622949 2_2:+65970268 Msa0265620:three_prime_UTR
TATGAACATCACAGATGACC+AGG 0.623111 2_2:-65968640 None:intergenic
AGAGTGAGCTGAAACGTGAG+AGG 0.623183 2_2:+65970051 Msa0265620:CDS
AGTGCTGAGCTAGCGTGGAG+AGG 0.630683 2_2:+65969026 Msa0265620:five_prime_UTR
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 2_2:-65969888 None:intergenic
ATATAAACATTCAACCACAA+AGG 0.654190 2_2:-65968778 None:intergenic
GCTGAGTTGAAATATGGTGG+TGG 0.656136 2_2:-65968610 None:intergenic
TCAGGAGGCAAAACTCCACA+AGG 0.658647 2_2:-65969873 None:intergenic
ATCAACAGTGTGGATACTGA+GGG 0.658895 2_2:+65969186 Msa0265620:intron
TATAGAACCAGCGTATGGCA+TGG 0.659566 2_2:+65970273 Msa0265620:three_prime_UTR
CACTGGTGGAAATAGGCGAA+GGG 0.662789 2_2:-65969842 None:intergenic
GTCATACCTGAAGAAAGTAG+AGG 0.696910 2_2:-65969798 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.711269 2_2:-65968613 None:intergenic
TTGGTCCATGAATGTAGACA+AGG 0.721265 2_2:-65968394 None:intergenic
AGGAAAACCGGCTATCACTG+AGG 0.727206 2_2:+65969046 Msa0265620:five_prime_UTR
AAGCGATGGCAACACTACAG+GGG 0.742066 2_2:+65969229 Msa0265620:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACATTCAATTTTTT+TGG + chr2_2:65969598-65969617 Msa0265620:intron 10.0%
!!! TTAATTACATTCAATTTTTT+TGG + chr2_2:65969598-65969617 Msa0265620:intron 10.0%
!! TTATAAATAAAGTACATAAC+CGG - chr2_2:65969285-65969304 None:intergenic 15.0%
!! TTATAAATAAAGTACATAAC+CGG - chr2_2:65969285-65969304 None:intergenic 15.0%
!! CCTATATTACTAATTATGTA+TGG - chr2_2:65968140-65968159 None:intergenic 20.0%
!! CCATACATAATTAGTAATAT+AGG + chr2_2:65968137-65968156 Msa0265620:five_prime_UTR 20.0%
!! TTAGTAATATAGGATAATTC+AGG + chr2_2:65968147-65968166 Msa0265620:five_prime_UTR 20.0%
!!! AATGTGTTTTCTTACAAAAA+AGG + chr2_2:65968287-65968306 Msa0265620:five_prime_UTR 20.0%
!!! AAGCAAAAGTAGTTTTTAAT+GGG - chr2_2:65968532-65968551 None:intergenic 20.0%
!!! AAAGCAAAAGTAGTTTTTAA+TGG - chr2_2:65968533-65968552 None:intergenic 20.0%
!! TACATATGAATATGTTATAC+TGG + chr2_2:65968694-65968713 Msa0265620:five_prime_UTR 20.0%
!! GTACTTATGAATTATATTCA+AGG + chr2_2:65968803-65968822 Msa0265620:five_prime_UTR 20.0%
!! TATAAATAAAGTACATAACC+GGG - chr2_2:65969284-65969303 None:intergenic 20.0%
!!! ATTTTCATGCTTCAATTTTT+CGG - chr2_2:65969312-65969331 None:intergenic 20.0%
!! ATAAACAATACTAGTTATTC+TGG + chr2_2:65969383-65969402 Msa0265620:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG - chr2_2:65969536-65969555 None:intergenic 20.0%
!!! TCAATTTTTTTGGTTTCATA+AGG + chr2_2:65969608-65969627 Msa0265620:intron 20.0%
!! CCTATATTACTAATTATGTA+TGG - chr2_2:65968140-65968159 None:intergenic 20.0%
!! CCATACATAATTAGTAATAT+AGG + chr2_2:65968137-65968156 Msa0265620:five_prime_UTR 20.0%
!! TTAGTAATATAGGATAATTC+AGG + chr2_2:65968147-65968166 Msa0265620:five_prime_UTR 20.0%
!!! AATGTGTTTTCTTACAAAAA+AGG + chr2_2:65968287-65968306 Msa0265620:five_prime_UTR 20.0%
!!! AAGCAAAAGTAGTTTTTAAT+GGG - chr2_2:65968532-65968551 None:intergenic 20.0%
!!! AAAGCAAAAGTAGTTTTTAA+TGG - chr2_2:65968533-65968552 None:intergenic 20.0%
!! TACATATGAATATGTTATAC+TGG + chr2_2:65968694-65968713 Msa0265620:five_prime_UTR 20.0%
!! GTACTTATGAATTATATTCA+AGG + chr2_2:65968803-65968822 Msa0265620:five_prime_UTR 20.0%
