Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313870 | XP_013462549.1 | 97.039 | 439 | 12 | 1 | 1 | 438 | 1 | 439 | 0.0 | 878 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313870 | sp|Q08448|LPL1_YEAST | 26.050 | 238 | 132 | 8 | 84 | 311 | 6 | 209 | 4.81e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0313870 | Msa1225650 | 0.831703 | 1.436643e-55 | -8.615850e-47 |
| Msa0313870 | Msa1413190 | 0.821971 | 3.040363e-53 | -8.615850e-47 |
| Msa0313870 | Msa1429510 | 0.827699 | 1.354497e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313870 | MtrunA17_Chr2g0283771 | 97.039 | 439 | 12 | 1 | 1 | 438 | 1 | 439 | 0.0 | 878 |
| Msa0313870 | MtrunA17_Chr8g0379001 | 72.667 | 450 | 108 | 7 | 3 | 438 | 2 | 450 | 0.0 | 645 |
| Msa0313870 | MtrunA17_Chr4g0072801 | 44.476 | 353 | 173 | 5 | 82 | 426 | 72 | 409 | 6.30e-92 | 284 |
| Msa0313870 | MtrunA17_Chr0c06g0493481 | 43.370 | 362 | 170 | 8 | 79 | 426 | 76 | 416 | 2.71e-90 | 280 |
| Msa0313870 | MtrunA17_Chr3g0140681 | 42.210 | 353 | 190 | 6 | 79 | 427 | 56 | 398 | 1.57e-88 | 275 |
| Msa0313870 | MtrunA17_Chr1g0170451 | 44.444 | 342 | 169 | 5 | 83 | 424 | 30 | 350 | 3.59e-88 | 272 |
| Msa0313870 | MtrunA17_Chr7g0214251 | 50.575 | 87 | 40 | 2 | 149 | 232 | 40 | 126 | 1.62e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313870 | AT1G29120.1 | 66.832 | 404 | 121 | 5 | 39 | 438 | 60 | 454 | 0.0 | 520 |
| Msa0313870 | AT1G29120.8 | 66.832 | 404 | 122 | 5 | 39 | 438 | 60 | 455 | 0.0 | 520 |
| Msa0313870 | AT1G29120.2 | 66.832 | 404 | 121 | 5 | 39 | 438 | 60 | 454 | 0.0 | 520 |
| Msa0313870 | AT1G29120.5 | 66.420 | 405 | 122 | 6 | 39 | 438 | 60 | 455 | 2.00e-180 | 511 |
| Msa0313870 | AT1G29120.7 | 67.725 | 378 | 109 | 5 | 39 | 412 | 60 | 428 | 2.12e-170 | 485 |
| Msa0313870 | AT1G29120.3 | 67.456 | 338 | 97 | 5 | 39 | 372 | 60 | 388 | 1.60e-147 | 426 |
| Msa0313870 | AT1G29120.4 | 67.456 | 338 | 97 | 5 | 39 | 372 | 60 | 388 | 1.77e-147 | 425 |
| Msa0313870 | AT1G29120.6 | 65.169 | 267 | 83 | 4 | 39 | 304 | 60 | 317 | 6.03e-113 | 335 |
| Msa0313870 | AT4G25770.1 | 47.674 | 344 | 159 | 4 | 82 | 424 | 91 | 414 | 1.66e-96 | 296 |
| Msa0313870 | AT4G25770.2 | 47.385 | 325 | 150 | 4 | 82 | 405 | 91 | 395 | 8.68e-89 | 276 |
| Msa0313870 | AT5G51180.2 | 42.690 | 342 | 174 | 5 | 83 | 424 | 34 | 353 | 1.17e-87 | 271 |
| Msa0313870 | AT5G51180.1 | 42.690 | 342 | 174 | 5 | 83 | 424 | 34 | 353 | 1.17e-87 | 271 |
| Msa0313870 | AT1G10040.1 | 42.090 | 354 | 180 | 6 | 79 | 426 | 76 | 410 | 1.85e-85 | 268 |
| Msa0313870 | AT1G10040.2 | 42.342 | 333 | 167 | 6 | 79 | 405 | 76 | 389 | 3.99e-78 | 248 |
Find 160 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTAGCTCCATTGTTTAT+TGG | 0.190651 | 2_4:+9315081 | Msa0313870:CDS |
| CCTGAAGCGAATATCCTTTC+TGG | 0.194294 | 2_4:+9314296 | Msa0313870:CDS |
| TGTAGAATTTCATGAAATTA+TGG | 0.246342 | 2_4:+9316148 | Msa0313870:CDS |
| GCTTACACTAAGACATTTAC+TGG | 0.264384 | 2_4:+9314111 | Msa0313870:CDS |
| ACACGTAGGAAAATTGAATA+AGG | 0.270828 | 2_4:+9316634 | Msa0313870:three_prime_UTR |
| TAAGTAAGTGTGAAATTTCT+TGG | 0.281576 | 2_4:-9311404 | None:intergenic |
| CCACATTCGTAAACCTTTAC+TGG | 0.281747 | 2_4:+9316606 | Msa0313870:three_prime_UTR |
| TACAATTATTTGGAAAGTTC+TGG | 0.286429 | 2_4:+9311452 | Msa0313870:five_prime_UTR |
| CTACAACGCGCGTAAATAAA+AGG | 0.296569 | 2_4:-9311502 | None:intergenic |
| GCAGTACATGGATGTTACTA+TGG | 0.298616 | 2_4:-9316375 | None:intergenic |
| TTGTTCTTGTCCATGGTATC+TGG | 0.304231 | 2_4:+9312916 | Msa0313870:CDS |
| AAGTTCGATTTCCCTCCTTA+TGG | 0.311023 | 2_4:-9315443 | None:intergenic |
| TGAATTTACACAGAAAATAA+TGG | 0.312150 | 2_4:-9316795 | None:intergenic |
| TCCTTTCTGGCCCATTCTCT+TGG | 0.333297 | 2_4:+9314309 | Msa0313870:CDS |
| TGAGGTCCATCGGAAGGAAT+TGG | 0.338684 | 2_4:-9316071 | None:intergenic |
| GTTCTGGTTCCTTTGCTATA+TGG | 0.340792 | 2_4:+9311468 | Msa0313870:exon |
| AGTGGCCATCCCAGCTCATC+TGG | 0.343799 | 2_4:+9311286 | Msa0313870:five_prime_UTR |
| ACAGCCTCCACGCCAATCTT+TGG | 0.344306 | 2_4:+9316010 | Msa0313870:intron |
| AGAAGAGTGTAAGGTATCTT+TGG | 0.350757 | 2_4:+9316713 | Msa0313870:three_prime_UTR |
| GAGGTCCATCGGAAGGAATT+GGG | 0.357643 | 2_4:-9316070 | None:intergenic |
| ATCAGGTTGGCCACTATTAT+AGG | 0.360766 | 2_4:-9314379 | None:intergenic |
| TCCTTTGCTTTCACTGCCTC+CGG | 0.369392 | 2_4:-9316101 | None:intergenic |
| TACTCATAGCTTCAGCTCTA+AGG | 0.378413 | 2_4:-9312827 | None:intergenic |
| TCAACTTTCACTCAGCAGTT+TGG | 0.384156 | 2_4:+9316341 | Msa0313870:CDS |
| CAAAAGAAGGGATGGTTTGT+TGG | 0.385209 | 2_4:-9315142 | None:intergenic |
| AGGTGAGTGAAAATGAAGTT+AGG | 0.392637 | 2_4:-9311598 | None:intergenic |
| CCAACGCGGCCAATCTTTGT+TGG | 0.393315 | 2_4:-9316975 | None:intergenic |
| GGTGGAGGAAGAAGAGCAAC+AGG | 0.395750 | 2_4:-9311575 | None:intergenic |
| TGGCCACTATTATAGGTATC+AGG | 0.400578 | 2_4:-9314372 | None:intergenic |
| CAATTGCATATCTAGCAAAT+AGG | 0.405550 | 2_4:-9314335 | None:intergenic |
| GCTAAAGTAATAAAATTCAT+TGG | 0.408625 | 2_4:-9314471 | None:intergenic |
| AAACCAAGAGGCATCGTTAC+GGG | 0.412999 | 2_4:+9317032 | Msa0313870:three_prime_UTR |
| TCGCAGTTTGCTGGATCATC+AGG | 0.414201 | 2_4:-9314396 | None:intergenic |
| TTTAACAGAGGAGATGATAC+AGG | 0.415436 | 2_4:+9316285 | Msa0313870:intron |
| CATCTCCTTGTTCTTGTCCA+TGG | 0.421595 | 2_4:+9312909 | Msa0313870:CDS |
| TCCGCATAACTCCAGTCACC+TGG | 0.422658 | 2_4:-9313544 | None:intergenic |
| CGCGGCCAATCTTTGTTGGA+TGG | 0.423379 | 2_4:-9316971 | None:intergenic |
| GATACAGGGATTACAAAGAT+TGG | 0.424431 | 2_4:+9316300 | Msa0313870:CDS |
| TTTCTGGCCCATTCTCTTGG+AGG | 0.425581 | 2_4:+9314312 | Msa0313870:CDS |
| ACTCCGCATCTTGGCGTAAG+AGG | 0.426849 | 2_4:+9314495 | Msa0313870:CDS |
| TTGTCCATGGTATCTGGTCT+AGG | 0.430182 | 2_4:+9312922 | Msa0313870:CDS |
| AAAAGAAGGGATGGTTTGTT+GGG | 0.430748 | 2_4:-9315141 | None:intergenic |
| ATCGGAACACCGAACAGAAA+TGG | 0.430885 | 2_4:-9315039 | None:intergenic |
| AAGAGGGATGATTGCTGGAC+TGG | 0.433128 | 2_4:+9314446 | Msa0313870:CDS |
| GAATTTACACAGAAAATAAT+GGG | 0.434251 | 2_4:-9316794 | None:intergenic |
| TAAATGTTGTGATAAGAAAC+AGG | 0.435922 | 2_4:+9316582 | Msa0313870:three_prime_UTR |
| ACAACATTTATTTATGATGT+TGG | 0.437266 | 2_4:-9316569 | None:intergenic |
| GTTTGTATTGATGTATCAAA+TGG | 0.437523 | 2_4:-9316846 | None:intergenic |
| CAATTGTGAGCCAGATGAGC+TGG | 0.442144 | 2_4:-9311296 | None:intergenic |
| CCAGAAAGGATATTCGCTTC+AGG | 0.442879 | 2_4:-9314296 | None:intergenic |
| ACAAGAACAAGGAGATGATC+AGG | 0.445282 | 2_4:-9312903 | None:intergenic |
| ACTGATACAGCCCAGGTGAC+TGG | 0.446874 | 2_4:+9313533 | Msa0313870:intron |
| TTAATAGAATCTCTGGACTA+AGG | 0.447403 | 2_4:-9316947 | None:intergenic |
| GTTACGGGCACAAGATCATT+TGG | 0.449814 | 2_4:+9317047 | Msa0313870:three_prime_UTR |
| TGGAGGAAGAAGAGCAACAG+GGG | 0.449972 | 2_4:-9311573 | None:intergenic |
