Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881280 | AFK45389.1 | 91.857 | 307 | 14 | 1 | 17 | 312 | 17 | 323 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881280 | sp|Q9SZH2|PER43_ARATH | 62.893 | 318 | 103 | 3 | 7 | 312 | 12 | 326 | 1.31e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881280 | I3SYP7 | 91.857 | 307 | 14 | 1 | 17 | 312 | 17 | 323 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189680 | Msa0881280 | 0.942691 | 4.586335e-102 | -8.615850e-47 |
| Msa0210610 | Msa0881280 | 0.809167 | 2.163087e-50 | -8.615850e-47 |
| Msa0231990 | Msa0881280 | 0.942616 | 5.241473e-102 | -8.615850e-47 |
| Msa0232060 | Msa0881280 | 0.938606 | 5.091385e-99 | -8.615850e-47 |
| Msa0310060 | Msa0881280 | 0.869091 | 4.013214e-66 | -8.615850e-47 |
| Msa0333770 | Msa0881280 | 0.806707 | 7.216493e-50 | -8.615850e-47 |
| Msa0881280 | Msa0885540 | 0.803276 | 3.766622e-49 | -8.615850e-47 |
| Msa0881280 | Msa1187480 | 0.800227 | 1.590778e-48 | -8.615850e-47 |
| Msa0881280 | Msa1323070 | 0.800037 | 1.739154e-48 | -8.615850e-47 |
| Msa0881280 | Msa1343280 | 0.944604 | 1.437565e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881280 | MtrunA17_Chr2g0278671 | 92.182 | 307 | 13 | 1 | 17 | 312 | 17 | 323 | 0.0 | 578 |
| Msa0881280 | MtrunA17_Chr4g0063671 | 48.276 | 319 | 148 | 5 | 6 | 312 | 7 | 320 | 2.02e-95 | 285 |
| Msa0881280 | MtrunA17_Chr2g0279041 | 48.287 | 321 | 149 | 6 | 5 | 312 | 9 | 325 | 3.59e-95 | 284 |
| Msa0881280 | MtrunA17_Chr4g0070951 | 39.634 | 328 | 171 | 7 | 3 | 312 | 11 | 329 | 8.07e-72 | 225 |
| Msa0881280 | MtrunA17_Chr5g0402571 | 39.385 | 325 | 173 | 7 | 4 | 312 | 10 | 326 | 1.37e-71 | 224 |
| Msa0881280 | MtrunA17_Chr2g0279061 | 46.693 | 257 | 123 | 4 | 68 | 312 | 12 | 266 | 6.23e-71 | 220 |
| Msa0881280 | MtrunA17_Chr4g0043391 | 41.994 | 331 | 163 | 11 | 1 | 312 | 4 | 324 | 1.71e-70 | 221 |
| Msa0881280 | MtrunA17_Chr5g0402581 | 39.077 | 325 | 174 | 7 | 4 | 312 | 10 | 326 | 1.85e-70 | 221 |
| Msa0881280 | MtrunA17_Chr1g0175561 | 39.385 | 325 | 171 | 10 | 8 | 312 | 8 | 326 | 3.52e-70 | 221 |
| Msa0881280 | MtrunA17_Chr2g0322861 | 39.252 | 321 | 170 | 7 | 10 | 312 | 73 | 386 | 4.05e-70 | 222 |
| Msa0881280 | MtrunA17_Chr4g0038171 | 41.390 | 331 | 165 | 11 | 1 | 312 | 1 | 321 | 5.60e-70 | 220 |
| Msa0881280 | MtrunA17_Chr7g0258811 | 40.122 | 329 | 170 | 10 | 3 | 312 | 51 | 371 | 6.66e-70 | 221 |
| Msa0881280 | MtrunA17_Chr2g0292271 | 40.000 | 330 | 175 | 8 | 1 | 312 | 6 | 330 | 1.07e-68 | 218 |
| Msa0881280 | MtrunA17_Chr2g0292211 | 39.752 | 322 | 171 | 7 | 9 | 312 | 25 | 341 | 1.92e-68 | 217 |
| Msa0881280 | MtrunA17_Chr4g0038151 | 40.483 | 331 | 168 | 10 | 1 | 312 | 1 | 321 | 4.79e-68 | 215 |
| Msa0881280 | MtrunA17_Chr2g0292181 | 38.138 | 333 | 179 | 8 | 2 | 312 | 12 | 339 | 1.75e-67 | 215 |
| Msa0881280 | MtrunA17_Chr2g0292151 | 39.550 | 311 | 165 | 8 | 20 | 312 | 25 | 330 | 3.94e-67 | 214 |
| Msa0881280 | MtrunA17_Chr4g0038161 | 40.303 | 330 | 169 | 9 | 1 | 312 | 1 | 320 | 5.06e-67 | 212 |
| Msa0881280 | MtrunA17_Chr2g0292251 | 40.514 | 311 | 162 | 8 | 20 | 312 | 24 | 329 | 2.37e-66 | 212 |
| Msa0881280 | MtrunA17_Chr1g0157051 | 35.714 | 322 | 185 | 5 | 1 | 308 | 1 | 314 | 6.09e-66 | 209 |
| Msa0881280 | MtrunA17_Chr2g0292111 | 37.237 | 333 | 182 | 9 | 2 | 312 | 3 | 330 | 1.62e-65 | 209 |
| Msa0881280 | MtrunA17_Chr2g0291751 | 38.941 | 321 | 169 | 9 | 12 | 312 | 17 | 330 | 2.27e-65 | 209 |
| Msa0881280 | MtrunA17_Chr2g0292261 | 40.514 | 311 | 162 | 8 | 20 | 312 | 25 | 330 | 8.82e-65 | 207 |
| Msa0881280 | MtrunA17_Chr2g0299691 | 39.077 | 325 | 176 | 7 | 6 | 312 | 38 | 358 | 1.17e-64 | 207 |
| Msa0881280 | MtrunA17_Chr7g0244451 | 38.871 | 319 | 166 | 8 | 11 | 312 | 10 | 316 | 1.83e-64 | 206 |
| Msa0881280 | MtrunA17_Chr7g0254231 | 39.604 | 303 | 156 | 7 | 24 | 312 | 22 | 311 | 3.05e-64 | 205 |
| Msa0881280 | MtrunA17_Chr4g0024121 | 37.654 | 324 | 180 | 7 | 6 | 312 | 8 | 326 | 8.23e-64 | 204 |
| Msa0881280 | MtrunA17_Chr2g0292241 | 39.228 | 311 | 166 | 7 | 20 | 312 | 25 | 330 | 1.15e-63 | 205 |
| Msa0881280 | MtrunA17_Chr4g0068621 | 38.710 | 310 | 166 | 8 | 20 | 312 | 34 | 336 | 1.28e-63 | 204 |
| Msa0881280 | MtrunA17_Chr2g0292091 | 38.253 | 332 | 178 | 10 | 1 | 312 | 1 | 325 | 3.43e-63 | 203 |
| Msa0881280 | MtrunA17_Chr5g0404721 | 40.196 | 306 | 161 | 10 | 24 | 312 | 30 | 330 | 6.79e-63 | 202 |
| Msa0881280 | MtrunA17_Chr7g0244461 | 36.533 | 323 | 176 | 7 | 5 | 312 | 4 | 312 | 2.88e-62 | 200 |
| Msa0881280 | MtrunA17_Chr3g0129051 | 38.291 | 316 | 167 | 8 | 10 | 308 | 14 | 318 | 4.26e-62 | 199 |
| Msa0881280 | MtrunA17_Chr3g0106921 | 38.650 | 326 | 168 | 9 | 6 | 312 | 8 | 320 | 3.61e-61 | 197 |
| Msa0881280 | MtrunA17_Chr5g0432441 | 39.755 | 327 | 166 | 9 | 5 | 312 | 12 | 326 | 3.71e-61 | 197 |
| Msa0881280 | MtrunA17_Chr7g0268501 | 38.110 | 328 | 177 | 8 | 1 | 312 | 3 | 320 | 6.89e-61 | 196 |
| Msa0881280 | MtrunA17_Chr7g0268521 | 38.110 | 328 | 177 | 8 | 1 | 312 | 3 | 320 | 6.89e-61 | 196 |