!! TATAAATAAAGTACATAACC+GGG - chr2_2:65969284-65969303 None:intergenic 20.0%
!!! ATTTTCATGCTTCAATTTTT+CGG - chr2_2:65969312-65969331 None:intergenic 20.0%
!! ATAAACAATACTAGTTATTC+TGG + chr2_2:65969383-65969402 Msa0265620:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG - chr2_2:65969536-65969555 None:intergenic 20.0%
!!! TCAATTTTTTTGGTTTCATA+AGG + chr2_2:65969608-65969627 Msa0265620:intron 20.0%
!! TATGTATGGAGTATCTAATT+TGG - chr2_2:65968126-65968145 None:intergenic 25.0%
!!! CATTGTTTTTGATATTGTGT+TGG - chr2_2:65968416-65968435 None:intergenic 25.0%
! TAAAAGCTACTTCAAAACAA+AGG - chr2_2:65968445-65968464 None:intergenic 25.0%
! TATGTACACAGAAATATCAA+TGG - chr2_2:65968680-65968699 None:intergenic 25.0%
! ATATAAACATTCAACCACAA+AGG - chr2_2:65968781-65968800 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG - chr2_2:65968842-65968861 None:intergenic 25.0%
! ATCATAATTTACGGTATTCA+GGG - chr2_2:65968902-65968921 None:intergenic 25.0%
! GTCAAATCCATCATAATTTA+CGG - chr2_2:65968911-65968930 None:intergenic 25.0%
!!! TGGCTATTATAATTTTTTCC+CGG + chr2_2:65969263-65969282 Msa0265620:intron 25.0%
!! TTTTCATGCTTCAATTTTTC+GGG - chr2_2:65969311-65969330 None:intergenic 25.0%
!!! TTATTTGTCACGTGTTTTTA+TGG + chr2_2:65970181-65970200 Msa0265620:three_prime_UTR 25.0%
!!! TATTTGTCACGTGTTTTTAT+GGG + chr2_2:65970182-65970201 Msa0265620:three_prime_UTR 25.0%
!! TATGTATGGAGTATCTAATT+TGG - chr2_2:65968126-65968145 None:intergenic 25.0%
!!! CATTGTTTTTGATATTGTGT+TGG - chr2_2:65968416-65968435 None:intergenic 25.0%
! TAAAAGCTACTTCAAAACAA+AGG - chr2_2:65968445-65968464 None:intergenic 25.0%
! TATGTACACAGAAATATCAA+TGG - chr2_2:65968680-65968699 None:intergenic 25.0%
! ATATAAACATTCAACCACAA+AGG - chr2_2:65968781-65968800 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG - chr2_2:65968842-65968861 None:intergenic 25.0%
! ATCATAATTTACGGTATTCA+GGG - chr2_2:65968902-65968921 None:intergenic 25.0%
! GTCAAATCCATCATAATTTA+CGG - chr2_2:65968911-65968930 None:intergenic 25.0%
!!! TGGCTATTATAATTTTTTCC+CGG + chr2_2:65969263-65969282 Msa0265620:intron 25.0%
!! TTTTCATGCTTCAATTTTTC+GGG - chr2_2:65969311-65969330 None:intergenic 25.0%
!!! TTATTTGTCACGTGTTTTTA+TGG + chr2_2:65970181-65970200 Msa0265620:three_prime_UTR 25.0%
!!! TATTTGTCACGTGTTTTTAT+GGG + chr2_2:65970182-65970201 Msa0265620:three_prime_UTR 25.0%
GTTTCAATGGAAAGAGAATA+TGG - chr2_2:65968341-65968360 None:intergenic 30.0%
ATGTATCTTCAGGCATATTA+TGG + chr2_2:65968571-65968590 Msa0265620:intron 30.0%
TGTATCTTCAGGCATATTAT+GGG + chr2_2:65968572-65968591 Msa0265620:intron 30.0%
TCATAATTTACGGTATTCAG+GGG - chr2_2:65968901-65968920 None:intergenic 30.0%
CATCATAATTTACGGTATTC+AGG - chr2_2:65968903-65968922 None:intergenic 30.0%
CTGAATACCGTAAATTATGA+TGG + chr2_2:65968901-65968920 Msa0265620:intron 30.0%
!! AAATTATGATGGATTTGACC+TGG + chr2_2:65968912-65968931 Msa0265620:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG + chr2_2:65968913-65968932 Msa0265620:intron 30.0%
GATATATCATATCAACAGTG+TGG + chr2_2:65969176-65969195 Msa0265620:intron 30.0%
! CATTGGTCTGTTTATAACAT+TGG - chr2_2:65969340-65969359 None:intergenic 30.0%
CAATGTTATAAACAGACCAA+TGG + chr2_2:65969338-65969357 Msa0265620:intron 30.0%