| AAGTAAGTGTGAAATTTCTT+GGG | 0.452608 | 2_4:-9311403 | None:intergenic |
| AGAACGTGTTTCTCAAACTA+GGG | 0.453072 | 2_4:+9316763 | Msa0313870:three_prime_UTR |
| CAGAAGCCATTCTCAAAAGA+AGG | 0.453668 | 2_4:-9315155 | None:intergenic |
| CAAATAGGCCTCCAAGAGAA+TGG | 0.458924 | 2_4:-9314320 | None:intergenic |
| TCAAAGCTTCCATTTCTGTT+CGG | 0.459099 | 2_4:+9315030 | Msa0313870:intron |
| AGTGTCAGGAGAAGAGTGTA+AGG | 0.460987 | 2_4:+9316704 | Msa0313870:three_prime_UTR |
| ATGGCCACTGCCTACCAATC+AGG | 0.461444 | 2_4:-9311272 | None:intergenic |
| CGATGGACCTCAATTTCCTC+CGG | 0.468852 | 2_4:+9316082 | Msa0313870:CDS |
| CTACGTGTATAGACCAGTAA+AGG | 0.472537 | 2_4:-9316619 | None:intergenic |
| GGATGGCTTAATAGAATCTC+TGG | 0.472863 | 2_4:-9316954 | None:intergenic |
| TTTGTATTGATGTATCAAAT+GGG | 0.473174 | 2_4:-9316845 | None:intergenic |
| TAACCTATATAGATATGGTT+GGG | 0.474158 | 2_4:+9315407 | Msa0313870:intron |
| CACGTAGGAAAATTGAATAA+GGG | 0.476312 | 2_4:+9316635 | Msa0313870:three_prime_UTR |
| GTGCCCGTAACGATGCCTCT+TGG | 0.477328 | 2_4:-9317035 | None:intergenic |
| GCTTGTATCCATCCAAAGAT+TGG | 0.478195 | 2_4:-9316022 | None:intergenic |
| ATGGCTTCTGACTGTGAAGA+TGG | 0.478288 | 2_4:+9315168 | Msa0313870:CDS |
| TTAAGCCATCCAACAAAGAT+TGG | 0.479936 | 2_4:+9316966 | Msa0313870:three_prime_UTR |
| TGTTGGGTTTATCATCAGTA+AGG | 0.480234 | 2_4:-9315125 | None:intergenic |
| ATCTGATAGTATATAGTGTC+AGG | 0.481869 | 2_4:+9316690 | Msa0313870:three_prime_UTR |
| TCACCTGATACCTATAATAG+TGG | 0.482484 | 2_4:+9314369 | Msa0313870:CDS |
| AAATTATGAAATCTAGCAAA+TGG | 0.485991 | 2_4:+9316922 | Msa0313870:three_prime_UTR |
| ACTTTAGCAACTCCGCATCT+TGG | 0.486963 | 2_4:+9314486 | Msa0313870:CDS |
| CCAATAAACAATGGAGCTAC+AGG | 0.492808 | 2_4:-9315081 | None:intergenic |
| TAGCTCCATTGTTTATTGGT+CGG | 0.497267 | 2_4:+9315085 | Msa0313870:CDS |
| GGTGAGTGAAAATGAAGTTA+GGG | 0.497782 | 2_4:-9311597 | None:intergenic |
| AAGAAATGGCTTCACAATGC+TGG | 0.502561 | 2_4:+9316485 | Msa0313870:CDS |
| AAAACCAAGAGGCATCGTTA+CGG | 0.503479 | 2_4:+9317031 | Msa0313870:three_prime_UTR |
| ATAAGGAGGGAAATCGAACT+TGG | 0.506230 | 2_4:+9315445 | Msa0313870:CDS |
| ATACAGGGATTACAAAGATT+GGG | 0.509448 | 2_4:+9316301 | Msa0313870:CDS |
| AAGTCTCCTGCTAAAACCAC+TGG | 0.510527 | 2_4:+9312864 | Msa0313870:CDS |
| TTTACTGGGATTGATGAAGC+TGG | 0.513591 | 2_4:+9314126 | Msa0313870:CDS |
| CCAGTAAAGGTTTACGAATG+TGG | 0.514517 | 2_4:-9316606 | None:intergenic |
| ACTGCCTCCGGAGGAAATTG+AGG | 0.515275 | 2_4:-9316089 | None:intergenic |
| GAAAATGAAGTTAGGGGTGG+AGG | 0.520087 | 2_4:-9311590 | None:intergenic |
| AAATAGGCCTCCAAGAGAAT+GGG | 0.520903 | 2_4:-9314319 | None:intergenic |
| CCAACAAAGATTGGCCGCGT+TGG | 0.521788 | 2_4:+9316975 | Msa0313870:three_prime_UTR |
| TTAACCTATATAGATATGGT+TGG | 0.524781 | 2_4:+9315406 | Msa0313870:intron |
| TCCAAGAGAATGGGCCAGAA+AGG | 0.524839 | 2_4:-9314310 | None:intergenic |
| AGCTATGAGTACTACCACTC+AGG | 0.525136 | 2_4:+9312839 | Msa0313870:CDS |
| TAATAGAATCTCTGGACTAA+GGG | 0.526979 | 2_4:-9316946 | None:intergenic |
| CCATTGTTTATTGGTCGGAC+TGG | 0.527917 | 2_4:+9315090 | Msa0313870:CDS |
| TTATGATGTTGGTAAAATTG+AGG | 0.528337 | 2_4:-9316558 | None:intergenic |
| GGAGGAAGAAGAGCAACAGG+GGG | 0.529934 | 2_4:-9311572 | None:intergenic |
| GGTGGCGCACGTCCTCCATA+AGG | 0.530656 | 2_4:+9315428 | Msa0313870:CDS |
| AGGAAAATTGAATAAGGGAA+AGG | 0.533832 | 2_4:+9316640 | Msa0313870:three_prime_UTR |
| AAGGATATTCGCTTCAGGCT+CGG | 0.535585 | 2_4:-9314291 | None:intergenic |
| ATTAGGTGTCGTGACCTGAT+TGG | 0.537221 | 2_4:+9311258 | None:intergenic |
| GCCATTCTCAAAAGAAGGGA+TGG | 0.545625 | 2_4:-9315150 | None:intergenic |
| AGGTCCATCGGAAGGAATTG+GGG | 0.548499 | 2_4:-9316069 | None:intergenic |
| TGTTATGACACAACAACCGC+TGG | 0.549188 | 2_4:+9311362 | Msa0313870:five_prime_UTR |
| TTCCCTCTTACGCCAAGATG+CGG | 0.550452 | 2_4:-9314498 | None:intergenic |
| TTTGCTTTCACTGCCTCCGG+AGG | 0.552823 | 2_4:-9316098 | None:intergenic |
| GAGAACGTGTTTCTCAAACT+AGG | 0.555847 | 2_4:+9316762 | Msa0313870:three_prime_UTR |
| CTCCGCATCTTGGCGTAAGA+GGG | 0.558128 | 2_4:+9314496 | Msa0313870:CDS |
| GAGGGAAATCGAACTTGGTA+AGG | 0.559034 | 2_4:+9315450 | Msa0313870:CDS |
| TGGCTTCACAATGCTGGTGT+AGG | 0.563718 | 2_4:+9316491 | Msa0313870:CDS |
| CGGAGGAAATTGAGGTCCAT+CGG | 0.564835 | 2_4:-9316081 | None:intergenic |
| GGCGCACGTCCTCCATAAGG+AGG | 0.571549 | 2_4:+9315431 | Msa0313870:CDS |
| TTCGATTTCCCTCCTTATGG+AGG | 0.572163 | 2_4:-9315440 | None:intergenic |
| CAGTACATGGATGTTACTAT+GGG | 0.572825 | 2_4:-9316374 | None:intergenic |
| CTTACACTAAGACATTTACT+GGG | 0.574022 | 2_4:+9314112 | Msa0313870:CDS |
| GTGGAGGAAGAAGAGCAACA+GGG | 0.577058 | 2_4:-9311574 | None:intergenic |
| CAGTAAAGGTTTACGAATGT+GGG | 0.583435 | 2_4:-9316605 | None:intergenic |
| GTGAGCCAGATGAGCTGGGA+TGG | 0.589418 | 2_4:-9311291 | None:intergenic |
| CCTCCACGCCAATCTTTGGA+TGG | 0.594116 | 2_4:+9316014 | Msa0313870:CDS |
| AAAATAGGGAATTACCAGAA+AGG | 0.595675 | 2_4:-9311618 | None:intergenic |
| AGTTTGCTGGATCATCAGGT+TGG | 0.596532 | 2_4:-9314392 | None:intergenic |
| TGATCCAGCAAACTGCGAGA+TGG | 0.597740 | 2_4:+9314401 | Msa0313870:CDS |
| AGAAGCCATTCTCAAAAGAA+GGG | 0.599139 | 2_4:-9315154 | None:intergenic |
| GAATTTCATGAAATTATGGA+AGG | 0.599293 | 2_4:+9316152 | Msa0313870:CDS |
| CCATCCAAAGATTGGCGTGG+AGG | 0.605389 | 2_4:-9316014 | None:intergenic |
| GCTATGAGTACTACCACTCA+GGG | 0.606664 | 2_4:+9312840 | Msa0313870:CDS |
| GACTCAACAGCAGCAACTTG+TGG | 0.607470 | 2_4:-9317000 | None:intergenic |
| AGCAGGAGACTTTCCCTGAG+TGG | 0.608321 | 2_4:-9312853 | None:intergenic |
| GGTGTCGTGACCTGATTGGT+AGG | 0.614177 | 2_4:+9311262 | None:intergenic |
| AGGGATTACAAAGATTGGGA+TGG | 0.615998 | 2_4:+9316305 | Msa0313870:CDS |
| CCGCATAACTCCAGTCACCT+GGG | 0.616017 | 2_4:-9313543 | None:intergenic |
| GGAAATTGAGGTCCATCGGA+AGG | 0.616513 | 2_4:-9316077 | None:intergenic |
| TTAACAGAGGAGATGATACA+GGG | 0.625473 | 2_4:+9316286 | Msa0313870:intron |
| AATTGTGAGCCAGATGAGCT+GGG | 0.632582 | 2_4:-9311295 | None:intergenic |
| AGATACCATGGACAAGAACA+AGG | 0.635264 | 2_4:-9312914 | None:intergenic |
| CCTATATAGATATGGTTGGG+TGG | 0.635344 | 2_4:+9315410 | Msa0313870:intron |
| ACTTCTGCAGGTGCAAACAA+AGG | 0.635660 | 2_4:+9312789 | Msa0313870:intron |
| GTGACCTGATTGGTAGGCAG+TGG | 0.636042 | 2_4:+9311268 | None:intergenic |
| TATCCATCCAAAGATTGGCG+TGG | 0.638279 | 2_4:-9316017 | None:intergenic |
| ATGCTGCTGCCATATAGCAA+AGG | 0.640400 | 2_4:-9311477 | None:intergenic |
| TGGACCTCAATTTCCTCCGG+AGG | 0.641292 | 2_4:+9316085 | Msa0313870:CDS |
| ATTACCTAGACCAGATACCA+TGG | 0.645160 | 2_4:-9312926 | None:intergenic |
| AGTGAAAATGAAGTTAGGGG+TGG | 0.648055 | 2_4:-9311593 | None:intergenic |
| AGTCTCCTGCTAAAACCACT+GGG | 0.648790 | 2_4:+9312865 | Msa0313870:CDS |