| Msa0881280 | MtrunA17_Chr6g0460711 | 37.658 | 316 | 178 | 7 | 9 | 312 | 6 | 314 | 8.76e-61 | 196 |
| Msa0881280 | MtrunA17_Chr7g0254201 | 36.513 | 304 | 171 | 6 | 22 | 312 | 18 | 312 | 5.37e-60 | 194 |
| Msa0881280 | MtrunA17_Chr3g0128061 | 37.963 | 324 | 176 | 10 | 8 | 312 | 9 | 326 | 6.25e-60 | 194 |
| Msa0881280 | MtrunA17_Chr4g0013191 | 39.048 | 315 | 163 | 10 | 16 | 312 | 37 | 340 | 6.93e-60 | 194 |
| Msa0881280 | MtrunA17_Chr4g0013171 | 36.747 | 332 | 179 | 8 | 1 | 312 | 1 | 321 | 2.01e-59 | 192 |
| Msa0881280 | MtrunA17_Chr6g0477071 | 37.086 | 302 | 164 | 8 | 24 | 312 | 54 | 342 | 3.52e-59 | 192 |
| Msa0881280 | MtrunA17_Chr5g0438021 | 36.607 | 336 | 178 | 10 | 1 | 312 | 1 | 325 | 3.59e-59 | 192 |
| Msa0881280 | MtrunA17_Chr2g0292291 | 35.928 | 334 | 186 | 10 | 2 | 312 | 4 | 332 | 4.38e-59 | 193 |
| Msa0881280 | MtrunA17_Chr7g0225221 | 37.152 | 323 | 179 | 7 | 5 | 312 | 7 | 320 | 7.80e-59 | 191 |
| Msa0881280 | MtrunA17_Chr8g0372601 | 37.459 | 307 | 172 | 6 | 22 | 312 | 28 | 330 | 8.02e-59 | 191 |
| Msa0881280 | MtrunA17_Chr8g0371381 | 35.974 | 303 | 171 | 5 | 24 | 312 | 26 | 319 | 1.09e-58 | 191 |
| Msa0881280 | MtrunA17_Chr1g0148021 | 34.242 | 330 | 194 | 6 | 1 | 312 | 4 | 328 | 1.22e-58 | 191 |
| Msa0881280 | MtrunA17_Chr1g0204011 | 34.483 | 319 | 186 | 7 | 9 | 312 | 12 | 322 | 1.64e-58 | 190 |
| Msa0881280 | MtrunA17_Chr1g0194151 | 36.145 | 332 | 182 | 8 | 6 | 312 | 7 | 333 | 2.44e-58 | 190 |
| Msa0881280 | MtrunA17_Chr2g0329641 | 38.907 | 311 | 163 | 8 | 21 | 312 | 33 | 335 | 9.47e-58 | 189 |
| Msa0881280 | MtrunA17_Chr2g0296621 | 37.086 | 302 | 167 | 7 | 24 | 312 | 50 | 341 | 1.52e-57 | 189 |
| Msa0881280 | MtrunA17_Chr2g0320071 | 35.474 | 327 | 182 | 7 | 1 | 312 | 5 | 317 | 1.62e-57 | 187 |
| Msa0881280 | MtrunA17_Chr3g0129061 | 37.658 | 316 | 169 | 9 | 10 | 308 | 14 | 318 | 2.20e-57 | 187 |
| Msa0881280 | MtrunA17_Chr2g0292101 | 36.280 | 328 | 182 | 9 | 5 | 312 | 6 | 326 | 2.77e-57 | 188 |
| Msa0881280 | MtrunA17_Chr3g0114451 | 36.391 | 327 | 175 | 7 | 8 | 312 | 3 | 318 | 5.53e-57 | 186 |
| Msa0881280 | MtrunA17_Chr2g0320101 | 35.366 | 328 | 185 | 7 | 1 | 312 | 1 | 317 | 2.63e-56 | 184 |
| Msa0881280 | MtrunA17_Chr2g0320051 | 36.923 | 325 | 175 | 9 | 4 | 312 | 8 | 318 | 2.82e-56 | 184 |
| Msa0881280 | MtrunA17_Chr4g0013181 | 37.086 | 302 | 162 | 7 | 28 | 312 | 63 | 353 | 6.28e-56 | 184 |
| Msa0881280 | MtrunA17_Chr2g0320091 | 35.562 | 329 | 184 | 8 | 1 | 312 | 1 | 318 | 2.31e-55 | 182 |
| Msa0881280 | MtrunA17_Chr5g0405991 | 35.061 | 328 | 185 | 9 | 1 | 312 | 1 | 316 | 3.29e-55 | 182 |
| Msa0881280 | MtrunA17_Chr2g0320061 | 36.890 | 328 | 171 | 12 | 4 | 312 | 8 | 318 | 8.36e-55 | 181 |
| Msa0881280 | MtrunA17_Chr5g0401431 | 35.780 | 327 | 183 | 9 | 4 | 309 | 6 | 326 | 8.91e-55 | 181 |
| Msa0881280 | MtrunA17_Chr4g0076211 | 36.000 | 300 | 170 | 6 | 26 | 312 | 43 | 333 | 1.43e-54 | 181 |
| Msa0881280 | MtrunA17_Chr3g0136751 | 34.862 | 327 | 187 | 7 | 2 | 312 | 6 | 322 | 3.82e-54 | 179 |
| Msa0881280 | MtrunA17_Chr1g0188431 | 35.185 | 324 | 176 | 9 | 10 | 312 | 17 | 327 | 4.01e-54 | 179 |
| Msa0881280 | MtrunA17_Chr2g0316191 | 34.030 | 335 | 170 | 8 | 22 | 309 | 74 | 404 | 1.72e-53 | 180 |
| Msa0881280 | MtrunA17_Chr1g0213061 | 34.462 | 325 | 183 | 8 | 6 | 312 | 9 | 321 | 2.13e-53 | 177 |
| Msa0881280 | MtrunA17_Chr2g0316791 | 34.132 | 334 | 170 | 9 | 22 | 309 | 74 | 403 | 3.42e-53 | 179 |
| Msa0881280 | MtrunA17_Chr1g0197411 | 36.308 | 325 | 181 | 9 | 9 | 312 | 11 | 330 | 3.67e-53 | 177 |
| Msa0881280 | MtrunA17_Chr4g0072091 | 37.582 | 306 | 170 | 8 | 23 | 312 | 23 | 323 | 4.09e-53 | 176 |
| Msa0881280 | MtrunA17_Chr2g0316831 | 34.030 | 335 | 169 | 9 | 22 | 309 | 110 | 439 | 4.52e-53 | 179 |
| Msa0881280 | MtrunA17_Chr1g0194271 | 34.218 | 339 | 186 | 8 | 6 | 312 | 7 | 340 | 5.41e-53 | 177 |
| Msa0881280 | MtrunA17_Chr3g0106901 | 37.273 | 330 | 178 | 7 | 1 | 312 | 5 | 323 | 1.37e-52 | 175 |
| Msa0881280 | MtrunA17_Chr4g0013201 | 35.294 | 306 | 172 | 7 | 22 | 312 | 44 | 338 | 1.61e-52 | 175 |
| Msa0881280 | MtrunA17_Chr7g0224371 | 35.802 | 324 | 178 | 9 | 6 | 312 | 12 | 322 | 3.25e-52 | 174 |
| Msa0881280 | MtrunA17_Chr2g0320031 | 34.056 | 323 | 186 | 7 | 6 | 312 | 8 | 319 | 9.50e-52 | 173 |
| Msa0881280 | MtrunA17_Chr2g0316481 | 32.934 | 334 | 174 | 8 | 22 | 309 | 74 | 403 | 1.08e-51 | 175 |
| Msa0881280 | MtrunA17_Chr3g0129041 | 36.875 | 320 | 174 | 8 | 10 | 312 | 14 | 322 | 1.63e-51 | 172 |
| Msa0881280 | MtrunA17_Chr1g0164891 | 35.714 | 308 | 173 | 8 | 25 | 312 | 90 | 392 | 4.19e-51 | 173 |
| Msa0881280 | MtrunA17_Chr5g0400331 | 37.304 | 319 | 170 | 9 | 17 | 312 | 20 | 331 | 8.51e-51 | 171 |
| Msa0881280 | MtrunA17_Chr4g0013721 | 36.218 | 312 | 175 | 8 | 17 | 312 | 93 | 396 | 1.40e-50 | 172 |
| Msa0881280 | MtrunA17_Chr4g0053871 | 34.756 | 328 | 182 | 9 | 5 | 311 | 7 | 323 | 2.82e-50 | 169 |
| Msa0881280 | MtrunA17_Chr4g0013821 | 35.275 | 309 | 176 | 9 | 20 | 312 | 24 | 324 | 1.16e-48 | 166 |
