AlfalfaGEDB | Msa0310060

M. sativa cultivar zhongmu-4 / Msa0310060

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748
PFAM: PF00141.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310060	AFK45389.1	92.508	307	12	1	17	312	17	323	0.0	583

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310060	sp\|Q9SZH2\|PER43_ARATH	62.579	318	104	3	7	312	12	326	2.81e-138	397

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310060	I3SYP7	92.508	307	12	1	17	312	17	323	0.0	583

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0189680	Msa0310060	0.892026	2.317955e-74	-8.615850e-47
Msa0231990	Msa0310060	0.888180	7.419271e-73	-8.615850e-47
Msa0232060	Msa0310060	0.888014	8.595102e-73	-8.615850e-47
Msa0310060	Msa0881280	0.869091	4.013214e-66	-8.615850e-47
Msa0310060	Msa1343280	0.891349	4.309660e-74	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310060	MtrunA17_Chr2g0278671	92.834	307	11	1	17	312	17	323	0.0	582
Msa0310060	MtrunA17_Chr4g0063671	48.276	319	148	5	6	312	7	320	6.20e-95	283
Msa0310060	MtrunA17_Chr2g0279041	47.975	321	150	6	5	312	9	325	6.27e-94	281
Msa0310060	MtrunA17_Chr4g0070951	39.634	328	171	7	3	312	11	329	4.12e-71	223
Msa0310060	MtrunA17_Chr2g0279061	46.693	257	123	4	68	312	12	266	9.61e-71	220
Msa0310060	MtrunA17_Chr5g0402571	39.571	326	171	8	4	312	10	326	1.48e-70	221
Msa0310060	MtrunA17_Chr2g0322861	39.564	321	169	7	10	312	73	386	3.34e-70	223
Msa0310060	MtrunA17_Chr4g0043391	41.692	331	164	11	1	312	4	324	8.55e-70	219
Msa0310060	MtrunA17_Chr5g0402581	38.769	325	175	7	4	312	10	326	2.48e-69	218
Msa0310060	MtrunA17_Chr4g0038171	41.088	331	166	11	1	312	1	321	3.19e-69	218

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310060	AT4G25980.1	62.579	318	104	3	7	312	12	326	2.85e-139	397
Msa0310060	AT1G77100.1	52.960	321	131	5	5	312	6	319	7.14e-105	309
Msa0310060	AT2G41480.1	46.462	325	160	4	1	312	5	328	2.55e-95	285
Msa0310060	AT5G64120.1	45.246	305	150	4	19	312	30	328	2.12e-86	263
Msa0310060	AT5G39580.1	42.679	321	164	4	4	312	7	319	5.21e-83	253
Msa0310060	AT5G64100.1	42.943	333	160	8	4	312	5	331	1.73e-77	240
Msa0310060	AT5G17820.1	43.574	319	156	8	6	312	7	313	1.90e-77	239
Msa0310060	AT5G17820.2	43.574	319	156	8	6	312	60	366	1.14e-76	239
Msa0310060	AT1G05260.1	41.486	323	170	7	5	312	7	325	5.81e-75	233
Msa0310060	AT5G64110.1	41.975	324	162	7	9	312	13	330	1.95e-74	232

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Find 59 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTTAGCCATGGATGA+AGG	0.499351	2_4:+4926836	Msa0310060:CDS
AAAGCAAGGTGCCCTAAGGA+TGG	0.570656	2_4:+4926803	Msa0310060:CDS
AACAGGGAGAAGAGATGGAT+TGG	0.483056	2_4:+4925177	Msa0310060:CDS
AACGTTTAGCCATGGATGAA+GGG	0.576082	2_4:+4926837	Msa0310060:CDS
AAGACTGCATCTCCACATGC+AGG	0.590000	2_4:+4924851	Msa0310060:CDS
AAGGCCAAGTTTCTGAACAA+GGG	0.675709	2_4:+4925259	Msa0310060:CDS
AATCCATCTCTTCTCCCTGT+TGG	0.503118	2_4:-4925175	None:intergenic
AATCCTATAAATCCAACATT+TGG	0.339432	2_4:+4926980	Msa0310060:CDS
AATTCAGCTGCACATACAAT+TGG	0.414747	2_4:+4926686	Msa0310060:intron
ACCTTGCTTTCAGTTCTGGG+AGG	0.637941	2_4:-4926790	None:intergenic