| ATCATTCTTCAGATTCCCAG+TGG | 0.649086 | 2_4:-9312880 | None:intergenic |
| GAACGTGTTTCTCAAACTAG+GGG | 0.649295 | 2_4:+9316764 | Msa0313870:three_prime_UTR |
| CCCAGGTGACTGGAGTTATG+CGG | 0.649781 | 2_4:+9313543 | Msa0313870:CDS |
| TCCGGAGGCAGTGAAAGCAA+AGG | 0.653002 | 2_4:+9316100 | Msa0313870:CDS |
| CCAGTCCGACCAATAAACAA+TGG | 0.653339 | 2_4:-9315090 | None:intergenic |
| TTGTATTGATGTATCAAATG+GGG | 0.657146 | 2_4:-9316844 | None:intergenic |
| GCGCACGTCCTCCATAAGGA+GGG | 0.668252 | 2_4:+9315432 | Msa0313870:CDS |
| ATGTTACTATGGGCAAAGAG+AGG | 0.669169 | 2_4:-9316364 | None:intergenic |
| CAAATTGTGACAAGTTCCAG+CGG | 0.669267 | 2_4:-9311378 | None:intergenic |
| GGTCCATCGGAAGGAATTGG+GGG | 0.676997 | 2_4:-9316068 | None:intergenic |
| AGGTGACTGGAGTTATGCGG+AGG | 0.678765 | 2_4:+9313546 | Msa0313870:CDS |
| GTGAGTGAAAATGAAGTTAG+GGG | 0.691619 | 2_4:-9311596 | None:intergenic |
| AGCAACTTGTGGTTCCAACG+CGG | 0.713596 | 2_4:-9316989 | None:intergenic |
| CTTTACTGGTCTATACACGT+AGG | 0.714453 | 2_4:+9316620 | Msa0313870:three_prime_UTR |
| AACGTGTTTCTCAAACTAGG+GGG | 0.716656 | 2_4:+9316765 | Msa0313870:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAAGAATAAAATA+GGG | - | chr2_4:9311635-9311654 | None:intergenic | 10.0% |
| !! | AAATTGAAAAAGAATAAAAT+AGG | - | chr2_4:9311636-9311655 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTTTTCAATTTT+AGG | + | chr2_4:9311637-9311656 | Msa0313870:intron | 10.0% |
| !!! | ATCATATATTAATATTTCTA+TGG | - | chr2_4:9312753-9312772 | None:intergenic | 10.0% |
| !!! | TTAATATATGATTTTAATGT+TGG | + | chr2_4:9312761-9312780 | Msa0313870:intron | 10.0% |
| !! | AATTAAAGATTAATTTAACA+TGG | - | chr2_4:9314037-9314056 | None:intergenic | 10.0% |
| !! | CAAAAATAGATACAATTATT+TGG | + | chr2_4:9311442-9311461 | Msa0313870:five_prime_UTR | 15.0% |
| !! | TAAAGAAAACAAGAAAAAAA+AGG | - | chr2_4:9313664-9313683 | None:intergenic | 15.0% |
| !!! | AAGAAATTTTTTGAAAATCT+TGG | + | chr2_4:9313808-9313827 | Msa0313870:intron | 15.0% |
| !!! | AGAAATTTTTTGAAAATCTT+GGG | + | chr2_4:9313809-9313828 | Msa0313870:intron | 15.0% |
| !!! | AGAAATCAAATTCATTTTTA+AGG | - | chr2_4:9314073-9314092 | None:intergenic | 15.0% |
| !! | GAACTATATAAAAATTCTAA+AGG | - | chr2_4:9314959-9314978 | None:intergenic | 15.0% |
| !!! | AGAATTTTTATATAGTTCAA+TGG | + | chr2_4:9314961-9314980 | Msa0313870:intron | 15.0% |
| !!! | GAATTTTTATATAGTTCAAT+GGG | + | chr2_4:9314962-9314981 | Msa0313870:intron | 15.0% |
| !! | AATACAAATTTCATAATCAT+AGG | - | chr2_4:9315595-9315614 | None:intergenic | 15.0% |
| !! | TGAAAACAAAAATGAAATAA+AGG | - | chr2_4:9316899-9316918 | None:intergenic | 15.0% |
| !!! | GTTTAACTTGTTCTATAATT+CGG | + | chr2_4:9311699-9311718 | Msa0313870:intron | 20.0% |
| !! | CAATAATTTGAATTCAATTG+CGG | + | chr2_4:9311911-9311930 | Msa0313870:intron | 20.0% |
| !! | AATCATCATAAATTTAGACA+TGG | - | chr2_4:9311949-9311968 | None:intergenic | 20.0% |
| !!! | TGTAGTAATTTGTATTGATT+AGG | + | chr2_4:9312125-9312144 | Msa0313870:intron | 20.0% |
| !! | GAATTCAGAATTATTCAATT+AGG | + | chr2_4:9312214-9312233 | Msa0313870:intron | 20.0% |
| !!! | TCTTTTGTTTCTCTTTAATT+CGG | + | chr2_4:9312351-9312370 | Msa0313870:intron | 20.0% |
| !!! | AAGTTTTCACTGATTATTTA+AGG | - | chr2_4:9313302-9313321 | None:intergenic | 20.0% |
| !! | TATTGAACCATAAGTAAAAA+AGG | - | chr2_4:9313620-9313639 | None:intergenic | 20.0% |
| !! | TTCAAAAAATTTCTTCTGTT+GGG | - | chr2_4:9313803-9313822 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATTTCTTCTGT+TGG | - | chr2_4:9313804-9313823 | None:intergenic | 20.0% |
| !! | GCTAAAGTAATAAAATTCAT+TGG | - | chr2_4:9314474-9314493 | None:intergenic | 20.0% |
| !! | TAAAGGAATAACACAAATTA+AGG | - | chr2_4:9315389-9315408 | None:intergenic | 20.0% |
| !! | AAAATTAATGCATTATAGTC+AGG | - | chr2_4:9315691-9315710 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACATAGGATA+TGG | - | chr2_4:9315837-9315856 | None:intergenic | 20.0% |
| !! | TGTAGAATTTCATGAAATTA+TGG | + | chr2_4:9316148-9316167 | Msa0313870:CDS | 20.0% |
| !! | ACAACATTTATTTATGATGT+TGG | - | chr2_4:9316572-9316591 | None:intergenic | 20.0% |
| !! | GAATTTACACAGAAAATAAT+GGG | - | chr2_4:9316797-9316816 | None:intergenic | 20.0% |
| !! | TGAATTTACACAGAAAATAA+TGG | - | chr2_4:9316798-9316817 | None:intergenic | 20.0% |
| !!! | TTTGTATTGATGTATCAAAT+GGG | - | chr2_4:9316848-9316867 | None:intergenic | 20.0% |
| !! | ACAAAAATGAAATAAAGGAA+TGG | - | chr2_4:9316894-9316913 | None:intergenic | 20.0% |
| !! | AAATTATGAAATCTAGCAAA+TGG | + | chr2_4:9316922-9316941 | Msa0313870:three_prime_UTR | 20.0% |
| ! | AAGTAAGTGTGAAATTTCTT+GGG | - | chr2_4:9311406-9311425 | None:intergenic | 25.0% |
| ! | TAAGTAAGTGTGAAATTTCT+TGG | - | chr2_4:9311407-9311426 | None:intergenic | 25.0% |
| ! | TACAATTATTTGGAAAGTTC+TGG | + | chr2_4:9311452-9311471 | Msa0313870:five_prime_UTR | 25.0% |
| ! | TGAGAAAAAGAAGTAATTAG+TGG | - | chr2_4:9311535-9311554 | None:intergenic | 25.0% |
| ! | AGTTAAACAACAATAAATGC+AGG | - | chr2_4:9311687-9311706 | None:intergenic | 25.0% |
| !! | TCTATAATTCGGTTAATTTG+TGG | + | chr2_4:9311710-9311729 | Msa0313870:intron | 25.0% |
| !!! | CTATAATTCGGTTAATTTGT+GGG | + | chr2_4:9311711-9311730 | Msa0313870:intron | 25.0% |
| !!! | TATAATTCGGTTAATTTGTG+GGG | + | chr2_4:9311712-9311731 | Msa0313870:intron | 25.0% |
| ! | GACAAAGAATTATTTCATTC+AGG | - | chr2_4:9311808-9311827 | None:intergenic | 25.0% |
| !!! | TAATTTGTATTGATTAGGAG+CGG | + | chr2_4:9312130-9312149 | Msa0313870:intron | 25.0% |
| ! | GTCCTATTTATACAAACTAA+GGG | - | chr2_4:9312172-9312191 | None:intergenic | 25.0% |
| ! | TTTGTATAAATAGGACCATT+TGG | + | chr2_4:9312176-9312195 | Msa0313870:intron | 25.0% |
| ! | TATTCAATTAGGAACCTTAT+TGG | + | chr2_4:9312225-9312244 | Msa0313870:intron | 25.0% |
| !!! | CTTTTGTTTCTCTTTAATTC+GGG | + | chr2_4:9312352-9312371 | Msa0313870:intron | 25.0% |
| !! | CCATTTTCTCAAATTATCAT+AGG | - | chr2_4:9312421-9312440 | None:intergenic | 25.0% |
| ! | CCTATGATAATTTGAGAAAA+TGG | + | chr2_4:9312418-9312437 | Msa0313870:intron | 25.0% |
| ! | AACTTCATGTCTAAAAAAAC+AGG | + | chr2_4:9312626-9312645 | Msa0313870:intron | 25.0% |
| ! | ACTTCATGTCTAAAAAAACA+GGG | + | chr2_4:9312627-9312646 | Msa0313870:intron | 25.0% |
| ! | TGATTGCAATTAAAAAGACT+AGG | - | chr2_4:9313229-9313248 | None:intergenic | 25.0% |
| ! | AACAAGTTAAAACATCCAAT+TGG | - | chr2_4:9313510-9313529 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAAATGAACCTT+GGG | + | chr2_4:9313569-9313588 | Msa0313870:CDS | 25.0% |
| ! | AGAAAACAAGAAAAAAAAGG+TGG | - | chr2_4:9313661-9313680 | None:intergenic | 25.0% |
| ! | AAATGCTTAAAACTCATTGA+AGG | + | chr2_4:9313728-9313747 | Msa0313870:intron | 25.0% |
| ! | TCAAAAAATTTCTTCTGTTG+GGG | - | chr2_4:9313802-9313821 | None:intergenic | 25.0% |
