AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317430 MtrunA17_Chr2g0290711 96.199 342 13 0 1 342 1 342 0.0 682
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317430 AT5G47770.1 78.006 341 75 0 2 342 44 384 0.0 571
Msa0317430 AT4G17190.1 77.193 342 78 0 1 342 1 342 0.0 561
Msa0317430 AT4G17190.3 79.730 296 60 0 47 342 10 305 0.0 504
Msa0317430 AT4G17190.2 80.162 247 49 0 96 342 1 247 2.93e-151 425

Find 143 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACCTTTCCAATTGTTTC+AGG 0.147131 2_4:-15202909 None:intergenic
TCCTAAAATTGCATTATTAT+TGG 0.151078 2_4:-15199555 None:intergenic
TCTCATTCAGGATGATTATT+TGG 0.171673 2_4:+15202872 Msa0317430:intron
TTGATCTGCTGTTTAATTAT+TGG 0.186821 2_4:+15204120 Msa0317430:three_prime_UTR
CATTTAAATGTTGTTGGTTA+TGG 0.220088 2_4:+15204523 Msa0317430:three_prime_UTR
TGATCTGCTGTTTAATTATT+GGG 0.234251 2_4:+15204121 Msa0317430:three_prime_UTR
AAAATAATTTATTATGTCTT+TGG 0.239472 2_4:+15199456 Msa0317430:five_prime_UTR
CCTAAAATTGCATTATTATT+GGG 0.255475 2_4:-15199554 None:intergenic
CGAGATTAAGCTCGTTATAA+AGG 0.264877 2_4:-15203234 None:intergenic
TCCTAAGGATACGCGGAATA+TGG 0.280724 2_4:-15201378 None:intergenic
TGTGAAAGAAACATAGAAAA+TGG 0.282768 2_4:+15203988 Msa0317430:three_prime_UTR
TCTTGTTCTTGACGACATTA+TGG 0.285569 2_4:+15201175 Msa0317430:CDS
TGTAAACTGTCTTGTGATAC+TGG 0.291626 2_4:+15203878 Msa0317430:three_prime_UTR
AGCAGTATTGAAGTCCTTCT+TGG 0.310069 2_4:+15203680 Msa0317430:CDS
TCACAGTGATAAGGTGTATT+TGG 0.310978 2_4:-15201605 None:intergenic
AAAATGGATAGAGGAAATAA+AGG 0.317304 2_4:+15204004 Msa0317430:three_prime_UTR
AAGTTTAACCAATCATATTA+AGG 0.319300 2_4:-15204069 None:intergenic
TGTGGTGAACAGGAGAACTA+TGG 0.319745 2_4:+15203175 Msa0317430:intron
TTCTCTCTCATTTCCATCAA+TGG 0.358198 2_4:+15199632 Msa0317430:exon
GGTAGTTGCCTTAATATGAT+TGG 0.367346 2_4:+15204061 Msa0317430:three_prime_UTR
ATAATATAGCGAACAGTTGC+AGG 0.367448 2_4:+15204347 Msa0317430:three_prime_UTR
TTGACTATAGCAACATTTGC+AGG 0.368701 2_4:-15203208 None:intergenic
TTGAAGACTTTAAGTGCTCT+TGG 0.374180 2_4:+15203019 Msa0317430:CDS
TACTGCTTGAACTGCACTGC+TGG 0.374612 2_4:-15203664 None:intergenic
TCGGTACATTTAAATGTTGT+TGG 0.375382 2_4:+15204517 Msa0317430:three_prime_UTR
AACAATGATATACCCGAGTT+TGG 0.378439 2_4:+15204736 Msa0317430:three_prime_UTR
CTCTTGGTTGGTGCATTGAA+TGG 0.402536 2_4:+15201024 Msa0317430:CDS
CAAAATTCCCAACATCATCT+TGG 0.403595 2_4:-15204555 None:intergenic
AAATGGATAGAGGAAATAAA+GGG 0.411938 2_4:+15204005 Msa0317430:three_prime_UTR
ATGGCTGACCACGACGTGTA+TGG 0.415175 2_4:-15201205 None:intergenic
CCGGTGAGTGTGGTTGGCGT+GGG 0.418108 2_4:-15199488 None:intergenic
GATGATTATTTGGATTGCTT+TGG 0.419545 2_4:+15202882 Msa0317430:CDS
GTTGAGTTTCAAACTGCTGC+TGG 0.420249 2_4:+15201535 Msa0317430:CDS
CAGAAGTAGATTTCCCTTGT+AGG 0.422258 2_4:+15203720 Msa0317430:exon
ATAGCAACATTTGCAGGATC+TGG 0.426079 2_4:-15203202 None:intergenic
GTCTGAGGATTCTCGTCAAT+GGG 0.426460 2_4:+15199731 Msa0317430:CDS
TACTTAAGCCTTCCCCTGCT+CGG 0.432552 2_4:-15204475 None:intergenic
CAGATTTACACAAGTGCAGC+AGG 0.434422 2_4:+15204432 Msa0317430:three_prime_UTR
TTGCAATGAAGAACAAAAGA+AGG 0.435483 2_4:+15203065 Msa0317430:CDS
ACTAATGGCTGGTGAAGATC+TGG 0.438016 2_4:+15202669 Msa0317430:CDS
TTTATGTACTCACAGTGATA+AGG 0.440398 2_4:-15201614 None:intergenic
TCCAACTCGAAATCAACATT+TGG 0.440685 2_4:-15204679 None:intergenic
ATCAATAATGGCTCCAAACT+CGG 0.443371 2_4:-15204749 None:intergenic
TGAAGACTTTAAGTGCTCTT+GGG 0.443835 2_4:+15203020 Msa0317430:CDS
TAGCGAACAGTTGCAGGAAC+AGG 0.445801 2_4:+15204353 Msa0317430:three_prime_UTR
GTCAGCTCCACACAGAAAAC+AGG 0.449743 2_4:-15203789 None:intergenic
TCCTCAGACCACTCGAAAGC+AGG 0.450781 2_4:-15199717 None:intergenic
TTTGGTGATCCTGAAACAAT+TGG 0.452410 2_4:+15202900 Msa0317430:CDS
TACACAAGTGCAGCAGGGTC+AGG 0.453632 2_4:+15204438 Msa0317430:three_prime_UTR
GCCGGTGAGTGTGGTTGGCG+TGG 0.454913 2_4:-15199489 None:intergenic
TCAAGAAGTTCAACATAATA+CGG 0.457431 2_4:-15201418 None:intergenic
GATGAAGTAAATAGAGAAGA+AGG 0.459696 2_4:+15204311 Msa0317430:three_prime_UTR
GAGATTAAGCTCGTTATAAA+GGG 0.459820 2_4:-15203233 None:intergenic
AAAGAGAGATGCTGCACAGC+CGG 0.466199 2_4:-15199507 None:intergenic
TTCCCTTGAAGTGTTTCCTA+AGG 0.467529 2_4:-15201393 None:intergenic
GACTTGAGATCTGCCATTGA+TGG 0.470370 2_4:-15199645 None:intergenic
CATATTAAGGCAACTACCAT+TGG 0.471122 2_4:-15204056 None:intergenic
AAAGAACATTCTTGTTGAGA+TGG 0.473997 2_4:+15202708 Msa0317430:CDS
ACCATATTCCGCGTATCCTT+AGG 0.482141 2_4:+15201377 Msa0317430:CDS
TGCAGCAGGGTCAGGTTTGG+TGG 0.484303 2_4:+15204446 Msa0317430:three_prime_UTR
GGTCTGAGGATTCTCGTCAA+TGG 0.485094 2_4:+15199730 Msa0317430:CDS
ACATTGTTTGAAGATGCAAT+AGG 0.485380 2_4:+15203753 Msa0317430:three_prime_UTR
GAAATGAGAGAGAAAGAAAG+AGG 0.487302 2_4:-15199623 None:intergenic
TATCCTTAGGAAACACTTCA+AGG 0.492202 2_4:+15201390 Msa0317430:CDS
TCTTGGTTGGTGCATTGAAT+GGG 0.494224 2_4:+15201025 Msa0317430:CDS
GAAACATAGAAAATGGATAG+AGG 0.503294 2_4:+15203995 Msa0317430:three_prime_UTR
ATTATTGGGAGAATAAATAG+AGG 0.504351 2_4:-15199540 None:intergenic