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTGAATCATCAACATC+CGG	-	chr2_4:4925232-4925251	None:intergenic	30.0%
ATTTGGGAAATTGATAGAGA+AGG	+	chr2_4:4925661-4925680	Msa0310060:intron	30.0%
TTTGGGAAATTGATAGAGAA+GGG	+	chr2_4:4925662-4925681	Msa0310060:intron	30.0%
CATCACATTCTTATTACTAG+AGG	+	chr2_4:4926011-4926030	Msa0310060:intron	30.0%
TGGTTGTAAATCCAGAAAAA+AGG	-	chr2_4:4926041-4926060	None:intergenic	30.0%
CTCTTCACAAAAATACTTGT+AGG	-	chr2_4:4926303-4926322	None:intergenic	30.0%
TGTTCAGTCAATGGTAAAAA+TGG	+	chr2_4:4927024-4927043	Msa0310060:CDS	30.0%
GTTCAGTCAATGGTAAAAAT+GGG	+	chr2_4:4927025-4927044	Msa0310060:CDS	30.0%
ATGGTAAAAATGGGACAAAT+TGG	+	chr2_4:4927034-4927053	Msa0310060:CDS	30.0%
GAAAAGATTTGTGACCAATG+TGG	-	chr2_4:4925043-4925062	None:intergenic	35.0%

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	4924517	4927111	4924517	ID=Msa0310060;Name=Msa0310060
chr2_4	mRNA	4924517	4927111	4924517	ID=Msa0310060-mRNA-1;Parent=Msa0310060;Name=Msa0310060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|1\|1\|1\|4\|0\|312
chr2_4	exon	4924517	4924723	4924517	ID=Msa0310060-mRNA-1:exon:1670;Parent=Msa0310060-mRNA-1
chr2_4	exon	4924806	4924988	4924806	ID=Msa0310060-mRNA-1:exon:1671;Parent=Msa0310060-mRNA-1
chr2_4	exon	4925151	4925280	4925151	ID=Msa0310060-mRNA-1:exon:1672;Parent=Msa0310060-mRNA-1
chr2_4	exon	4926693	4927111	4926693	ID=Msa0310060-mRNA-1:exon:1673;Parent=Msa0310060-mRNA-1
chr2_4	CDS	4924517	4924723	4924517	ID=Msa0310060-mRNA-1:cds;Parent=Msa0310060-mRNA-1
chr2_4	CDS	4924806	4924988	4924806	ID=Msa0310060-mRNA-1:cds;Parent=Msa0310060-mRNA-1
chr2_4	CDS	4925151	4925280	4925151	ID=Msa0310060-mRNA-1:cds;Parent=Msa0310060-mRNA-1
chr2_4	CDS	4926693	4927111	4926693	ID=Msa0310060-mRNA-1:cds;Parent=Msa0310060-mRNA-1

Gene Sequence

>Msa0310060

ATGGCTTACTTTGTTTTTTTGTCTCTCTTATTCTTATTCTTAATCTTAATTGATGGTTCTAAGAGTCAGCTTCATGTTGGTTTCTACTCCAACACATGTCCTCAAGTAGAGTCCACTGTCCATGATGTTGTTAGAGAAGCTGTTCTTTTTGACAGAACCATGGCTGCTGTTCTTCTCAGGCTTCATTTTCATGACTGCTTTGTTGAGGGATGTGATGGTTCAATACTGATTAATACTACTCAAAATCCAGAGAAGACTGCATCTCCACATGCAGGTGTTAGAGGATATGATGTGATAGAAAGAGCCAAGGCACAATTGGAAGCATCTTGTCCAGGAGTGGTTTCTTGTGCAGATATTGTTGCTTTGGCAGCAAGAGATGCAATTGTCATGGCGAATGGACCTGCATATCAAGTTCCAACAGGGAGAAGAGATGGATTGGTTTCAGATAAATCTCTTGCAGATAATATGCCGGATGTTGATGATTCAATTCAGCAACTCAAGGCCAAGTTTCTGAACAAGGCTGCACATACAATTGGAACCACAGCATGCTTCTTTATGAGAAAAAGACTATACGAATTTTTCCCATTTGGATCAGACCCAACTATTAACCTGAATTTCCTCCCAGAACTGAAAGCAAGGTGCCCTAAGGATGGAGATATCAACAAACGTTTAGCCATGGATGAAGGGAGTGATCTGAAATTTGACAAGAGTATATTGAAAAACATAAGGGAAGGTTTTGCTGTGTTAGCTTCTGATGCAAGACTTAATGATGACTTTGTAACAAAGAGTGTCATTGATTCCTACTTTAATCCTATAAATCCAACATTTGGACCTTCTTTTGAAAATGATTTTGTTCAGTCAATGGTAAAAATGGGACAAATTGGAGTAAAGACAGGTTCTGTTGGAAACATTAGGCGTGTGTGCTCAGCTTTTAATTGA

Protein sequence

>Msa0310060

MAYFVFLSLLFLFLILIDGSKSQLHVGFYSNTCPQVESTVHDVVREAVLFDRTMAAVLLRLHFHDCFVEGCDGSILINTTQNPEKTASPHAGVRGYDVIERAKAQLEASCPGVVSCADIVALAARDAIVMANGPAYQVPTGRRDGLVSDKSLADNMPDVDDSIQQLKAKFLNKAAHTIGTTACFFMRKRLYEFFPFGSDPTINLNFLPELKARCPKDGDINKRLAMDEGSDLKFDKSILKNIREGFAVLASDARLNDDFVTKSVIDSYFNPINPTFGPSFENDFVQSMVKMGQIGVKTGSVGNIRRVCSAFN*