| ! | TCAACATATACAACTAACTA+GGG | - | chr2_4:9313979-9313998 | None:intergenic | 25.0% |
| !! | ATATTTCCTTTTATCACAAC+AGG | + | chr2_4:9314245-9314264 | Msa0313870:intron | 25.0% |
| ! | TGTTCAGAACAATCAAATTA+TGG | + | chr2_4:9314531-9314550 | Msa0313870:intron | 25.0% |
| !!! | AGCTTTTATTTTGACACATA+TGG | + | chr2_4:9314554-9314573 | Msa0313870:intron | 25.0% |
| ! | ATATACTTCTTTCTCTTAAC+TGG | + | chr2_4:9314822-9314841 | Msa0313870:intron | 25.0% |
| ! | AAACTTGAATGATTAAGCAA+TGG | - | chr2_4:9314880-9314899 | None:intergenic | 25.0% |
| ! | TGGAAAATTCATGTATGTAA+TGG | + | chr2_4:9315188-9315207 | Msa0313870:intron | 25.0% |
| !!! | TGATTGTTTTACTGAAACAA+AGG | - | chr2_4:9315239-9315258 | None:intergenic | 25.0% |
| ! | TCCTTTAACCTATATAGATA+TGG | + | chr2_4:9315402-9315421 | Msa0313870:intron | 25.0% |
| ! | ACCATATCTATATAGGTTAA+AGG | - | chr2_4:9315406-9315425 | None:intergenic | 25.0% |
| ! | TTAACCTATATAGATATGGT+TGG | + | chr2_4:9315406-9315425 | Msa0313870:intron | 25.0% |
| ! | TAACCTATATAGATATGGTT+GGG | + | chr2_4:9315407-9315426 | Msa0313870:intron | 25.0% |
| !! | GTCTTCTAATTTTGAATCAT+TGG | + | chr2_4:9315769-9315788 | Msa0313870:intron | 25.0% |
| !! | CTAATTTTGAATCATTGGAA+TGG | + | chr2_4:9315774-9315793 | Msa0313870:intron | 25.0% |
| ! | AAAATTGTGATATGTTAGCA+GGG | - | chr2_4:9315812-9315831 | None:intergenic | 25.0% |
| ! | TAAAATTGTGATATGTTAGC+AGG | - | chr2_4:9315813-9315832 | None:intergenic | 25.0% |
| ! | CTACATGGAATTTATAGTTA+TGG | - | chr2_4:9315863-9315882 | None:intergenic | 25.0% |
| ! | GAATTTCATGAAATTATGGA+AGG | + | chr2_4:9316152-9316171 | Msa0313870:CDS | 25.0% |
| !!! | TCTTCTATTAGTTTTGGTTA+TGG | - | chr2_4:9316184-9316203 | None:intergenic | 25.0% |
| !!! | AGAGTATCTTCTATTAGTTT+TGG | - | chr2_4:9316190-9316209 | None:intergenic | 25.0% |
| !!! | AGATACTCTAGTTTACATTT+TGG | + | chr2_4:9316201-9316220 | Msa0313870:intron | 25.0% |
| !!! | GATACTCTAGTTTACATTTT+GGG | + | chr2_4:9316202-9316221 | Msa0313870:intron | 25.0% |
| ! | TTTATAACATGAGTATTCCT+TGG | + | chr2_4:9316449-9316468 | Msa0313870:intron | 25.0% |
| !! | TTATGATGTTGGTAAAATTG+AGG | - | chr2_4:9316561-9316580 | None:intergenic | 25.0% |
| ! | TAAATGTTGTGATAAGAAAC+AGG | + | chr2_4:9316582-9316601 | Msa0313870:three_prime_UTR | 25.0% |
| !! | TTGTATTGATGTATCAAATG+GGG | - | chr2_4:9316847-9316866 | None:intergenic | 25.0% |
| !! | GTTTGTATTGATGTATCAAA+TGG | - | chr2_4:9316849-9316868 | None:intergenic | 25.0% |
| AAAATAGGGAATTACCAGAA+AGG | - | chr2_4:9311621-9311640 | None:intergenic | 30.0% | |
| ACCAAGTAATTGAGTTCAAT+CGG | + | chr2_4:9311767-9311786 | Msa0313870:intron | 30.0% | |
| TATGAAGCACATACATTGTT+AGG | + | chr2_4:9311975-9311994 | Msa0313870:intron | 30.0% | |
| !! | ATGCAGTATTTGTGTTGATT+AGG | + | chr2_4:9312085-9312104 | Msa0313870:intron | 30.0% |
| !! | TGCCCTTAGTTTGTATAAAT+AGG | + | chr2_4:9312167-9312186 | Msa0313870:intron | 30.0% |
| GGTCCTATTTATACAAACTA+AGG | - | chr2_4:9312173-9312192 | None:intergenic | 30.0% | |
| GAGTTAAAAGATAGTCTGAA+CGG | + | chr2_4:9312981-9313000 | Msa0313870:intron | 30.0% | |
| AAGAAAAACCAACAAGCTTA+AGG | + | chr2_4:9313012-9313031 | Msa0313870:intron | 30.0% | |
| CATAAAAACCTTAAGCTTGT+TGG | - | chr2_4:9313023-9313042 | None:intergenic | 30.0% | |
| TAACCAACATTGTTTCACAA+TGG | - | chr2_4:9313073-9313092 | None:intergenic | 30.0% | |
| CAATTAAAAAGACTAGGACA+GGG | - | chr2_4:9313223-9313242 | None:intergenic | 30.0% | |
| !! | AGGTTTTAGTGCAAGATATA+TGG | - | chr2_4:9313339-9313358 | None:intergenic | 30.0% |
| ATATATCTTGCACTAAAACC+TGG | + | chr2_4:9313338-9313357 | Msa0313870:intron | 30.0% | |
| TGCACAATATCTCTAGTAAT+TGG | + | chr2_4:9313392-9313411 | Msa0313870:intron | 30.0% | |
| TATCTCTAGTAATTGGATGT+TGG | + | chr2_4:9313399-9313418 | Msa0313870:intron | 30.0% | |
| GAAGAGTTAAAAATGAACCT+TGG | + | chr2_4:9313568-9313587 | Msa0313870:CDS | 30.0% | |
| ! | GAATTAAAAAGCTTTTCCCA+AGG | - | chr2_4:9313588-9313607 | None:intergenic | 30.0% |
| !! | GGGAAAAGCTTTTTAATTCA+TGG | + | chr2_4:9313589-9313608 | Msa0313870:CDS | 30.0% |
| !!! | GGTAACTCCTTTTTTACTTA+TGG | + | chr2_4:9313610-9313629 | Msa0313870:intron | 30.0% |
| GGTGGTAGAAACAAAATAAA+TGG | - | chr2_4:9313643-9313662 | None:intergenic | 30.0% | |
| TTAAAACTCATTGAAGGTAG+TGG | + | chr2_4:9313734-9313753 | Msa0313870:intron | 30.0% | |
| AATTTCACAGAAAACAAGCA+TGG | - | chr2_4:9313914-9313933 | None:intergenic | 30.0% | |
| CTCAACATATACAACTAACT+AGG | - | chr2_4:9313980-9313999 | None:intergenic | 30.0% | |
| CTTACACTAAGACATTTACT+GGG | + | chr2_4:9314112-9314131 | Msa0313870:CDS | 30.0% | |
| CAATTGCATATCTAGCAAAT+AGG | - | chr2_4:9314338-9314357 | None:intergenic | 30.0% | |
| ! | TACTGTATGTTTTATGCTGA+TGG | + | chr2_4:9314621-9314640 | Msa0313870:intron | 30.0% |
| TCACAGCTTACATAATGTTT+AGG | + | chr2_4:9314645-9314664 | Msa0313870:intron | 30.0% | |
| !!! | TCCTACGAATTTTTTCTTAC+TGG | + | chr2_4:9314756-9314775 | Msa0313870:intron | 30.0% |
| !!! | CCTACGAATTTTTTCTTACT+GGG | + | chr2_4:9314757-9314776 | Msa0313870:intron | 30.0% |
| ! | AATAAGTGTCACTAATACAC+TGG | - | chr2_4:9315355-9315374 | None:intergenic | 30.0% |
| AGTGTATTAGTGACACTTAT+TGG | + | chr2_4:9315354-9315373 | Msa0313870:intron | 30.0% | |
| AACACAAATTAAGGAGGAAA+GGG | - | chr2_4:9315380-9315399 | None:intergenic | 30.0% | |
| TAACACAAATTAAGGAGGAA+AGG | - | chr2_4:9315381-9315400 | None:intergenic | 30.0% | |
| AGGAATAACACAAATTAAGG+AGG | - | chr2_4:9315386-9315405 | None:intergenic | 30.0% | |
| ! | TTGTCTCCTTTTTATGTTGA+AGG | + | chr2_4:9315499-9315518 | Msa0313870:intron | 30.0% |
| TTGAGACCTTCAACATAAAA+AGG | - | chr2_4:9315508-9315527 | None:intergenic | 30.0% | |
| ! | AGAAGACTGAAGTGTTAAAT+TGG | - | chr2_4:9315756-9315775 | None:intergenic | 30.0% |
| ! | TGGTGGAATATTTGAAACAT+AGG | - | chr2_4:9315843-9315862 | None:intergenic | 30.0% |
| CATGGAATTTATAGTTATGG+TGG | - | chr2_4:9315860-9315879 | None:intergenic | 30.0% | |
| CATTGAACTACATATCTACA+TGG | - | chr2_4:9315878-9315897 | None:intergenic | 30.0% | |
| TTGGCTTAAGTTTCAGAAAA+AGG | + | chr2_4:9315913-9315932 | Msa0313870:intron | 30.0% | |
| ! | ATAAGACAACACAATGGTTT+TGG | - | chr2_4:9316245-9316264 | None:intergenic | 30.0% |
| ATACAGGGATTACAAAGATT+GGG | + | chr2_4:9316301-9316320 | Msa0313870:CDS | 30.0% | |
| ! | GATTTCAGGTGAAAAAGAAA+TGG | + | chr2_4:9316471-9316490 | Msa0313870:intron | 30.0% |
| ACACGTAGGAAAATTGAATA+AGG | + | chr2_4:9316634-9316653 | Msa0313870:three_prime_UTR | 30.0% | |
| CACGTAGGAAAATTGAATAA+GGG | + | chr2_4:9316635-9316654 | Msa0313870:three_prime_UTR | 30.0% | |
| AGGAAAATTGAATAAGGGAA+AGG | + | chr2_4:9316640-9316659 | Msa0313870:three_prime_UTR | 30.0% | |
| ATCTGATAGTATATAGTGTC+AGG | + | chr2_4:9316690-9316709 | Msa0313870:three_prime_UTR | 30.0% | |
| TAATAGAATCTCTGGACTAA+GGG | - | chr2_4:9316949-9316968 | None:intergenic | 30.0% | |
