AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343280 MtrunA17_Chr2g0278671 92.182 307 13 1 17 312 17 323 0.0 578
Msa1343280 MtrunA17_Chr4g0063671 48.276 319 148 5 6 312 7 320 2.02e-95 285
Msa1343280 MtrunA17_Chr2g0279041 48.287 321 149 6 5 312 9 325 3.59e-95 284
Msa1343280 MtrunA17_Chr4g0070951 39.634 328 171 7 3 312 11 329 8.07e-72 225
Msa1343280 MtrunA17_Chr5g0402571 39.385 325 173 7 4 312 10 326 1.37e-71 224
Msa1343280 MtrunA17_Chr2g0279061 46.693 257 123 4 68 312 12 266 6.23e-71 220
Msa1343280 MtrunA17_Chr4g0043391 41.994 331 163 11 1 312 4 324 1.71e-70 221
Msa1343280 MtrunA17_Chr5g0402581 39.077 325 174 7 4 312 10 326 1.85e-70 221
Msa1343280 MtrunA17_Chr1g0175561 39.385 325 171 10 8 312 8 326 3.52e-70 221
Msa1343280 MtrunA17_Chr2g0322861 39.252 321 170 7 10 312 73 386 4.05e-70 222
Msa1343280 MtrunA17_Chr4g0038171 41.390 331 165 11 1 312 1 321 5.60e-70 220
Msa1343280 MtrunA17_Chr7g0258811 40.122 329 170 10 3 312 51 371 6.66e-70 221
Msa1343280 MtrunA17_Chr2g0292271 40.000 330 175 8 1 312 6 330 1.07e-68 218
Msa1343280 MtrunA17_Chr2g0292211 39.752 322 171 7 9 312 25 341 1.92e-68 217
Msa1343280 MtrunA17_Chr4g0038151 40.483 331 168 10 1 312 1 321 4.79e-68 215
Msa1343280 MtrunA17_Chr2g0292181 38.138 333 179 8 2 312 12 339 1.75e-67 215
Msa1343280 MtrunA17_Chr2g0292151 39.550 311 165 8 20 312 25 330 3.94e-67 214
Msa1343280 MtrunA17_Chr4g0038161 40.303 330 169 9 1 312 1 320 5.06e-67 212
Msa1343280 MtrunA17_Chr2g0292251 40.514 311 162 8 20 312 24 329 2.37e-66 212
Msa1343280 MtrunA17_Chr1g0157051 35.714 322 185 5 1 308 1 314 6.09e-66 209
Msa1343280 MtrunA17_Chr2g0292111 37.237 333 182 9 2 312 3 330 1.62e-65 209
Msa1343280 MtrunA17_Chr2g0291751 38.941 321 169 9 12 312 17 330 2.27e-65 209
Msa1343280 MtrunA17_Chr2g0292261 40.514 311 162 8 20 312 25 330 8.82e-65 207
Msa1343280 MtrunA17_Chr2g0299691 39.077 325 176 7 6 312 38 358 1.17e-64 207
Msa1343280 MtrunA17_Chr7g0244451 38.871 319 166 8 11 312 10 316 1.83e-64 206
Msa1343280 MtrunA17_Chr7g0254231 39.604 303 156 7 24 312 22 311 3.05e-64 205
Msa1343280 MtrunA17_Chr4g0024121 37.654 324 180 7 6 312 8 326 8.23e-64 204
Msa1343280 MtrunA17_Chr2g0292241 39.228 311 166 7 20 312 25 330 1.15e-63 205
Msa1343280 MtrunA17_Chr4g0068621 38.710 310 166 8 20 312 34 336 1.28e-63 204
Msa1343280 MtrunA17_Chr2g0292091 38.253 332 178 10 1 312 1 325 3.43e-63 203
Msa1343280 MtrunA17_Chr5g0404721 40.196 306 161 10 24 312 30 330 6.79e-63 202
Msa1343280 MtrunA17_Chr7g0244461 36.533 323 176 7 5 312 4 312 2.88e-62 200
Msa1343280 MtrunA17_Chr3g0129051 38.291 316 167 8 10 308 14 318 4.26e-62 199
Msa1343280 MtrunA17_Chr3g0106921 38.650 326 168 9 6 312 8 320 3.61e-61 197
Msa1343280 MtrunA17_Chr5g0432441 39.755 327 166 9 5 312 12 326 3.71e-61 197
Msa1343280 MtrunA17_Chr7g0268501 38.110 328 177 8 1 312 3 320 6.89e-61 196
Msa1343280 MtrunA17_Chr7g0268521 38.110 328 177 8 1 312 3 320 6.89e-61 196
Msa1343280 MtrunA17_Chr6g0460711 37.658 316 178 7 9 312 6 314 8.76e-61 196
Msa1343280 MtrunA17_Chr7g0254201 36.513 304 171 6 22 312 18 312 5.37e-60 194
Msa1343280 MtrunA17_Chr3g0128061 37.963 324 176 10 8 312 9 326 6.25e-60 194
Msa1343280 MtrunA17_Chr4g0013191 39.048 315 163 10 16 312 37 340 6.93e-60 194
Msa1343280 MtrunA17_Chr4g0013171 36.747 332 179 8 1 312 1 321 2.01e-59 192
Msa1343280 MtrunA17_Chr6g0477071 37.086 302 164 8 24 312 54 342 3.52e-59 192
Msa1343280 MtrunA17_Chr5g0438021 36.607 336 178 10 1 312 1 325 3.59e-59 192
Msa1343280 MtrunA17_Chr2g0292291 35.928 334 186 10 2 312 4 332 4.38e-59 193
Msa1343280 MtrunA17_Chr7g0225221 37.152 323 179 7 5 312 7 320 7.80e-59 191
Msa1343280 MtrunA17_Chr8g0372601 37.459 307 172 6 22 312 28 330 8.02e-59 191
Msa1343280 MtrunA17_Chr8g0371381 35.974 303 171 5 24 312 26 319 1.09e-58 191
Msa1343280 MtrunA17_Chr1g0148021 34.242 330 194 6 1 312 4 328 1.22e-58 191
Msa1343280 MtrunA17_Chr1g0204011 34.483 319 186 7 9 312 12 322 1.64e-58 190
Msa1343280 MtrunA17_Chr1g0194151 36.145 332 182 8 6 312 7 333 2.44e-58 190
Msa1343280 MtrunA17_Chr2g0329641 38.907 311 163 8 21 312 33 335 9.47e-58 189
Msa1343280 MtrunA17_Chr2g0296621 37.086 302 167 7 24 312 50 341 1.52e-57 189
Msa1343280 MtrunA17_Chr2g0320071 35.474 327 182 7 1 312 5 317 1.62e-57 187
Msa1343280 MtrunA17_Chr3g0129061 37.658 316 169 9 10 308 14 318 2.20e-57 187
Msa1343280 MtrunA17_Chr2g0292101 36.280 328 182 9 5 312 6 326 2.77e-57 188
Msa1343280 MtrunA17_Chr3g0114451 36.391 327 175 7 8 312 3 318 5.53e-57 186
Msa1343280 MtrunA17_Chr2g0320101 35.366 328 185 7 1 312 1 317 2.63e-56 184
Msa1343280 MtrunA17_Chr2g0320051 36.923 325 175 9 4 312 8 318 2.82e-56 184
Msa1343280 MtrunA17_Chr4g0013181 37.086 302 162 7 28 312 63 353 6.28e-56 184
Msa1343280 MtrunA17_Chr2g0320091 35.562 329 184 8 1 312 1 318 2.31e-55 182
Msa1343280 MtrunA17_Chr5g0405991 35.061 328 185 9 1 312 1 316 3.29e-55 182
Msa1343280 MtrunA17_Chr2g0320061 36.890 328 171 12 4 312 8 318 8.36e-55 181