TCCAAGCTAGTGCTCTTGGT+TGG 0.504745 2_4:+15201012 Msa0317430:CDS
TCAATAATGGCTCCAAACTC+GGG 0.505745 2_4:-15204748 None:intergenic
AACAGTTGCAGGAACAGGAT+TGG 0.506063 2_4:+15204358 Msa0317430:three_prime_UTR
ATGTTGGTATTTGTCCTACA+AGG 0.508631 2_4:-15203734 None:intergenic
TGAGAGAGAAAGAAAGAGGG+TGG 0.509584 2_4:-15199619 None:intergenic
ATTCTCGTCAATGGGTCGAT+AGG 0.513696 2_4:+15199739 Msa0317430:CDS
AAAATAGTCTACAACCCTCT+TGG 0.515575 2_4:-15204704 None:intergenic
GGAATGATTGCTGCGAATGA+TGG 0.516786 2_4:+15201340 Msa0317430:CDS
ACCACTCGAAAGCAGGGTCA+TGG 0.517327 2_4:-15199710 None:intergenic
GCACAGCCGGTGAGTGTGGT+TGG 0.517522 2_4:-15199494 None:intergenic
GAATGTATAGGGTGCATTTG+CGG 0.518977 2_4:+15203590 Msa0317430:intron
TGGCTGACCACGACGTGTAT+GGG 0.519560 2_4:-15201204 None:intergenic
AAGAACATTCTTGTTGAGAT+GGG 0.521436 2_4:+15202709 Msa0317430:CDS
AAGTGCAGCAGGGTCAGGTT+TGG 0.526753 2_4:+15204443 Msa0317430:three_prime_UTR
TCCAAATGTTGATTTCGAGT+TGG 0.529065 2_4:+15204678 Msa0317430:three_prime_UTR
CCCTGCTTTCGAGTGGTCTG+AGG 0.529792 2_4:+15199716 Msa0317430:CDS
CCCGTGTGTGTGTCGGATAT+AGG 0.529858 2_4:+15204604 Msa0317430:three_prime_UTR
CCGATTGTTAAAAGAAGGAC+AGG 0.537482 2_4:+15200968 Msa0317430:CDS
GTCGGATATAGGTGAAGCAT+TGG 0.538354 2_4:+15204615 Msa0317430:three_prime_UTR
AGCTACCGATTGTTAAAAGA+AGG 0.538591 2_4:+15200963 Msa0317430:CDS
CCCACGCCAACCACACTCAC+CGG 0.539111 2_4:+15199488 Msa0317430:five_prime_UTR
ATTGCATCTTCAAACAATGT+TGG 0.539226 2_4:-15203750 None:intergenic
TTCTCGTCAATGGGTCGATA+GGG 0.539611 2_4:+15199740 Msa0317430:CDS
GTTGCAGGAACAGGATTGGC+AGG 0.540388 2_4:+15204362 Msa0317430:three_prime_UTR
CACGTCGTGGTCAGCCATGT+TGG 0.540988 2_4:+15201210 Msa0317430:CDS
GTGATAAGGTGTATTTGGAC+AGG 0.546327 2_4:-15201600 None:intergenic
TCGGATATAGGTGAAGCATT+GGG 0.547463 2_4:+15204616 Msa0317430:three_prime_UTR
ACCAACCAAGAGCACTAGCT+TGG 0.550761 2_4:-15201013 None:intergenic
AAATGAGAGAGAAAGAAAGA+GGG 0.551482 2_4:-15199622 None:intergenic
ACCTATATCCGACACACACA+CGG 0.552322 2_4:-15204605 None:intergenic
TGTGCATCCAAGATGATGTT+GGG 0.553063 2_4:+15204548 Msa0317430:three_prime_UTR
TGGGAGAATAAATAGAGGAA+TGG 0.562637 2_4:-15199535 None:intergenic
GGTTGCATGTGCATTACTAA+TGG 0.564966 2_4:+15202654 Msa0317430:intron
ATGTTGGTTTAGAGTACCCA+AGG 0.567818 2_4:+15201226 Msa0317430:CDS
GTGGTGAACAGGAGAACTAT+GGG 0.570700 2_4:+15203176 Msa0317430:intron
TGCTGCACAGCCGGTGAGTG+TGG 0.572823 2_4:-15199498 None:intergenic
TTGGGTGGTTGTGAAAGCAT+TGG 0.575145 2_4:+15203038 Msa0317430:CDS
TTATAACGAGCTTAATCTCG+AGG 0.575890 2_4:+15203237 Msa0317430:CDS
TCCATGACCCTGCTTTCGAG+TGG 0.576232 2_4:+15199709 Msa0317430:CDS
TTTCGAGTTGGATGCCAAGA+GGG 0.578061 2_4:+15204690 Msa0317430:three_prime_UTR
CCTATATCCGACACACACAC+GGG 0.579419 2_4:-15204604 None:intergenic
GCATGTGCATTACTAATGGC+TGG 0.579792 2_4:+15202658 Msa0317430:CDS
AGCAGGGTCATGGAGAAGCT+CGG 0.583918 2_4:-15199700 None:intergenic
GTCAAGCCCCGTGTGTGTGT+CGG 0.584280 2_4:+15204597 Msa0317430:three_prime_UTR
AGACTTTAAGTGCTCTTGGG+TGG 0.587887 2_4:+15203023 Msa0317430:CDS
CCTCAGACCACTCGAAAGCA+GGG 0.588733 2_4:-15199716 None:intergenic
ACTGCTTGAACTGCACTGCT+GGG 0.591941 2_4:-15203663 None:intergenic
GTTTGTCACAAGCTATTCAG+TGG 0.598148 2_4:+15204638 Msa0317430:three_prime_UTR
CGGTGAGTGTGGTTGGCGTG+GGG 0.600773 2_4:-15199487 None:intergenic
ACTTCTTGATTTATTCAATG+AGG 0.600835 2_4:+15201432 Msa0317430:CDS
AGAGTAGACATTCAAGAATG+TGG 0.605616 2_4:-15199667 None:intergenic
AAGATGCAATAGGAGCTAGC+TGG 0.605998 2_4:+15203763 Msa0317430:three_prime_UTR
TGTTGGTATTTGTCCTACAA+GGG 0.609648 2_4:-15203733 None:intergenic
ATGTGCATCCAAGATGATGT+TGG 0.612864 2_4:+15204547 Msa0317430:three_prime_UTR
TTATAGTAGCAAACTTCCAA+TGG 0.615369 2_4:+15204040 Msa0317430:three_prime_UTR
TTTGTCACAAGCTATTCAGT+GGG 0.618720 2_4:+15204639 Msa0317430:three_prime_UTR
TTGTGAAAACAAGGACGATG+TGG 0.619742 2_4:+15204575 Msa0317430:three_prime_UTR
TCAAGTTCAGAGATAGACCA+TGG 0.620633 2_4:+15203958 Msa0317430:three_prime_UTR
GATTTGATCACCACACTGGA+AGG 0.625103 2_4:+15201568 Msa0317430:CDS
ATCCTTAGGAAACACTTCAA+GGG 0.625790 2_4:+15201391 Msa0317430:CDS
TGTCGATAACTGACAGTCCA+CGG 0.626037 2_4:-15200941 None:intergenic
TCTTGGCTAAAATTTACAAG+AGG 0.627016 2_4:+15203697 Msa0317430:CDS
GAATGTTCTTTACATCAACA+TGG 0.628388 2_4:-15202696 None:intergenic
TTCTTTCACAGGCAAAACCA+TGG 0.631764 2_4:-15203975 None:intergenic
GATCGATTTGATCACCACAC+TGG 0.647023 2_4:+15201564 Msa0317430:CDS
ATTTCGAGTTGGATGCCAAG+AGG 0.662942 2_4:+15204689 Msa0317430:three_prime_UTR
AGATTTACACAAGTGCAGCA+GGG 0.679813 2_4:+15204433 Msa0317430:three_prime_UTR
TGATCCTGAAACAATTGGAA+AGG 0.681979 2_4:+15202905 Msa0317430:CDS
TTGGGTACTCTAAACCAACA+TGG 0.682317 2_4:-15201224 None:intergenic
GACAACTCCCATACACGTCG+TGG 0.685129 2_4:+15201197 Msa0317430:CDS
CTATATCCGACACACACACG+GGG 0.691294 2_4:-15204603 None:intergenic
ATGGCAGGGAAGCTGAACCG+TGG 0.698541 2_4:+15200924 Msa0317430:intron
AAGTGTTTCCTAAGGATACG+CGG 0.701381 2_4:-15201385 None:intergenic
GCTGGGATGAGCTTCAATCG+AGG 0.703794 2_4:-15203646 None:intergenic