| TTAATAGAATCTCTGGACTA+AGG | - | chr2_4:9316950-9316969 | None:intergenic | 30.0% | |
| GTGAGTGAAAATGAAGTTAG+GGG | - | chr2_4:9311599-9311618 | None:intergenic | 35.0% | |
| GGTGAGTGAAAATGAAGTTA+GGG | - | chr2_4:9311600-9311619 | None:intergenic | 35.0% | |
| AGGTGAGTGAAAATGAAGTT+AGG | - | chr2_4:9311601-9311620 | None:intergenic | 35.0% | |
| ! | TTCATTTTCACTCACCTTTC+TGG | + | chr2_4:9311604-9311623 | Msa0313870:CDS | 35.0% |
| ! | AATGCAGGAGTTTAGAACAA+GGG | - | chr2_4:9311672-9311691 | None:intergenic | 35.0% |
| ! | AAATGCAGGAGTTTAGAACA+AGG | - | chr2_4:9311673-9311692 | None:intergenic | 35.0% |
| ACCGATTGAACTCAATTACT+TGG | - | chr2_4:9311771-9311790 | None:intergenic | 35.0% | |
| ! | ATTCTTTTCTGTTAGAGCTC+CGG | - | chr2_4:9311887-9311906 | None:intergenic | 35.0% |
| GCACATACATTGTTAGGTAT+CGG | + | chr2_4:9311981-9312000 | Msa0313870:intron | 35.0% | |
| CACATACATTGTTAGGTATC+GGG | + | chr2_4:9311982-9312001 | Msa0313870:intron | 35.0% | |
| !!! | TTTTTCTCTGGGATTACAGA+GGG | + | chr2_4:9312286-9312305 | Msa0313870:intron | 35.0% |
| GCATCATTCAGTGTAATCAT+AGG | + | chr2_4:9312440-9312459 | Msa0313870:intron | 35.0% | |
| TTCAGTGTAATCATAGGTGT+CGG | + | chr2_4:9312446-9312465 | Msa0313870:intron | 35.0% | |
| ! | ATGTCAGAGCTTTAGTACAT+CGG | + | chr2_4:9312704-9312723 | Msa0313870:intron | 35.0% |
| ATGGCATGTTACCTACAAAA+GGG | - | chr2_4:9312734-9312753 | None:intergenic | 35.0% | |
| TATGGCATGTTACCTACAAA+AGG | - | chr2_4:9312735-9312754 | None:intergenic | 35.0% | |
| GTTCCATTGTGAAACAATGT+TGG | + | chr2_4:9313067-9313086 | Msa0313870:intron | 35.0% | |
| GAGAACATCACAAAAGAACT+CGG | - | chr2_4:9313157-9313176 | None:intergenic | 35.0% | |
| GCAATTAAAAAGACTAGGAC+AGG | - | chr2_4:9313224-9313243 | None:intergenic | 35.0% | |
| GATCTTTCCATAGAAAAGCA+AGG | + | chr2_4:9313251-9313270 | Msa0313870:intron | 35.0% | |
| CTATAAGAGCTTATTGATCC+AGG | - | chr2_4:9313359-9313378 | None:intergenic | 35.0% | |
| CAAAATAGTGAACAAATGCC+AGG | - | chr2_4:9313470-9313489 | None:intergenic | 35.0% | |
| ! | TTTGTTCACTATTTTGCTGC+TGG | + | chr2_4:9313474-9313493 | Msa0313870:intron | 35.0% |
| TAGTGTGATCAACTTTGAGT+TGG | - | chr2_4:9313875-9313894 | None:intergenic | 35.0% | |
| GCTTACACTAAGACATTTAC+TGG | + | chr2_4:9314111-9314130 | Msa0313870:CDS | 35.0% | |
| TCACCTGATACCTATAATAG+TGG | + | chr2_4:9314369-9314388 | Msa0313870:CDS | 35.0% | |
| CCCAGTAAGAAAAAATTCGT+AGG | - | chr2_4:9314760-9314779 | None:intergenic | 35.0% | |
| TCAAAGCTTCCATTTCTGTT+CGG | + | chr2_4:9315030-9315049 | Msa0313870:intron | 35.0% | |
| TAGCTCCATTGTTTATTGGT+CGG | + | chr2_4:9315085-9315104 | Msa0313870:CDS | 35.0% | |
| TGTTGGGTTTATCATCAGTA+AGG | - | chr2_4:9315128-9315147 | None:intergenic | 35.0% | |
| !! | AAAAGAAGGGATGGTTTGTT+GGG | - | chr2_4:9315144-9315163 | None:intergenic | 35.0% |
| AGAAGCCATTCTCAAAAGAA+GGG | - | chr2_4:9315157-9315176 | None:intergenic | 35.0% | |
| ! | ATGTTTTGTAGATCTGCACT+TGG | + | chr2_4:9315277-9315296 | Msa0313870:intron | 35.0% |
| AATGTAGAAACGCAACATGT+TGG | + | chr2_4:9315894-9315913 | Msa0313870:intron | 35.0% | |
| CCTCTGTTAAAAACATCATG+TGG | - | chr2_4:9316276-9316295 | None:intergenic | 35.0% | |
| !! | CCACATGATGTTTTTAACAG+AGG | + | chr2_4:9316273-9316292 | Msa0313870:intron | 35.0% |
| TTTAACAGAGGAGATGATAC+AGG | + | chr2_4:9316285-9316304 | Msa0313870:intron | 35.0% | |
| TTAACAGAGGAGATGATACA+GGG | + | chr2_4:9316286-9316305 | Msa0313870:intron | 35.0% | |
| GATACAGGGATTACAAAGAT+TGG | + | chr2_4:9316300-9316319 | Msa0313870:CDS | 35.0% | |
| CAGTACATGGATGTTACTAT+GGG | - | chr2_4:9316377-9316396 | None:intergenic | 35.0% | |
| ATTCAGAGAAATGCAGTACA+TGG | - | chr2_4:9316390-9316409 | None:intergenic | 35.0% | |
| ATGAGTATTCCTTGGATTTC+AGG | + | chr2_4:9316457-9316476 | Msa0313870:intron | 35.0% | |
| !! | TCTTTTTCACCTGAAATCCA+AGG | - | chr2_4:9316469-9316488 | None:intergenic | 35.0% |
| CAGTAAAGGTTTACGAATGT+GGG | - | chr2_4:9316608-9316627 | None:intergenic | 35.0% | |
| ! | AGAAGAGTGTAAGGTATCTT+TGG | + | chr2_4:9316713-9316732 | Msa0313870:three_prime_UTR | 35.0% |
| AGAACGTGTTTCTCAAACTA+GGG | + | chr2_4:9316763-9316782 | Msa0313870:three_prime_UTR | 35.0% | |
| TTAAGCCATCCAACAAAGAT+TGG | + | chr2_4:9316966-9316985 | Msa0313870:three_prime_UTR | 35.0% | |
| CAAATTGTGACAAGTTCCAG+CGG | - | chr2_4:9311381-9311400 | None:intergenic | 40.0% | |
| !! | GTTCTGGTTCCTTTGCTATA+TGG | + | chr2_4:9311468-9311487 | Msa0313870:exon | 40.0% |
| CTACAACGCGCGTAAATAAA+AGG | - | chr2_4:9311505-9311524 | None:intergenic | 40.0% | |
| AGTGAAAATGAAGTTAGGGG+TGG | - | chr2_4:9311596-9311615 | None:intergenic | 40.0% | |
| CTTACTTGCTTGCCAAACTT+TGG | + | chr2_4:9311836-9311855 | Msa0313870:intron | 40.0% | |
| CTTGCCAAACTTTGGATTGT+CGG | + | chr2_4:9311844-9311863 | Msa0313870:intron | 40.0% | |
| TTGCCAAACTTTGGATTGTC+GGG | + | chr2_4:9311845-9311864 | Msa0313870:intron | 40.0% | |
| !! | ATACATTGTTAGGTATCGGG+TGG | + | chr2_4:9311985-9312004 | Msa0313870:intron | 40.0% |
| !! | TGTGTTGATTAGGAGCAGTT+AGG | + | chr2_4:9312095-9312114 | Msa0313870:intron | 40.0% |
| ! | TATTGATTAGGAGCGGTTAC+AGG | + | chr2_4:9312137-9312156 | Msa0313870:intron | 40.0% |
| CTCTCTGCTCAAAACCAATA+AGG | - | chr2_4:9312242-9312261 | None:intergenic | 40.0% | |
| AGAGAAATGTCTCTTCTCTG+AGG | + | chr2_4:9312260-9312279 | Msa0313870:intron | 40.0% | |
| !!! | CTTTTTCTCTGGGATTACAG+AGG | + | chr2_4:9312285-9312304 | Msa0313870:intron | 40.0% |
| ! | ATTCGGGTTCCTATCATACA+TGG | + | chr2_4:9312368-9312387 | Msa0313870:intron | 40.0% |
| TTCCTATCATACATGGACAC+CGG | + | chr2_4:9312375-9312394 | Msa0313870:intron | 40.0% | |
| TATGAAGCACATACACTCCT+AGG | - | chr2_4:9312508-9312527 | None:intergenic | 40.0% | |
| AAGGTCACTTGTTCAAGTCT+TGG | + | chr2_4:9312599-9312618 | Msa0313870:intron | 40.0% | |
| CTGTGTCCAATACACCAAAA+TGG | + | chr2_4:9312655-9312674 | Msa0313870:intron | 40.0% | |
| TGTCCAATACACCAAAATGG+TGG | + | chr2_4:9312658-9312677 | Msa0313870:intron | 40.0% | |
| GTCCAATACACCAAAATGGT+GGG | + | chr2_4:9312659-9312678 | Msa0313870:intron | 40.0% | |
| ! | TGTCAGAGCTTTAGTACATC+GGG | + | chr2_4:9312705-9312724 | Msa0313870:intron | 40.0% |
| TACTCATAGCTTCAGCTCTA+AGG | - | chr2_4:9312830-9312849 | None:intergenic | 40.0% | |
| ATCATTCTTCAGATTCCCAG+TGG | - | chr2_4:9312883-9312902 | None:intergenic | 40.0% | |
| ACAAGAACAAGGAGATGATC+AGG | - | chr2_4:9312906-9312925 | None:intergenic | 40.0% | |
| AGATACCATGGACAAGAACA+AGG | - | chr2_4:9312917-9312936 | None:intergenic | 40.0% | |
| TTGTTCTTGTCCATGGTATC+TGG | + | chr2_4:9312916-9312935 | Msa0313870:CDS | 40.0% | |
| ATTACCTAGACCAGATACCA+TGG | - | chr2_4:9312929-9312948 | None:intergenic | 40.0% | |
| TAAAAGATAGTCTGAACGGC+TGG | + | chr2_4:9312985-9313004 | Msa0313870:intron | 40.0% | |