AGTATTGTTTATCATACCAG+TGG - chr2_2:65969375-65969394 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG + chr2_2:65969402-65969421 Msa0265620:intron 30.0%
CCTTATCATGCATTAACAAT+TGG - chr2_2:65969505-65969524 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG + chr2_2:65969502-65969521 Msa0265620:intron 30.0%
ATGTAATTAACTCTCAAACG+AGG - chr2_2:65969588-65969607 None:intergenic 30.0%
GTACTAATTACTTGAACAGA+TGG + chr2_2:65969671-65969690 Msa0265620:intron 30.0%
TTTAGTGTCAGTAAAAGACA+AGG - chr2_2:65970002-65970021 None:intergenic 30.0%
ACTGACACTAAAGTAATTCT+TGG + chr2_2:65970010-65970029 Msa0265620:intron 30.0%
!! TTTTATGGGTTTGTTTGGAT+TGG + chr2_2:65970196-65970215 Msa0265620:three_prime_UTR 30.0%
TAAACACATATGAGACTGTT+CGG + chr2_2:65970243-65970262 Msa0265620:three_prime_UTR 30.0%
GTTTCAATGGAAAGAGAATA+TGG - chr2_2:65968341-65968360 None:intergenic 30.0%
ATGTATCTTCAGGCATATTA+TGG + chr2_2:65968571-65968590 Msa0265620:intron 30.0%
TGTATCTTCAGGCATATTAT+GGG + chr2_2:65968572-65968591 Msa0265620:intron 30.0%
TCATAATTTACGGTATTCAG+GGG - chr2_2:65968901-65968920 None:intergenic 30.0%
CATCATAATTTACGGTATTC+AGG - chr2_2:65968903-65968922 None:intergenic 30.0%
CTGAATACCGTAAATTATGA+TGG + chr2_2:65968901-65968920 Msa0265620:intron 30.0%
!! AAATTATGATGGATTTGACC+TGG + chr2_2:65968912-65968931 Msa0265620:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG + chr2_2:65968913-65968932 Msa0265620:intron 30.0%
GATATATCATATCAACAGTG+TGG + chr2_2:65969176-65969195 Msa0265620:intron 30.0%
! CATTGGTCTGTTTATAACAT+TGG - chr2_2:65969340-65969359 None:intergenic 30.0%
CAATGTTATAAACAGACCAA+TGG + chr2_2:65969338-65969357 Msa0265620:intron 30.0%
AGTATTGTTTATCATACCAG+TGG - chr2_2:65969375-65969394 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG + chr2_2:65969402-65969421 Msa0265620:intron 30.0%
CCTTATCATGCATTAACAAT+TGG - chr2_2:65969505-65969524 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG + chr2_2:65969502-65969521 Msa0265620:intron 30.0%
ATGTAATTAACTCTCAAACG+AGG - chr2_2:65969588-65969607 None:intergenic 30.0%
GTACTAATTACTTGAACAGA+TGG + chr2_2:65969671-65969690 Msa0265620:intron 30.0%
TTTAGTGTCAGTAAAAGACA+AGG - chr2_2:65970002-65970021 None:intergenic 30.0%
ACTGACACTAAAGTAATTCT+TGG + chr2_2:65970010-65970029 Msa0265620:intron 30.0%
!! TTTTATGGGTTTGTTTGGAT+TGG + chr2_2:65970196-65970215 Msa0265620:three_prime_UTR 30.0%
TAAACACATATGAGACTGTT+CGG + chr2_2:65970243-65970262 Msa0265620:three_prime_UTR 30.0%
! GTGGAGTATTCTTTATCGAT+TGG - chr2_2:65968316-65968335 None:intergenic 35.0%
ATGGAAAGAGAATATGGTTG+TGG - chr2_2:65968335-65968354 None:intergenic 35.0%
! ATAGATGAGATTGAAGGTGT+AGG - chr2_2:65968366-65968385 None:intergenic 35.0%
GAGCTTATAGATGAGATTGA+AGG - chr2_2:65968372-65968391 None:intergenic 35.0%
TGTCTGTTGTATGTATCTTC+AGG + chr2_2:65968561-65968580 Msa0265620:intron 35.0%
CTTAATGTACCAAACCTTTG+TGG + chr2_2:65968764-65968783 Msa0265620:five_prime_UTR 35.0%
AACATTCAACCACAAAGGTT+TGG - chr2_2:65968776-65968795 None:intergenic 35.0%
!! ATTATGATGGATTTGACCTG+GGG + chr2_2:65968914-65968933 Msa0265620:intron 35.0%
GTGTTTCCAGATGATTTAGT+TGG - chr2_2:65968979-65968998 None:intergenic 35.0%
TTTATCATACCAGTGGTTGT+TGG - chr2_2:65969368-65969387 None:intergenic 35.0%
TCAATGAATTGTTGACACCA+CGG - chr2_2:65969456-65969475 None:intergenic 35.0%