TCTTGTACTGAACAATACGC+CGG 0.718334 2_4:-15202106 None:intergenic
GGGAAGGCTTAAGTACAACG+TGG 0.767317 2_4:+15204483 Msa0317430:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTTATTATGTCTT+TGG + chr2_4:15199456-15199475 Msa0317430:five_prime_UTR 10.0%
!!! TTATTTTGATTAAATTTAAG+TGG + chr2_4:15199935-15199954 Msa0317430:intron 10.0%
!!! TATTTTGATTAAATTTAAGT+GGG + chr2_4:15199936-15199955 Msa0317430:intron 10.0%
!!! AAGTTACTTTTTTTTATTAA+TGG + chr2_4:15202412-15202431 Msa0317430:intron 10.0%
!!! TTTAATGGTTTTATATTTTG+TGG + chr2_4:15200212-15200231 Msa0317430:intron 15.0%
!!! ATGTATGATTTTGTTTATTA+TGG + chr2_4:15200367-15200386 Msa0317430:intron 15.0%
!! ATTTATCTTATGTATACATT+TGG + chr2_4:15200529-15200548 Msa0317430:intron 15.0%
!!! ATATTATTTTTGTTGTTGTA+GGG + chr2_4:15201279-15201298 Msa0317430:intron 15.0%
!!! TTTTATGTTATTGTTAGTAT+TGG + chr2_4:15201699-15201718 Msa0317430:intron 15.0%
!! ATATAAAAAATGAAGATGAA+AGG - chr2_4:15202349-15202368 None:intergenic 15.0%
!! AAAATAAGTAATTTCGTTAA+GGG - chr2_4:15202535-15202554 None:intergenic 15.0%
!! AAAAATAAGTAATTTCGTTA+AGG - chr2_4:15202536-15202555 None:intergenic 15.0%
!! AAAGATAAATAACATAAAAC+AGG - chr2_4:15202610-15202629 None:intergenic 15.0%
!!! ATTTTTTTTTCCTTCTAAAA+TGG - chr2_4:15203303-15203322 None:intergenic 15.0%
!!! TATTTGAAATTTGAATGTAT+AGG + chr2_4:15203578-15203597 Msa0317430:intron 15.0%
!!! ATTTGAAATTTGAATGTATA+GGG + chr2_4:15203579-15203598 Msa0317430:intron 15.0%
!! CCTAAAATTGCATTATTATT+GGG - chr2_4:15199557-15199576 None:intergenic 20.0%
!! TCCTAAAATTGCATTATTAT+TGG - chr2_4:15199558-15199577 None:intergenic 20.0%
!!! CTCTTATCTTTTTTCATAAT+TGG + chr2_4:15199780-15199799 Msa0317430:intron 20.0%
!!! TTTTTTGCTTGTTTTTGTAA+TGG + chr2_4:15199853-15199872 Msa0317430:intron 20.0%
!! AAGATTTATCATATACTTGT+AGG - chr2_4:15200313-15200332 None:intergenic 20.0%
!!! ATTTTCATGAAAACCTAAAA+GGG - chr2_4:15200492-15200511 None:intergenic 20.0%
!! TGTATACATAAGATAAATCA+GGG - chr2_4:15200527-15200546 None:intergenic 20.0%
!! ATGTATACATAAGATAAATC+AGG - chr2_4:15200528-15200547 None:intergenic 20.0%
!! ATTTGTATGTTTCAATGAAA+TGG - chr2_4:15200558-15200577 None:intergenic 20.0%
!!! ATAAAGATGCATTTTAACTA+TGG + chr2_4:15200905-15200924 Msa0317430:intron 20.0%
!!! GATATTATTTTTGTTGTTGT+AGG + chr2_4:15201278-15201297 Msa0317430:intron 20.0%
!! CTACATCATAGAATAATTAA+AGG - chr2_4:15201317-15201336 None:intergenic 20.0%
!! CTTTAATTATTCTATGATGT+AGG + chr2_4:15201315-15201334 Msa0317430:intron 20.0%
!! AACCTAAAAGAAAATTAACA+CGG - chr2_4:15201518-15201537 None:intergenic 20.0%
!!! AATAGTTTTTTCTTTTTGCT+TGG - chr2_4:15201727-15201746 None:intergenic 20.0%
!!! TTTTCTTTTAGATACATACT+TGG + chr2_4:15201803-15201822 Msa0317430:intron 20.0%
!!! TTTTGTTGTTTTCCTTATTT+CGG + chr2_4:15202180-15202199 Msa0317430:intron 20.0%
!!! AGGTTAAACTACATTTTTAA+AGG - chr2_4:15202841-15202860 None:intergenic 20.0%
!! TGAATGAGAACAAAAAAATT+AGG - chr2_4:15202861-15202880 None:intergenic 20.0%
!!! TAATTTTTTTGTTCTCATTC+AGG + chr2_4:15202860-15202879 Msa0317430:intron 20.0%
!!! TTAACAGTTTAAAATTGTTG+CGG - chr2_4:15203353-15203372 None:intergenic 20.0%
!! GATATTCTTAAAAAAATGTG+TGG - chr2_4:15203497-15203516 None:intergenic 20.0%
!!! TTCTTAATAACTTTTCTTTC+TGG + chr2_4:15203907-15203926 Msa0317430:three_prime_UTR 20.0%
!! AAGTTTAACCAATCATATTA+AGG - chr2_4:15204072-15204091 None:intergenic 20.0%
! ATTATTGGGAGAATAAATAG+AGG - chr2_4:15199543-15199562 None:intergenic 25.0%
!! CCCAATAATAATGCAATTTT+AGG + chr2_4:15199554-15199573 Msa0317430:five_prime_UTR 25.0%
! AAAAAGATAAGAGAGATGAA+AGG - chr2_4:15199773-15199792 None:intergenic 25.0%
!! TTTTTGTAATGGCTATGTTT+TGG + chr2_4:15199864-15199883 Msa0317430:intron 25.0%
!! TTTTGTAATGGCTATGTTTT+GGG + chr2_4:15199865-15199884 Msa0317430:intron 25.0%
! ACTCAAAAAAAACATCACAT+TGG - chr2_4:15199962-15199981 None:intergenic 25.0%
!!! AATGTGATGTTTTTTTTGAG+TGG + chr2_4:15199961-15199980 Msa0317430:intron 25.0%
!! ATTTCTTCGAGATTAGTTAT+CGG + chr2_4:15200043-15200062 Msa0317430:intron 25.0%
! AAGGAAATTGAGGAATTTAA+TGG + chr2_4:15200197-15200216 Msa0317430:intron 25.0%
!!! GAATAGATTTTTGTTTGTTG+TGG + chr2_4:15200436-15200455 Msa0317430:intron 25.0%
!! GATTTTCATGAAAACCTAAA+AGG - chr2_4:15200493-15200512 None:intergenic 25.0%
!!! TTACATCATGTTTTGATTGA+CGG + chr2_4:15200694-15200713 Msa0317430:intron 25.0%
!! TGTAGTTTTTGCCAAAATTA+TGG + chr2_4:15200767-15200786 Msa0317430:intron 25.0%
! ATTCATCAATACAGGATTAT+AGG - chr2_4:15201134-15201153 None:intergenic 25.0%
!!! TTTTTTTTTCTCCAAACCTT+GGG - chr2_4:15201245-15201264 None:intergenic 25.0%
! TTTGGAGAAAAAAAAACATG+TGG + chr2_4:15201249-15201268 Msa0317430:intron 25.0%
! AATTATTCTATGATGTAGGT+TGG + chr2_4:15201319-15201338 Msa0317430:intron 25.0%
! TCAAGAAGTTCAACATAATA+CGG - chr2_4:15201421-15201440 None:intergenic 25.0%
! ACTTCTTGATTTATTCAATG+AGG + chr2_4:15201432-15201451 Msa0317430:CDS 25.0%
! ATTTCAGTGTTTGAATTATG+TGG + chr2_4:15201463-15201482 Msa0317430:intron 25.0%
! ACTGTGAGTACATAAAAAAT+AGG + chr2_4:15201621-15201640 Msa0317430:intron 25.0%