| AAAAAAATGTGCCACGCACA+CGG | - | chr2_4:9313277-9313296 | None:intergenic | 40.0% | |
| !!! | TGTTTTAACTGATACAGCCC+AGG | + | chr2_4:9313526-9313545 | Msa0313870:intron | 40.0% |
| !! | GATCAACTTTGAGTTGGCTA+AGG | - | chr2_4:9313869-9313888 | None:intergenic | 40.0% |
| TTTACTGGGATTGATGAAGC+TGG | + | chr2_4:9314126-9314145 | Msa0313870:CDS | 40.0% | |
| GCATGACCTGTTGTGATAAA+AGG | - | chr2_4:9314254-9314273 | None:intergenic | 40.0% | |
| AAATAGGCCTCCAAGAGAAT+GGG | - | chr2_4:9314322-9314341 | None:intergenic | 40.0% | |
| TGGCCACTATTATAGGTATC+AGG | - | chr2_4:9314375-9314394 | None:intergenic | 40.0% | |
| !! | ATCAGGTTGGCCACTATTAT+AGG | - | chr2_4:9314382-9314401 | None:intergenic | 40.0% |
| !! | TCACAGACAGACTTTTCAAG+AGG | + | chr2_4:9314429-9314448 | Msa0313870:CDS | 40.0% |
| !! | CACAGACAGACTTTTCAAGA+GGG | + | chr2_4:9314430-9314449 | Msa0313870:CDS | 40.0% |
| !! | TTTTCAAGAGGGATGATTGC+TGG | + | chr2_4:9314441-9314460 | Msa0313870:CDS | 40.0% |
| AGCAATGGAAGAGAAAACGA+TGG | - | chr2_4:9314865-9314884 | None:intergenic | 40.0% | |
| TGCATGCAATGAAGATCTTG+TGG | - | chr2_4:9314933-9314952 | None:intergenic | 40.0% | |
| !!! | GCAACAAGCTTTTCTAGGAT+CGG | - | chr2_4:9315060-9315079 | None:intergenic | 40.0% |
| CCAATAAACAATGGAGCTAC+AGG | - | chr2_4:9315084-9315103 | None:intergenic | 40.0% | |
| CCTGTAGCTCCATTGTTTAT+TGG | + | chr2_4:9315081-9315100 | Msa0313870:CDS | 40.0% | |
| ! | CAAAAGAAGGGATGGTTTGT+TGG | - | chr2_4:9315145-9315164 | None:intergenic | 40.0% |
| !! | ACCATCCCTTCTTTTGAGAA+TGG | + | chr2_4:9315149-9315168 | Msa0313870:CDS | 40.0% |
| CAGAAGCCATTCTCAAAAGA+AGG | - | chr2_4:9315158-9315177 | None:intergenic | 40.0% | |
| ! | AGTGTCACTAATACACTGGA+AGG | - | chr2_4:9315351-9315370 | None:intergenic | 40.0% |
| CCACCCAACCATATCTATAT+AGG | - | chr2_4:9315413-9315432 | None:intergenic | 40.0% | |
| CCTATATAGATATGGTTGGG+TGG | + | chr2_4:9315410-9315429 | Msa0313870:intron | 40.0% | |
| AAGTTCGATTTCCCTCCTTA+TGG | - | chr2_4:9315446-9315465 | None:intergenic | 40.0% | |
| ATAAGGAGGGAAATCGAACT+TGG | + | chr2_4:9315445-9315464 | Msa0313870:CDS | 40.0% | |
| AGTAGTTGAACTCCTGAATG+TGG | + | chr2_4:9315616-9315635 | Msa0313870:intron | 40.0% | |
| TGAACTCCTGAATGTGGTTA+AGG | + | chr2_4:9315622-9315641 | Msa0313870:intron | 40.0% | |
| GCATTATAGTCAGGCGTTAT+AGG | - | chr2_4:9315682-9315701 | None:intergenic | 40.0% | |
| AAAGGAAAACACCTGATCTG+TGG | + | chr2_4:9315931-9315950 | Msa0313870:intron | 40.0% | |
| GCTTGTATCCATCCAAAGAT+TGG | - | chr2_4:9316025-9316044 | None:intergenic | 40.0% | |
| AGGGATTACAAAGATTGGGA+TGG | + | chr2_4:9316305-9316324 | Msa0313870:CDS | 40.0% | |
| TCAACTTTCACTCAGCAGTT+TGG | + | chr2_4:9316341-9316360 | Msa0313870:CDS | 40.0% | |
| ATGTTACTATGGGCAAAGAG+AGG | - | chr2_4:9316367-9316386 | None:intergenic | 40.0% | |
| GCAGTACATGGATGTTACTA+TGG | - | chr2_4:9316378-9316397 | None:intergenic | 40.0% | |
| AAGAAATGGCTTCACAATGC+TGG | + | chr2_4:9316485-9316504 | Msa0313870:CDS | 40.0% | |
| CCAGTAAAGGTTTACGAATG+TGG | - | chr2_4:9316609-9316628 | None:intergenic | 40.0% | |
| CCACATTCGTAAACCTTTAC+TGG | + | chr2_4:9316606-9316625 | Msa0313870:three_prime_UTR | 40.0% | |
| CTACGTGTATAGACCAGTAA+AGG | - | chr2_4:9316622-9316641 | None:intergenic | 40.0% | |
| ! | CTTTACTGGTCTATACACGT+AGG | + | chr2_4:9316620-9316639 | Msa0313870:three_prime_UTR | 40.0% |
| GAGAACGTGTTTCTCAAACT+AGG | + | chr2_4:9316762-9316781 | Msa0313870:three_prime_UTR | 40.0% | |
| GAACGTGTTTCTCAAACTAG+GGG | + | chr2_4:9316764-9316783 | Msa0313870:three_prime_UTR | 40.0% | |
| AACGTGTTTCTCAAACTAGG+GGG | + | chr2_4:9316765-9316784 | Msa0313870:three_prime_UTR | 40.0% | |
| GGATGGCTTAATAGAATCTC+TGG | - | chr2_4:9316957-9316976 | None:intergenic | 40.0% | |
| !!! | TGCCTCTTGGTTTTTTAGCA+CGG | - | chr2_4:9317025-9317044 | None:intergenic | 40.0% |
| !! | AAAACCAAGAGGCATCGTTA+CGG | + | chr2_4:9317031-9317050 | Msa0313870:three_prime_UTR | 40.0% |
| AATTGTGAGCCAGATGAGCT+GGG | - | chr2_4:9311298-9311317 | None:intergenic | 45.0% | |
| TGTTATGACACAACAACCGC+TGG | + | chr2_4:9311362-9311381 | Msa0313870:five_prime_UTR | 45.0% | |
| ATGCTGCTGCCATATAGCAA+AGG | - | chr2_4:9311480-9311499 | None:intergenic | 45.0% | |
| GAAAATGAAGTTAGGGGTGG+AGG | - | chr2_4:9311593-9311612 | None:intergenic | 45.0% | |
| GTTCCCGACAATCCAAAGTT+TGG | - | chr2_4:9311851-9311870 | None:intergenic | 45.0% | |
| !! | AGGTATCGGGTGGTATTGAT+AGG | + | chr2_4:9311995-9312014 | Msa0313870:intron | 45.0% |
| !! | GGTATCGGGTGGTATTGATA+GGG | + | chr2_4:9311996-9312015 | Msa0313870:intron | 45.0% |
| ACCATTTGGCCACAACAGTA+GGG | + | chr2_4:9312190-9312209 | Msa0313870:intron | 45.0% | |
| !! | TCTCTGAGGAGCTTTTTCTC+TGG | + | chr2_4:9312274-9312293 | Msa0313870:intron | 45.0% |
| !! | CTCTGAGGAGCTTTTTCTCT+GGG | + | chr2_4:9312275-9312294 | Msa0313870:intron | 45.0% |
| !! | TGTAATCATAGGTGTCGGTG+TGG | + | chr2_4:9312451-9312470 | Msa0313870:intron | 45.0% |
| !! | GTAATCATAGGTGTCGGTGT+GGG | + | chr2_4:9312452-9312471 | Msa0313870:intron | 45.0% |
| ATACACTCCTAGGTGTGTCA+CGG | - | chr2_4:9312498-9312517 | None:intergenic | 45.0% | |
| ! | GTTGCTGTTACGTGACAGAA+AGG | + | chr2_4:9312580-9312599 | Msa0313870:intron | 45.0% |
| !! | GTCCCACCATTTTGGTGTAT+TGG | - | chr2_4:9312664-9312683 | None:intergenic | 45.0% |
| ! | AAAAAGGGGTCCCACCATTT+TGG | - | chr2_4:9312672-9312691 | None:intergenic | 45.0% |
| !! | AAATGGTGGGACCCCTTTTT+CGG | + | chr2_4:9312672-9312691 | Msa0313870:intron | 45.0% |
| ! | CTAAAGCTCTGACATACGCA+GGG | - | chr2_4:9312699-9312718 | None:intergenic | 45.0% |
| ! | ACTAAAGCTCTGACATACGC+AGG | - | chr2_4:9312700-9312719 | None:intergenic | 45.0% |
| ATGTTGGAGAGAACTTCTGC+AGG | + | chr2_4:9312777-9312796 | Msa0313870:intron | 45.0% | |
| ACTTCTGCAGGTGCAAACAA+AGG | + | chr2_4:9312789-9312808 | Msa0313870:intron | 45.0% | |
| AGCTATGAGTACTACCACTC+AGG | + | chr2_4:9312839-9312858 | Msa0313870:CDS | 45.0% | |
| GCTATGAGTACTACCACTCA+GGG | + | chr2_4:9312840-9312859 | Msa0313870:CDS | 45.0% | |
| AAGTCTCCTGCTAAAACCAC+TGG | + | chr2_4:9312864-9312883 | Msa0313870:CDS | 45.0% | |
| AGTCTCCTGCTAAAACCACT+GGG | + | chr2_4:9312865-9312884 | Msa0313870:CDS | 45.0% | |
| !!! | AGATTCCCAGTGGTTTTAGC+AGG | - | chr2_4:9312873-9312892 | None:intergenic | 45.0% |
| CATCTCCTTGTTCTTGTCCA+TGG | + | chr2_4:9312909-9312928 | Msa0313870:CDS | 45.0% | |
| TTGTCCATGGTATCTGGTCT+AGG | + | chr2_4:9312922-9312941 | Msa0313870:CDS | 45.0% | |
| CTCATGTGAGCAAGTGTTTG+AGG | + | chr2_4:9313174-9313193 | Msa0313870:intron | 45.0% | |
| TGTACTGTTTGTACCGCAAG+CGG | + | chr2_4:9313442-9313461 | Msa0313870:intron | 45.0% | |
| !!! | GCTGGTTTTTGCTCTCCAAT+TGG | + | chr2_4:9313492-9313511 | Msa0313870:intron | 45.0% |
| TTGGGATGATTGCGTTGTTG+CGG | + | chr2_4:9313827-9313846 | Msa0313870:intron | 45.0% | |