| Msa0881280 | MtrunA17_Chr4g0046131 | 35.294 | 340 | 181 | 9 | 4 | 309 | 9 | 343 | 1.22e-48 | 166 |
| Msa0881280 | MtrunA17_Chr2g0311251 | 32.335 | 334 | 175 | 8 | 22 | 309 | 9 | 337 | 3.89e-48 | 164 |
| Msa0881280 | MtrunA17_Chr3g0107881 | 34.848 | 330 | 181 | 10 | 3 | 312 | 9 | 324 | 5.60e-48 | 163 |
| Msa0881280 | MtrunA17_Chr1g0155611 | 36.513 | 304 | 168 | 8 | 28 | 312 | 50 | 347 | 6.64e-47 | 161 |
| Msa0881280 | MtrunA17_Chr8g0364291 | 33.832 | 334 | 184 | 11 | 5 | 312 | 2 | 324 | 3.00e-46 | 159 |
| Msa0881280 | MtrunA17_Chr5g0432331 | 33.750 | 320 | 180 | 10 | 13 | 312 | 45 | 352 | 1.06e-45 | 158 |
| Msa0881280 | MtrunA17_Chr5g0421411 | 35.495 | 293 | 151 | 9 | 47 | 312 | 4 | 285 | 3.30e-45 | 155 |
| Msa0881280 | MtrunA17_Chr5g0432351 | 32.934 | 334 | 182 | 11 | 4 | 312 | 5 | 321 | 3.31e-45 | 156 |
| Msa0881280 | MtrunA17_Chr2g0311241 | 29.412 | 374 | 174 | 7 | 22 | 309 | 58 | 427 | 6.08e-45 | 158 |
| Msa0881280 | MtrunA17_Chr5g0432341 | 33.133 | 332 | 180 | 11 | 6 | 312 | 7 | 321 | 2.88e-44 | 153 |
| Msa0881280 | MtrunA17_Chr6g0451571 | 32.615 | 325 | 189 | 9 | 9 | 312 | 19 | 334 | 2.71e-43 | 151 |
| Msa0881280 | MtrunA17_Chr2g0316811 | 36.325 | 234 | 113 | 6 | 22 | 221 | 48 | 279 | 2.14e-42 | 149 |
| Msa0881280 | MtrunA17_Chr4g0075241 | 32.484 | 314 | 176 | 10 | 22 | 312 | 27 | 327 | 6.98e-42 | 147 |
| Msa0881280 | MtrunA17_Chr6g0467251 | 32.121 | 330 | 191 | 7 | 5 | 312 | 10 | 328 | 1.76e-41 | 147 |
| Msa0881280 | MtrunA17_Chr5g0432401 | 33.654 | 312 | 155 | 11 | 9 | 308 | 11 | 282 | 3.34e-41 | 144 |
| Msa0881280 | MtrunA17_Chr1g0181511 | 31.210 | 314 | 180 | 8 | 21 | 312 | 24 | 323 | 4.65e-41 | 145 |
| Msa0881280 | MtrunA17_Chr6g0467161 | 31.683 | 303 | 182 | 7 | 24 | 312 | 45 | 336 | 7.95e-40 | 142 |
| Msa0881280 | MtrunA17_Chr4g0074851 | 29.607 | 331 | 202 | 7 | 4 | 312 | 7 | 328 | 9.58e-40 | 142 |
| Msa0881280 | MtrunA17_Chr5g0413051 | 31.529 | 314 | 187 | 9 | 21 | 312 | 70 | 377 | 7.15e-39 | 140 |
| Msa0881280 | MtrunA17_Chr6g0467121 | 29.518 | 332 | 200 | 9 | 3 | 312 | 44 | 363 | 2.38e-37 | 137 |
| Msa0881280 | MtrunA17_Chr1g0181481 | 30.255 | 314 | 183 | 7 | 21 | 312 | 24 | 323 | 8.53e-37 | 134 |
| Msa0881280 | MtrunA17_Chr1g0181431 | 30.032 | 313 | 183 | 7 | 22 | 312 | 25 | 323 | 2.43e-36 | 132 |
| Msa0881280 | MtrunA17_Chr3g0114491 | 50.435 | 115 | 53 | 3 | 18 | 129 | 13 | 126 | 9.33e-30 | 110 |
| Msa0881280 | MtrunA17_Chr4g0004591 | 27.273 | 319 | 157 | 7 | 24 | 309 | 77 | 353 | 3.00e-29 | 114 |
| Msa0881280 | MtrunA17_Chr2g0292281 | 35.211 | 213 | 112 | 7 | 113 | 312 | 17 | 216 | 4.82e-28 | 108 |
| Msa0881280 | MtrunA17_Chr2g0316141 | 29.710 | 276 | 147 | 8 | 70 | 309 | 11 | 275 | 2.50e-27 | 107 |
| Msa0881280 | MtrunA17_Chr2g0316181 | 29.710 | 276 | 147 | 8 | 70 | 309 | 11 | 275 | 2.50e-27 | 107 |
| Msa0881280 | MtrunA17_Chr6g0468731 | 61.765 | 68 | 25 | 1 | 63 | 130 | 22 | 88 | 1.59e-23 | 92.4 |
| Msa0881280 | MtrunA17_Chr1g0181491 | 41.964 | 112 | 62 | 2 | 21 | 130 | 9 | 119 | 2.71e-21 | 88.2 |
| Msa0881280 | MtrunA17_Chr7g0254181 | 44.681 | 94 | 50 | 1 | 84 | 177 | 22 | 113 | 1.66e-19 | 83.6 |
| Msa0881280 | MtrunA17_Chr3g0114461 | 29.146 | 199 | 117 | 5 | 127 | 312 | 5 | 192 | 1.12e-14 | 71.2 |
| Msa0881280 | MtrunA17_Chr7g0254171 | 43.678 | 87 | 46 | 2 | 70 | 153 | 4 | 90 | 1.61e-14 | 69.7 |
| Msa0881280 | MtrunA17_Chr1g0196191 | 50.000 | 74 | 33 | 2 | 57 | 128 | 20 | 91 | 8.29e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881280 | AT4G25980.1 | 62.893 | 318 | 103 | 3 | 7 | 312 | 12 | 326 | 1.34e-140 | 400 |
| Msa0881280 | AT1G77100.1 | 52.960 | 321 | 131 | 5 | 5 | 312 | 6 | 319 | 1.35e-105 | 311 |
| Msa0881280 | AT2G41480.1 | 46.769 | 325 | 159 | 4 | 1 | 312 | 5 | 328 | 1.81e-96 | 288 |
| Msa0881280 | AT5G64120.1 | 45.574 | 305 | 149 | 4 | 19 | 312 | 30 | 328 | 1.35e-87 | 265 |
| Msa0881280 | AT5G39580.1 | 42.991 | 321 | 163 | 4 | 4 | 312 | 7 | 319 | 2.72e-84 | 257 |
| Msa0881280 | AT5G64100.1 | 43.243 | 333 | 159 | 8 | 4 | 312 | 5 | 331 | 1.33e-78 | 243 |
| Msa0881280 | AT5G17820.1 | 43.260 | 319 | 157 | 8 | 6 | 312 | 7 | 313 | 8.21e-77 | 238 |
| Msa0881280 | AT5G17820.2 | 43.260 | 319 | 157 | 8 | 6 | 312 | 60 | 366 | 4.99e-76 | 237 |
| Msa0881280 | AT1G05260.1 | 41.486 | 323 | 170 | 7 | 5 | 312 | 7 | 325 | 1.77e-75 | 234 |
| Msa0881280 | AT5G64110.1 | 41.975 | 324 | 162 | 7 | 9 | 312 | 13 | 330 | 2.78e-75 | 234 |
| Msa0881280 | AT5G15180.1 | 41.590 | 327 | 171 | 8 | 1 | 312 | 8 | 329 | 4.36e-74 | 231 |
| Msa0881280 | AT3G01190.1 | 41.745 | 321 | 168 | 6 | 5 | 312 | 7 | 321 | 3.12e-73 | 228 |
| Msa0881280 | AT4G11290.1 | 41.538 | 325 | 167 | 7 | 7 | 312 | 6 | 326 | 4.26e-72 | 226 |
| Msa0881280 | AT4G25980.2 | 68.182 | 154 | 49 | 0 | 20 | 173 | 67 | 220 | 2.06e-71 | 223 |
| Msa0881280 | AT1G05240.1 | 40.728 | 302 | 158 | 7 | 24 | 309 | 26 | 322 | 3.29e-70 | 221 |
| Msa0881280 | AT1G05250.1 | 40.728 | 302 | 158 | 7 | 24 | 309 | 26 | 322 | 3.29e-70 | 221 |
| Msa0881280 | AT3G21770.1 | 39.806 | 309 | 167 | 6 | 16 | 309 | 21 | 325 | 6.56e-70 | 220 |