! TGTCATATAAAACTGTTATC+TGG - chr2_4:15201753-15201772 None:intergenic 25.0%
!! GAATTTTACATTGTTCTTTC+AGG - chr2_4:15201909-15201928 None:intergenic 25.0%
! AGGAAGGTAAAAAGAATAAT+AGG - chr2_4:15202135-15202154 None:intergenic 25.0%
! TGATATAACATAACACTTAC+AGG - chr2_4:15202155-15202174 None:intergenic 25.0%
! TAATTTCGTTAAGGGATTAA+AGG - chr2_4:15202527-15202546 None:intergenic 25.0%
! TTTGAAAAATCCTTTCACAA+TGG + chr2_4:15202575-15202594 Msa0317430:intron 25.0%
! AAGTCATTTCAGTTTAATCA+TGG - chr2_4:15203153-15203172 None:intergenic 25.0%
!! TAAACTGAAATGACTTTTTG+TGG + chr2_4:15203157-15203176 Msa0317430:intron 25.0%
!!! TAAATAACTGCCATTTTAGA+AGG + chr2_4:15203290-15203309 Msa0317430:intron 25.0%
! AAAATTGTTGCGGATAAAAT+TGG - chr2_4:15203343-15203362 None:intergenic 25.0%
! TGATAGTAAGATCAATGAAT+TGG - chr2_4:15203380-15203399 None:intergenic 25.0%
!!! TTTCTTACCATGTCTTTTTT+AGG + chr2_4:15203827-15203846 Msa0317430:three_prime_UTR 25.0%
!!! TTCTTACCATGTCTTTTTTA+GGG + chr2_4:15203828-15203847 Msa0317430:three_prime_UTR 25.0%
!!! ACTTTTCTTTCTGGAATATT+TGG + chr2_4:15203916-15203935 Msa0317430:three_prime_UTR 25.0%
!! ATTTTCTATGTTTCTTTCAC+AGG - chr2_4:15203989-15204008 None:intergenic 25.0%
! TGTGAAAGAAACATAGAAAA+TGG + chr2_4:15203988-15204007 Msa0317430:three_prime_UTR 25.0%
! AAAATGGATAGAGGAAATAA+AGG + chr2_4:15204004-15204023 Msa0317430:three_prime_UTR 25.0%
! AAATGGATAGAGGAAATAAA+GGG + chr2_4:15204005-15204024 Msa0317430:three_prime_UTR 25.0%
!!! GGTTAAACTTTTTTTTCACT+TGG + chr2_4:15204082-15204101 Msa0317430:three_prime_UTR 25.0%
!! TTGATCTGCTGTTTAATTAT+TGG + chr2_4:15204120-15204139 Msa0317430:three_prime_UTR 25.0%
!! TGATCTGCTGTTTAATTATT+GGG + chr2_4:15204121-15204140 Msa0317430:three_prime_UTR 25.0%
!! CATTTAAATGTTGTTGGTTA+TGG + chr2_4:15204523-15204542 Msa0317430:three_prime_UTR 25.0%
AAATGAGAGAGAAAGAAAGA+GGG - chr2_4:15199625-15199644 None:intergenic 30.0%
! AGATTAGTTATCGGTAAAGT+TGG + chr2_4:15200052-15200071 Msa0317430:intron 30.0%
TTGTGATGCTATATAGTTAG+AGG + chr2_4:15200157-15200176 Msa0317430:intron 30.0%
ATATTCAAGGAAGGAAATTG+AGG + chr2_4:15200187-15200206 Msa0317430:intron 30.0%
GAACATATTGCAAGTACAAA+GGG - chr2_4:15200413-15200432 None:intergenic 30.0%
TGAACATATTGCAAGTACAA+AGG - chr2_4:15200414-15200433 None:intergenic 30.0%
!! TGTACTTTTTATGCCCTTTT+AGG + chr2_4:15200476-15200495 Msa0317430:intron 30.0%
TCTGCAATAAATTATAGCAC+AGG - chr2_4:15200607-15200626 None:intergenic 30.0%
CTATAATTTATTGCAGATGC+TGG + chr2_4:15200610-15200629 Msa0317430:intron 30.0%
AACAAAATCATAATGTCACC+AGG - chr2_4:15200735-15200754 None:intergenic 30.0%
! GTTTTTGCCAAAATTATGGT+CGG + chr2_4:15200771-15200790 Msa0317430:intron 30.0%
!!! GTTTTTTTTTCTCCAAACCT+TGG - chr2_4:15201246-15201265 None:intergenic 30.0%
! GACCGTGTTAATTTTCTTTT+AGG + chr2_4:15201513-15201532 Msa0317430:intron 30.0%
TTTATGTACTCACAGTGATA+AGG - chr2_4:15201617-15201636 None:intergenic 30.0%
TTGTGTAGAACTTATGTTGA+TGG + chr2_4:15201651-15201670 Msa0317430:intron 30.0%
! CCAACATTTTACGTTTATCT+AGG - chr2_4:15201678-15201697 None:intergenic 30.0%
CCTAGATAAACGTAAAATGT+TGG + chr2_4:15201675-15201694 Msa0317430:intron 30.0%
TACATACTTGGCAATCTTTA+TGG + chr2_4:15201815-15201834 Msa0317430:intron 30.0%
TGTAAGATAGCAGAATAACA+AGG - chr2_4:15201857-15201876 None:intergenic 30.0%
! AATGCGTATGAGTTGAAATT+CGG + chr2_4:15201941-15201960 Msa0317430:intron 30.0%
ATAACATAACACTTACAGGA+AGG - chr2_4:15202151-15202170 None:intergenic 30.0%
!! TCTTTTAAGTGAAGACTCAT+TGG - chr2_4:15202393-15202412 None:intergenic 30.0%
GTTATATGTTCCATTGTGAA+AGG - chr2_4:15202588-15202607 None:intergenic 30.0%
! TATGTATCTCCTATTTTCAC+AGG + chr2_4:15202633-15202652 Msa0317430:intron 30.0%
GAATGTTCTTTACATCAACA+TGG - chr2_4:15202699-15202718 None:intergenic 30.0%
AAAGAACATTCTTGTTGAGA+TGG + chr2_4:15202708-15202727 Msa0317430:CDS 30.0%
AAGAACATTCTTGTTGAGAT+GGG + chr2_4:15202709-15202728 Msa0317430:CDS 30.0%
TCTCATTCAGGATGATTATT+TGG + chr2_4:15202872-15202891 Msa0317430:intron 30.0%
GATGATTATTTGGATTGCTT+TGG + chr2_4:15202882-15202901 Msa0317430:CDS 30.0%
AGTTCTTTATGAAACCAGAT+AGG + chr2_4:15202988-15203007 Msa0317430:intron 30.0%
TTGCAATGAAGAACAAAAGA+AGG + chr2_4:15203065-15203084 Msa0317430:CDS 30.0%
GAGATTAAGCTCGTTATAAA+GGG - chr2_4:15203236-15203255 None:intergenic 30.0%
AAATGGCAGTTATTTAGAAG+TGG - chr2_4:15203286-15203305 None:intergenic 30.0%
ACTATCATAGTTGTCAAATG+CGG + chr2_4:15203393-15203412 Msa0317430:intron 30.0%
!!! TTTTTTGAGAAGGCAAATGT+AGG + chr2_4:15203448-15203467 Msa0317430:intron 30.0%
!! CTTGTAAATTTTAGCCAAGA+AGG - chr2_4:15203697-15203716 None:intergenic 30.0%
TCTTGGCTAAAATTTACAAG+AGG + chr2_4:15203697-15203716 Msa0317430:CDS 30.0%
ATTGCATCTTCAAACAATGT+TGG - chr2_4:15203753-15203772 None:intergenic 30.0%
ACATTGTTTGAAGATGCAAT+AGG + chr2_4:15203753-15203772 Msa0317430:three_prime_UTR 30.0%
!!! TCTTACCATGTCTTTTTTAG+GGG + chr2_4:15203829-15203848 Msa0317430:three_prime_UTR 30.0%
GAAACATAGAAAATGGATAG+AGG + chr2_4:15203995-15204014 Msa0317430:three_prime_UTR 30.0%
TTATAGTAGCAAACTTCCAA+TGG + chr2_4:15204040-15204059 Msa0317430:three_prime_UTR 30.0%