| AAGGATATTCGCTTCAGGCT+CGG | - | chr2_4:9314294-9314313 | None:intergenic | 45.0% | |
| CCAGAAAGGATATTCGCTTC+AGG | - | chr2_4:9314299-9314318 | None:intergenic | 45.0% | |
| CCTGAAGCGAATATCCTTTC+TGG | + | chr2_4:9314296-9314315 | Msa0313870:CDS | 45.0% | |
| CAAATAGGCCTCCAAGAGAA+TGG | - | chr2_4:9314323-9314342 | None:intergenic | 45.0% | |
| !! | AGTTTGCTGGATCATCAGGT+TGG | - | chr2_4:9314395-9314414 | None:intergenic | 45.0% |
| ! | TTTTCCATCTCGCAGTTTGC+TGG | - | chr2_4:9314408-9314427 | None:intergenic | 45.0% |
| ACTTTAGCAACTCCGCATCT+TGG | + | chr2_4:9314486-9314505 | Msa0313870:CDS | 45.0% | |
| ATCGGAACACCGAACAGAAA+TGG | - | chr2_4:9315042-9315061 | None:intergenic | 45.0% | |
| CCAGTCCGACCAATAAACAA+TGG | - | chr2_4:9315093-9315112 | None:intergenic | 45.0% | |
| CCATTGTTTATTGGTCGGAC+TGG | + | chr2_4:9315090-9315109 | Msa0313870:CDS | 45.0% | |
| GCCATTCTCAAAAGAAGGGA+TGG | - | chr2_4:9315153-9315172 | None:intergenic | 45.0% | |
| ATGGCTTCTGACTGTGAAGA+TGG | + | chr2_4:9315168-9315187 | Msa0313870:CDS | 45.0% | |
| TTCGATTTCCCTCCTTATGG+AGG | - | chr2_4:9315443-9315462 | None:intergenic | 45.0% | |
| GAGGGAAATCGAACTTGGTA+AGG | + | chr2_4:9315450-9315469 | Msa0313870:CDS | 45.0% | |
| TACACGCCTTAACCACATTC+AGG | - | chr2_4:9315631-9315650 | None:intergenic | 45.0% | |
| AACACCTGATCTGTGGAAGT+TGG | + | chr2_4:9315938-9315957 | Msa0313870:intron | 45.0% | |
| ACACCTGATCTGTGGAAGTT+GGG | + | chr2_4:9315939-9315958 | Msa0313870:intron | 45.0% | |
| TATCCATCCAAAGATTGGCG+TGG | - | chr2_4:9316020-9316039 | None:intergenic | 45.0% | |
| ! | AGTGTCAGGAGAAGAGTGTA+AGG | + | chr2_4:9316704-9316723 | Msa0313870:three_prime_UTR | 45.0% |
| GTCCGTGCTAAAAAACCAAG+AGG | + | chr2_4:9317020-9317039 | Msa0313870:three_prime_UTR | 45.0% | |
| !! | AAACCAAGAGGCATCGTTAC+GGG | + | chr2_4:9317032-9317051 | Msa0313870:three_prime_UTR | 45.0% |
| GTTACGGGCACAAGATCATT+TGG | + | chr2_4:9317047-9317066 | Msa0313870:three_prime_UTR | 45.0% | |
| !!! | ATTTTAATATATAGTTATTT+AGG | + | chr2_4:9312040-9312059 | Msa0313870:intron | 5.0% |
| !! | TAATATTAATATTAAATATC+TGG | + | chr2_4:9315548-9315567 | Msa0313870:intron | 5.0% |
| CAATTGTGAGCCAGATGAGC+TGG | - | chr2_4:9311299-9311318 | None:intergenic | 50.0% | |
| TGGAGGAAGAAGAGCAACAG+GGG | - | chr2_4:9311576-9311595 | None:intergenic | 50.0% | |
| GTGGAGGAAGAAGAGCAACA+GGG | - | chr2_4:9311577-9311596 | None:intergenic | 50.0% | |
| GACCATTTGGCCACAACAGT+AGG | + | chr2_4:9312189-9312208 | Msa0313870:intron | 50.0% | |
| CCATTTGGCCACAACAGTAG+GGG | + | chr2_4:9312191-9312210 | Msa0313870:intron | 50.0% | |
| CATTTGGCCACAACAGTAGG+GGG | + | chr2_4:9312192-9312211 | Msa0313870:intron | 50.0% | |
| CTGAATTCCCCCTACTGTTG+TGG | - | chr2_4:9312202-9312221 | None:intergenic | 50.0% | |
| GTCCGGTGTCCATGTATGAT+AGG | - | chr2_4:9312380-9312399 | None:intergenic | 50.0% | |
| ATCATACATGGACACCGGAC+AGG | + | chr2_4:9312380-9312399 | Msa0313870:intron | 50.0% | |
| AGACTGTGTCGCATTCTCTC+TGG | + | chr2_4:9312527-9312546 | Msa0313870:intron | 50.0% | |
| GACTGTGTCGCATTCTCTCT+GGG | + | chr2_4:9312528-9312547 | Msa0313870:intron | 50.0% | |
| ACTGTGTCGCATTCTCTCTG+GGG | + | chr2_4:9312529-9312548 | Msa0313870:intron | 50.0% | |
| ATACGCAGGGTCCGAAAAAG+GGG | - | chr2_4:9312686-9312705 | None:intergenic | 50.0% | |
| CATACGCAGGGTCCGAAAAA+GGG | - | chr2_4:9312687-9312706 | None:intergenic | 50.0% | |
| ACATACGCAGGGTCCGAAAA+AGG | - | chr2_4:9312688-9312707 | None:intergenic | 50.0% | |
| AAGATAGTCTGAACGGCTGG+TGG | + | chr2_4:9312988-9313007 | Msa0313870:intron | 50.0% | |
| !! | CACACGGCCTTGCTTTTCTA+TGG | - | chr2_4:9313261-9313280 | None:intergenic | 50.0% |
| TGTTTGTCCAATGCAGCGCA+CGG | + | chr2_4:9314196-9314215 | Msa0313870:intron | 50.0% | |
| ! | TCCTTTCTGGCCCATTCTCT+TGG | + | chr2_4:9314309-9314328 | Msa0313870:CDS | 50.0% |
| TCCAAGAGAATGGGCCAGAA+AGG | - | chr2_4:9314313-9314332 | None:intergenic | 50.0% | |
| ! | TTTCTGGCCCATTCTCTTGG+AGG | + | chr2_4:9314312-9314331 | Msa0313870:CDS | 50.0% |
| !! | TCGCAGTTTGCTGGATCATC+AGG | - | chr2_4:9314399-9314418 | None:intergenic | 50.0% |
| TGATCCAGCAAACTGCGAGA+TGG | + | chr2_4:9314401-9314420 | Msa0313870:CDS | 50.0% | |
| AAGAGGGATGATTGCTGGAC+TGG | + | chr2_4:9314446-9314465 | Msa0313870:CDS | 50.0% | |
| TTCCCTCTTACGCCAAGATG+CGG | - | chr2_4:9314501-9314520 | None:intergenic | 50.0% | |
| ! | CAGGCGCAACAAGCTTTTCT+AGG | - | chr2_4:9315065-9315084 | None:intergenic | 50.0% |
| CTTCCCAACTTCCACAGATC+AGG | - | chr2_4:9315945-9315964 | None:intergenic | 50.0% | |
| CTGATCTGTGGAAGTTGGGA+AGG | + | chr2_4:9315943-9315962 | Msa0313870:intron | 50.0% | |
| AGGTCCATCGGAAGGAATTG+GGG | - | chr2_4:9316072-9316091 | None:intergenic | 50.0% | |
| GAGGTCCATCGGAAGGAATT+GGG | - | chr2_4:9316073-9316092 | None:intergenic | 50.0% | |
| TGAGGTCCATCGGAAGGAAT+TGG | - | chr2_4:9316074-9316093 | None:intergenic | 50.0% | |
| GGAAATTGAGGTCCATCGGA+AGG | - | chr2_4:9316080-9316099 | None:intergenic | 50.0% | |
| CGGAGGAAATTGAGGTCCAT+CGG | - | chr2_4:9316084-9316103 | None:intergenic | 50.0% | |
| CGATGGACCTCAATTTCCTC+CGG | + | chr2_4:9316082-9316101 | Msa0313870:CDS | 50.0% | |
| TCCTTTGCTTTCACTGCCTC+CGG | - | chr2_4:9316104-9316123 | None:intergenic | 50.0% | |
| TGGCTTCACAATGCTGGTGT+AGG | + | chr2_4:9316491-9316510 | Msa0313870:CDS | 50.0% | |
| AGCAACTTGTGGTTCCAACG+CGG | - | chr2_4:9316992-9317011 | None:intergenic | 50.0% | |
| GACTCAACAGCAGCAACTTG+TGG | - | chr2_4:9317003-9317022 | None:intergenic | 50.0% | |
| ATGGCCACTGCCTACCAATC+AGG | - | chr2_4:9311275-9311294 | None:intergenic | 55.0% | |
| GGAGGAAGAAGAGCAACAGG+GGG | - | chr2_4:9311575-9311594 | None:intergenic | 55.0% | |
| GGTGGAGGAAGAAGAGCAAC+AGG | - | chr2_4:9311578-9311597 | None:intergenic | 55.0% | |
| CTGTTAGAGCTCCGGTTCAG+CGG | - | chr2_4:9311879-9311898 | None:intergenic | 55.0% | |
| CCCCTACTGTTGTGGCCAAA+TGG | - | chr2_4:9312194-9312213 | None:intergenic | 55.0% | |
| CACCGGACAGGACACAAACA+CGG | + | chr2_4:9312392-9312411 | Msa0313870:intron | 55.0% | |
| GTCCGTGTTTGTGTCCTGTC+CGG | - | chr2_4:9312397-9312416 | None:intergenic | 55.0% | |
| !! | ATAGGTGTCGGTGTGGGACA+CGG | + | chr2_4:9312458-9312477 | Msa0313870:intron | 55.0% |
| TCCTAGGTGTGTCACGGTGT+CGG | - | chr2_4:9312492-9312511 | None:intergenic | 55.0% | |
| CTGTGTCGCATTCTCTCTGG+GGG | + | chr2_4:9312530-9312549 | Msa0313870:intron | 55.0% | |
| TGTGTCGCATTCTCTCTGGG+GGG | + | chr2_4:9312531-9312550 | Msa0313870:intron | 55.0% | |
| ! | ACATCGGGCTGCCCTTTTGT+AGG | + | chr2_4:9312720-9312739 | Msa0313870:intron | 55.0% |
| AGCAGGAGACTTTCCCTGAG+TGG | - | chr2_4:9312856-9312875 | None:intergenic | 55.0% | |
| ACTGATACAGCCCAGGTGAC+TGG | + | chr2_4:9313533-9313552 | Msa0313870:intron | 55.0% | |
