AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188040 MtrunA17_Chr2g0290711 96.199 342 13 0 1 342 1 342 0.0 682
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188040 AT5G47770.1 78.006 341 75 0 2 342 44 384 0.0 571
Msa0188040 AT4G17190.1 77.193 342 78 0 1 342 1 342 0.0 561
Msa0188040 AT4G17190.3 79.730 296 60 0 47 342 10 305 0.0 504
Msa0188040 AT4G17190.2 80.162 247 49 0 96 342 1 247 2.93e-151 425

Find 143 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACCTTTCCAATTGTTTC+AGG 0.147131 2_1:-3028789 None:intergenic
TCCTAAAATTGCATTATTAT+TGG 0.151078 2_1:-3025444 None:intergenic
TCTCATTCAGGATGATTATT+TGG 0.171673 2_1:+3028752 Msa0188040:intron
TTGATCTGCTGTTTAATTAT+TGG 0.186821 2_1:+3030000 Msa0188040:three_prime_UTR
TGATCTGCTGTTTAATTATT+GGG 0.234251 2_1:+3030001 Msa0188040:three_prime_UTR
AAAATAATTTATTATGTCTT+TGG 0.239472 2_1:+3025345 Msa0188040:five_prime_UTR
CCTAAAATTGCATTATTATT+GGG 0.255475 2_1:-3025443 None:intergenic
CATTTAAATGTTGTTGGTTA+TGG 0.256594 2_1:+3030403 Msa0188040:three_prime_UTR
CGAGATTAAGCTCGTTATAA+AGG 0.264877 2_1:-3029114 None:intergenic
TCCTAAGGATACGCGGAATA+TGG 0.280724 2_1:-3027261 None:intergenic
TGTGAAAGAAACATAGAAAA+TGG 0.282768 2_1:+3029868 Msa0188040:three_prime_UTR
TCTTGTTCTTGACGACATTA+TGG 0.285569 2_1:+3027058 Msa0188040:CDS
TGTAAACTGTCTTGTGATAC+TGG 0.291626 2_1:+3029758 Msa0188040:three_prime_UTR
AGCAGTATTGAAGTCCTTCT+TGG 0.310069 2_1:+3029560 Msa0188040:CDS
TCACAGTGATAAGGTGTATT+TGG 0.310978 2_1:-3027488 None:intergenic
AAAATGGATAGAGGAAATAA+AGG 0.317304 2_1:+3029884 Msa0188040:three_prime_UTR
AAGTTTAACCAATCATATTA+AGG 0.319300 2_1:-3029949 None:intergenic
TGTGGTGAACAGGAGAACTA+TGG 0.319745 2_1:+3029055 Msa0188040:intron
ATTCTCGTCAATGGGTTGAT+AGG 0.349932 2_1:+3025623 Msa0188040:CDS
TTCTCTCTCATTTCCATCAA+TGG 0.358198 2_1:+3025516 Msa0188040:exon
GGTAGTTGCCTTAATATGAT+TGG 0.367346 2_1:+3029941 Msa0188040:three_prime_UTR
ATAATATAGCGAACAGTTGC+AGG 0.367448 2_1:+3030227 Msa0188040:three_prime_UTR
TTGACTATAGCAACATTTGC+AGG 0.368701 2_1:-3029088 None:intergenic
TTGAAGACTTTAAGTGCTCT+TGG 0.374180 2_1:+3028899 Msa0188040:CDS
TACTGCTTGAACTGCACTGC+TGG 0.374612 2_1:-3029544 None:intergenic
TCGGTACATTTAAATGTTGT+TGG 0.375382 2_1:+3030397 Msa0188040:three_prime_UTR
AACAATGATATACCCGAGTT+TGG 0.378439 2_1:+3030616 Msa0188040:three_prime_UTR
CTCTTGGTTGGTGCATTGAA+TGG 0.402536 2_1:+3026907 Msa0188040:CDS
CAAAATTCCCAACATCATCT+TGG 0.403595 2_1:-3030435 None:intergenic