| Msa0881280 | AT1G49570.1 | 42.395 | 309 | 154 | 9 | 19 | 308 | 43 | 346 | 1.07e-68 | 218 |
| Msa0881280 | AT4G36430.1 | 39.441 | 322 | 172 | 9 | 9 | 312 | 14 | 330 | 6.75e-66 | 210 |
| Msa0881280 | AT4G26010.1 | 38.679 | 318 | 168 | 6 | 8 | 312 | 6 | 309 | 1.25e-65 | 209 |
| Msa0881280 | AT4G26010.2 | 38.679 | 318 | 168 | 6 | 8 | 312 | 34 | 337 | 1.54e-65 | 209 |
| Msa0881280 | AT2G18150.1 | 35.714 | 336 | 186 | 8 | 2 | 312 | 6 | 336 | 1.31e-64 | 207 |
| Msa0881280 | AT5G06730.1 | 36.391 | 327 | 185 | 8 | 4 | 312 | 13 | 334 | 7.12e-64 | 206 |
| Msa0881280 | AT4G37530.1 | 39.432 | 317 | 164 | 8 | 17 | 312 | 20 | 329 | 1.33e-63 | 204 |
| Msa0881280 | AT1G14550.1 | 37.576 | 330 | 179 | 7 | 1 | 312 | 1 | 321 | 4.45e-63 | 202 |
| Msa0881280 | AT2G18140.1 | 35.224 | 335 | 188 | 8 | 2 | 312 | 6 | 335 | 4.84e-63 | 203 |
| Msa0881280 | AT3G03670.1 | 37.654 | 324 | 176 | 7 | 7 | 312 | 6 | 321 | 7.15e-63 | 202 |
| Msa0881280 | AT3G32980.1 | 37.576 | 330 | 179 | 9 | 5 | 312 | 10 | 334 | 1.34e-62 | 202 |
| Msa0881280 | AT1G14540.1 | 38.110 | 328 | 174 | 8 | 1 | 312 | 1 | 315 | 1.56e-62 | 201 |
| Msa0881280 | AT5G05340.1 | 39.482 | 309 | 159 | 9 | 21 | 312 | 27 | 324 | 1.78e-62 | 201 |
| Msa0881280 | AT3G49960.1 | 39.403 | 335 | 174 | 11 | 1 | 312 | 1 | 329 | 2.49e-62 | 201 |
| Msa0881280 | AT4G08780.1 | 37.700 | 313 | 170 | 8 | 20 | 312 | 20 | 327 | 1.18e-61 | 199 |
| Msa0881280 | AT4G37520.1 | 38.065 | 310 | 168 | 7 | 22 | 312 | 25 | 329 | 1.74e-61 | 199 |
| Msa0881280 | AT1G34510.1 | 38.125 | 320 | 167 | 8 | 8 | 312 | 6 | 309 | 1.91e-61 | 198 |
| Msa0881280 | AT4G30170.1 | 36.928 | 306 | 173 | 5 | 22 | 312 | 25 | 325 | 2.98e-61 | 198 |
| Msa0881280 | AT5G19890.1 | 36.474 | 329 | 183 | 10 | 1 | 312 | 8 | 327 | 3.27e-61 | 198 |
| Msa0881280 | AT5G67400.1 | 38.507 | 335 | 177 | 10 | 1 | 312 | 1 | 329 | 1.22e-60 | 196 |
| Msa0881280 | AT3G49110.1 | 37.380 | 313 | 171 | 8 | 20 | 312 | 29 | 336 | 1.26e-59 | 194 |
| Msa0881280 | AT2G18980.1 | 35.714 | 322 | 186 | 6 | 7 | 312 | 7 | 323 | 2.60e-59 | 193 |
| Msa0881280 | AT4G37520.2 | 38.065 | 310 | 165 | 8 | 22 | 312 | 25 | 326 | 3.46e-59 | 192 |
| Msa0881280 | AT5G58400.1 | 38.509 | 322 | 166 | 10 | 6 | 308 | 13 | 321 | 5.18e-59 | 192 |
| Msa0881280 | AT5G06720.1 | 35.692 | 325 | 186 | 9 | 6 | 312 | 14 | 333 | 5.31e-59 | 192 |
| Msa0881280 | AT5G66390.1 | 36.977 | 311 | 174 | 7 | 19 | 312 | 28 | 333 | 7.70e-59 | 192 |
| Msa0881280 | AT5G22410.1 | 37.578 | 322 | 173 | 9 | 7 | 308 | 8 | 321 | 1.15e-58 | 191 |
| Msa0881280 | AT4G08770.1 | 36.792 | 318 | 176 | 8 | 15 | 312 | 15 | 327 | 1.17e-58 | 192 |
| Msa0881280 | AT5G51890.1 | 35.987 | 314 | 178 | 8 | 5 | 301 | 7 | 314 | 1.67e-58 | 191 |
| Msa0881280 | AT5G42180.1 | 34.700 | 317 | 187 | 5 | 6 | 307 | 5 | 316 | 2.72e-58 | 190 |
| Msa0881280 | AT3G49120.1 | 36.741 | 313 | 173 | 8 | 20 | 312 | 28 | 335 | 3.08e-57 | 188 |
| Msa0881280 | AT5G19880.1 | 37.117 | 326 | 177 | 8 | 10 | 312 | 9 | 329 | 1.17e-56 | 186 |
| Msa0881280 | AT2G38390.1 | 35.110 | 319 | 183 | 8 | 13 | 312 | 20 | 333 | 1.19e-55 | 184 |
| Msa0881280 | AT2G38380.1 | 34.985 | 323 | 186 | 8 | 9 | 312 | 16 | 333 | 3.04e-55 | 183 |
| Msa0881280 | AT3G50990.1 | 34.940 | 332 | 183 | 9 | 7 | 312 | 17 | 341 | 5.23e-55 | 182 |
| Msa0881280 | AT5G14130.1 | 35.976 | 328 | 184 | 9 | 1 | 312 | 13 | 330 | 2.65e-54 | 180 |
| Msa0881280 | AT4G33870.1 | 32.000 | 350 | 182 | 10 | 11 | 309 | 54 | 398 | 3.92e-54 | 182 |
| Msa0881280 | AT5G14130.2 | 35.976 | 328 | 184 | 9 | 1 | 312 | 54 | 371 | 7.79e-54 | 180 |
| Msa0881280 | AT5G58390.1 | 36.364 | 319 | 172 | 8 | 9 | 308 | 6 | 312 | 4.74e-53 | 176 |
| Msa0881280 | AT1G44970.1 | 37.217 | 309 | 171 | 7 | 22 | 312 | 43 | 346 | 8.09e-53 | 177 |
| Msa0881280 | AT4G16270.1 | 36.601 | 306 | 170 | 8 | 24 | 312 | 50 | 348 | 8.42e-53 | 177 |
| Msa0881280 | AT2G43480.1 | 37.578 | 322 | 165 | 12 | 15 | 312 | 26 | 335 | 3.80e-51 | 172 |
| Msa0881280 | AT5G24070.1 | 34.795 | 342 | 186 | 9 | 1 | 312 | 1 | 335 | 9.48e-51 | 171 |
| Msa0881280 | AT1G68850.1 | 32.945 | 343 | 186 | 13 | 6 | 312 | 1 | 335 | 2.29e-50 | 170 |
| Msa0881280 | AT4G31760.1 | 34.062 | 320 | 186 | 6 | 10 | 312 | 15 | 326 | 3.55e-50 | 169 |
| Msa0881280 | AT4G17690.1 | 36.964 | 303 | 163 | 10 | 28 | 312 | 30 | 322 | 3.82e-50 | 169 |
| Msa0881280 | AT5G47000.1 | 36.336 | 333 | 173 | 11 | 4 | 312 | 13 | 330 | 5.32e-50 | 169 |
| Msa0881280 | AT4G33420.1 | 35.762 | 302 | 168 | 8 | 24 | 312 | 37 | 325 | 4.71e-49 | 166 |
| Msa0881280 | AT1G71695.1 | 34.967 | 306 | 172 | 9 | 24 | 312 | 44 | 339 | 1.23e-48 | 166 |
| Msa0881280 | AT2G24800.1 | 35.065 | 308 | 176 | 7 | 22 | 312 | 29 | 329 | 1.26e-48 | 165 |
| Msa0881280 | AT4G33420.2 | 35.762 | 302 | 168 | 8 | 24 | 312 | 84 | 372 | 2.15e-48 | 166 |
| Msa0881280 | AT5G39580.2 | 48.503 | 167 | 83 | 2 | 4 | 170 | 7 | 170 | 4.04e-48 | 161 |
| Msa0881280 | AT2G35380.1 | 34.615 | 338 | 181 | 9 | 5 | 312 | 8 | 335 | 1.18e-47 | 163 |