GAATCATTTGATACCAAGAC+TGG + chr2_2:65969560-65969579 Msa0265620:intron 35.0%
ATTACTTGAACAGATGGAGA+AGG + chr2_2:65969677-65969696 Msa0265620:intron 35.0%
TTACTTGAACAGATGGAGAA+GGG + chr2_2:65969678-65969697 Msa0265620:intron 35.0%
!! CGTGTTTTTATGGGTTTGTT+TGG + chr2_2:65970191-65970210 Msa0265620:three_prime_UTR 35.0%
! GTGGAGTATTCTTTATCGAT+TGG - chr2_2:65968316-65968335 None:intergenic 35.0%
ATGGAAAGAGAATATGGTTG+TGG - chr2_2:65968335-65968354 None:intergenic 35.0%
! ATAGATGAGATTGAAGGTGT+AGG - chr2_2:65968366-65968385 None:intergenic 35.0%
GAGCTTATAGATGAGATTGA+AGG - chr2_2:65968372-65968391 None:intergenic 35.0%
TGTCTGTTGTATGTATCTTC+AGG + chr2_2:65968561-65968580 Msa0265620:intron 35.0%
CTTAATGTACCAAACCTTTG+TGG + chr2_2:65968764-65968783 Msa0265620:five_prime_UTR 35.0%
AACATTCAACCACAAAGGTT+TGG - chr2_2:65968776-65968795 None:intergenic 35.0%
!! ATTATGATGGATTTGACCTG+GGG + chr2_2:65968914-65968933 Msa0265620:intron 35.0%
GTGTTTCCAGATGATTTAGT+TGG - chr2_2:65968979-65968998 None:intergenic 35.0%
TTTATCATACCAGTGGTTGT+TGG - chr2_2:65969368-65969387 None:intergenic 35.0%
TCAATGAATTGTTGACACCA+CGG - chr2_2:65969456-65969475 None:intergenic 35.0%
GAATCATTTGATACCAAGAC+TGG + chr2_2:65969560-65969579 Msa0265620:intron 35.0%
ATTACTTGAACAGATGGAGA+AGG + chr2_2:65969677-65969696 Msa0265620:intron 35.0%
TTACTTGAACAGATGGAGAA+GGG + chr2_2:65969678-65969697 Msa0265620:intron 35.0%
!! CGTGTTTTTATGGGTTTGTT+TGG + chr2_2:65970191-65970210 Msa0265620:three_prime_UTR 35.0%
CTCATCCTTGTCTACATTCA+TGG + chr2_2:65968389-65968408 Msa0265620:five_prime_UTR 40.0%
TTGGTCCATGAATGTAGACA+AGG - chr2_2:65968397-65968416 None:intergenic 40.0%
!!! CCAAGCTTTTTTACGTACAG+AGG - chr2_2:65968469-65968488 None:intergenic 40.0%
CCTCTGTACGTAAAAAAGCT+TGG + chr2_2:65968466-65968485 Msa0265620:intron 40.0%
CGTAAAAAAGCTTGGCCAAT+CGG + chr2_2:65968474-65968493 Msa0265620:intron 40.0%
TATGAACATCACAGATGACC+AGG - chr2_2:65968643-65968662 None:intergenic 40.0%
AAACTTACAGCAGGTGAAGA+TGG - chr2_2:65968833-65968852 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG + chr2_2:65968915-65968934 Msa0265620:intron 40.0%
GAGACACCAACTAAATCATC+TGG + chr2_2:65968970-65968989 Msa0265620:five_prime_UTR 40.0%
ATCATCTGGAAACACTGATC+AGG + chr2_2:65968984-65969003 Msa0265620:five_prime_UTR 40.0%
TCATCTGGAAACACTGATCA+GGG + chr2_2:65968985-65969004 Msa0265620:five_prime_UTR 40.0%
! ATAGGAAGTGCAGTTGATTC+TGG - chr2_2:65969092-65969111 None:intergenic 40.0%
!! TACGAGTTTGTTGCTCTGTT+AGG + chr2_2:65969123-65969142 Msa0265620:intron 40.0%
TATCAACAGTGTGGATACTG+AGG + chr2_2:65969185-65969204 Msa0265620:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG + chr2_2:65969186-65969205 Msa0265620:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG - chr2_2:65969750-65969769 None:intergenic 40.0%
GTCATACCTGAAGAAAGTAG+AGG - chr2_2:65969801-65969820 None:intergenic 40.0%
TTCAGCTCACTCTCATTCTA+AGG - chr2_2:65970044-65970063 None:intergenic 40.0%
! GTATCTAATTTGGAGCTGAC+TGG - chr2_2:65968116-65968135 None:intergenic 40.0%
CTCATCCTTGTCTACATTCA+TGG + chr2_2:65968389-65968408 Msa0265620:five_prime_UTR 40.0%
TTGGTCCATGAATGTAGACA+AGG - chr2_2:65968397-65968416 None:intergenic 40.0%