AAATGGATAGAGGAAATAAA+GGG 0.411938 2_1:+3029885 Msa0188040:three_prime_UTR
ATGGCTGACCACGACGTGTA+TGG 0.415175 2_1:-3027088 None:intergenic
CCGGTGAGTGTGGTTGGCGT+GGG 0.418108 2_1:-3025377 None:intergenic
GATGATTATTTGGATTGCTT+TGG 0.419545 2_1:+3028762 Msa0188040:CDS
GTTGAGTTTCAAACTGCTGC+TGG 0.420249 2_1:+3027418 Msa0188040:CDS
CAGAAGTAGATTTCCCTTGT+AGG 0.422258 2_1:+3029600 Msa0188040:exon
ATAGCAACATTTGCAGGATC+TGG 0.426079 2_1:-3029082 None:intergenic
TACTTAAGCCTTCCCCTGCT+CGG 0.432552 2_1:-3030355 None:intergenic
CAGATTTACACAAGTGCAGC+AGG 0.434422 2_1:+3030312 Msa0188040:three_prime_UTR
TTGCAATGAAGAACAAAAGA+AGG 0.435483 2_1:+3028945 Msa0188040:CDS
ACTAATGGCTGGTGAAGATC+TGG 0.438016 2_1:+3028547 Msa0188040:CDS
TTTATGTACTCACAGTGATA+AGG 0.440398 2_1:-3027497 None:intergenic
TCCAACTCGAAATCAACATT+TGG 0.440685 2_1:-3030559 None:intergenic
ATCAATAATGGCTCCAAACT+CGG 0.443371 2_1:-3030629 None:intergenic
TGAAGACTTTAAGTGCTCTT+GGG 0.443835 2_1:+3028900 Msa0188040:CDS
TAGCGAACAGTTGCAGGAAC+AGG 0.445801 2_1:+3030233 Msa0188040:three_prime_UTR
GTCAGCTCCACACAGAAAAC+AGG 0.449743 2_1:-3029669 None:intergenic
TCCTCAGACCACTCGAAAGC+AGG 0.450781 2_1:-3025601 None:intergenic
TTTGGTGATCCTGAAACAAT+TGG 0.452410 2_1:+3028780 Msa0188040:CDS
TACACAAGTGCAGCAGGGTC+AGG 0.453632 2_1:+3030318 Msa0188040:three_prime_UTR
GCCGGTGAGTGTGGTTGGCG+TGG 0.454913 2_1:-3025378 None:intergenic
GTCTGAGGATTCTCGTCAAT+GGG 0.454993 2_1:+3025615 Msa0188040:CDS
TCAAGAAGTTCAACATAATA+CGG 0.457431 2_1:-3027301 None:intergenic
GATGAAGTAAATAGAGAAGA+AGG 0.459696 2_1:+3030191 Msa0188040:three_prime_UTR
GAGATTAAGCTCGTTATAAA+GGG 0.459820 2_1:-3029113 None:intergenic
AAAGAGAGATGCTGCACAGC+CGG 0.466199 2_1:-3025396 None:intergenic
TTCCCTTGAAGTGTTTCCTA+AGG 0.467529 2_1:-3027276 None:intergenic
GACTTGAGATCTGCCATTGA+TGG 0.470370 2_1:-3025529 None:intergenic
CATATTAAGGCAACTACCAT+TGG 0.471122 2_1:-3029936 None:intergenic
AAAGAACATTCTTGTTGAGA+TGG 0.473997 2_1:+3028586 Msa0188040:CDS
ACCATATTCCGCGTATCCTT+AGG 0.482141 2_1:+3027260 Msa0188040:CDS
TGCAGCAGGGTCAGGTTTGG+TGG 0.484303 2_1:+3030326 Msa0188040:three_prime_UTR
GGTCTGAGGATTCTCGTCAA+TGG 0.485094 2_1:+3025614 Msa0188040:CDS
ACATTGTTTGAAGATGCAAT+AGG 0.485380 2_1:+3029633 Msa0188040:three_prime_UTR
GAAATGAGAGAGAAAGAAAG+AGG 0.487302 2_1:-3025507 None:intergenic
TATCCTTAGGAAACACTTCA+AGG 0.492202 2_1:+3027273 Msa0188040:CDS
TCTTGGTTGGTGCATTGAAT+GGG 0.494224 2_1:+3026908 Msa0188040:CDS