Msa1343280 MtrunA17_Chr5g0401431 35.780 327 183 9 4 309 6 326 8.91e-55 181
Msa1343280 MtrunA17_Chr4g0076211 36.000 300 170 6 26 312 43 333 1.43e-54 181
Msa1343280 MtrunA17_Chr3g0136751 34.862 327 187 7 2 312 6 322 3.82e-54 179
Msa1343280 MtrunA17_Chr1g0188431 35.185 324 176 9 10 312 17 327 4.01e-54 179
Msa1343280 MtrunA17_Chr2g0316191 34.030 335 170 8 22 309 74 404 1.72e-53 180
Msa1343280 MtrunA17_Chr1g0213061 34.462 325 183 8 6 312 9 321 2.13e-53 177
Msa1343280 MtrunA17_Chr2g0316791 34.132 334 170 9 22 309 74 403 3.42e-53 179
Msa1343280 MtrunA17_Chr1g0197411 36.308 325 181 9 9 312 11 330 3.67e-53 177
Msa1343280 MtrunA17_Chr4g0072091 37.582 306 170 8 23 312 23 323 4.09e-53 176
Msa1343280 MtrunA17_Chr2g0316831 34.030 335 169 9 22 309 110 439 4.52e-53 179
Msa1343280 MtrunA17_Chr1g0194271 34.218 339 186 8 6 312 7 340 5.41e-53 177
Msa1343280 MtrunA17_Chr3g0106901 37.273 330 178 7 1 312 5 323 1.37e-52 175
Msa1343280 MtrunA17_Chr4g0013201 35.294 306 172 7 22 312 44 338 1.61e-52 175
Msa1343280 MtrunA17_Chr7g0224371 35.802 324 178 9 6 312 12 322 3.25e-52 174
Msa1343280 MtrunA17_Chr2g0320031 34.056 323 186 7 6 312 8 319 9.50e-52 173
Msa1343280 MtrunA17_Chr2g0316481 32.934 334 174 8 22 309 74 403 1.08e-51 175
Msa1343280 MtrunA17_Chr3g0129041 36.875 320 174 8 10 312 14 322 1.63e-51 172
Msa1343280 MtrunA17_Chr1g0164891 35.714 308 173 8 25 312 90 392 4.19e-51 173
Msa1343280 MtrunA17_Chr5g0400331 37.304 319 170 9 17 312 20 331 8.51e-51 171
Msa1343280 MtrunA17_Chr4g0013721 36.218 312 175 8 17 312 93 396 1.40e-50 172
Msa1343280 MtrunA17_Chr4g0053871 34.756 328 182 9 5 311 7 323 2.82e-50 169
Msa1343280 MtrunA17_Chr4g0013821 35.275 309 176 9 20 312 24 324 1.16e-48 166
Msa1343280 MtrunA17_Chr4g0046131 35.294 340 181 9 4 309 9 343 1.22e-48 166
Msa1343280 MtrunA17_Chr2g0311251 32.335 334 175 8 22 309 9 337 3.89e-48 164
Msa1343280 MtrunA17_Chr3g0107881 34.848 330 181 10 3 312 9 324 5.60e-48 163
Msa1343280 MtrunA17_Chr1g0155611 36.513 304 168 8 28 312 50 347 6.64e-47 161
Msa1343280 MtrunA17_Chr8g0364291 33.832 334 184 11 5 312 2 324 3.00e-46 159
Msa1343280 MtrunA17_Chr5g0432331 33.750 320 180 10 13 312 45 352 1.06e-45 158
Msa1343280 MtrunA17_Chr5g0421411 35.495 293 151 9 47 312 4 285 3.30e-45 155
Msa1343280 MtrunA17_Chr5g0432351 32.934 334 182 11 4 312 5 321 3.31e-45 156
Msa1343280 MtrunA17_Chr2g0311241 29.412 374 174 7 22 309 58 427 6.08e-45 158
Msa1343280 MtrunA17_Chr5g0432341 33.133 332 180 11 6 312 7 321 2.88e-44 153
Msa1343280 MtrunA17_Chr6g0451571 32.615 325 189 9 9 312 19 334 2.71e-43 151
Msa1343280 MtrunA17_Chr2g0316811 36.325 234 113 6 22 221 48 279 2.14e-42 149
Msa1343280 MtrunA17_Chr4g0075241 32.484 314 176 10 22 312 27 327 6.98e-42 147
Msa1343280 MtrunA17_Chr6g0467251 32.121 330 191 7 5 312 10 328 1.76e-41 147
Msa1343280 MtrunA17_Chr5g0432401 33.654 312 155 11 9 308 11 282 3.34e-41 144
Msa1343280 MtrunA17_Chr1g0181511 31.210 314 180 8 21 312 24 323 4.65e-41 145
Msa1343280 MtrunA17_Chr6g0467161 31.683 303 182 7 24 312 45 336 7.95e-40 142
Msa1343280 MtrunA17_Chr4g0074851 29.607 331 202 7 4 312 7 328 9.58e-40 142
Msa1343280 MtrunA17_Chr5g0413051 31.529 314 187 9 21 312 70 377 7.15e-39 140
Msa1343280 MtrunA17_Chr6g0467121 29.518 332 200 9 3 312 44 363 2.38e-37 137
Msa1343280 MtrunA17_Chr1g0181481 30.255 314 183 7 21 312 24 323 8.53e-37 134
Msa1343280 MtrunA17_Chr1g0181431 30.032 313 183 7 22 312 25 323 2.43e-36 132
Msa1343280 MtrunA17_Chr3g0114491 50.435 115 53 3 18 129 13 126 9.33e-30 110
Msa1343280 MtrunA17_Chr4g0004591 27.273 319 157 7 24 309 77 353 3.00e-29 114
Msa1343280 MtrunA17_Chr2g0292281 35.211 213 112 7 113 312 17 216 4.82e-28 108
Msa1343280 MtrunA17_Chr2g0316141 29.710 276 147 8 70 309 11 275 2.50e-27 107
Msa1343280 MtrunA17_Chr2g0316181 29.710 276 147 8 70 309 11 275 2.50e-27 107
Msa1343280 MtrunA17_Chr6g0468731 61.765 68 25 1 63 130 22 88 1.59e-23 92.4
Msa1343280 MtrunA17_Chr1g0181491 41.964 112 62 2 21 130 9 119 2.71e-21 88.2
Msa1343280 MtrunA17_Chr7g0254181 44.681 94 50 1 84 177 22 113 1.66e-19 83.6
Msa1343280 MtrunA17_Chr3g0114461 29.146 199 117 5 127 312 5 192 1.12e-14 71.2
Msa1343280 MtrunA17_Chr7g0254171 43.678 87 46 2 70 153 4 90 1.61e-14 69.7
Msa1343280 MtrunA17_Chr1g0196191 50.000 74 33 2 57 128 20 91 8.29e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343280 AT4G25980.1 62.893 318 103 3 7 312 12 326 1.34e-140 400
Msa1343280 AT1G77100.1 52.960 321 131 5 5 312 6 319 1.35e-105 311
Msa1343280 AT2G41480.1 46.769 325 159 4 1 312 5 328 1.81e-96 288
Msa1343280 AT5G64120.1 45.574 305 149 4 19 312 30 328 1.35e-87 265
Msa1343280 AT5G39580.1 42.991 321 163 4 4 312 7 319 2.72e-84 257
Msa1343280 AT5G64100.1 43.243 333 159 8 4 312 5 331 1.33e-78 243
Msa1343280 AT5G17820.1 43.260 319 157 8 6 312 7 313 8.21e-77 238
Msa1343280 AT5G17820.2 43.260 319 157 8 6 312 60 366 4.99e-76 237
Msa1343280 AT1G05260.1 41.486 323 170 7 5 312 7 325 1.77e-75 234