| Msa0881280 | AT2G34060.1 | 36.452 | 310 | 171 | 7 | 23 | 311 | 41 | 345 | 1.59e-47 | 163 |
| Msa0881280 | AT4G37530.2 | 38.077 | 260 | 138 | 7 | 17 | 255 | 20 | 277 | 7.92e-47 | 159 |
| Msa0881280 | AT3G28200.1 | 34.824 | 313 | 171 | 10 | 20 | 312 | 17 | 316 | 3.42e-46 | 159 |
| Msa0881280 | AT1G30870.1 | 33.993 | 303 | 178 | 8 | 24 | 312 | 51 | 345 | 1.29e-45 | 158 |
| Msa0881280 | AT2G22420.1 | 31.562 | 320 | 195 | 8 | 9 | 312 | 8 | 319 | 8.16e-45 | 155 |
| Msa0881280 | AT5G40150.1 | 34.385 | 317 | 182 | 7 | 13 | 312 | 21 | 328 | 8.86e-45 | 155 |
| Msa0881280 | AT2G39040.1 | 33.438 | 317 | 177 | 9 | 21 | 312 | 43 | 350 | 1.70e-43 | 152 |
| Msa0881280 | AT4G21960.1 | 31.373 | 306 | 184 | 6 | 24 | 312 | 31 | 327 | 4.21e-42 | 148 |
| Msa0881280 | AT1G24110.1 | 32.154 | 311 | 185 | 6 | 21 | 312 | 19 | 322 | 7.23e-42 | 147 |
| Msa0881280 | AT3G17070.1 | 30.275 | 327 | 199 | 7 | 4 | 308 | 16 | 335 | 6.99e-37 | 135 |
| Msa0881280 | AT2G24800.2 | 41.899 | 179 | 97 | 4 | 22 | 194 | 29 | 206 | 1.81e-36 | 131 |
| Msa0881280 | AT2G37130.1 | 30.032 | 313 | 182 | 9 | 23 | 312 | 29 | 327 | 3.86e-33 | 124 |
| Msa0881280 | AT2G37130.2 | 30.000 | 310 | 180 | 9 | 26 | 312 | 1 | 296 | 1.76e-32 | 122 |
| Msa0881280 | AT2G35380.2 | 31.496 | 254 | 139 | 7 | 84 | 312 | 4 | 247 | 3.92e-26 | 104 |
| Msa0881280 | AT3G17070.2 | 28.897 | 263 | 159 | 7 | 66 | 308 | 18 | 272 | 1.54e-22 | 95.1 |
Find 58 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCACCTTGCTTTCAGTTC+TGG | 0.179644 | 6_1:-28323251 | None:intergenic |
| GGTCCAAATGTTGGATTTAT+AGG | 0.216242 | 6_1:-28323440 | None:intergenic |
| GGCACCTTGCTTTCAGTTCT+GGG | 0.266441 | 6_1:-28323250 | None:intergenic |
| TCAGTTCTGGGAGGAAATTC+AGG | 0.277375 | 6_1:-28323238 | None:intergenic |
| TTGTTGATATCTCCATCCTT+AGG | 0.338339 | 6_1:-28323272 | None:intergenic |
| AATCCTATAAATCCAACATT+TGG | 0.339432 | 6_1:+28323437 | Msa0881280:CDS |
| TTATTCTTAATCTTAATTGA+TGG | 0.347013 | 6_1:+28320867 | Msa0881280:CDS |
| CCATGGCTGCTGTTCTTCTC+AGG | 0.361244 | 6_1:+28320991 | Msa0881280:CDS |
| TGTGGAGATGCAGTCTTCTC+TGG | 0.367035 | 6_1:-28321162 | None:intergenic |
| TCTCCACATGCAGGTGTTAG+AGG | 0.385000 | 6_1:+28321177 | Msa0881280:CDS |
| AATTCAGCTGCTCATACAAT+TGG | 0.400962 | 6_1:+28323143 | Msa0881280:intron |
| AGGAAATTCAGGTTAATAGT+TGG | 0.429063 | 6_1:-28323227 | None:intergenic |
| TGTTGATATCTCCATCCTTA+GGG | 0.431103 | 6_1:-28323271 | None:intergenic |
| CAGGTTCTGTTGGAAACATT+AGG | 0.432651 | 6_1:+28323522 | Msa0881280:CDS |
| GGAAATTCAGGTTAATAGTT+GGG | 0.434698 | 6_1:-28323226 | None:intergenic |
| TTGTGCAGATATTGTTGCTT+TGG | 0.448468 | 6_1:+28321260 | Msa0881280:CDS |
| CCTGCATATCAAGTTCCAAC+AGG | 0.455143 | 6_1:+28321455 | Msa0881280:CDS |
| CCTGTTGGAACTTGATATGC+AGG | 0.459129 | 6_1:-28321455 | None:intergenic |
| GAGACCCTTGTTCAGAAACT+TGG | 0.470684 | 6_1:-28321558 | None:intergenic |
| TGATGTTACATGCAGGCAAA+TGG | 0.471696 | 6_1:+28321431 | Msa0881280:intron |
| ATAGTTGGGTCTGATCCAAA+TGG | 0.477620 | 6_1:-28323212 | None:intergenic |
| TGGATTTATAGGATTAAAGT+AGG | 0.481291 | 6_1:-28323429 | None:intergenic |
| AACAGGGAGAAGAGATGGAT+TGG | 0.483056 | 6_1:+28321472 | Msa0881280:CDS |
| AGATGCTTCTAATTGTGCCT+TGG | 0.487334 | 6_1:-28321220 | None:intergenic |
| TCAAAAGAAGGTCCAAATGT+TGG | 0.498612 | 6_1:-28323449 | None:intergenic |
| AAACGTTTAGCCATGGATGA+AGG | 0.499351 | 6_1:+28323293 | Msa0881280:CDS |
| AATCCATCTCTTCTCCCTGT+TGG | 0.503118 | 6_1:-28321470 | None:intergenic |
| TCTGCACAAGAAACCACTCC+TGG | 0.512606 | 6_1:-28321246 | None:intergenic |
| CAAGGCCAAGTTTCTGAACA+AGG | 0.517501 | 6_1:+28321553 | Msa0881280:CDS |
| ATCTCTTGCAGATAATATGC+CGG | 0.534359 | 6_1:+28321505 | Msa0881280:CDS |
| CAGATCACTCCCTTCATCCA+TGG | 0.535133 | 6_1:-28323303 | None:intergenic |
| TGAATTGAATCATCGACATC+CGG | 0.542004 | 6_1:-28321524 | None:intergenic |
| TCTAAGAGTCAGCTTCATGT+TGG | 0.543325 | 6_1:+28320891 | Msa0881280:CDS |
| GGACAAATTGGAGTGAAGAC+AGG | 0.545026 | 6_1:+28323503 | Msa0881280:CDS |
| CCTGAGAAGAACAGCAGCCA+TGG | 0.549117 | 6_1:-28320991 | None:intergenic |
| TAGTTGGGTCTGATCCAAAT+GGG | 0.549334 | 6_1:-28323211 | None:intergenic |
| GTTCCAACAGGGAGAAGAGA+TGG | 0.549752 | 6_1:+28321467 | Msa0881280:CDS |
| CAATTAGAAGCATCTTGTCC+AGG | 0.557883 | 6_1:+28321228 | Msa0881280:CDS |
| GGAGTGAAGACAGGTTCTGT+TGG | 0.558812 | 6_1:+28323512 | Msa0881280:CDS |
| CAGCTTCTCTAACAACATCA+TGG | 0.559846 | 6_1:-28320953 | None:intergenic |
| AAAGCAAGGTGCCCTAAGGA+TGG | 0.570656 | 6_1:+28323260 | Msa0881280:CDS |
| TCCTCCCAGAACTGAAAGCA+AGG | 0.572671 | 6_1:+28323246 | Msa0881280:CDS |
| AACGTTTAGCCATGGATGAA+GGG | 0.576082 | 6_1:+28323294 | Msa0881280:CDS |
| ACTGAAAGCAAGGTGCCCTA+AGG | 0.579558 | 6_1:+28323256 | Msa0881280:CDS |
| AGAAGCATCTTGTCCAGGAG+TGG | 0.580324 | 6_1:+28321233 | Msa0881280:CDS |
| AAGACTGCATCTCCACATGC+AGG | 0.590000 | 6_1:+28321168 | Msa0881280:CDS |
| TATCAACAAACGTTTAGCCA+TGG | 0.597225 | 6_1:+28323286 | Msa0881280:CDS |