GAAACATAGAAAATGGATAG+AGG 0.503294 2_1:+3029875 Msa0188040:three_prime_UTR
ATTATTGGGAGAATAAATAG+AGG 0.504351 2_1:-3025429 None:intergenic
TCCAAGCTAGTGCTCTTGGT+TGG 0.504745 2_1:+3026895 Msa0188040:CDS
TCAATAATGGCTCCAAACTC+GGG 0.505745 2_1:-3030628 None:intergenic
AACAGTTGCAGGAACAGGAT+TGG 0.506063 2_1:+3030238 Msa0188040:three_prime_UTR
ATGTTGGTATTTGTCCTACA+AGG 0.508631 2_1:-3029614 None:intergenic
TGAGAGAGAAAGAAAGAGGG+TGG 0.509584 2_1:-3025503 None:intergenic
AAAATAGTCTACAACCCTCT+TGG 0.515575 2_1:-3030584 None:intergenic
GGAATGATTGCTGCGAATGA+TGG 0.516786 2_1:+3027223 Msa0188040:CDS
ACCACTCGAAAGCAGGGTCA+TGG 0.517327 2_1:-3025594 None:intergenic
GCACAGCCGGTGAGTGTGGT+TGG 0.517522 2_1:-3025383 None:intergenic
GAATGTATAGGGTGCATTTG+CGG 0.518977 2_1:+3029470 Msa0188040:intron
TGGCTGACCACGACGTGTAT+GGG 0.519560 2_1:-3027087 None:intergenic
TTCTCGTCAATGGGTTGATA+GGG 0.520759 2_1:+3025624 Msa0188040:CDS
AAGAACATTCTTGTTGAGAT+GGG 0.521436 2_1:+3028587 Msa0188040:CDS
AAGTGCAGCAGGGTCAGGTT+TGG 0.526753 2_1:+3030323 Msa0188040:three_prime_UTR
TCCAAATGTTGATTTCGAGT+TGG 0.529065 2_1:+3030558 Msa0188040:three_prime_UTR
CCCTGCTTTCGAGTGGTCTG+AGG 0.529792 2_1:+3025600 Msa0188040:CDS
CCCGTGTGTGTGTCGGATAT+AGG 0.529858 2_1:+3030484 Msa0188040:three_prime_UTR
CCGATTGTTAAAAGAAGGAC+AGG 0.537482 2_1:+3026851 Msa0188040:CDS
GTCGGATATAGGTGAAGCAT+TGG 0.538354 2_1:+3030495 Msa0188040:three_prime_UTR
AGCTACCGATTGTTAAAAGA+AGG 0.538591 2_1:+3026846 Msa0188040:CDS
CCCACGCCAACCACACTCAC+CGG 0.539111 2_1:+3025377 Msa0188040:five_prime_UTR
ATTGCATCTTCAAACAATGT+TGG 0.539226 2_1:-3029630 None:intergenic
GTTGCAGGAACAGGATTGGC+AGG 0.540388 2_1:+3030242 Msa0188040:three_prime_UTR
CACGTCGTGGTCAGCCATGT+TGG 0.540988 2_1:+3027093 Msa0188040:CDS
GTGATAAGGTGTATTTGGAC+AGG 0.546327 2_1:-3027483 None:intergenic
TCGGATATAGGTGAAGCATT+GGG 0.547463 2_1:+3030496 Msa0188040:three_prime_UTR
ACCAACCAAGAGCACTAGCT+TGG 0.550761 2_1:-3026896 None:intergenic
AAATGAGAGAGAAAGAAAGA+GGG 0.551482 2_1:-3025506 None:intergenic
ACCTATATCCGACACACACA+CGG 0.552322 2_1:-3030485 None:intergenic
TGTGCATCCAAGATGATGTT+GGG 0.557801 2_1:+3030428 Msa0188040:three_prime_UTR
TGGGAGAATAAATAGAGGAA+TGG 0.562637 2_1:-3025424 None:intergenic
GGTTGCATGTGCATTACTAA+TGG 0.564966 2_1:+3028532 Msa0188040:intron
ATGTTGGTTTAGAGTACCCA+AGG 0.567818 2_1:+3027109 Msa0188040:CDS
GTGGTGAACAGGAGAACTAT+GGG 0.570700 2_1:+3029056 Msa0188040:intron
TGCTGCACAGCCGGTGAGTG+TGG 0.572823 2_1:-3025387 None:intergenic