!!! CCAAGCTTTTTTACGTACAG+AGG - chr2_2:65968469-65968488 None:intergenic 40.0%
CCTCTGTACGTAAAAAAGCT+TGG + chr2_2:65968466-65968485 Msa0265620:intron 40.0%
CGTAAAAAAGCTTGGCCAAT+CGG + chr2_2:65968474-65968493 Msa0265620:intron 40.0%
TATGAACATCACAGATGACC+AGG - chr2_2:65968643-65968662 None:intergenic 40.0%
AAACTTACAGCAGGTGAAGA+TGG - chr2_2:65968833-65968852 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG + chr2_2:65968915-65968934 Msa0265620:intron 40.0%
GAGACACCAACTAAATCATC+TGG + chr2_2:65968970-65968989 Msa0265620:five_prime_UTR 40.0%
ATCATCTGGAAACACTGATC+AGG + chr2_2:65968984-65969003 Msa0265620:five_prime_UTR 40.0%
TCATCTGGAAACACTGATCA+GGG + chr2_2:65968985-65969004 Msa0265620:five_prime_UTR 40.0%
! ATAGGAAGTGCAGTTGATTC+TGG - chr2_2:65969092-65969111 None:intergenic 40.0%
!! TACGAGTTTGTTGCTCTGTT+AGG + chr2_2:65969123-65969142 Msa0265620:intron 40.0%
TATCAACAGTGTGGATACTG+AGG + chr2_2:65969185-65969204 Msa0265620:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG + chr2_2:65969186-65969205 Msa0265620:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG - chr2_2:65969750-65969769 None:intergenic 40.0%
GTCATACCTGAAGAAAGTAG+AGG - chr2_2:65969801-65969820 None:intergenic 40.0%
TTCAGCTCACTCTCATTCTA+AGG - chr2_2:65970044-65970063 None:intergenic 40.0%
! GAAGGTGTAGGTCGTTTCAA+TGG - chr2_2:65968354-65968373 None:intergenic 45.0%
GAAAGCAATCTGTGACCGAT+TGG - chr2_2:65968492-65968511 None:intergenic 45.0%
! GCTGAGTTGAAATATGGTGG+TGG - chr2_2:65968613-65968632 None:intergenic 45.0%
! GCAGCTGAGTTGAAATATGG+TGG - chr2_2:65968616-65968635 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG - chr2_2:65968619-65968638 None:intergenic 45.0%
CAGGGGATGATGTAAAGCTT+CGG - chr2_2:65968884-65968903 None:intergenic 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG - chr2_2:65968961-65968980 None:intergenic 45.0%
GAACAAACCTCAGTGATAGC+CGG - chr2_2:65969056-65969075 None:intergenic 45.0%
ACTCGTAGAGCAAGGAAGAT+AGG - chr2_2:65969110-65969129 None:intergenic 45.0%
AGCAACAAACTCGTAGAGCA+AGG - chr2_2:65969118-65969137 None:intergenic 45.0%
! ACTTCCAGTAATGGAAGCGA+TGG + chr2_2:65969215-65969234 Msa0265620:five_prime_UTR 45.0%
CTACAGGGGTGAGAAATTTC+TGG + chr2_2:65969243-65969262 Msa0265620:intron 45.0%
! AGTGGTTGTTGGTGTTCCAT+TGG - chr2_2:65969357-65969376 None:intergenic 45.0%
AATGGAACACCAACAACCAC+TGG + chr2_2:65969356-65969375 Msa0265620:intron 45.0%
GTCATGAATGACTGTAACCG+TGG + chr2_2:65969436-65969455 Msa0265620:intron 45.0%
!! TGACACCGTCTTTTTGGAAG+CGG - chr2_2:65969744-65969763 None:intergenic 45.0%
GTTGGACCTCTACTTTCTTC+AGG + chr2_2:65969792-65969811 Msa0265620:CDS 45.0%
TTCAGGTATGACCACATCAC+TGG + chr2_2:65969809-65969828 Msa0265620:CDS 45.0%
TGTGGAACACTGGTGGAAAT+AGG - chr2_2:65969852-65969871 None:intergenic 45.0%
GTGAATCTGCTAGAAGATCC+AGG + chr2_2:65970090-65970109 Msa0265620:CDS 45.0%
GAGCATATAGAACCAGCGTA+TGG + chr2_2:65970268-65970287 Msa0265620:three_prime_UTR 45.0%
TATAGAACCAGCGTATGGCA+TGG + chr2_2:65970273-65970292 Msa0265620:three_prime_UTR 45.0%
! GAAGGTGTAGGTCGTTTCAA+TGG - chr2_2:65968354-65968373 None:intergenic 45.0%
GAAAGCAATCTGTGACCGAT+TGG - chr2_2:65968492-65968511 None:intergenic 45.0%
! GCTGAGTTGAAATATGGTGG+TGG - chr2_2:65968613-65968632 None:intergenic 45.0%