| AGCAAGAGATGCAATTGTCA+TGG | 0.601325 | 6_1:+28321284 | Msa0881280:CDS |
| CTCTACTTGAGGACATGTGT+TGG | 0.603991 | 6_1:-28320922 | None:intergenic |
| TGATTCAATTCAGCAACTCA+AGG | 0.616311 | 6_1:+28321535 | Msa0881280:CDS |
| TCTCATAAAGAAGCATGCTG+TGG | 0.627216 | 6_1:-28323168 | None:intergenic |
| TATCCTCTAACACCTGCATG+TGG | 0.631759 | 6_1:-28321180 | None:intergenic |
| TGTTCTTTCTGACAGAACCA+TGG | 0.637868 | 6_1:+28320974 | Msa0881280:CDS |
| ACCTTGCTTTCAGTTCTGGG+AGG | 0.637941 | 6_1:-28323247 | None:intergenic |
| TGGACAGTGGACTCTACTTG+AGG | 0.644794 | 6_1:-28320933 | None:intergenic |
| TCTAACAACATCATGGACAG+TGG | 0.665227 | 6_1:-28320946 | None:intergenic |
| CTGCATATCAAGTTCCAACA+GGG | 0.673250 | 6_1:+28321456 | Msa0881280:CDS |
| AAGGCCAAGTTTCTGAACAA+GGG | 0.675709 | 6_1:+28321554 | Msa0881280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATAAATTTTTAAATAAG+TGG | + | chr6_1:28322502-28322521 | Msa0881280:intron | 10.0% |
| !! | TTATTCTTAATCTTAATTGA+TGG | + | chr6_1:28320867-28320886 | Msa0881280:CDS | 15.0% |
| !!! | TCATTTTCTAAAATTATTAC+CGG | - | chr6_1:28321701-28321720 | None:intergenic | 15.0% |
| !!! | TCCTTTTGTTTTATTTAATT+GGG | - | chr6_1:28322126-28322145 | None:intergenic | 15.0% |
| !!! | ATCCTTTTGTTTTATTTAAT+TGG | - | chr6_1:28322127-28322146 | None:intergenic | 15.0% |
| !!! | AATAGAACAAAATTCTAAAA+TGG | - | chr6_1:28322374-28322393 | None:intergenic | 15.0% |
| !! | ATGTATGAAAAAAATTTGAT+TGG | + | chr6_1:28322549-28322568 | Msa0881280:intron | 15.0% |
| !! | ATATCAATTAAATTCTTGTA+CGG | + | chr6_1:28323000-28323019 | Msa0881280:intron | 15.0% |
| !! | CAAAATCTTAAAAAAGTGAT+TGG | - | chr6_1:28322033-28322052 | None:intergenic | 20.0% |
| !!! | TAAGATTTTGTCAATTTTTC+AGG | + | chr6_1:28322043-28322062 | Msa0881280:intron | 20.0% |
| !! | TAAATAAAACAAAAGGATCT+TGG | + | chr6_1:28322129-28322148 | Msa0881280:intron | 20.0% |
| !! | AAATAAAACAAAAGGATCTT+GGG | + | chr6_1:28322130-28322149 | Msa0881280:intron | 20.0% |
| !! | TTTGGATTATAAAATTCGAA+CGG | + | chr6_1:28322219-28322238 | Msa0881280:intron | 20.0% |
| !! | AAAGAATGTTATGATAAAGT+GGG | - | chr6_1:28322268-28322287 | None:intergenic | 20.0% |
| !!! | ATTTGTGACTTGTATTATAT+AGG | + | chr6_1:28322699-28322718 | Msa0881280:intron | 20.0% |
| !! | AGAGTATATTGAAAAACATA+AGG | + | chr6_1:28323336-28323355 | Msa0881280:CDS | 20.0% |
| !! | GAGTATATTGAAAAACATAA+GGG | + | chr6_1:28323337-28323356 | Msa0881280:CDS | 20.0% |
| !!! | ACAAAATCATTTTCAAAAGA+AGG | - | chr6_1:28323464-28323483 | None:intergenic | 20.0% |
| ! | TTGAGGTCTTTCTATATATA+TGG | + | chr6_1:28321036-28321055 | Msa0881280:intron | 25.0% |
| !!! | TGATTTTGATTGAGTTTTTC+AGG | + | chr6_1:28321101-28321120 | Msa0881280:intron | 25.0% |
| !!! | GATTTTGATTGAGTTTTTCA+GGG | + | chr6_1:28321102-28321121 | Msa0881280:intron | 25.0% |
| ! | ATTAGAGTAAGTTAGGTATT+AGG | - | chr6_1:28321311-28321330 | None:intergenic | 25.0% |
| ! | ACACTTATTCAATCATAAAC+AGG | - | chr6_1:28321407-28321426 | None:intergenic | 25.0% |
| ! | TGTTTATGATTGAATAAGTG+TGG | + | chr6_1:28321406-28321425 | Msa0881280:intron | 25.0% |
| ! | AAAGTAATATGAACTAGAAC+AGG | + | chr6_1:28321874-28321893 | Msa0881280:intron | 25.0% |
| ! | AAGTAATATGAACTAGAACA+GGG | + | chr6_1:28321875-28321894 | Msa0881280:intron | 25.0% |
| ! | AAATAATCACAACAAGACAT+TGG | + | chr6_1:28321910-28321929 | Msa0881280:intron | 25.0% |
| ! | AATTGAGTAAATCATGTAGT+TGG | - | chr6_1:28321941-28321960 | None:intergenic | 25.0% |
| ! | ACTACATGATTTACTCAATT+TGG | + | chr6_1:28321941-28321960 | Msa0881280:intron | 25.0% |
| ! | CTACATGATTTACTCAATTT+GGG | + | chr6_1:28321942-28321961 | Msa0881280:intron | 25.0% |
| ! | ATCTTAAAAAAGTGATTGGT+TGG | - | chr6_1:28322029-28322048 | None:intergenic | 25.0% |
| ! | GCCCAATTAAATAAAACAAA+AGG | + | chr6_1:28322122-28322141 | Msa0881280:intron | 25.0% |
| ! | GAAAGAATGTTATGATAAAG+TGG | - | chr6_1:28322269-28322288 | None:intergenic | 25.0% |
| !!! | AAATTCTAAAATGGTGCAAA+AGG | - | chr6_1:28322365-28322384 | None:intergenic | 25.0% |
| ! | AAAAATTTGATTGGAATGTG+CGG | + | chr6_1:28322558-28322577 | Msa0881280:intron | 25.0% |
| ! | GGGAAAAATGAAAAACTTAA+AGG | - | chr6_1:28322743-28322762 | None:intergenic | 25.0% |
| !! | AAAACTTAAAGGACTTGTTT+GGG | - | chr6_1:28322792-28322811 | None:intergenic | 25.0% |
| !! | AAAAACTTAAAGGACTTGTT+TGG | - | chr6_1:28322793-28322812 | None:intergenic | 25.0% |
| ! | GAAACGATTCAAAAACTTAA+AGG | - | chr6_1:28322803-28322822 | None:intergenic | 25.0% |
| ! | TGTATCACATATCATCTAAA+AGG | + | chr6_1:28322838-28322857 | Msa0881280:intron | 25.0% |
| ! | AATATGAGAAACTCCATAAT+AGG | - | chr6_1:28322883-28322902 | None:intergenic | 25.0% |
| ! | CATCCAATCACATATTATAA+AGG | + | chr6_1:28322903-28322922 | Msa0881280:intron | 25.0% |
| ! | TGACCTTTATAATATGTGAT+TGG | - | chr6_1:28322909-28322928 | None:intergenic | 25.0% |
| ! | ATATTGAAAAACATAAGGGA+AGG | + | chr6_1:28323341-28323360 | Msa0881280:CDS | 25.0% |
| ! | TGGATTTATAGGATTAAAGT+AGG | - | chr6_1:28323432-28323451 | None:intergenic | 25.0% |