GATGAAGTAAATAGAGAAGA+AGG + chr2_4:15204311-15204330 Msa0317430:three_prime_UTR 30.0%
TCGGTACATTTAAATGTTGT+TGG + chr2_4:15204517-15204536 Msa0317430:three_prime_UTR 30.0%
! TTGGGAATTTTGTGAAAACA+AGG + chr2_4:15204566-15204585 Msa0317430:three_prime_UTR 30.0%
!!! GGTTGTAGACTATTTTAACA+CGG + chr2_4:15204711-15204730 Msa0317430:three_prime_UTR 30.0%
!!! GTTGTAGACTATTTTAACAC+GGG + chr2_4:15204712-15204731 Msa0317430:three_prime_UTR 30.0%
TGGGAGAATAAATAGAGGAA+TGG - chr2_4:15199538-15199557 None:intergenic 35.0%
GAAATGAGAGAGAAAGAAAG+AGG - chr2_4:15199626-15199645 None:intergenic 35.0%
TTCTCTCTCATTTCCATCAA+TGG + chr2_4:15199632-15199651 Msa0317430:exon 35.0%
AGAGTAGACATTCAAGAATG+TGG - chr2_4:15199670-15199689 None:intergenic 35.0%
AACTGCGAGTTAAGAGAAAA+TGG + chr2_4:15199984-15200003 Msa0317430:intron 35.0%
ACTGCGAGTTAAGAGAAAAT+GGG + chr2_4:15199985-15200004 Msa0317430:intron 35.0%
TAAGAGAAAATGGGATGCTA+AGG + chr2_4:15199994-15200013 Msa0317430:intron 35.0%
AAGAGAAAATGGGATGCTAA+GGG + chr2_4:15199995-15200014 Msa0317430:intron 35.0%
TTAGTTATCGGTAAAGTTGG+TGG + chr2_4:15200055-15200074 Msa0317430:intron 35.0%
AAAATCGATAACCACGTCAT+CGG - chr2_4:15200091-15200110 None:intergenic 35.0%
! TAGAGGTGTGTGTATATTCA+AGG + chr2_4:15200174-15200193 Msa0317430:intron 35.0%
GATCACAGCAAATTATGTCA+TGG - chr2_4:15200346-15200365 None:intergenic 35.0%
ATATTGCAAGTACAAAGGGA+TGG - chr2_4:15200409-15200428 None:intergenic 35.0%
AAAACTTAATTCCTACCTCC+AGG - chr2_4:15200647-15200666 None:intergenic 35.0%
TAGTGACTTTGGCAAAATCA+CGG - chr2_4:15200800-15200819 None:intergenic 35.0%
! GTTTCGAATGATAGTGACTT+TGG - chr2_4:15200811-15200830 None:intergenic 35.0%
!!! AGATGCATTTTAACTATGGC+AGG + chr2_4:15200909-15200928 Msa0317430:intron 35.0%
!!! GATGCATTTTAACTATGGCA+GGG + chr2_4:15200910-15200929 Msa0317430:intron 35.0%
! AGCTACCGATTGTTAAAAGA+AGG + chr2_4:15200963-15200982 Msa0317430:CDS 35.0%
! CCTGTCCTTCTTTTAACAAT+CGG - chr2_4:15200971-15200990 None:intergenic 35.0%
GCTGCAAAATTCATCAATAC+AGG - chr2_4:15201142-15201161 None:intergenic 35.0%
TCTTGTTCTTGACGACATTA+TGG + chr2_4:15201175-15201194 Msa0317430:CDS 35.0%
TATCCTTAGGAAACACTTCA+AGG + chr2_4:15201390-15201409 Msa0317430:CDS 35.0%
ATCCTTAGGAAACACTTCAA+GGG + chr2_4:15201391-15201410 Msa0317430:CDS 35.0%
TCACAGTGATAAGGTGTATT+TGG - chr2_4:15201608-15201627 None:intergenic 35.0%
! TATCTCTCTTTTGACACTGA+TGG - chr2_4:15201777-15201796 None:intergenic 35.0%
AACGACAAGAAACCGAAATA+AGG - chr2_4:15202195-15202214 None:intergenic 35.0%
TAAAGGAGTTGAGGAGATAA+AGG - chr2_4:15202510-15202529 None:intergenic 35.0%
TTAAGGGATTAAAGGAGTTG+AGG - chr2_4:15202519-15202538 None:intergenic 35.0%
!!! GGGAACATATTTTCAAGTTC+AGG + chr2_4:15202729-15202748 Msa0317430:CDS 35.0%
!! ACAGAATTCTAGAGTGTGAA+TGG - chr2_4:15202776-15202795 None:intergenic 35.0%
! TTTGGTGATCCTGAAACAAT+TGG + chr2_4:15202900-15202919 Msa0317430:CDS 35.0%
TGATCCTGAAACAATTGGAA+AGG + chr2_4:15202905-15202924 Msa0317430:CDS 35.0%
TTGAAGACTTTAAGTGCTCT+TGG + chr2_4:15203019-15203038 Msa0317430:CDS 35.0%
TGAAGACTTTAAGTGCTCTT+GGG + chr2_4:15203020-15203039 Msa0317430:CDS 35.0%
CATGGCAGAAAAAAAAGAGA+AGG - chr2_4:15203135-15203154 None:intergenic 35.0%
! AATGACTTTTTGTGGTGAAC+AGG + chr2_4:15203165-15203184 Msa0317430:intron 35.0%
TTGACTATAGCAACATTTGC+AGG - chr2_4:15203211-15203230 None:intergenic 35.0%
CGAGATTAAGCTCGTTATAA+AGG - chr2_4:15203237-15203256 None:intergenic 35.0%
TTATAACGAGCTTAATCTCG+AGG + chr2_4:15203237-15203256 Msa0317430:CDS 35.0%
TGTTGGTATTTGTCCTACAA+GGG - chr2_4:15203736-15203755 None:intergenic 35.0%
ATGTTGGTATTTGTCCTACA+AGG - chr2_4:15203737-15203756 None:intergenic 35.0%
!!! CTTACCATGTCTTTTTTAGG+GGG + chr2_4:15203830-15203849 Msa0317430:three_prime_UTR 35.0%
TGTAAACTGTCTTGTGATAC+TGG + chr2_4:15203878-15203897 Msa0317430:three_prime_UTR 35.0%
CATATTAAGGCAACTACCAT+TGG - chr2_4:15204059-15204078 None:intergenic 35.0%
GGTAGTTGCCTTAATATGAT+TGG + chr2_4:15204061-15204080 Msa0317430:three_prime_UTR 35.0%
ATAATATAGCGAACAGTTGC+AGG + chr2_4:15204347-15204366 Msa0317430:three_prime_UTR 35.0%
CAAAATTCCCAACATCATCT+TGG - chr2_4:15204558-15204577 None:intergenic 35.0%
TTTGTCACAAGCTATTCAGT+GGG + chr2_4:15204639-15204658 Msa0317430:three_prime_UTR 35.0%
!! TCCAAATGTTGATTTCGAGT+TGG + chr2_4:15204678-15204697 Msa0317430:three_prime_UTR 35.0%
TCCAACTCGAAATCAACATT+TGG - chr2_4:15204682-15204701 None:intergenic 35.0%
AAAATAGTCTACAACCCTCT+TGG - chr2_4:15204707-15204726 None:intergenic 35.0%
AACAATGATATACCCGAGTT+TGG + chr2_4:15204736-15204755 Msa0317430:three_prime_UTR 35.0%
ATTGACTGACCACCTTTAGT+GGG - chr2_4:15200025-15200044 None:intergenic 40.0%
AATTGACTGACCACCTTTAG+TGG - chr2_4:15200026-15200045 None:intergenic 40.0%
GGTGTGTGTATATTCAAGGA+AGG + chr2_4:15200178-15200197 Msa0317430:intron 40.0%
TTGTTGTGGAAACTTGCACA+TGG + chr2_4:15200450-15200469 Msa0317430:intron 40.0%
CGGTGAATTTGACAAAATCC+TGG + chr2_4:15200714-15200733 Msa0317430:intron 40.0%
CCGATTGTTAAAAGAAGGAC+AGG + chr2_4:15200968-15200987 Msa0317430:CDS 40.0%