Msa1343280 AT5G64110.1 41.975 324 162 7 9 312 13 330 2.78e-75 234
Msa1343280 AT5G15180.1 41.590 327 171 8 1 312 8 329 4.36e-74 231
Msa1343280 AT3G01190.1 41.745 321 168 6 5 312 7 321 3.12e-73 228
Msa1343280 AT4G11290.1 41.538 325 167 7 7 312 6 326 4.26e-72 226
Msa1343280 AT4G25980.2 68.182 154 49 0 20 173 67 220 2.06e-71 223
Msa1343280 AT1G05240.1 40.728 302 158 7 24 309 26 322 3.29e-70 221
Msa1343280 AT1G05250.1 40.728 302 158 7 24 309 26 322 3.29e-70 221
Msa1343280 AT3G21770.1 39.806 309 167 6 16 309 21 325 6.56e-70 220
Msa1343280 AT1G49570.1 42.395 309 154 9 19 308 43 346 1.07e-68 218
Msa1343280 AT4G36430.1 39.441 322 172 9 9 312 14 330 6.75e-66 210
Msa1343280 AT4G26010.1 38.679 318 168 6 8 312 6 309 1.25e-65 209
Msa1343280 AT4G26010.2 38.679 318 168 6 8 312 34 337 1.54e-65 209
Msa1343280 AT2G18150.1 35.714 336 186 8 2 312 6 336 1.31e-64 207
Msa1343280 AT5G06730.1 36.391 327 185 8 4 312 13 334 7.12e-64 206
Msa1343280 AT4G37530.1 39.432 317 164 8 17 312 20 329 1.33e-63 204
Msa1343280 AT1G14550.1 37.576 330 179 7 1 312 1 321 4.45e-63 202
Msa1343280 AT2G18140.1 35.224 335 188 8 2 312 6 335 4.84e-63 203
Msa1343280 AT3G03670.1 37.654 324 176 7 7 312 6 321 7.15e-63 202
Msa1343280 AT3G32980.1 37.576 330 179 9 5 312 10 334 1.34e-62 202
Msa1343280 AT1G14540.1 38.110 328 174 8 1 312 1 315 1.56e-62 201
Msa1343280 AT5G05340.1 39.482 309 159 9 21 312 27 324 1.78e-62 201
Msa1343280 AT3G49960.1 39.403 335 174 11 1 312 1 329 2.49e-62 201
Msa1343280 AT4G08780.1 37.700 313 170 8 20 312 20 327 1.18e-61 199
Msa1343280 AT4G37520.1 38.065 310 168 7 22 312 25 329 1.74e-61 199
Msa1343280 AT1G34510.1 38.125 320 167 8 8 312 6 309 1.91e-61 198
Msa1343280 AT4G30170.1 36.928 306 173 5 22 312 25 325 2.98e-61 198
Msa1343280 AT5G19890.1 36.474 329 183 10 1 312 8 327 3.27e-61 198
Msa1343280 AT5G67400.1 38.507 335 177 10 1 312 1 329 1.22e-60 196
Msa1343280 AT3G49110.1 37.380 313 171 8 20 312 29 336 1.26e-59 194
Msa1343280 AT2G18980.1 35.714 322 186 6 7 312 7 323 2.60e-59 193
Msa1343280 AT4G37520.2 38.065 310 165 8 22 312 25 326 3.46e-59 192
Msa1343280 AT5G58400.1 38.509 322 166 10 6 308 13 321 5.18e-59 192
Msa1343280 AT5G06720.1 35.692 325 186 9 6 312 14 333 5.31e-59 192
Msa1343280 AT5G66390.1 36.977 311 174 7 19 312 28 333 7.70e-59 192
Msa1343280 AT5G22410.1 37.578 322 173 9 7 308 8 321 1.15e-58 191
Msa1343280 AT4G08770.1 36.792 318 176 8 15 312 15 327 1.17e-58 192
Msa1343280 AT5G51890.1 35.987 314 178 8 5 301 7 314 1.67e-58 191
Msa1343280 AT5G42180.1 34.700 317 187 5 6 307 5 316 2.72e-58 190
Msa1343280 AT3G49120.1 36.741 313 173 8 20 312 28 335 3.08e-57 188
Msa1343280 AT5G19880.1 37.117 326 177 8 10 312 9 329 1.17e-56 186
Msa1343280 AT2G38390.1 35.110 319 183 8 13 312 20 333 1.19e-55 184
Msa1343280 AT2G38380.1 34.985 323 186 8 9 312 16 333 3.04e-55 183
Msa1343280 AT3G50990.1 34.940 332 183 9 7 312 17 341 5.23e-55 182
Msa1343280 AT5G14130.1 35.976 328 184 9 1 312 13 330 2.65e-54 180
Msa1343280 AT4G33870.1 32.000 350 182 10 11 309 54 398 3.92e-54 182
Msa1343280 AT5G14130.2 35.976 328 184 9 1 312 54 371 7.79e-54 180
Msa1343280 AT5G58390.1 36.364 319 172 8 9 308 6 312 4.74e-53 176
Msa1343280 AT1G44970.1 37.217 309 171 7 22 312 43 346 8.09e-53 177
Msa1343280 AT4G16270.1 36.601 306 170 8 24 312 50 348 8.42e-53 177
Msa1343280 AT2G43480.1 37.578 322 165 12 15 312 26 335 3.80e-51 172
Msa1343280 AT5G24070.1 34.795 342 186 9 1 312 1 335 9.48e-51 171
Msa1343280 AT1G68850.1 32.945 343 186 13 6 312 1 335 2.29e-50 170
Msa1343280 AT4G31760.1 34.062 320 186 6 10 312 15 326 3.55e-50 169
Msa1343280 AT4G17690.1 36.964 303 163 10 28 312 30 322 3.82e-50 169
Msa1343280 AT5G47000.1 36.336 333 173 11 4 312 13 330 5.32e-50 169
Msa1343280 AT4G33420.1 35.762 302 168 8 24 312 37 325 4.71e-49 166
Msa1343280 AT1G71695.1 34.967 306 172 9 24 312 44 339 1.23e-48 166
Msa1343280 AT2G24800.1 35.065 308 176 7 22 312 29 329 1.26e-48 165
Msa1343280 AT4G33420.2 35.762 302 168 8 24 312 84 372 2.15e-48 166
Msa1343280 AT5G39580.2 48.503 167 83 2 4 170 7 170 4.04e-48 161
Msa1343280 AT2G35380.1 34.615 338 181 9 5 312 8 335 1.18e-47 163
Msa1343280 AT2G34060.1 36.452 310 171 7 23 311 41 345 1.59e-47 163
Msa1343280 AT4G37530.2 38.077 260 138 7 17 255 20 277 7.92e-47 159
Msa1343280 AT3G28200.1 34.824 313 171 10 20 312 17 316 3.42e-46 159
Msa1343280 AT1G30870.1 33.993 303 178 8 24 312 51 345 1.29e-45 158
Msa1343280 AT2G22420.1 31.562 320 195 8 9 312 8 319 8.16e-45 155
Msa1343280 AT5G40150.1 34.385 317 182 7 13 312 21 328 8.86e-45 155
Msa1343280 AT2G39040.1 33.438 317 177 9 21 312 43 350 1.70e-43 152
Msa1343280 AT4G21960.1 31.373 306 184 6 24 312 31 327 4.21e-42 148
Msa1343280 AT1G24110.1 32.154 311 185 6 21 312 19 322 7.23e-42 147
Msa1343280 AT3G17070.1 30.275 327 199 7 4 308 16 335 6.99e-37 135
Msa1343280 AT2G24800.2 41.899 179 97 4 22 194 29 206 1.81e-36 131
Msa1343280 AT2G37130.1 30.032 313 182 9 23 312 29 327 3.86e-33 124