| ! | AATCCTATAAATCCAACATT+TGG | + | chr6_1:28323437-28323456 | Msa0881280:CDS | 25.0% |
| !! | AAATGATTTTGTTCAGTCAA+TGG | + | chr6_1:28323472-28323491 | Msa0881280:CDS | 25.0% |
| ATGTGGTATTAGAGTAAGTT+AGG | - | chr6_1:28321318-28321337 | None:intergenic | 30.0% | |
| GAAAAGATTTGTGACTAATG+TGG | - | chr6_1:28321335-28321354 | None:intergenic | 30.0% | |
| ! | AGTAAATCATGTAGTTGGTA+TGG | - | chr6_1:28321936-28321955 | None:intergenic | 30.0% |
| ATTTGGGAAATTGATAGAGA+AGG | + | chr6_1:28321958-28321977 | Msa0881280:intron | 30.0% | |
| TTTGGGAAATTGATAGAGAA+GGG | + | chr6_1:28321959-28321978 | Msa0881280:intron | 30.0% | |
| CTCAATAGAATGGAAAAAGA+AGG | - | chr6_1:28322178-28322197 | None:intergenic | 30.0% | |
| CATCACATTCTTATTACTAG+AGG | + | chr6_1:28322307-28322326 | Msa0881280:intron | 30.0% | |
| TGGTTGTAAATCCAGAAAAA+AGG | - | chr6_1:28322337-28322356 | None:intergenic | 30.0% | |
| ! | CTATACACTTTGCTATCTTT+AGG | - | chr6_1:28322427-28322446 | None:intergenic | 30.0% |
| CTCTTCACAAAAATACTTGT+AGG | - | chr6_1:28322599-28322618 | None:intergenic | 30.0% | |
| !! | GTTTTTCATTTTTCCCAAAG+TGG | + | chr6_1:28322747-28322766 | Msa0881280:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr6_1:28322774-28322793 | None:intergenic | 30.0% |
| AGATCAGTGAACAATTACTA+TGG | - | chr6_1:28323111-28323130 | None:intergenic | 30.0% | |
| !! | AGCAGCTGAATTTTTGTTTA+TGG | - | chr6_1:28323135-28323154 | None:intergenic | 30.0% |
| ! | CTATACGAATTTTTCCCATT+TGG | + | chr6_1:28323197-28323216 | Msa0881280:CDS | 30.0% |
| ! | GGAAATTCAGGTTAATAGTT+GGG | - | chr6_1:28323229-28323248 | None:intergenic | 30.0% |
| ! | AGGAAATTCAGGTTAATAGT+TGG | - | chr6_1:28323230-28323249 | None:intergenic | 30.0% |
| TGTTCAGTCAATGGTAAAAA+TGG | + | chr6_1:28323481-28323500 | Msa0881280:CDS | 30.0% | |
| GTTCAGTCAATGGTAAAAAT+GGG | + | chr6_1:28323482-28323501 | Msa0881280:CDS | 30.0% | |
| ATGGTAAAAATGGGACAAAT+TGG | + | chr6_1:28323491-28323510 | Msa0881280:CDS | 30.0% | |
| !! | TTTTCATGACTGCTTTGTTG+AGG | + | chr6_1:28321019-28321038 | Msa0881280:CDS | 35.0% |
| TGATGTGATAGAAAAAGCCA+AGG | + | chr6_1:28321203-28321222 | Msa0881280:CDS | 35.0% | |
| ! | TTGTGCAGATATTGTTGCTT+TGG | + | chr6_1:28321260-28321279 | Msa0881280:CDS | 35.0% |
| ATCTCTTGCAGATAATATGC+CGG | + | chr6_1:28321505-28321524 | Msa0881280:CDS | 35.0% | |
| TGAATTGAATCATCGACATC+CGG | - | chr6_1:28321527-28321546 | None:intergenic | 35.0% | |
| TGATTCAATTCAGCAACTCA+AGG | + | chr6_1:28321535-28321554 | Msa0881280:CDS | 35.0% | |
| GACATGATACATGTTGATAC+CGG | + | chr6_1:28321679-28321698 | Msa0881280:intron | 35.0% | |
| ATGCAGAGTAAATGAGATCA+TGG | + | chr6_1:28321838-28321857 | Msa0881280:intron | 35.0% | |
| TTGTTTAATGAGCCTGTTAC+TGG | + | chr6_1:28322100-28322119 | Msa0881280:intron | 35.0% | |
| TATTTAATTGGGCCAGTAAC+AGG | - | chr6_1:28322115-28322134 | None:intergenic | 35.0% | |
| ! | CTCGTGCGTTTTATGTAATT+TGG | + | chr6_1:28322201-28322220 | Msa0881280:intron | 35.0% |
| !!! | CTAGAGGATAACCTTTTTTC+TGG | + | chr6_1:28322323-28322342 | Msa0881280:intron | 35.0% |
| AAATGGTGCAAAAGGAAAGT+TGG | - | chr6_1:28322357-28322376 | None:intergenic | 35.0% | |
| GAAACTTAAAGGACCACTTT+GGG | - | chr6_1:28322763-28322782 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | - | chr6_1:28322764-28322783 | None:intergenic | 35.0% | |
| TTGTACGTGAGAACCTATTA+TGG | + | chr6_1:28322867-28322886 | Msa0881280:intron | 35.0% | |
| AATTCAGCTGCTCATACAAT+TGG | + | chr6_1:28323143-28323162 | Msa0881280:intron | 35.0% | |
| TGTTGATATCTCCATCCTTA+GGG | - | chr6_1:28323274-28323293 | None:intergenic | 35.0% | |
| TTGTTGATATCTCCATCCTT+AGG | - | chr6_1:28323275-28323294 | None:intergenic | 35.0% | |
| TATCAACAAACGTTTAGCCA+TGG | + | chr6_1:28323286-28323305 | Msa0881280:CDS | 35.0% | |
| GGTCCAAATGTTGGATTTAT+AGG | - | chr6_1:28323443-28323462 | None:intergenic | 35.0% | |
| TCAAAAGAAGGTCCAAATGT+TGG | - | chr6_1:28323452-28323471 | None:intergenic | 35.0% | |
| TCTAAGAGTCAGCTTCATGT+TGG | + | chr6_1:28320891-28320910 | Msa0881280:CDS | 40.0% | |
| TCTAACAACATCATGGACAG+TGG | - | chr6_1:28320949-28320968 | None:intergenic | 40.0% | |
| CAGCTTCTCTAACAACATCA+TGG | - | chr6_1:28320956-28320975 | None:intergenic | 40.0% | |
| TGTTCTTTCTGACAGAACCA+TGG | + | chr6_1:28320974-28320993 | Msa0881280:CDS | 40.0% | |
| !!! | TGAGTTTTTCAGGGATGTGA+TGG | + | chr6_1:28321111-28321130 | Msa0881280:intron | 40.0% |
| AGATGCTTCTAATTGTGCCT+TGG | - | chr6_1:28321223-28321242 | None:intergenic | 40.0% | |
| !! | CAATTAGAAGCATCTTGTCC+AGG | + | chr6_1:28321228-28321247 | Msa0881280:CDS | 40.0% |
| AGCAAGAGATGCAATTGTCA+TGG | + | chr6_1:28321284-28321303 | Msa0881280:CDS | 40.0% | |
| TGTGGAATGATGTTACATGC+AGG | + | chr6_1:28321424-28321443 | Msa0881280:intron | 40.0% | |
| TGATGTTACATGCAGGCAAA+TGG | + | chr6_1:28321431-28321450 | Msa0881280:intron | 40.0% | |
| CTGCATATCAAGTTCCAACA+GGG | + | chr6_1:28321456-28321475 | Msa0881280:CDS | 40.0% | |