TTGGGTGGTTGTGAAAGCAT+TGG 0.575145 2_1:+3028918 Msa0188040:CDS
TTATAACGAGCTTAATCTCG+AGG 0.575890 2_1:+3029117 Msa0188040:CDS
TCCATGACCCTGCTTTCGAG+TGG 0.576232 2_1:+3025593 Msa0188040:CDS
TTTCGAGTTGGATGCCAAGA+GGG 0.578061 2_1:+3030570 Msa0188040:three_prime_UTR
CCTATATCCGACACACACAC+GGG 0.579419 2_1:-3030484 None:intergenic
GCATGTGCATTACTAATGGC+TGG 0.579792 2_1:+3028536 Msa0188040:CDS
AGCAGGGTCATGGAGAAGCT+CGG 0.583918 2_1:-3025584 None:intergenic
GTCAAGCCCCGTGTGTGTGT+CGG 0.584280 2_1:+3030477 Msa0188040:three_prime_UTR
AGACTTTAAGTGCTCTTGGG+TGG 0.587887 2_1:+3028903 Msa0188040:CDS
CCTCAGACCACTCGAAAGCA+GGG 0.588733 2_1:-3025600 None:intergenic
ACTGCTTGAACTGCACTGCT+GGG 0.591941 2_1:-3029543 None:intergenic
GTTTGTCACAAGCTATTCAG+TGG 0.598148 2_1:+3030518 Msa0188040:three_prime_UTR
CGGTGAGTGTGGTTGGCGTG+GGG 0.600773 2_1:-3025376 None:intergenic
ACTTCTTGATTTATTCAATG+AGG 0.600835 2_1:+3027315 Msa0188040:CDS
AGAGTAGACATTCAAGAATG+TGG 0.605616 2_1:-3025551 None:intergenic
AAGATGCAATAGGAGCTAGC+TGG 0.605998 2_1:+3029643 Msa0188040:three_prime_UTR
TGTTGGTATTTGTCCTACAA+GGG 0.609648 2_1:-3029613 None:intergenic
TTATAGTAGCAAACTTCCAA+TGG 0.615369 2_1:+3029920 Msa0188040:three_prime_UTR
ATGTGCATCCAAGATGATGT+TGG 0.617601 2_1:+3030427 Msa0188040:three_prime_UTR
TTTGTCACAAGCTATTCAGT+GGG 0.618720 2_1:+3030519 Msa0188040:three_prime_UTR
TTGTGAAAACAAGGACGATG+TGG 0.619742 2_1:+3030455 Msa0188040:three_prime_UTR
TCAAGTTCAGAGATAGACCA+TGG 0.620633 2_1:+3029838 Msa0188040:three_prime_UTR
GATTTGATCACCACACTGGA+AGG 0.625103 2_1:+3027451 Msa0188040:CDS
ATCCTTAGGAAACACTTCAA+GGG 0.625790 2_1:+3027274 Msa0188040:CDS
TGTCGATAACTGACAGTCCA+CGG 0.626037 2_1:-3026824 None:intergenic
TCTTGGCTAAAATTTACAAG+AGG 0.627016 2_1:+3029577 Msa0188040:CDS
GAATGTTCTTTACATCAACA+TGG 0.628388 2_1:-3028574 None:intergenic
TTCTTTCACAGGCAAAACCA+TGG 0.631764 2_1:-3029855 None:intergenic
GATCGATTTGATCACCACAC+TGG 0.647023 2_1:+3027447 Msa0188040:CDS
ATTTCGAGTTGGATGCCAAG+AGG 0.662942 2_1:+3030569 Msa0188040:three_prime_UTR
AGATTTACACAAGTGCAGCA+GGG 0.679813 2_1:+3030313 Msa0188040:three_prime_UTR
TGATCCTGAAACAATTGGAA+AGG 0.681979 2_1:+3028785 Msa0188040:CDS
TTGGGTACTCTAAACCAACA+TGG 0.682317 2_1:-3027107 None:intergenic
GACAACTCCCATACACGTCG+TGG 0.685129 2_1:+3027080 Msa0188040:CDS
CTATATCCGACACACACACG+GGG 0.691294 2_1:-3030483 None:intergenic
ATGGCAGGGAAGCTGAACCG+TGG 0.698541 2_1:+3026807 Msa0188040:intron