! GCAGCTGAGTTGAAATATGG+TGG - chr2_2:65968616-65968635 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG - chr2_2:65968619-65968638 None:intergenic 45.0%
CAGGGGATGATGTAAAGCTT+CGG - chr2_2:65968884-65968903 None:intergenic 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG - chr2_2:65968961-65968980 None:intergenic 45.0%
GAACAAACCTCAGTGATAGC+CGG - chr2_2:65969056-65969075 None:intergenic 45.0%
ACTCGTAGAGCAAGGAAGAT+AGG - chr2_2:65969110-65969129 None:intergenic 45.0%
AGCAACAAACTCGTAGAGCA+AGG - chr2_2:65969118-65969137 None:intergenic 45.0%
! ACTTCCAGTAATGGAAGCGA+TGG + chr2_2:65969215-65969234 Msa0265620:five_prime_UTR 45.0%
CTACAGGGGTGAGAAATTTC+TGG + chr2_2:65969243-65969262 Msa0265620:intron 45.0%
! AGTGGTTGTTGGTGTTCCAT+TGG - chr2_2:65969357-65969376 None:intergenic 45.0%
AATGGAACACCAACAACCAC+TGG + chr2_2:65969356-65969375 Msa0265620:intron 45.0%
GTCATGAATGACTGTAACCG+TGG + chr2_2:65969436-65969455 Msa0265620:intron 45.0%
!! TGACACCGTCTTTTTGGAAG+CGG - chr2_2:65969744-65969763 None:intergenic 45.0%
GTTGGACCTCTACTTTCTTC+AGG + chr2_2:65969792-65969811 Msa0265620:CDS 45.0%
TTCAGGTATGACCACATCAC+TGG + chr2_2:65969809-65969828 Msa0265620:CDS 45.0%
TGTGGAACACTGGTGGAAAT+AGG - chr2_2:65969852-65969871 None:intergenic 45.0%
GTGAATCTGCTAGAAGATCC+AGG + chr2_2:65970090-65970109 Msa0265620:CDS 45.0%
GAGCATATAGAACCAGCGTA+TGG + chr2_2:65970268-65970287 Msa0265620:three_prime_UTR 45.0%
TATAGAACCAGCGTATGGCA+TGG + chr2_2:65970273-65970292 Msa0265620:three_prime_UTR 45.0%
!! TTGAAAGTGCTGAGCTAGCG+TGG + chr2_2:65969021-65969040 Msa0265620:five_prime_UTR 50.0%
AGGAAAACCGGCTATCACTG+AGG + chr2_2:65969046-65969065 Msa0265620:five_prime_UTR 50.0%
GTTGCTCTGTTAGGTTCGTG+TGG + chr2_2:65969132-65969151 Msa0265620:intron 50.0%
CGCTTCCATTACTGGAAGTC+TGG - chr2_2:65969214-65969233 None:intergenic 50.0%
GTTGCCATCGCTTCCATTAC+TGG - chr2_2:65969222-65969241 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG + chr2_2:65969228-65969247 Msa0265620:five_prime_UTR 50.0%
AAGCGATGGCAACACTACAG+GGG + chr2_2:65969229-65969248 Msa0265620:five_prime_UTR 50.0%
TTTGGAAGCGGCAGTCTCTT+TGG - chr2_2:65969732-65969751 None:intergenic 50.0%
! GACTGCCGCTTCCAAAAAGA+CGG + chr2_2:65969736-65969755 Msa0265620:CDS 50.0%
GCAACCAGTGCTGCAGAAAA+TGG + chr2_2:65969770-65969789 Msa0265620:CDS 50.0%
! CCAACCATTTTCTGCAGCAC+TGG - chr2_2:65969777-65969796 None:intergenic 50.0%
CCAGTGCTGCAGAAAATGGT+TGG + chr2_2:65969774-65969793 Msa0265620:CDS 50.0%
TGACCACATCACTGGAACTG+AGG + chr2_2:65969817-65969836 Msa0265620:CDS 50.0%
GTTCCTCAGTTCCAGTGATG+TGG - chr2_2:65969823-65969842 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG - chr2_2:65969845-65969864 None:intergenic 50.0%
ACACTGGTGGAAATAGGCGA+AGG - chr2_2:65969846-65969865 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG - chr2_2:65969876-65969895 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG + chr2_2:65969880-65969899 Msa0265620:CDS 50.0%
AGTACCTGCATCCAAGCTTC+AGG - chr2_2:65969894-65969913 None:intergenic 50.0%
AGAGTGAGCTGAAACGTGAG+AGG + chr2_2:65970051-65970070 Msa0265620:CDS 50.0%
CTGCTAGAAGATCCAGGCTT+AGG + chr2_2:65970096-65970115 Msa0265620:CDS 50.0%
GAAGATCCAGGCTTAGGCTT+AGG + chr2_2:65970102-65970121 Msa0265620:CDS 50.0%