! ATTTTCCAAGCTAGTGCTCT+TGG + chr2_4:15201008-15201027 Msa0317430:CDS 40.0%
! TCTTGGTTGGTGCATTGAAT+GGG + chr2_4:15201025-15201044 Msa0317430:CDS 40.0%
ACCACAGGAAACTTGTGAAA+CGG - chr2_4:15201098-15201117 None:intergenic 40.0%
TTGGGTACTCTAAACCAACA+TGG - chr2_4:15201227-15201246 None:intergenic 40.0%
!! ATGTTGGTTTAGAGTACCCA+AGG + chr2_4:15201226-15201245 Msa0317430:CDS 40.0%
AAGTGTTTCCTAAGGATACG+CGG - chr2_4:15201388-15201407 None:intergenic 40.0%
! TTCCCTTGAAGTGTTTCCTA+AGG - chr2_4:15201396-15201415 None:intergenic 40.0%
GTGATAAGGTGTATTTGGAC+AGG - chr2_4:15201603-15201622 None:intergenic 40.0%
GCTAGCTAGAAGAGAACAAT+AGG - chr2_4:15201973-15201992 None:intergenic 40.0%
TAGCTATGAACATCTTCTGC+AGG + chr2_4:15202081-15202100 Msa0317430:intron 40.0%
TCTTGTACTGAACAATACGC+CGG - chr2_4:15202109-15202128 None:intergenic 40.0%
! TAGCATTTTTCTCCTTTGCC+AGG + chr2_4:15202470-15202489 Msa0317430:intron 40.0%
CACATGCAACCTGTGAAAAT+AGG - chr2_4:15202645-15202664 None:intergenic 40.0%
GGTTGCATGTGCATTACTAA+TGG + chr2_4:15202654-15202673 Msa0317430:intron 40.0%
CTCACCTTTCCAATTGTTTC+AGG - chr2_4:15202912-15202931 None:intergenic 40.0%
CTTCAATATCTGTGCCTATC+TGG - chr2_4:15203005-15203024 None:intergenic 40.0%
ATAGCAACATTTGCAGGATC+TGG - chr2_4:15203205-15203224 None:intergenic 40.0%
GGCAGTTATTTAGAAGTGGA+GGG - chr2_4:15203282-15203301 None:intergenic 40.0%
TGGCAGTTATTTAGAAGTGG+AGG - chr2_4:15203283-15203302 None:intergenic 40.0%
! TGGAGATGATCTTTCGCTTT+TGG - chr2_4:15203477-15203496 None:intergenic 40.0%
GAATGTATAGGGTGCATTTG+CGG + chr2_4:15203590-15203609 Msa0317430:intron 40.0%
! AGCAGTATTGAAGTCCTTCT+TGG + chr2_4:15203680-15203699 Msa0317430:CDS 40.0%
CAGAAGTAGATTTCCCTTGT+AGG + chr2_4:15203720-15203739 Msa0317430:exon 40.0%
ATCACCCCCTAAAAAAGACA+TGG - chr2_4:15203837-15203856 None:intergenic 40.0%
TCAAGTTCAGAGATAGACCA+TGG + chr2_4:15203958-15203977 Msa0317430:three_prime_UTR 40.0%
TTCTTTCACAGGCAAAACCA+TGG - chr2_4:15203978-15203997 None:intergenic 40.0%
! TTTTCACTTGGCTTCGTGTA+TGG + chr2_4:15204094-15204113 Msa0317430:three_prime_UTR 40.0%
AGATTTACACAAGTGCAGCA+GGG + chr2_4:15204433-15204452 Msa0317430:three_prime_UTR 40.0%
ATGTGCATCCAAGATGATGT+TGG + chr2_4:15204547-15204566 Msa0317430:three_prime_UTR 40.0%
TGTGCATCCAAGATGATGTT+GGG + chr2_4:15204548-15204567 Msa0317430:three_prime_UTR 40.0%
TTGTGAAAACAAGGACGATG+TGG + chr2_4:15204575-15204594 Msa0317430:three_prime_UTR 40.0%
! TCGGATATAGGTGAAGCATT+GGG + chr2_4:15204616-15204635 Msa0317430:three_prime_UTR 40.0%
GTTTGTCACAAGCTATTCAG+TGG + chr2_4:15204638-15204657 Msa0317430:three_prime_UTR 40.0%
TGAGAGAGAAAGAAAGAGGG+TGG - chr2_4:15199622-15199641 None:intergenic 45.0%
GACTTGAGATCTGCCATTGA+TGG - chr2_4:15199648-15199667 None:intergenic 45.0%
GTCTGAGGATTCTCGTCAAT+GGG + chr2_4:15199731-15199750 Msa0317430:CDS 45.0%
ATTCTCGTCAATGGGTCGAT+AGG + chr2_4:15199739-15199758 Msa0317430:CDS 45.0%
TTCTCGTCAATGGGTCGATA+GGG + chr2_4:15199740-15199759 Msa0317430:CDS 45.0%
AGAAAATGGGATGCTAAGGG+AGG + chr2_4:15199998-15200017 Msa0317430:intron 45.0%
TTGACTGACCACCTTTAGTG+GGG - chr2_4:15200024-15200043 None:intergenic 45.0%
!! GATATTTTGCACCGATGACG+TGG + chr2_4:15200077-15200096 Msa0317430:intron 45.0%
! ACGGTGTCCGACCATAATTT+TGG - chr2_4:15200781-15200800 None:intergenic 45.0%
TAACCATGCTCCCTTGGAAA+AGG + chr2_4:15200836-15200855 Msa0317430:intron 45.0%
! AATACCCCCTCCTTTTCCAA+GGG - chr2_4:15200849-15200868 None:intergenic 45.0%
! AAATACCCCCTCCTTTTCCA+AGG - chr2_4:15200850-15200869 None:intergenic 45.0%
TGTCGATAACTGACAGTCCA+CGG - chr2_4:15200944-15200963 None:intergenic 45.0%
! CTCTTGGTTGGTGCATTGAA+TGG + chr2_4:15201024-15201043 Msa0317430:CDS 45.0%
GTTGGTGCATTGAATGGGTA+TGG + chr2_4:15201030-15201049 Msa0317430:intron 45.0%
ACCGTTTCACAAGTTTCCTG+TGG + chr2_4:15201094-15201113 Msa0317430:intron 45.0%
GTTTCACAAGTTTCCTGTGG+TGG + chr2_4:15201097-15201116 Msa0317430:intron 45.0%
! GGTTTAGAGTACCCAAGGTT+TGG + chr2_4:15201231-15201250 Msa0317430:intron 45.0%
GGAATGATTGCTGCGAATGA+TGG + chr2_4:15201340-15201359 Msa0317430:CDS 45.0%
ACCATATTCCGCGTATCCTT+AGG + chr2_4:15201377-15201396 Msa0317430:CDS 45.0%
TCCTAAGGATACGCGGAATA+TGG - chr2_4:15201381-15201400 None:intergenic 45.0%
GTTGAGTTTCAAACTGCTGC+TGG + chr2_4:15201535-15201554 Msa0317430:CDS 45.0%
!! GATCGATTTGATCACCACAC+TGG + chr2_4:15201564-15201583 Msa0317430:CDS 45.0%
GATTTGATCACCACACTGGA+AGG + chr2_4:15201568-15201587 Msa0317430:CDS 45.0%
! GTCTTTTTCTCCTTCCAGTG+TGG - chr2_4:15201581-15201600 None:intergenic 45.0%
GTTGAGGAGATAAAGGTCGA+GGG - chr2_4:15202503-15202522 None:intergenic 45.0%
AGTTGAGGAGATAAAGGTCG+AGG - chr2_4:15202504-15202523 None:intergenic 45.0%
GCATGTGCATTACTAATGGC+TGG + chr2_4:15202658-15202677 Msa0317430:CDS 45.0%
ACTAATGGCTGGTGAAGATC+TGG + chr2_4:15202669-15202688 Msa0317430:CDS 45.0%
TACTGTCTGTCACTATCAGC+TGG + chr2_4:15202809-15202828 Msa0317430:intron 45.0%
AATTGGAAAGGTGAGTGCAC+TGG + chr2_4:15202917-15202936 Msa0317430:intron 45.0%
AGACTTTAAGTGCTCTTGGG+TGG + chr2_4:15203023-15203042 Msa0317430:CDS 45.0%