AAGTGTTTCCTAAGGATACG+CGG 0.701381 2_1:-3027268 None:intergenic
GCTGGGATGAGCTTCAATCG+AGG 0.703794 2_1:-3029526 None:intergenic
TCTTGTACTGAACAATACGC+CGG 0.718334 2_1:-3027989 None:intergenic
GGGAAGGCTTAAGTACAACG+TGG 0.767317 2_1:+3030363 Msa0188040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTTATTATGTCTT+TGG + chr2_1:3025345-3025364 Msa0188040:five_prime_UTR 10.0%
!!! TTATTTTGATTAAATTTAAG+TGG + chr2_1:3025819-3025838 Msa0188040:intron 10.0%
!!! TATTTTGATTAAATTTAAGT+GGG + chr2_1:3025820-3025839 Msa0188040:intron 10.0%
!!! AAGTTACTTTTTTTTATTAA+TGG + chr2_1:3028290-3028309 Msa0188040:intron 10.0%
!!! TTTAATGGTTTTATATTTTG+TGG + chr2_1:3026095-3026114 Msa0188040:intron 15.0%
!!! ATGTATGATTTTGTTTATTA+TGG + chr2_1:3026250-3026269 Msa0188040:intron 15.0%
!! ATTTATCTTATGTATACATT+TGG + chr2_1:3026412-3026431 Msa0188040:intron 15.0%
!!! ATATTATTTTTGTTGTTGTA+GGG + chr2_1:3027162-3027181 Msa0188040:intron 15.0%
!!! TTTTATGTTATTGTTAGTAT+TGG + chr2_1:3027582-3027601 Msa0188040:intron 15.0%
!! ATATAAAAAATGAAGATGAA+AGG - chr2_1:3028227-3028246 None:intergenic 15.0%
!! AAAATAAGTAATTTCGTTAA+GGG - chr2_1:3028413-3028432 None:intergenic 15.0%
!! AAAAATAAGTAATTTCGTTA+AGG - chr2_1:3028414-3028433 None:intergenic 15.0%
!! AAAGATAAATAACATAAAAC+AGG - chr2_1:3028488-3028507 None:intergenic 15.0%
!!! ATTTTTTTTTCCTTCTAAAA+TGG - chr2_1:3029183-3029202 None:intergenic 15.0%
!!! TATTTGAAATTTGAATGTAT+AGG + chr2_1:3029458-3029477 Msa0188040:intron 15.0%
!!! ATTTGAAATTTGAATGTATA+GGG + chr2_1:3029459-3029478 Msa0188040:intron 15.0%
!! CCTAAAATTGCATTATTATT+GGG - chr2_1:3025446-3025465 None:intergenic 20.0%
!! TCCTAAAATTGCATTATTAT+TGG - chr2_1:3025447-3025466 None:intergenic 20.0%
!!! CTCTTATCTTTTTTCATAAT+TGG + chr2_1:3025664-3025683 Msa0188040:intron 20.0%
!!! TTTTTTGCTTGTTTTTGTAA+TGG + chr2_1:3025737-3025756 Msa0188040:intron 20.0%
!! AAGATTTATCATATACTTGT+AGG - chr2_1:3026196-3026215 None:intergenic 20.0%
!!! ATTTTCATGAAAACCTAAAA+GGG - chr2_1:3026375-3026394 None:intergenic 20.0%
!! TGTATACATAAGATAAATCA+GGG - chr2_1:3026410-3026429 None:intergenic 20.0%
!! ATGTATACATAAGATAAATC+AGG - chr2_1:3026411-3026430 None:intergenic 20.0%
!! ATTTGTATGTTTCAATGAAA+TGG - chr2_1:3026441-3026460 None:intergenic 20.0%
!!! ATAAAGATGCATTTTAACTA+TGG + chr2_1:3026788-3026807 Msa0188040:intron 20.0%
!!! GATATTATTTTTGTTGTTGT+AGG + chr2_1:3027161-3027180 Msa0188040:intron 20.0%
!! CTACATCATAGAATAATTAA+AGG - chr2_1:3027200-3027219 None:intergenic 20.0%