TTGCTTCCTAAGCCTAAGCC+TGG - chr2_2:65970111-65970130 None:intergenic 50.0%
!! TTGAAAGTGCTGAGCTAGCG+TGG + chr2_2:65969021-65969040 Msa0265620:five_prime_UTR 50.0%
AGGAAAACCGGCTATCACTG+AGG + chr2_2:65969046-65969065 Msa0265620:five_prime_UTR 50.0%
GTTGCTCTGTTAGGTTCGTG+TGG + chr2_2:65969132-65969151 Msa0265620:intron 50.0%
CGCTTCCATTACTGGAAGTC+TGG - chr2_2:65969214-65969233 None:intergenic 50.0%
GTTGCCATCGCTTCCATTAC+TGG - chr2_2:65969222-65969241 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG + chr2_2:65969228-65969247 Msa0265620:five_prime_UTR 50.0%
AAGCGATGGCAACACTACAG+GGG + chr2_2:65969229-65969248 Msa0265620:five_prime_UTR 50.0%
TTTGGAAGCGGCAGTCTCTT+TGG - chr2_2:65969732-65969751 None:intergenic 50.0%
! GACTGCCGCTTCCAAAAAGA+CGG + chr2_2:65969736-65969755 Msa0265620:CDS 50.0%
GCAACCAGTGCTGCAGAAAA+TGG + chr2_2:65969770-65969789 Msa0265620:CDS 50.0%
! CCAACCATTTTCTGCAGCAC+TGG - chr2_2:65969777-65969796 None:intergenic 50.0%
CCAGTGCTGCAGAAAATGGT+TGG + chr2_2:65969774-65969793 Msa0265620:CDS 50.0%
TGACCACATCACTGGAACTG+AGG + chr2_2:65969817-65969836 Msa0265620:CDS 50.0%
GTTCCTCAGTTCCAGTGATG+TGG - chr2_2:65969823-65969842 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG - chr2_2:65969845-65969864 None:intergenic 50.0%
ACACTGGTGGAAATAGGCGA+AGG - chr2_2:65969846-65969865 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG - chr2_2:65969876-65969895 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG + chr2_2:65969880-65969899 Msa0265620:CDS 50.0%
AGTACCTGCATCCAAGCTTC+AGG - chr2_2:65969894-65969913 None:intergenic 50.0%
AGAGTGAGCTGAAACGTGAG+AGG + chr2_2:65970051-65970070 Msa0265620:CDS 50.0%
CTGCTAGAAGATCCAGGCTT+AGG + chr2_2:65970096-65970115 Msa0265620:CDS 50.0%
GAAGATCCAGGCTTAGGCTT+AGG + chr2_2:65970102-65970121 Msa0265620:CDS 50.0%
TTGCTTCCTAAGCCTAAGCC+TGG - chr2_2:65970111-65970130 None:intergenic 50.0%
TTCAACTCAGCTGCTGCTCC+TGG + chr2_2:65968622-65968641 Msa0265620:five_prime_UTR 55.0%
GCTAGCGTGGAGAGGAAAAC+CGG + chr2_2:65969034-65969053 Msa0265620:five_prime_UTR 55.0%
GGGCTCCAGACTTCCAGTAA+TGG + chr2_2:65969206-65969225 Msa0265620:five_prime_UTR 55.0%
GGAAGCGATGGCAACACTAC+AGG + chr2_2:65969227-65969246 Msa0265620:five_prime_UTR 55.0%
! CTCAAACGAGGTGCCAGTCT+TGG - chr2_2:65969576-65969595 None:intergenic 55.0%
ACAAGGCTGTGGAACACTGG+TGG - chr2_2:65969859-65969878 None:intergenic 55.0%
ACCAGTGTTCCACAGCCTTG+TGG + chr2_2:65969858-65969877 Msa0265620:CDS 55.0%
TCCACAAGGCTGTGGAACAC+TGG - chr2_2:65969862-65969881 None:intergenic 55.0%
GGCAAAACTCCACAAGGCTG+TGG - chr2_2:65969870-65969889 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG - chr2_2:65969891-65969910 None:intergenic 55.0%
GTGAGCTGAAACGTGAGAGG+AGG + chr2_2:65970054-65970073 Msa0265620:CDS 55.0%
TTCAACTCAGCTGCTGCTCC+TGG + chr2_2:65968622-65968641 Msa0265620:five_prime_UTR 55.0%
GCTAGCGTGGAGAGGAAAAC+CGG + chr2_2:65969034-65969053 Msa0265620:five_prime_UTR 55.0%
GGGCTCCAGACTTCCAGTAA+TGG + chr2_2:65969206-65969225 Msa0265620:five_prime_UTR 55.0%
GGAAGCGATGGCAACACTAC+AGG + chr2_2:65969227-65969246 Msa0265620:five_prime_UTR 55.0%
! CTCAAACGAGGTGCCAGTCT+TGG - chr2_2:65969576-65969595 None:intergenic 55.0%
ACAAGGCTGTGGAACACTGG+TGG - chr2_2:65969859-65969878 None:intergenic 55.0%