Msa1343280 AT2G37130.2 30.000 310 180 9 26 312 1 296 1.76e-32 122
Msa1343280 AT2G35380.2 31.496 254 139 7 84 312 4 247 3.92e-26 104
Msa1343280 AT3G17070.2 28.897 263 159 7 66 308 18 272 1.54e-22 95.1

Find 58 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCACCTTGCTTTCAGTTC+TGG 0.179644 tig0006342:+7404 None:intergenic
GGTCCAAATGTTGGATTTAT+AGG 0.216242 tig0006342:+7215 None:intergenic
GGCACCTTGCTTTCAGTTCT+GGG 0.266441 tig0006342:+7405 None:intergenic
TCAGTTCTGGGAGGAAATTC+AGG 0.277375 tig0006342:+7417 None:intergenic
TTGTTGATATCTCCATCCTT+AGG 0.338339 tig0006342:+7383 None:intergenic
AATCCTATAAATCCAACATT+TGG 0.339432 tig0006342:-7218 Msa1343280:CDS
TTATTCTTAATCTTAATTGA+TGG 0.347013 tig0006342:-9263 Msa1343280:CDS
CCATGGCTGCTGTTCTTCTC+AGG 0.361244 tig0006342:-9139 Msa1343280:CDS
TGTGGAGATGCAGTCTTCTC+TGG 0.367035 tig0006342:+8968 None:intergenic
TCTCCACATGCAGGTGTTAG+AGG 0.385000 tig0006342:-8953 Msa1343280:CDS
AATTCAGCTGCTCATACAAT+TGG 0.400962 tig0006342:-7512 Msa1343280:intron
AGGAAATTCAGGTTAATAGT+TGG 0.429063 tig0006342:+7428 None:intergenic
TGTTGATATCTCCATCCTTA+GGG 0.431103 tig0006342:+7384 None:intergenic
CAGGTTCTGTTGGAAACATT+AGG 0.432651 tig0006342:-7133 Msa1343280:CDS
GGAAATTCAGGTTAATAGTT+GGG 0.434698 tig0006342:+7429 None:intergenic
TTGTGCAGATATTGTTGCTT+TGG 0.448468 tig0006342:-8870 Msa1343280:CDS
CCTGCATATCAAGTTCCAAC+AGG 0.455143 tig0006342:-8681 Msa1343280:CDS
CCTGTTGGAACTTGATATGC+AGG 0.459129 tig0006342:+8681 None:intergenic
GAGACCCTTGTTCAGAAACT+TGG 0.470684 tig0006342:+8578 None:intergenic
TGATGTTACATGTAGGCAAA+TGG 0.475836 tig0006342:-8705 Msa1343280:intron
ATAGTTGGGTCTGATCCAAA+TGG 0.477620 tig0006342:+7443 None:intergenic
TGGATTTATAGGATTAAAGT+AGG 0.481291 tig0006342:+7226 None:intergenic
AACAGGGAGAAGAGATGGAT+TGG 0.483056 tig0006342:-8664 Msa1343280:CDS
AGATGCTTCTAATTGTGCCT+TGG 0.487334 tig0006342:+8910 None:intergenic
TCAAAAGAAGGTCCAAATGT+TGG 0.498612 tig0006342:+7206 None:intergenic
AAACGTTTAGCCATGGATGA+AGG 0.499351 tig0006342:-7362 Msa1343280:CDS
GGAGTAAAGACAGGTTCTGT+TGG 0.500900 tig0006342:-7143 Msa1343280:CDS
AATCCATCTCTTCTCCCTGT+TGG 0.503118 tig0006342:+8666 None:intergenic
TCTGCACAAGAAACCACTCC+TGG 0.512606 tig0006342:+8884 None:intergenic
CAAGGCCAAGTTTCTGAACA+AGG 0.517501 tig0006342:-8583 Msa1343280:CDS
ATCTCTTGCAGATAATATGC+CGG 0.534359 tig0006342:-8631 Msa1343280:CDS
CAGATCACTCCCTTCATCCA+TGG 0.535133 tig0006342:+7352 None:intergenic
TGAATTGAATCATCAACATC+CGG 0.542004 tig0006342:+8612 None:intergenic
TCTAAGAGTCAGCTTCATGT+TGG 0.543325 tig0006342:-9239 Msa1343280:CDS
CCTGAGAAGAACAGCAGCCA+TGG 0.549117 tig0006342:+9139 None:intergenic
TAGTTGGGTCTGATCCAAAT+GGG 0.549334 tig0006342:+7444 None:intergenic
GTTCCAACAGGGAGAAGAGA+TGG 0.549752 tig0006342:-8669 Msa1343280:CDS
CAATTAGAAGCATCTTGTCC+AGG 0.557883 tig0006342:-8902 Msa1343280:CDS
CAGCTTCTCTAACAACATCA+TGG 0.559846 tig0006342:+9177 None:intergenic
GGACAAATTGGAGTAAAGAC+AGG 0.565783 tig0006342:-7152 Msa1343280:CDS
AAAGCAAGGTGCCCTAAGGA+TGG 0.570656 tig0006342:-7395 Msa1343280:CDS
TCCTCCCAGAACTGAAAGCA+AGG 0.572671 tig0006342:-7409 Msa1343280:CDS
AACGTTTAGCCATGGATGAA+GGG 0.576082 tig0006342:-7361 Msa1343280:CDS
ACTGAAAGCAAGGTGCCCTA+AGG 0.579558 tig0006342:-7399 Msa1343280:CDS
AGAAGCATCTTGTCCAGGAG+TGG 0.580324 tig0006342:-8897 Msa1343280:CDS
AAGACTGCATCTCCACATGC+AGG 0.590000 tig0006342:-8962 Msa1343280:CDS
TATCAACAAACGTTTAGCCA+TGG 0.597225 tig0006342:-7369 Msa1343280:CDS
AGCAAGAGATGCAATTGTCA+TGG 0.601325 tig0006342:-8846 Msa1343280:intron
TGATTCAATTCAGCAACTCA+AGG 0.601761 tig0006342:-8601 Msa1343280:CDS
CTCTACTTGAGGACATGTGT+TGG 0.603991 tig0006342:+9208 None:intergenic
TCTCATAAAGAAGCATGCTG+TGG 0.627216 tig0006342:+7487 None:intergenic
TATCCTCTAACACCTGCATG+TGG 0.631759 tig0006342:+8950 None:intergenic
TGTTCTTTCTGACAGAACCA+TGG 0.637868 tig0006342:-9156 Msa1343280:CDS
ACCTTGCTTTCAGTTCTGGG+AGG 0.637941 tig0006342:+7408 None:intergenic
TGGACAGTGGACTCTACTTG+AGG 0.644794 tig0006342:+9197 None:intergenic
TCTAACAACATCATGGACAG+TGG 0.665227 tig0006342:+9184 None:intergenic
CTGCATATCAAGTTCCAACA+GGG 0.673250 tig0006342:-8680 Msa1343280:CDS
AAGGCCAAGTTTCTGAACAA+GGG 0.675709 tig0006342:-8582 Msa1343280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCTTAATCTTAATTGA+TGG - tig0006342:7142-7161 Msa1343280:CDS 15.0%
!!! TCCTTTTGTTTTATTTAATT+GGG + tig0006342:8386-8405 None:intergenic 15.0%
!!! ATCCTTTTGTTTTATTTAAT+TGG + tig0006342:8387-8406 None:intergenic 15.0%
!! AAAGAATGTTATGATAAAAT+AGG + tig0006342:8528-8547 None:intergenic 15.0%
!! TTATTCTTAATCTTAATTGA+TGG - tig0006342:7142-7161 Msa1343280:CDS 15.0%
!!! TCCTTTTGTTTTATTTAATT+GGG + tig0006342:8386-8405 None:intergenic 15.0%
!!! ATCCTTTTGTTTTATTTAAT+TGG + tig0006342:8387-8406 None:intergenic 15.0%
!! AAAGAATGTTATGATAAAAT+AGG + tig0006342:8528-8547 None:intergenic 15.0%
!! CAAAATCTTAAAAAAGTGAT+TGG + tig0006342:8293-8312 None:intergenic 20.0%