!! CTTTAATTATTCTATGATGT+AGG + chr2_1:3027198-3027217 Msa0188040:intron 20.0%
!! AACCTAAAAGAAAATTAACA+CGG - chr2_1:3027401-3027420 None:intergenic 20.0%
!!! AATAGTTTTTTCTTTTTGCT+TGG - chr2_1:3027610-3027629 None:intergenic 20.0%
!!! TTTTCTTTTAGATACATACT+TGG + chr2_1:3027686-3027705 Msa0188040:intron 20.0%
!!! AGGTTAAACTACATTTTTAA+AGG - chr2_1:3028721-3028740 None:intergenic 20.0%
!! TGAATGAGAACAAAAAAATT+AGG - chr2_1:3028741-3028760 None:intergenic 20.0%
!!! TAATTTTTTTGTTCTCATTC+AGG + chr2_1:3028740-3028759 Msa0188040:intron 20.0%
!!! TTAACAGTTTAAAATTGTTG+CGG - chr2_1:3029233-3029252 None:intergenic 20.0%
!! GATATTCTTAAAAAAATGTG+TGG - chr2_1:3029377-3029396 None:intergenic 20.0%
!!! TTCTTAATAACTTTTCTTTC+TGG + chr2_1:3029787-3029806 Msa0188040:three_prime_UTR 20.0%
!! AAGTTTAACCAATCATATTA+AGG - chr2_1:3029952-3029971 None:intergenic 20.0%
! ATTATTGGGAGAATAAATAG+AGG - chr2_1:3025432-3025451 None:intergenic 25.0%
!! CCCAATAATAATGCAATTTT+AGG + chr2_1:3025443-3025462 Msa0188040:five_prime_UTR 25.0%
! AAAAAGATAAGAGAGATGAA+AGG - chr2_1:3025657-3025676 None:intergenic 25.0%
!! TTTTTGTAATGGCTATGTTT+TGG + chr2_1:3025748-3025767 Msa0188040:intron 25.0%
!! TTTTGTAATGGCTATGTTTT+GGG + chr2_1:3025749-3025768 Msa0188040:intron 25.0%
! ACTCAAAAAAAACATCACAT+TGG - chr2_1:3025846-3025865 None:intergenic 25.0%
!! ATTTCTTCGAGATTAGTTAT+CGG + chr2_1:3025926-3025945 Msa0188040:intron 25.0%
! AAGGAAATTGAGGAATTTAA+TGG + chr2_1:3026080-3026099 Msa0188040:intron 25.0%
!!! GAATAGATTTTTGTTTGTTG+TGG + chr2_1:3026319-3026338 Msa0188040:intron 25.0%
!! GATTTTCATGAAAACCTAAA+AGG - chr2_1:3026376-3026395 None:intergenic 25.0%
!!! TTACATCATGTTTTGATTGA+CGG + chr2_1:3026577-3026596 Msa0188040:intron 25.0%
!! TGTAGTTTTTGCCAAAATTA+TGG + chr2_1:3026650-3026669 Msa0188040:intron 25.0%
! ATTCATCAATACAGGATTAT+AGG - chr2_1:3027017-3027036 None:intergenic 25.0%
!!! TTTTTTTTTCTCCAAACCTT+GGG - chr2_1:3027128-3027147 None:intergenic 25.0%
! TTTGGAGAAAAAAAAACATG+TGG + chr2_1:3027132-3027151 Msa0188040:intron 25.0%
! AATTATTCTATGATGTAGGT+TGG + chr2_1:3027202-3027221 Msa0188040:intron 25.0%
! TCAAGAAGTTCAACATAATA+CGG - chr2_1:3027304-3027323 None:intergenic 25.0%
! ACTTCTTGATTTATTCAATG+AGG + chr2_1:3027315-3027334 Msa0188040:CDS 25.0%
! ATTTCAGTGTTTGAATTATG+TGG + chr2_1:3027346-3027365 Msa0188040:intron 25.0%
! ACTGTGAGTACATAAAAAAT+AGG + chr2_1:3027504-3027523 Msa0188040:intron 25.0%