ACCAGTGTTCCACAGCCTTG+TGG + chr2_2:65969858-65969877 Msa0265620:CDS 55.0%
TCCACAAGGCTGTGGAACAC+TGG - chr2_2:65969862-65969881 None:intergenic 55.0%
GGCAAAACTCCACAAGGCTG+TGG - chr2_2:65969870-65969889 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG - chr2_2:65969891-65969910 None:intergenic 55.0%
GTGAGCTGAAACGTGAGAGG+AGG + chr2_2:65970054-65970073 Msa0265620:CDS 55.0%
TGACCTGGGGGAAACTACGC+AGG + chr2_2:65968927-65968946 Msa0265620:intron 60.0%
! AGTGCTGAGCTAGCGTGGAG+AGG + chr2_2:65969026-65969045 Msa0265620:five_prime_UTR 60.0%
GCCTCCTGAAGCTTGGATGC+AGG + chr2_2:65969887-65969906 Msa0265620:CDS 60.0%
TGACCTGGGGGAAACTACGC+AGG + chr2_2:65968927-65968946 Msa0265620:intron 60.0%
! AGTGCTGAGCTAGCGTGGAG+AGG + chr2_2:65969026-65969045 Msa0265620:five_prime_UTR 60.0%
GCCTCCTGAAGCTTGGATGC+AGG + chr2_2:65969887-65969906 Msa0265620:CDS 60.0%
CAGCCTGCGTAGTTTCCCCC+AGG - chr2_2:65968933-65968952 None:intergenic 65.0%
CTGGGGGAAACTACGCAGGC+TGG + chr2_2:65968931-65968950 Msa0265620:intron 65.0%
CAGCCTGCGTAGTTTCCCCC+AGG - chr2_2:65968933-65968952 None:intergenic 65.0%
CTGGGGGAAACTACGCAGGC+TGG + chr2_2:65968931-65968950 Msa0265620:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65968116 65970298 65968116 ID=Msa0265620;Name=Msa0265620
chr2_2 mRNA 65968116 65970298 65968116 ID=Msa0265620-mRNA-1;Parent=Msa0265620;Name=Msa0265620-mRNA-1;_AED=0.28;_eAED=0.28;_QI=793|1|1|1|0.2|0.33|6|162|102
chr2_2 exon 65968116 65968470 65968116 ID=Msa0265620-mRNA-1:exon:20804;Parent=Msa0265620-mRNA-1
chr2_2 exon 65968583 65968844 65968583 ID=Msa0265620-mRNA-1:exon:20805;Parent=Msa0265620-mRNA-1
chr2_2 exon 65968949 65969067 65968949 ID=Msa0265620-mRNA-1:exon:20806;Parent=Msa0265620-mRNA-1
chr2_2 exon 65969194 65969250 65969194 ID=Msa0265620-mRNA-1:exon:20807;Parent=Msa0265620-mRNA-1
chr2_2 exon 65969690 65969908 65969690 ID=Msa0265620-mRNA-1:exon:20808;Parent=Msa0265620-mRNA-1
chr2_2 exon 65970047 65970298 65970047 ID=Msa0265620-mRNA-1:exon:20809;Parent=Msa0265620-mRNA-1
chr2_2 five_prime_UTR 65968116 65968470 65968116 ID=Msa0265620-mRNA-1:five_prime_utr;Parent=Msa0265620-mRNA-1
chr2_2 five_prime_UTR 65968583 65968844 65968583 ID=Msa0265620-mRNA-1:five_prime_utr;Parent=Msa0265620-mRNA-1
chr2_2 five_prime_UTR 65968949 65969067 65968949 ID=Msa0265620-mRNA-1:five_prime_utr;Parent=Msa0265620-mRNA-1
chr2_2 five_prime_UTR 65969194 65969250 65969194 ID=Msa0265620-mRNA-1:five_prime_utr;Parent=Msa0265620-mRNA-1
chr2_2 CDS 65969690 65969908 65969690 ID=Msa0265620-mRNA-1:cds;Parent=Msa0265620-mRNA-1
chr2_2 CDS 65970047 65970136 65970047 ID=Msa0265620-mRNA-1:cds;Parent=Msa0265620-mRNA-1
chr2_2 three_prime_UTR 65970137 65970298 65970137 ID=Msa0265620-mRNA-1:three_prime_utr;Parent=Msa0265620-mRNA-1
Gene Sequence

>Msa0265620

ATGGAGAAGGGAAAACTGAGATGCAAGATAATCAAGTTTCCAAAGAGACTGCCGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAATGGTTGGACCTCTACTTTCTTCAGGTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGTTCCACAGCCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGAGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGCTTAGGAAGCAAGTATGA

Protein sequence

>Msa0265620

MEKGKLRCKIIKFPKRLPLPKRRCQLSQPVLQKMVGPLLSSGMTTSLELRNPSPISTSVPQPCGVLPPEAWMQNESELKRERRKQSNRESARRSRLRLRKQV*