!!! TAAGATTTTGTCAATTTTTC+AGG - tig0006342:8303-8322 Msa1343280:intron 20.0%
!! TAAATAAAACAAAAGGATCT+TGG - tig0006342:8389-8408 Msa1343280:intron 20.0%
!! AAATAAAACAAAAGGATCTT+GGG - tig0006342:8390-8409 Msa1343280:intron 20.0%
!!! TTTGGCTTATAAAATTCAAA+CGG - tig0006342:8479-8498 Msa1343280:intron 20.0%
!!! AAGAGAACAAAATTCTAAAA+TGG + tig0006342:8634-8653 None:intergenic 20.0%
!! ATATCAATTAAACTCTTGTA+CGG - tig0006342:8746-8765 Msa1343280:intron 20.0%
!! AGAGTATATTGAAAAACATA+AGG - tig0006342:9086-9105 Msa1343280:intron 20.0%
!! GAGTATATTGAAAAACATAA+GGG - tig0006342:9087-9106 Msa1343280:intron 20.0%
!!! ACAAAATCATTTTCAAAAGA+AGG + tig0006342:9214-9233 None:intergenic 20.0%
!! CAAAATCTTAAAAAAGTGAT+TGG + tig0006342:8293-8312 None:intergenic 20.0%
!!! TAAGATTTTGTCAATTTTTC+AGG - tig0006342:8303-8322 Msa1343280:intron 20.0%
!! TAAATAAAACAAAAGGATCT+TGG - tig0006342:8389-8408 Msa1343280:intron 20.0%
!! AAATAAAACAAAAGGATCTT+GGG - tig0006342:8390-8409 Msa1343280:intron 20.0%
!!! TTTGGCTTATAAAATTCAAA+CGG - tig0006342:8479-8498 Msa1343280:intron 20.0%
!!! AAGAGAACAAAATTCTAAAA+TGG + tig0006342:8634-8653 None:intergenic 20.0%
!! ATATCAATTAAACTCTTGTA+CGG - tig0006342:8746-8765 Msa1343280:intron 20.0%
!! AGAGTATATTGAAAAACATA+AGG - tig0006342:9086-9105 Msa1343280:intron 20.0%
!! GAGTATATTGAAAAACATAA+GGG - tig0006342:9087-9106 Msa1343280:intron 20.0%
!!! ACAAAATCATTTTCAAAAGA+AGG + tig0006342:9214-9233 None:intergenic 20.0%
! TTGAGGTCTTTCTATATATA+TGG - tig0006342:7311-7330 Msa1343280:CDS 25.0%
!!! TGATTTTGATTGAGTTTTTC+AGG - tig0006342:7376-7395 Msa1343280:CDS 25.0%
!!! GATTTTGATTGAGTTTTTCA+GGG - tig0006342:7377-7396 Msa1343280:CDS 25.0%
! ATTAGAGTAAGTTAGGTATT+AGG + tig0006342:7586-7605 None:intergenic 25.0%
! ACACTTATTGAATCATAAAC+AGG + tig0006342:7676-7695 None:intergenic 25.0%
! TGTTTATGATTCAATAAGTG+TGG - tig0006342:7675-7694 Msa1343280:intron 25.0%
! AAAGTAATATGAACTAGAAC+AGG - tig0006342:8134-8153 Msa1343280:intron 25.0%
! AAATAATCACAACAAGACAT+TGG - tig0006342:8170-8189 Msa1343280:intron 25.0%
! AATCAAGTAAATCATGTAGT+TGG + tig0006342:8201-8220 None:intergenic 25.0%
! ACTACATGATTTACTTGATT+TGG - tig0006342:8201-8220 Msa1343280:intron 25.0%
! CTACATGATTTACTTGATTT+GGG - tig0006342:8202-8221 Msa1343280:intron 25.0%
! ATCTTAAAAAAGTGATTGGT+TGG + tig0006342:8289-8308 None:intergenic 25.0%
! GCCCAATTAAATAAAACAAA+AGG - tig0006342:8382-8401 Msa1343280:intron 25.0%
! CTCAATAGAATGAAAAAAGA+AGG + tig0006342:8438-8457 None:intergenic 25.0%
!!! AAATTCTAAAATGGTGCAAA+AGG + tig0006342:8625-8644 None:intergenic 25.0%
! CTCAACATATTATATCAGAA+AGG - tig0006342:8654-8673 Msa1343280:CDS 25.0%
! ATATTGAAAAACATAAGGGA+AGG - tig0006342:9091-9110 Msa1343280:intron 25.0%
! TGGATTTATAGGATTAAAGT+AGG + tig0006342:9182-9201 None:intergenic 25.0%
! AATCCTATAAATCCAACATT+TGG - tig0006342:9187-9206 Msa1343280:CDS 25.0%
!! AAATGATTTTGTTCAGTCAA+TGG - tig0006342:9222-9241 Msa1343280:CDS 25.0%
! TTGAGGTCTTTCTATATATA+TGG - tig0006342:7311-7330 Msa1343280:CDS 25.0%
!!! TGATTTTGATTGAGTTTTTC+AGG - tig0006342:7376-7395 Msa1343280:CDS 25.0%
!!! GATTTTGATTGAGTTTTTCA+GGG - tig0006342:7377-7396 Msa1343280:CDS 25.0%
! ATTAGAGTAAGTTAGGTATT+AGG + tig0006342:7586-7605 None:intergenic 25.0%
! ACACTTATTGAATCATAAAC+AGG + tig0006342:7676-7695 None:intergenic 25.0%
! TGTTTATGATTCAATAAGTG+TGG - tig0006342:7675-7694 Msa1343280:intron 25.0%
! AAAGTAATATGAACTAGAAC+AGG - tig0006342:8134-8153 Msa1343280:intron 25.0%
! AAATAATCACAACAAGACAT+TGG - tig0006342:8170-8189 Msa1343280:intron 25.0%
! AATCAAGTAAATCATGTAGT+TGG + tig0006342:8201-8220 None:intergenic 25.0%
! ACTACATGATTTACTTGATT+TGG - tig0006342:8201-8220 Msa1343280:intron 25.0%
! CTACATGATTTACTTGATTT+GGG - tig0006342:8202-8221 Msa1343280:intron 25.0%
! ATCTTAAAAAAGTGATTGGT+TGG + tig0006342:8289-8308 None:intergenic 25.0%
! GCCCAATTAAATAAAACAAA+AGG - tig0006342:8382-8401 Msa1343280:intron 25.0%
! CTCAATAGAATGAAAAAAGA+AGG + tig0006342:8438-8457 None:intergenic 25.0%
!!! AAATTCTAAAATGGTGCAAA+AGG + tig0006342:8625-8644 None:intergenic 25.0%
! CTCAACATATTATATCAGAA+AGG - tig0006342:8654-8673 Msa1343280:CDS 25.0%
! ATATTGAAAAACATAAGGGA+AGG - tig0006342:9091-9110 Msa1343280:intron 25.0%
! TGGATTTATAGGATTAAAGT+AGG + tig0006342:9182-9201 None:intergenic 25.0%
! AATCCTATAAATCCAACATT+TGG - tig0006342:9187-9206 Msa1343280:CDS 25.0%
!! AAATGATTTTGTTCAGTCAA+TGG - tig0006342:9222-9241 Msa1343280:CDS 25.0%
ATGTGGTATTAGAGTAAGTT+AGG + tig0006342:7593-7612 None:intergenic 30.0%
GAAAAGATTTGTGACTAATG+TGG + tig0006342:7610-7629 None:intergenic 30.0%
TGAATTGAATCATCAACATC+CGG + tig0006342:7796-7815 None:intergenic 30.0%
AAACAGACATTTCTGATTGA+AGG + tig0006342:8047-8066 None:intergenic 30.0%
! AGTAAATCATGTAGTTGGTA+TGG + tig0006342:8196-8215 None:intergenic 30.0%
ATTTGGGAAATTGATAGAGA+AGG - tig0006342:8218-8237 Msa1343280:intron 30.0%
TTTGGGAAATTGATAGAGAA+GGG - tig0006342:8219-8238 Msa1343280:intron 30.0%