| AAGGCCAAGTTTCTGAACAA+GGG | + | chr6_1:28321554-28321573 | Msa0881280:CDS | 40.0% | |
| AAAGACCTTGTTCTTCTCAG+TGG | + | chr6_1:28321587-28321606 | Msa0881280:intron | 40.0% | |
| AGTGTCTAACATCGACGTAT+AGG | - | chr6_1:28321740-28321759 | None:intergenic | 40.0% | |
| TGAGATCATGGTTGTTGAAG+TGG | + | chr6_1:28321850-28321869 | Msa0881280:intron | 40.0% | |
| CAGGCTCATTAAACAAAGAG+TGG | - | chr6_1:28322096-28322115 | None:intergenic | 40.0% | |
| !!! | GGGTCTCTAGGATTATGTTT+TGG | + | chr6_1:28322150-28322169 | Msa0881280:intron | 40.0% |
| GCACGAGAAACTCAATAGAA+TGG | - | chr6_1:28322188-28322207 | None:intergenic | 40.0% | |
| ! | TCTCATAAAGAAGCATGCTG+TGG | - | chr6_1:28323171-28323190 | None:intergenic | 40.0% |
| TAGTTGGGTCTGATCCAAAT+GGG | - | chr6_1:28323214-28323233 | None:intergenic | 40.0% | |
| ATAGTTGGGTCTGATCCAAA+TGG | - | chr6_1:28323215-28323234 | None:intergenic | 40.0% | |
| AAACGTTTAGCCATGGATGA+AGG | + | chr6_1:28323293-28323312 | Msa0881280:CDS | 40.0% | |
| AACGTTTAGCCATGGATGAA+GGG | + | chr6_1:28323294-28323313 | Msa0881280:CDS | 40.0% | |
| CAGGTTCTGTTGGAAACATT+AGG | + | chr6_1:28323522-28323541 | Msa0881280:CDS | 40.0% | |
| CTCTACTTGAGGACATGTGT+TGG | - | chr6_1:28320925-28320944 | None:intergenic | 45.0% | |
| TATCCTCTAACACCTGCATG+TGG | - | chr6_1:28321183-28321202 | None:intergenic | 45.0% | |
| CCTGTTGGAACTTGATATGC+AGG | - | chr6_1:28321458-28321477 | None:intergenic | 45.0% | |
| CCTGCATATCAAGTTCCAAC+AGG | + | chr6_1:28321455-28321474 | Msa0881280:CDS | 45.0% | |
| AATCCATCTCTTCTCCCTGT+TGG | - | chr6_1:28321473-28321492 | None:intergenic | 45.0% | |
| AACAGGGAGAAGAGATGGAT+TGG | + | chr6_1:28321472-28321491 | Msa0881280:CDS | 45.0% | |
| CAAGGCCAAGTTTCTGAACA+AGG | + | chr6_1:28321553-28321572 | Msa0881280:CDS | 45.0% | |
| GAGACCCTTGTTCAGAAACT+TGG | - | chr6_1:28321561-28321580 | None:intergenic | 45.0% | |
| GTGTACCACTGAGAAGAACA+AGG | - | chr6_1:28321595-28321614 | None:intergenic | 45.0% | |
| CAAAAGGATCTTGGGTCTCT+AGG | + | chr6_1:28322138-28322157 | Msa0881280:intron | 45.0% | |
| !! | TCAGTTCTGGGAGGAAATTC+AGG | - | chr6_1:28323241-28323260 | None:intergenic | 45.0% |
| GGACAAATTGGAGTGAAGAC+AGG | + | chr6_1:28323503-28323522 | Msa0881280:CDS | 45.0% | |
| !! | TTAATTAAATATTATGATAT+AGG | + | chr6_1:28321992-28322011 | Msa0881280:intron | 5.0% |
| ! | TGGACAGTGGACTCTACTTG+AGG | - | chr6_1:28320936-28320955 | None:intergenic | 50.0% |
| TGTGGAGATGCAGTCTTCTC+TGG | - | chr6_1:28321165-28321184 | None:intergenic | 50.0% | |
| AAGACTGCATCTCCACATGC+AGG | + | chr6_1:28321168-28321187 | Msa0881280:CDS | 50.0% | |
| TCTCCACATGCAGGTGTTAG+AGG | + | chr6_1:28321177-28321196 | Msa0881280:CDS | 50.0% | |
| !! | AGAAGCATCTTGTCCAGGAG+TGG | + | chr6_1:28321233-28321252 | Msa0881280:CDS | 50.0% |
| TCTGCACAAGAAACCACTCC+TGG | - | chr6_1:28321249-28321268 | None:intergenic | 50.0% | |
| GTTCCAACAGGGAGAAGAGA+TGG | + | chr6_1:28321467-28321486 | Msa0881280:CDS | 50.0% | |
| TCCTCCCAGAACTGAAAGCA+AGG | + | chr6_1:28323246-28323265 | Msa0881280:CDS | 50.0% | |
| !! | ACCTTGCTTTCAGTTCTGGG+AGG | - | chr6_1:28323250-28323269 | None:intergenic | 50.0% |
| GGCACCTTGCTTTCAGTTCT+GGG | - | chr6_1:28323253-28323272 | None:intergenic | 50.0% | |
| ! | ACTGAAAGCAAGGTGCCCTA+AGG | + | chr6_1:28323256-28323275 | Msa0881280:CDS | 50.0% |
| ! | AAAGCAAGGTGCCCTAAGGA+TGG | + | chr6_1:28323260-28323279 | Msa0881280:CDS | 50.0% |
| CAGATCACTCCCTTCATCCA+TGG | - | chr6_1:28323306-28323325 | None:intergenic | 50.0% | |
| GGAGTGAAGACAGGTTCTGT+TGG | + | chr6_1:28323512-28323531 | Msa0881280:CDS | 50.0% | |
| CCTGAGAAGAACAGCAGCCA+TGG | - | chr6_1:28320994-28321013 | None:intergenic | 55.0% | |
| CCATGGCTGCTGTTCTTCTC+AGG | + | chr6_1:28320991-28321010 | Msa0881280:CDS | 55.0% | |
| GGGCACCTTGCTTTCAGTTC+TGG | - | chr6_1:28323254-28323273 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28320834 | 28323568 | 28320834 | ID=Msa0881280;Name=Msa0881280 |
| chr6_1 | mRNA | 28320834 | 28323568 | 28320834 | ID=Msa0881280-mRNA-1;Parent=Msa0881280;Name=Msa0881280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|312 |
| chr6_1 | exon | 28320834 | 28321040 | 28320834 | ID=Msa0881280-mRNA-1:exon:7116;Parent=Msa0881280-mRNA-1 |
| chr6_1 | exon | 28321123 | 28321305 | 28321123 | ID=Msa0881280-mRNA-1:exon:7117;Parent=Msa0881280-mRNA-1 |
| chr6_1 | exon | 28321446 | 28321575 | 28321446 | ID=Msa0881280-mRNA-1:exon:7118;Parent=Msa0881280-mRNA-1 |
| chr6_1 | exon | 28323150 | 28323568 | 28323150 | ID=Msa0881280-mRNA-1:exon:7119;Parent=Msa0881280-mRNA-1 |
| chr6_1 | CDS | 28320834 | 28321040 | 28320834 | ID=Msa0881280-mRNA-1:cds;Parent=Msa0881280-mRNA-1 |
| chr6_1 | CDS | 28321123 | 28321305 | 28321123 | ID=Msa0881280-mRNA-1:cds;Parent=Msa0881280-mRNA-1 |
| chr6_1 | CDS | 28321446 | 28321575 | 28321446 | ID=Msa0881280-mRNA-1:cds;Parent=Msa0881280-mRNA-1 |
| chr6_1 | CDS | 28323150 | 28323568 | 28323150 | ID=Msa0881280-mRNA-1:cds;Parent=Msa0881280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