| CCGCATAACTCCAGTCACCT+GGG | - | chr2_4:9313546-9313565 | None:intergenic | 55.0% | |
| CCCAGGTGACTGGAGTTATG+CGG | + | chr2_4:9313543-9313562 | Msa0313870:CDS | 55.0% | |
| TCCGCATAACTCCAGTCACC+TGG | - | chr2_4:9313547-9313566 | None:intergenic | 55.0% | |
| AGGTGACTGGAGTTATGCGG+AGG | + | chr2_4:9313546-9313565 | Msa0313870:CDS | 55.0% | |
| TTCAGAACCGTGCGCTGCAT+TGG | - | chr2_4:9314206-9314225 | None:intergenic | 55.0% | |
| ACTCCGCATCTTGGCGTAAG+AGG | + | chr2_4:9314495-9314514 | Msa0313870:CDS | 55.0% | |
| CTCCGCATCTTGGCGTAAGA+GGG | + | chr2_4:9314496-9314515 | Msa0313870:CDS | 55.0% | |
| AAGATTGGCGTGGAGGCTGT+CGG | - | chr2_4:9316010-9316029 | None:intergenic | 55.0% | |
| ACAGCCTCCACGCCAATCTT+TGG | + | chr2_4:9316010-9316029 | Msa0313870:intron | 55.0% | |
| CCATCCAAAGATTGGCGTGG+AGG | - | chr2_4:9316017-9316036 | None:intergenic | 55.0% | |
| CCTCCACGCCAATCTTTGGA+TGG | + | chr2_4:9316014-9316033 | Msa0313870:CDS | 55.0% | |
| TGTCCCCCAATTCCTTCCGA+TGG | + | chr2_4:9316065-9316084 | Msa0313870:CDS | 55.0% | |
| GGTCCATCGGAAGGAATTGG+GGG | - | chr2_4:9316071-9316090 | None:intergenic | 55.0% | |
| TGGACCTCAATTTCCTCCGG+AGG | + | chr2_4:9316085-9316104 | Msa0313870:CDS | 55.0% | |
| ACTGCCTCCGGAGGAAATTG+AGG | - | chr2_4:9316092-9316111 | None:intergenic | 55.0% | |
| TTTGCTTTCACTGCCTCCGG+AGG | - | chr2_4:9316101-9316120 | None:intergenic | 55.0% | |
| TCCGGAGGCAGTGAAAGCAA+AGG | + | chr2_4:9316100-9316119 | Msa0313870:CDS | 55.0% | |
| CGCGGCCAATCTTTGTTGGA+TGG | - | chr2_4:9316974-9316993 | None:intergenic | 55.0% | |
| CCAACGCGGCCAATCTTTGT+TGG | - | chr2_4:9316978-9316997 | None:intergenic | 55.0% | |
| ! | CCAACAAAGATTGGCCGCGT+TGG | + | chr2_4:9316975-9316994 | Msa0313870:three_prime_UTR | 55.0% |
| AGTGGCCATCCCAGCTCATC+TGG | + | chr2_4:9311286-9311305 | Msa0313870:five_prime_UTR | 60.0% | |
| GTGAGCCAGATGAGCTGGGA+TGG | - | chr2_4:9311294-9311313 | None:intergenic | 60.0% | |
| AGAGCAACAGGGGGAGGATG+AGG | - | chr2_4:9311566-9311585 | None:intergenic | 60.0% | |
| GGAAGAAGAGCAACAGGGGG+AGG | - | chr2_4:9311572-9311591 | None:intergenic | 60.0% | |
| GGGAACCCTTTCCGCTGAAC+CGG | + | chr2_4:9311865-9311884 | Msa0313870:intron | 60.0% | |
| GAGCTCCGGTTCAGCGGAAA+GGG | - | chr2_4:9311873-9311892 | None:intergenic | 60.0% | |
| AGAGCTCCGGTTCAGCGGAA+AGG | - | chr2_4:9311874-9311893 | None:intergenic | 60.0% | |
| TCCGACACCGTGACACACCT+AGG | + | chr2_4:9312488-9312507 | Msa0313870:intron | 60.0% | |
| ! | GTGTCGCATTCTCTCTGGGG+GGG | + | chr2_4:9312532-9312551 | Msa0313870:intron | 60.0% |
| ! | TGTCGCATTCTCTCTGGGGG+GGG | + | chr2_4:9312533-9312552 | Msa0313870:intron | 60.0% |
| GAAAAGCAAGGCCGTGTGCG+TGG | + | chr2_4:9313263-9313282 | Msa0313870:intron | 60.0% | |
| TTTGTACCGCAAGCGGTGCC+TGG | + | chr2_4:9313449-9313468 | Msa0313870:intron | 60.0% | |
| ! | CAAATGCCAGGCACCGCTTG+CGG | - | chr2_4:9313458-9313477 | None:intergenic | 60.0% |
| !! | GCAGCGCACGGTTCTGAATC+AGG | + | chr2_4:9314208-9314227 | Msa0313870:intron | 60.0% |
| GCGCACGTCCTCCATAAGGA+GGG | + | chr2_4:9315432-9315451 | Msa0313870:CDS | 60.0% | |
| GTGCCCGTAACGATGCCTCT+TGG | - | chr2_4:9317038-9317057 | None:intergenic | 60.0% | |
| ! | GTCGCATTCTCTCTGGGGGG+GGG | + | chr2_4:9312534-9312553 | Msa0313870:intron | 65.0% |
| ! | TCGCATTCTCTCTGGGGGGG+GGG | + | chr2_4:9312535-9312554 | Msa0313870:intron | 65.0% |
| GGTGGCGCACGTCCTCCATA+AGG | + | chr2_4:9315428-9315447 | Msa0313870:CDS | 65.0% | |
| GGCGCACGTCCTCCATAAGG+AGG | + | chr2_4:9315431-9315450 | Msa0313870:CDS | 65.0% | |
| ! | CGCATTCTCTCTGGGGGGGG+GGG | + | chr2_4:9312536-9312555 | Msa0313870:intron | 70.0% |
| ! | GCATTCTCTCTGGGGGGGGG+GGG | + | chr2_4:9312537-9312556 | Msa0313870:intron | 70.0% |
| ! | CATTCTCTCTGGGGGGGGGG+GGG | + | chr2_4:9312538-9312557 | Msa0313870:intron | 70.0% |
| ! | ATTCTCTCTGGGGGGGGGGG+GGG | + | chr2_4:9312539-9312558 | Msa0313870:intron | 70.0% |
| GGGGGGGGGTCTTGGCGCAA+CGG | + | chr2_4:9312553-9312572 | Msa0313870:intron | 75.0% | |
| ! | TCTGGGGGGGGGGGGGGTCT+TGG | + | chr2_4:9312545-9312564 | Msa0313870:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9311270 | 9317087 | 9311270 | ID=Msa0313870;Name=Msa0313870 |
| chr2_4 | mRNA | 9311270 | 9317087 | 9311270 | ID=Msa0313870-mRNA-1;Parent=Msa0313870;Name=Msa0313870-mRNA-1;_AED=0.17;_eAED=0.17;_QI=217|1|1|1|0.9|0.90|11|507|438 |
| chr2_4 | exon | 9311270 | 9311625 | 9311270 | ID=Msa0313870-mRNA-1:exon:3588;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9312799 | 9312943 | 9312799 | ID=Msa0313870-mRNA-1:exon:3589;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9313543 | 9313610 | 9313543 | ID=Msa0313870-mRNA-1:exon:3590;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9314097 | 9314167 | 9314097 | ID=Msa0313870-mRNA-1:exon:3591;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9314267 | 9314527 | 9314267 | ID=Msa0313870-mRNA-1:exon:3592;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9315036 | 9315199 | 9315036 | ID=Msa0313870-mRNA-1:exon:3593;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9315288 | 9315343 | 9315288 | ID=Msa0313870-mRNA-1:exon:3594;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9315419 | 9315471 | 9315419 | ID=Msa0313870-mRNA-1:exon:3595;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9316014 | 9316173 | 9316014 | ID=Msa0313870-mRNA-1:exon:3596;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9316293 | 9316390 | 9316293 | ID=Msa0313870-mRNA-1:exon:3597;Parent=Msa0313870-mRNA-1 |
| chr2_4 | exon | 9316479 | 9317087 | 9316479 | ID=Msa0313870-mRNA-1:exon:3598;Parent=Msa0313870-mRNA-1 |
| chr2_4 | five_prime_UTR | 9311270 | 9311486 | 9311270 | ID=Msa0313870-mRNA-1:five_prime_utr;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9311487 | 9311625 | 9311487 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9312799 | 9312943 | 9312799 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9313543 | 9313610 | 9313543 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9314097 | 9314167 | 9314097 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9314267 | 9314527 | 9314267 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9315036 | 9315199 | 9315036 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9315288 | 9315343 | 9315288 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9315419 | 9315471 | 9315419 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9316014 | 9316173 | 9316014 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9316293 | 9316390 | 9316293 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | CDS | 9316479 | 9316580 | 9316479 | ID=Msa0313870-mRNA-1:cds;Parent=Msa0313870-mRNA-1 |
| chr2_4 | three_prime_UTR | 9316581 | 9317087 | 9316581 | ID=Msa0313870-mRNA-1:three_prime_utr;Parent=Msa0313870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