! TTGGGTGGTTGTGAAAGCAT+TGG + chr2_4:15203038-15203057 Msa0317430:CDS 45.0%
AAGAGAAGGAAAGAAGCAGC+AGG - chr2_4:15203121-15203140 None:intergenic 45.0%
TGTGGTGAACAGGAGAACTA+TGG + chr2_4:15203175-15203194 Msa0317430:intron 45.0%
GTGGTGAACAGGAGAACTAT+GGG + chr2_4:15203176-15203195 Msa0317430:intron 45.0%
!!! GCGTAGCGGATTTTTTGAGA+AGG + chr2_4:15203438-15203457 Msa0317430:intron 45.0%
AAGATGCAATAGGAGCTAGC+TGG + chr2_4:15203763-15203782 Msa0317430:three_prime_UTR 45.0%
AACAGTTGCAGGAACAGGAT+TGG + chr2_4:15204358-15204377 Msa0317430:three_prime_UTR 45.0%
CAGATTTACACAAGTGCAGC+AGG + chr2_4:15204432-15204451 Msa0317430:three_prime_UTR 45.0%
! CAACGTGGATGCGTCTTTTT+CGG + chr2_4:15204498-15204517 Msa0317430:three_prime_UTR 45.0%
ACCTATATCCGACACACACA+CGG - chr2_4:15204608-15204627 None:intergenic 45.0%
GTCGGATATAGGTGAAGCAT+TGG + chr2_4:15204615-15204634 Msa0317430:three_prime_UTR 45.0%
!! ATTTCGAGTTGGATGCCAAG+AGG + chr2_4:15204689-15204708 Msa0317430:three_prime_UTR 45.0%
!! TTTCGAGTTGGATGCCAAGA+GGG + chr2_4:15204690-15204709 Msa0317430:three_prime_UTR 45.0%
AAAGAGAGATGCTGCACAGC+CGG - chr2_4:15199510-15199529 None:intergenic 50.0%
GGTCTGAGGATTCTCGTCAA+TGG + chr2_4:15199730-15199749 Msa0317430:CDS 50.0%
ATGCTGGACTACAATGTGCC+TGG + chr2_4:15200626-15200645 Msa0317430:intron 50.0%
ACTACAATGTGCCTGGAGGT+AGG + chr2_4:15200633-15200652 Msa0317430:intron 50.0%
CATACGTAACCATGCTCCCT+TGG + chr2_4:15200830-15200849 Msa0317430:intron 50.0%
CATGCTCCCTTGGAAAAGGA+GGG + chr2_4:15200840-15200859 Msa0317430:intron 50.0%
ATGCTCCCTTGGAAAAGGAG+GGG + chr2_4:15200841-15200860 Msa0317430:intron 50.0%
TCCAAGCTAGTGCTCTTGGT+TGG + chr2_4:15201012-15201031 Msa0317430:CDS 50.0%
!! ACCAACCAAGAGCACTAGCT+TGG - chr2_4:15201016-15201035 None:intergenic 50.0%
GGATTGCTCAATTCCACCAC+AGG - chr2_4:15201113-15201132 None:intergenic 50.0%
TGAACATCTTCTGCAGGCAC+CGG + chr2_4:15202087-15202106 Msa0317430:intron 50.0%
GAGGGTTCAATTCCTGGCAA+AGG - chr2_4:15202485-15202504 None:intergenic 50.0%
AAGGTCGAGGGTTCAATTCC+TGG - chr2_4:15202491-15202510 None:intergenic 50.0%
TGAGTGCACTGGATCATGCA+TGG + chr2_4:15202928-15202947 Msa0317430:intron 50.0%
ACTGCTTGAACTGCACTGCT+GGG - chr2_4:15203666-15203685 None:intergenic 50.0%
TACTGCTTGAACTGCACTGC+TGG - chr2_4:15203667-15203686 None:intergenic 50.0%
! CTGGAGTCCTGTTTTCTGTG+TGG + chr2_4:15203782-15203801 Msa0317430:three_prime_UTR 50.0%
GTCAGCTCCACACAGAAAAC+AGG - chr2_4:15203792-15203811 None:intergenic 50.0%
TAGCGAACAGTTGCAGGAAC+AGG + chr2_4:15204353-15204372 Msa0317430:three_prime_UTR 50.0%
! TTTGGTGGCAAAAACCGAGC+AGG + chr2_4:15204461-15204480 Msa0317430:three_prime_UTR 50.0%
! TTGGTGGCAAAAACCGAGCA+GGG + chr2_4:15204462-15204481 Msa0317430:three_prime_UTR 50.0%
TACTTAAGCCTTCCCCTGCT+CGG - chr2_4:15204478-15204497 None:intergenic 50.0%
GGGAAGGCTTAAGTACAACG+TGG + chr2_4:15204483-15204502 Msa0317430:three_prime_UTR 50.0%
CTATATCCGACACACACACG+GGG - chr2_4:15204606-15204625 None:intergenic 50.0%
CCTATATCCGACACACACAC+GGG - chr2_4:15204607-15204626 None:intergenic 50.0%
AGCAGGGTCATGGAGAAGCT+CGG - chr2_4:15199703-15199722 None:intergenic 55.0%
TCCATGACCCTGCTTTCGAG+TGG + chr2_4:15199709-15199728 Msa0317430:CDS 55.0%
ACCACTCGAAAGCAGGGTCA+TGG - chr2_4:15199713-15199732 None:intergenic 55.0%
CCTCAGACCACTCGAAAGCA+GGG - chr2_4:15199719-15199738 None:intergenic 55.0%
TCCTCAGACCACTCGAAAGC+AGG - chr2_4:15199720-15199739 None:intergenic 55.0%
CTGGACTACAATGTGCCTGG+AGG + chr2_4:15200629-15200648 Msa0317430:intron 55.0%
! CCTCCTTTTCCAAGGGAGCA+TGG - chr2_4:15200842-15200861 None:intergenic 55.0%
CCATGCTCCCTTGGAAAAGG+AGG + chr2_4:15200839-15200858 Msa0317430:intron 55.0%
TGCTCCCTTGGAAAAGGAGG+GGG + chr2_4:15200842-15200861 Msa0317430:intron 55.0%
GACAACTCCCATACACGTCG+TGG + chr2_4:15201197-15201216 Msa0317430:CDS 55.0%
TGGCTGACCACGACGTGTAT+GGG - chr2_4:15201207-15201226 None:intergenic 55.0%
ATGGCTGACCACGACGTGTA+TGG - chr2_4:15201208-15201227 None:intergenic 55.0%
GCTGGGATGAGCTTCAATCG+AGG - chr2_4:15203649-15203668 None:intergenic 55.0%
! GTTGCAGGAACAGGATTGGC+AGG + chr2_4:15204362-15204381 Msa0317430:three_prime_UTR 55.0%
TACACAAGTGCAGCAGGGTC+AGG + chr2_4:15204438-15204457 Msa0317430:three_prime_UTR 55.0%
AAGTGCAGCAGGGTCAGGTT+TGG + chr2_4:15204443-15204462 Msa0317430:three_prime_UTR 55.0%
TGGTGGCAAAAACCGAGCAG+GGG + chr2_4:15204463-15204482 Msa0317430:three_prime_UTR 55.0%
CCCGTGTGTGTGTCGGATAT+AGG + chr2_4:15204604-15204623 Msa0317430:three_prime_UTR 55.0%
! CCCTGCTTTCGAGTGGTCTG+AGG + chr2_4:15199716-15199735 Msa0317430:CDS 60.0%
GCTAAGGGAGGCCCCACTAA+AGG + chr2_4:15200010-15200029 Msa0317430:intron 60.0%
AAGGGAGGCCCCACTAAAGG+TGG + chr2_4:15200013-15200032 Msa0317430:intron 60.0%
ATGGCAGGGAAGCTGAACCG+TGG + chr2_4:15200924-15200943 Msa0317430:intron 60.0%
CACGTCGTGGTCAGCCATGT+TGG + chr2_4:15201210-15201229 Msa0317430:CDS 60.0%
TGCAGCAGGGTCAGGTTTGG+TGG + chr2_4:15204446-15204465 Msa0317430:three_prime_UTR 60.0%
GGCAAAAACCGAGCAGGGGA+AGG + chr2_4:15204467-15204486 Msa0317430:three_prime_UTR 60.0%
GTCAAGCCCCGTGTGTGTGT+CGG + chr2_4:15204597-15204616 Msa0317430:three_prime_UTR 60.0%