CATCACATTCTTATTACTAG+AGG - tig0006342:8567-8586 Msa1343280:intron 30.0%
TGGTTGTAAATCCAGAAAAA+AGG + tig0006342:8597-8616 None:intergenic 30.0%
AGATCAGTGAACAATTACTA+TGG + tig0006342:8861-8880 None:intergenic 30.0%
!! AGCAGCTGAATTTTTGTTTA+TGG + tig0006342:8885-8904 None:intergenic 30.0%
! CTATACGAATTTTTCCCATT+TGG - tig0006342:8947-8966 Msa1343280:CDS 30.0%
! GGAAATTCAGGTTAATAGTT+GGG + tig0006342:8979-8998 None:intergenic 30.0%
! AGGAAATTCAGGTTAATAGT+TGG + tig0006342:8980-8999 None:intergenic 30.0%
TGTTCAGTCAATGGTAAAAA+TGG - tig0006342:9231-9250 Msa1343280:CDS 30.0%
GTTCAGTCAATGGTAAAAAT+GGG - tig0006342:9232-9251 Msa1343280:CDS 30.0%
ATGGTAAAAATGGGACAAAT+TGG - tig0006342:9241-9260 Msa1343280:CDS 30.0%
ATGTGGTATTAGAGTAAGTT+AGG + tig0006342:7593-7612 None:intergenic 30.0%
GAAAAGATTTGTGACTAATG+TGG + tig0006342:7610-7629 None:intergenic 30.0%
TGAATTGAATCATCAACATC+CGG + tig0006342:7796-7815 None:intergenic 30.0%
AAACAGACATTTCTGATTGA+AGG + tig0006342:8047-8066 None:intergenic 30.0%
! AGTAAATCATGTAGTTGGTA+TGG + tig0006342:8196-8215 None:intergenic 30.0%
ATTTGGGAAATTGATAGAGA+AGG - tig0006342:8218-8237 Msa1343280:intron 30.0%
TTTGGGAAATTGATAGAGAA+GGG - tig0006342:8219-8238 Msa1343280:intron 30.0%
CATCACATTCTTATTACTAG+AGG - tig0006342:8567-8586 Msa1343280:intron 30.0%
TGGTTGTAAATCCAGAAAAA+AGG + tig0006342:8597-8616 None:intergenic 30.0%
AGATCAGTGAACAATTACTA+TGG + tig0006342:8861-8880 None:intergenic 30.0%
!! AGCAGCTGAATTTTTGTTTA+TGG + tig0006342:8885-8904 None:intergenic 30.0%
! CTATACGAATTTTTCCCATT+TGG - tig0006342:8947-8966 Msa1343280:CDS 30.0%
! GGAAATTCAGGTTAATAGTT+GGG + tig0006342:8979-8998 None:intergenic 30.0%
! AGGAAATTCAGGTTAATAGT+TGG + tig0006342:8980-8999 None:intergenic 30.0%
TGTTCAGTCAATGGTAAAAA+TGG - tig0006342:9231-9250 Msa1343280:CDS 30.0%
GTTCAGTCAATGGTAAAAAT+GGG - tig0006342:9232-9251 Msa1343280:CDS 30.0%
ATGGTAAAAATGGGACAAAT+TGG - tig0006342:9241-9260 Msa1343280:CDS 30.0%
!! TTTTCATGACTGCTTTGTTG+AGG - tig0006342:7294-7313 Msa1343280:CDS 35.0%
TGATGTGATAGAAAAAGCCA+AGG - tig0006342:7478-7497 Msa1343280:CDS 35.0%
! TTGTGCAGATATTGTTGCTT+TGG - tig0006342:7535-7554 Msa1343280:intron 35.0%
TGTGGAATGATGTTACATGT+AGG - tig0006342:7693-7712 Msa1343280:intron 35.0%
TGATGTTACATGTAGGCAAA+TGG - tig0006342:7700-7719 Msa1343280:intron 35.0%
ATCTCTTGCAGATAATATGC+CGG - tig0006342:7774-7793 Msa1343280:intron 35.0%
TGATTCAATTCAGCAACTCA+AGG - tig0006342:7804-7823 Msa1343280:intron 35.0%
! ATTGAAGGTGTATTTCGTGT+CGG + tig0006342:8032-8051 None:intergenic 35.0%
ATGCAGAGTAAATGAGATCA+TGG - tig0006342:8098-8117 Msa1343280:intron 35.0%
TTGTTTAATGAGCCTGTTAC+TGG - tig0006342:8360-8379 Msa1343280:intron 35.0%
TATTTAATTGGGCCAGTAAC+AGG + tig0006342:8375-8394 None:intergenic 35.0%
!!! CTAGAGGATAACCTTTTTTC+TGG - tig0006342:8583-8602 Msa1343280:CDS 35.0%
AAATGGTGCAAAAGGAAAGT+TGG + tig0006342:8617-8636 None:intergenic 35.0%
AATTCAGCTGCTCATACAAT+TGG - tig0006342:8893-8912 Msa1343280:CDS 35.0%
TGTTGATATCTCCATCCTTA+GGG + tig0006342:9024-9043 None:intergenic 35.0%
TTGTTGATATCTCCATCCTT+AGG + tig0006342:9025-9044 None:intergenic 35.0%
TATCAACAAACGTTTAGCCA+TGG - tig0006342:9036-9055 Msa1343280:intron 35.0%
GGTCCAAATGTTGGATTTAT+AGG + tig0006342:9193-9212 None:intergenic 35.0%
TCAAAAGAAGGTCCAAATGT+TGG + tig0006342:9202-9221 None:intergenic 35.0%
!! TTTTCATGACTGCTTTGTTG+AGG - tig0006342:7294-7313 Msa1343280:CDS 35.0%
TGATGTGATAGAAAAAGCCA+AGG - tig0006342:7478-7497 Msa1343280:CDS 35.0%
! TTGTGCAGATATTGTTGCTT+TGG - tig0006342:7535-7554 Msa1343280:intron 35.0%
TGTGGAATGATGTTACATGT+AGG - tig0006342:7693-7712 Msa1343280:intron 35.0%
TGATGTTACATGTAGGCAAA+TGG - tig0006342:7700-7719 Msa1343280:intron 35.0%
ATCTCTTGCAGATAATATGC+CGG - tig0006342:7774-7793 Msa1343280:intron 35.0%
TGATTCAATTCAGCAACTCA+AGG - tig0006342:7804-7823 Msa1343280:intron 35.0%
! ATTGAAGGTGTATTTCGTGT+CGG + tig0006342:8032-8051 None:intergenic 35.0%
ATGCAGAGTAAATGAGATCA+TGG - tig0006342:8098-8117 Msa1343280:intron 35.0%
TTGTTTAATGAGCCTGTTAC+TGG - tig0006342:8360-8379 Msa1343280:intron 35.0%
TATTTAATTGGGCCAGTAAC+AGG + tig0006342:8375-8394 None:intergenic 35.0%
!!! CTAGAGGATAACCTTTTTTC+TGG - tig0006342:8583-8602 Msa1343280:CDS 35.0%
AAATGGTGCAAAAGGAAAGT+TGG + tig0006342:8617-8636 None:intergenic 35.0%
AATTCAGCTGCTCATACAAT+TGG - tig0006342:8893-8912 Msa1343280:CDS 35.0%
TGTTGATATCTCCATCCTTA+GGG + tig0006342:9024-9043 None:intergenic 35.0%
TTGTTGATATCTCCATCCTT+AGG + tig0006342:9025-9044 None:intergenic 35.0%
TATCAACAAACGTTTAGCCA+TGG - tig0006342:9036-9055 Msa1343280:intron 35.0%
GGTCCAAATGTTGGATTTAT+AGG + tig0006342:9193-9212 None:intergenic 35.0%
TCAAAAGAAGGTCCAAATGT+TGG + tig0006342:9202-9221 None:intergenic 35.0%
TCTAAGAGTCAGCTTCATGT+TGG - tig0006342:7166-7185 Msa1343280:CDS 40.0%
TCTAACAACATCATGGACAG+TGG + tig0006342:7224-7243 None:intergenic 40.0%
CAGCTTCTCTAACAACATCA+TGG + tig0006342:7231-7250 None:intergenic 40.0%