CGGTGAGTGTGGTTGGCGTG+GGG - chr2_4:15199490-15199509 None:intergenic 65.0%
CCGGTGAGTGTGGTTGGCGT+GGG - chr2_4:15199491-15199510 None:intergenic 65.0%
CCCACGCCAACCACACTCAC+CGG + chr2_4:15199488-15199507 Msa0317430:five_prime_UTR 65.0%
GCACAGCCGGTGAGTGTGGT+TGG - chr2_4:15199497-15199516 None:intergenic 65.0%
TGCTGCACAGCCGGTGAGTG+TGG - chr2_4:15199501-15199520 None:intergenic 65.0%
GCCGGTGAGTGTGGTTGGCG+TGG - chr2_4:15199492-15199511 None:intergenic 70.0%
TCCGCTACGCGCCGCGATAG+CGG - chr2_4:15203428-15203447 None:intergenic 70.0%
!! CTACGCGCCGCGATAGCGGG+CGG - chr2_4:15203424-15203443 None:intergenic 75.0%
CCGCTACGCGCCGCGATAGC+GGG - chr2_4:15203427-15203446 None:intergenic 75.0%
CCCGCTATCGCGGCGCGTAG+CGG + chr2_4:15203424-15203443 Msa0317430:intron 75.0%
! GGCTGCGCCGCCCGCTATCG+CGG + chr2_4:15203414-15203433 Msa0317430:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 15199455 15204764 15199455 ID=Msa0317430;Name=Msa0317430
chr2_4 mRNA 15199455 15204764 15199455 ID=Msa0317430-mRNA-1;Parent=Msa0317430;Name=Msa0317430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=196|0.81|0.91|0.91|1|1|12|1036|342
chr2_4 exon 15199455 15199761 15199455 ID=Msa0317430-mRNA-1:exon:5677;Parent=Msa0317430-mRNA-1
chr2_4 exon 15200292 15200316 15200292 ID=Msa0317430-mRNA-1:exon:5678;Parent=Msa0317430-mRNA-1
chr2_4 exon 15200931 15201046 15200931 ID=Msa0317430-mRNA-1:exon:5679;Parent=Msa0317430-mRNA-1
chr2_4 exon 15201161 15201247 15201161 ID=Msa0317430-mRNA-1:exon:5680;Parent=Msa0317430-mRNA-1
chr2_4 exon 15201337 15201453 15201337 ID=Msa0317430-mRNA-1:exon:5681;Parent=Msa0317430-mRNA-1
chr2_4 exon 15201535 15201623 15201535 ID=Msa0317430-mRNA-1:exon:5682;Parent=Msa0317430-mRNA-1
chr2_4 exon 15202103 15202154 15202103 ID=Msa0317430-mRNA-1:exon:5683;Parent=Msa0317430-mRNA-1
chr2_4 exon 15202655 15202750 15202655 ID=Msa0317430-mRNA-1:exon:5684;Parent=Msa0317430-mRNA-1
chr2_4 exon 15202882 15202926 15202882 ID=Msa0317430-mRNA-1:exon:5685;Parent=Msa0317430-mRNA-1
chr2_4 exon 15203006 15203095 15203006 ID=Msa0317430-mRNA-1:exon:5686;Parent=Msa0317430-mRNA-1
chr2_4 exon 15203187 15203258 15203187 ID=Msa0317430-mRNA-1:exon:5687;Parent=Msa0317430-mRNA-1
chr2_4 exon 15203600 15204764 15203600 ID=Msa0317430-mRNA-1:exon:5688;Parent=Msa0317430-mRNA-1
chr2_4 five_prime_UTR 15199455 15199650 15199455 ID=Msa0317430-mRNA-1:five_prime_utr;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15199651 15199761 15199651 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15200292 15200316 15200292 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15200931 15201046 15200931 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15201161 15201247 15201161 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15201337 15201453 15201337 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15201535 15201623 15201535 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15202103 15202154 15202103 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15202655 15202750 15202655 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15202882 15202926 15202882 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15203006 15203095 15203006 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15203187 15203258 15203187 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 CDS 15203600 15203728 15203600 ID=Msa0317430-mRNA-1:cds;Parent=Msa0317430-mRNA-1
chr2_4 three_prime_UTR 15203729 15204764 15203729 ID=Msa0317430-mRNA-1:three_prime_utr;Parent=Msa0317430-mRNA-1
Gene Sequence

>Msa0317430

ATGGCAGATCTCAAGTCCACATTCTTGAATGTCTACTCTGTTCTCAAATCCGAGCTTCTCCATGACCCTGCTTTCGAGTGGTCTGAGGATTCTCGTCAATGGGTCGATAGGTTTCAAGTTTATGATGATCCTACAAGGAAGCTGAACCGTGGACTGTCAGTTATCGACAGCTACCGATTGTTAAAAGAAGGACAGGCATTGAATGATGACGAAATTTTCCAAGCTAGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTTCTTGTTCTTGACGACATTATGGACAACTCCCATACACGTCGTGGTCAGCCATGTTGGTTTAGAGTACCCAAGGTTGGAATGATTGCTGCGAATGATGGAGTTCTACTAAGAAACCATATTCCGCGTATCCTTAGGAAACACTTCAAGGGAAAGCCGTATTATGTTGAACTTCTTGATTTATTCAATGAGGTTGAGTTTCAAACTGCTGCTGGACAGATGATCGATTTGATCACCACACTGGAAGGAGAAAAAGACCTGTCCAAATACACCTTATCACTGCACCGGCGTATTGTTCAGTACAAGACTGCCTATTATTCTTTTTACCTTCCTGTTGCATGTGCATTACTAATGGCTGGTGAAGATCTGGATAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATATTTTCAAGTTCAGGATGATTATTTGGATTGCTTTGGTGATCCTGAAACAATTGGAAAGATAGGCACAGATATTGAAGACTTTAAGTGCTCTTGGGTGGTTGTGAAAGCATTGGAACTTTGCAATGAAGAACAAAAGAAGGTTTTACATGAGAACTATGGGAAGCCAGATCCTGCAAATGTTGCTATAGTCAAGACCCTTTATAACGAGCTTAATCTCGAGGGTGCATTTGCGGAGTATGAGAGTGCGAGCTATGAGAAGCTTGTAACCTCGATTGAAGCTCATCCCAGCAGTGCAGTTCAAGCAGTATTGAAGTCCTTCTTGGCTAAAATTTACAAGAGGCAGAAGTAG
Protein sequence

>Msa0317430

MADLKSTFLNVYSVLKSELLHDPAFEWSEDSRQWVDRFQVYDDPTRKLNRGLSVIDSYRLLKEGQALNDDEIFQASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILRKHFKGKPYYVELLDLFNEVEFQTAAGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGEDLDNHVDVKNILVEMGTYFQVQDDYLDCFGDPETIGKIGTDIEDFKCSWVVVKALELCNEEQKKVLHENYGKPDPANVAIVKTLYNELNLEGAFAEYESASYEKLVTSIEAHPSSAVQAVLKSFLAKIYKRQK*