TGTTCTTTCTGACAGAACCA+TGG - tig0006342:7249-7268 Msa1343280:CDS 40.0%
!!! TGAGTTTTTCAGGGATGTGA+TGG - tig0006342:7386-7405 Msa1343280:CDS 40.0%
AGATGCTTCTAATTGTGCCT+TGG + tig0006342:7498-7517 None:intergenic 40.0%
!! CAATTAGAAGCATCTTGTCC+AGG - tig0006342:7503-7522 Msa1343280:CDS 40.0%
AGCAAGAGATGCAATTGTCA+TGG - tig0006342:7559-7578 Msa1343280:intron 40.0%
CTGCATATCAAGTTCCAACA+GGG - tig0006342:7725-7744 Msa1343280:intron 40.0%
AAGGCCAAGTTTCTGAACAA+GGG - tig0006342:7823-7842 Msa1343280:intron 40.0%
AAAGACCTTGTTCTTCTCAG+TGG - tig0006342:7856-7875 Msa1343280:intron 40.0%
TGAGATCATGGTTGTTGAAG+TGG - tig0006342:8110-8129 Msa1343280:intron 40.0%
CAGGCTCATTAAACAAAGAG+TGG + tig0006342:8356-8375 None:intergenic 40.0%
!!! GGGTCTCTAGGATTATGTTT+TGG - tig0006342:8410-8429 Msa1343280:intron 40.0%
! CTCGCGCGTTTTATGTAATT+TGG - tig0006342:8461-8480 Msa1343280:intron 40.0%
! TCTCATAAAGAAGCATGCTG+TGG + tig0006342:8921-8940 None:intergenic 40.0%
TAGTTGGGTCTGATCCAAAT+GGG + tig0006342:8964-8983 None:intergenic 40.0%
ATAGTTGGGTCTGATCCAAA+TGG + tig0006342:8965-8984 None:intergenic 40.0%
AAACGTTTAGCCATGGATGA+AGG - tig0006342:9043-9062 Msa1343280:intron 40.0%
AACGTTTAGCCATGGATGAA+GGG - tig0006342:9044-9063 Msa1343280:intron 40.0%
GGACAAATTGGAGTAAAGAC+AGG - tig0006342:9253-9272 Msa1343280:CDS 40.0%
CAGGTTCTGTTGGAAACATT+AGG - tig0006342:9272-9291 Msa1343280:CDS 40.0%
TCTAAGAGTCAGCTTCATGT+TGG - tig0006342:7166-7185 Msa1343280:CDS 40.0%
TCTAACAACATCATGGACAG+TGG + tig0006342:7224-7243 None:intergenic 40.0%
CAGCTTCTCTAACAACATCA+TGG + tig0006342:7231-7250 None:intergenic 40.0%
TGTTCTTTCTGACAGAACCA+TGG - tig0006342:7249-7268 Msa1343280:CDS 40.0%
!!! TGAGTTTTTCAGGGATGTGA+TGG - tig0006342:7386-7405 Msa1343280:CDS 40.0%
AGATGCTTCTAATTGTGCCT+TGG + tig0006342:7498-7517 None:intergenic 40.0%
!! CAATTAGAAGCATCTTGTCC+AGG - tig0006342:7503-7522 Msa1343280:CDS 40.0%
AGCAAGAGATGCAATTGTCA+TGG - tig0006342:7559-7578 Msa1343280:intron 40.0%
CTGCATATCAAGTTCCAACA+GGG - tig0006342:7725-7744 Msa1343280:intron 40.0%
AAGGCCAAGTTTCTGAACAA+GGG - tig0006342:7823-7842 Msa1343280:intron 40.0%
AAAGACCTTGTTCTTCTCAG+TGG - tig0006342:7856-7875 Msa1343280:intron 40.0%
TGAGATCATGGTTGTTGAAG+TGG - tig0006342:8110-8129 Msa1343280:intron 40.0%
CAGGCTCATTAAACAAAGAG+TGG + tig0006342:8356-8375 None:intergenic 40.0%
!!! GGGTCTCTAGGATTATGTTT+TGG - tig0006342:8410-8429 Msa1343280:intron 40.0%
! CTCGCGCGTTTTATGTAATT+TGG - tig0006342:8461-8480 Msa1343280:intron 40.0%
! TCTCATAAAGAAGCATGCTG+TGG + tig0006342:8921-8940 None:intergenic 40.0%
TAGTTGGGTCTGATCCAAAT+GGG + tig0006342:8964-8983 None:intergenic 40.0%
ATAGTTGGGTCTGATCCAAA+TGG + tig0006342:8965-8984 None:intergenic 40.0%
AAACGTTTAGCCATGGATGA+AGG - tig0006342:9043-9062 Msa1343280:intron 40.0%
AACGTTTAGCCATGGATGAA+GGG - tig0006342:9044-9063 Msa1343280:intron 40.0%
GGACAAATTGGAGTAAAGAC+AGG - tig0006342:9253-9272 Msa1343280:CDS 40.0%
CAGGTTCTGTTGGAAACATT+AGG - tig0006342:9272-9291 Msa1343280:CDS 40.0%
CTCTACTTGAGGACATGTGT+TGG + tig0006342:7200-7219 None:intergenic 45.0%
TATCCTCTAACACCTGCATG+TGG + tig0006342:7458-7477 None:intergenic 45.0%
CCTGTTGGAACTTGATATGC+AGG + tig0006342:7727-7746 None:intergenic 45.0%
CCTGCATATCAAGTTCCAAC+AGG - tig0006342:7724-7743 Msa1343280:intron 45.0%
AATCCATCTCTTCTCCCTGT+TGG + tig0006342:7742-7761 None:intergenic 45.0%
AACAGGGAGAAGAGATGGAT+TGG - tig0006342:7741-7760 Msa1343280:intron 45.0%
CAAGGCCAAGTTTCTGAACA+AGG - tig0006342:7822-7841 Msa1343280:intron 45.0%
GAGACCCTTGTTCAGAAACT+TGG + tig0006342:7830-7849 None:intergenic 45.0%
GTGTACCACTGAGAAGAACA+AGG + tig0006342:7864-7883 None:intergenic 45.0%
GACAAGATACACGTCGATAC+TGG - tig0006342:7939-7958 Msa1343280:intron 45.0%
AATGTCTGTTTCAGTGCGTC+TGG - tig0006342:8056-8075 Msa1343280:intron 45.0%
CAAAAGGATCTTGGGTCTCT+AGG - tig0006342:8398-8417 Msa1343280:intron 45.0%
!! TCAGTTCTGGGAGGAAATTC+AGG + tig0006342:8991-9010 None:intergenic 45.0%
GGAGTAAAGACAGGTTCTGT+TGG - tig0006342:9262-9281 Msa1343280:CDS 45.0%
CTCTACTTGAGGACATGTGT+TGG + tig0006342:7200-7219 None:intergenic 45.0%
TATCCTCTAACACCTGCATG+TGG + tig0006342:7458-7477 None:intergenic 45.0%
CCTGTTGGAACTTGATATGC+AGG + tig0006342:7727-7746 None:intergenic 45.0%
CCTGCATATCAAGTTCCAAC+AGG - tig0006342:7724-7743 Msa1343280:intron 45.0%
AATCCATCTCTTCTCCCTGT+TGG + tig0006342:7742-7761 None:intergenic 45.0%
AACAGGGAGAAGAGATGGAT+TGG - tig0006342:7741-7760 Msa1343280:intron 45.0%
CAAGGCCAAGTTTCTGAACA+AGG - tig0006342:7822-7841 Msa1343280:intron 45.0%
GAGACCCTTGTTCAGAAACT+TGG + tig0006342:7830-7849 None:intergenic 45.0%
GTGTACCACTGAGAAGAACA+AGG + tig0006342:7864-7883 None:intergenic 45.0%
GACAAGATACACGTCGATAC+TGG - tig0006342:7939-7958 Msa1343280:intron 45.0%
AATGTCTGTTTCAGTGCGTC+TGG - tig0006342:8056-8075 Msa1343280:intron 45.0%
CAAAAGGATCTTGGGTCTCT+AGG - tig0006342:8398-8417 Msa1343280:intron 45.0%
!! TCAGTTCTGGGAGGAAATTC+AGG + tig0006342:8991-9010 None:intergenic 45.0%
GGAGTAAAGACAGGTTCTGT+TGG - tig0006342:9262-9281 Msa1343280:CDS 45.0%
!! TTAATTAAATATTATGATAT+AGG - tig0006342:8252-8271 Msa1343280:intron 5.0%
!!! TATTGTTTTTTTTTTTTTTT+TGG - tig0006342:8805-8824 Msa1343280:intron 5.0%
!! TTAATTAAATATTATGATAT+AGG - tig0006342:8252-8271 Msa1343280:intron 5.0%
!!! TATTGTTTTTTTTTTTTTTT+TGG - tig0006342:8805-8824 Msa1343280:intron 5.0%
! TGGACAGTGGACTCTACTTG+AGG + tig0006342:7211-7230 None:intergenic 50.0%
TGTGGAGATGCAGTCTTCTC+TGG + tig0006342:7440-7459 None:intergenic 50.0%
AAGACTGCATCTCCACATGC+AGG - tig0006342:7443-7462 Msa1343280:CDS 50.0%
TCTCCACATGCAGGTGTTAG+AGG - tig0006342:7452-7471 Msa1343280:CDS 50.0%
!! AGAAGCATCTTGTCCAGGAG+TGG - tig0006342:7508-7527 Msa1343280:CDS 50.0%
TCTGCACAAGAAACCACTCC+TGG + tig0006342:7524-7543 None:intergenic 50.0%
GTTCCAACAGGGAGAAGAGA+TGG - tig0006342:7736-7755 Msa1343280:intron 50.0%
TCCTCCCAGAACTGAAAGCA+AGG - tig0006342:8996-9015 Msa1343280:CDS 50.0%
!! ACCTTGCTTTCAGTTCTGGG+AGG + tig0006342:9000-9019 None:intergenic 50.0%
GGCACCTTGCTTTCAGTTCT+GGG + tig0006342:9003-9022 None:intergenic 50.0%
! ACTGAAAGCAAGGTGCCCTA+AGG - tig0006342:9006-9025 Msa1343280:CDS 50.0%
! AAAGCAAGGTGCCCTAAGGA+TGG - tig0006342:9010-9029 Msa1343280:CDS 50.0%
CAGATCACTCCCTTCATCCA+TGG + tig0006342:9056-9075 None:intergenic 50.0%
! TGGACAGTGGACTCTACTTG+AGG + tig0006342:7211-7230 None:intergenic 50.0%
TGTGGAGATGCAGTCTTCTC+TGG + tig0006342:7440-7459 None:intergenic 50.0%
AAGACTGCATCTCCACATGC+AGG - tig0006342:7443-7462 Msa1343280:CDS 50.0%
TCTCCACATGCAGGTGTTAG+AGG - tig0006342:7452-7471 Msa1343280:CDS 50.0%
!! AGAAGCATCTTGTCCAGGAG+TGG - tig0006342:7508-7527 Msa1343280:CDS 50.0%
TCTGCACAAGAAACCACTCC+TGG + tig0006342:7524-7543 None:intergenic 50.0%
GTTCCAACAGGGAGAAGAGA+TGG - tig0006342:7736-7755 Msa1343280:intron 50.0%
TCCTCCCAGAACTGAAAGCA+AGG - tig0006342:8996-9015 Msa1343280:CDS 50.0%
!! ACCTTGCTTTCAGTTCTGGG+AGG + tig0006342:9000-9019 None:intergenic 50.0%
GGCACCTTGCTTTCAGTTCT+GGG + tig0006342:9003-9022 None:intergenic 50.0%
! ACTGAAAGCAAGGTGCCCTA+AGG - tig0006342:9006-9025 Msa1343280:CDS 50.0%
! AAAGCAAGGTGCCCTAAGGA+TGG - tig0006342:9010-9029 Msa1343280:CDS 50.0%
CAGATCACTCCCTTCATCCA+TGG + tig0006342:9056-9075 None:intergenic 50.0%
CCTGAGAAGAACAGCAGCCA+TGG + tig0006342:7269-7288 None:intergenic 55.0%
CCATGGCTGCTGTTCTTCTC+AGG - tig0006342:7266-7285 Msa1343280:CDS 55.0%
GGGCACCTTGCTTTCAGTTC+TGG + tig0006342:9004-9023 None:intergenic 55.0%
CCTGAGAAGAACAGCAGCCA+TGG + tig0006342:7269-7288 None:intergenic 55.0%
CCATGGCTGCTGTTCTTCTC+AGG - tig0006342:7266-7285 Msa1343280:CDS 55.0%
GGGCACCTTGCTTTCAGTTC+TGG + tig0006342:9004-9023 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0006342 gene 7109 9318 7109 ID=Msa1343280;Name=Msa1343280
tig0006342 mRNA 7109 9318 7109 ID=Msa1343280-mRNA-1;Parent=Msa1343280;Name=Msa1343280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|312
tig0006342 exon 9112 9318 9112 ID=Msa1343280-mRNA-1:exon:4086;Parent=Msa1343280-mRNA-1
tig0006342 exon 8847 9029 8847 ID=Msa1343280-mRNA-1:exon:4085;Parent=Msa1343280-mRNA-1
tig0006342 exon 8583 8712 8583 ID=Msa1343280-mRNA-1:exon:4084;Parent=Msa1343280-mRNA-1
tig0006342 exon 7109 7527 7109 ID=Msa1343280-mRNA-1:exon:4083;Parent=Msa1343280-mRNA-1
tig0006342 CDS 9112 9318 9112 ID=Msa1343280-mRNA-1:cds;Parent=Msa1343280-mRNA-1
tig0006342 CDS 8847 9029 8847 ID=Msa1343280-mRNA-1:cds;Parent=Msa1343280-mRNA-1
tig0006342 CDS 8583 8712 8583 ID=Msa1343280-mRNA-1:cds;Parent=Msa1343280-mRNA-1
tig0006342 CDS 7109 7527 7109 ID=Msa1343280-mRNA-1:cds;Parent=Msa1343280-mRNA-1
Gene Sequence

>Msa1343280

ATGGCTTACTTTGTTTTTTTGTCTCTCTTATTCTTATTCTTAATCTTAATTGATGGTTCTAAGAGTCAGCTTCATGTTGGTTTCTACTCCAACACATGTCCTCAAGTAGAGTCCACTGTCCATGATGTTGTTAGAGAAGCTGTTCTTTCTGACAGAACCATGGCTGCTGTTCTTCTCAGGCTTCATTTTCATGACTGCTTTGTTGAGGGATGTGATGGTTCAATACTGATTAATACTACTCAAAATCCAGAGAAGACTGCATCTCCACATGCAGGTGTTAGAGGATATGATGTGATAGAAAAAGCCAAGGCACAATTAGAAGCATCTTGTCCAGGAGTGGTTTCTTGTGCAGATATTGTTGCTTTGGCAGCAAGAGATGCAATTGTCATGGCAAATGGACCTGCATATCAAGTTCCAACAGGGAGAAGAGATGGATTGGTTTCAGATAAATCTCTTGCAGATAATATGCCGGATGTTGATGATTCAATTCAGCAACTCAAGGCCAAGTTTCTGAACAAGGCTGCTCATACAATTGGAACCACAGCATGCTTCTTTATGAGAAAAAGACTATACGAATTTTTCCCATTTGGATCAGACCCAACTATTAACCTGAATTTCCTCCCAGAACTGAAAGCAAGGTGCCCTAAGGATGGAGATATCAACAAACGTTTAGCCATGGATGAAGGGAGTGATCTGAAATTTGACAAGAGTATATTGAAAAACATAAGGGAAGGTTTTGCTGTGTTAGCTTCTGATGCAAGACTTAATGATGACTTTGTAACAAAGAGTGTCATTGATTCCTACTTTAATCCTATAAATCCAACATTTGGACCTTCTTTTGAAAATGATTTTGTTCAGTCAATGGTAAAAATGGGACAAATTGGAGTAAAGACAGGTTCTGTTGGAAACATTAGGCGTGTGTGCTCAGCTTTTAATTGA
Protein sequence

>Msa1343280

MAYFVFLSLLFLFLILIDGSKSQLHVGFYSNTCPQVESTVHDVVREAVLSDRTMAAVLLRLHFHDCFVEGCDGSILINTTQNPEKTASPHAGVRGYDVIEKAKAQLEASCPGVVSCADIVALAARDAIVMANGPAYQVPTGRRDGLVSDKSLADNMPDVDDSIQQLKAKFLNKAAHTIGTTACFFMRKRLYEFFPFGSDPTINLNFLPELKARCPKDGDINKRLAMDEGSDLKFDKSILKNIREGFAVLASDARLNDDFVTKSVIDSYFNPINPTFGPSFENDFVQSMVKMGQIGVKTGSVGNIRRVCSAFN*