! TGTCATATAAAACTGTTATC+TGG - chr2_1:3027636-3027655 None:intergenic 25.0%
!! GAATTTTACATTGTTCTTTC+AGG - chr2_1:3027792-3027811 None:intergenic 25.0%
! AGGAAGGTAAAAAGAATAAT+AGG - chr2_1:3028018-3028037 None:intergenic 25.0%
! AAGTATGATATAACACTTAC+AGG - chr2_1:3028038-3028057 None:intergenic 25.0%
! TAATTTCGTTAAGGGATTAA+AGG - chr2_1:3028405-3028424 None:intergenic 25.0%
! TTTGAAAAATCCTTTCACAA+TGG + chr2_1:3028453-3028472 Msa0188040:intron 25.0%
! AAGTCATTTCAGTTTAATCA+TGG - chr2_1:3029033-3029052 None:intergenic 25.0%
!! TAAACTGAAATGACTTTTTG+TGG + chr2_1:3029037-3029056 Msa0188040:intron 25.0%
!!! TAAATAACTGCCATTTTAGA+AGG + chr2_1:3029170-3029189 Msa0188040:intron 25.0%
! AAAATTGTTGCGGATAAAAT+TGG - chr2_1:3029223-3029242 None:intergenic 25.0%
! TGATAGTAAGATCAATGAAT+TGG - chr2_1:3029260-3029279 None:intergenic 25.0%
!!! TTTCTTACCATGTCTTTTTT+AGG + chr2_1:3029707-3029726 Msa0188040:three_prime_UTR 25.0%
!!! TTCTTACCATGTCTTTTTTA+GGG + chr2_1:3029708-3029727 Msa0188040:three_prime_UTR 25.0%
!!! ACTTTTCTTTCTGGAATATT+TGG + chr2_1:3029796-3029815 Msa0188040:three_prime_UTR 25.0%
!! ATTTTCTATGTTTCTTTCAC+AGG - chr2_1:3029869-3029888 None:intergenic 25.0%
! TGTGAAAGAAACATAGAAAA+TGG + chr2_1:3029868-3029887 Msa0188040:three_prime_UTR 25.0%
! AAAATGGATAGAGGAAATAA+AGG + chr2_1:3029884-3029903 Msa0188040:three_prime_UTR 25.0%
! AAATGGATAGAGGAAATAAA+GGG + chr2_1:3029885-3029904 Msa0188040:three_prime_UTR 25.0%
!!! GGTTAAACTTTTTTTTCACT+TGG + chr2_1:3029962-3029981 Msa0188040:three_prime_UTR 25.0%
!! TTGATCTGCTGTTTAATTAT+TGG + chr2_1:3030000-3030019 Msa0188040:three_prime_UTR 25.0%
!! TGATCTGCTGTTTAATTATT+GGG + chr2_1:3030001-3030020 Msa0188040:three_prime_UTR 25.0%
!! CATTTAAATGTTGTTGGTTA+TGG + chr2_1:3030403-3030422 Msa0188040:three_prime_UTR 25.0%
AAATGAGAGAGAAAGAAAGA+GGG - chr2_1:3025509-3025528 None:intergenic 30.0%
! AGATTAGTTATCGGTAAAGT+TGG + chr2_1:3025935-3025954 Msa0188040:intron 30.0%
TTGTGATGCTATATAGTTAG+AGG + chr2_1:3026040-3026059 Msa0188040:intron 30.0%
ATATTCAAGGAAGGAAATTG+AGG + chr2_1:3026070-3026089 Msa0188040:intron 30.0%
GAACATATTGCAAGTACAAA+GGG - chr2_1:3026296-3026315 None:intergenic 30.0%
TGAACATATTGCAAGTACAA+AGG - chr2_1:3026297-3026316 None:intergenic 30.0%
!! TGTACTTTTTATGCCCTTTT+AGG + chr2_1:3026359-3026378 Msa0188040:intron 30.0%
TCTGCAATAAATTATAGCAC+AGG - chr2_1:3026490-3026509 None:intergenic 30.0%
CTATAATTTATTGCAGATGC+TGG + chr2_1:3026493-3026512 Msa0188040:intron 30.0%
AACAAAATCATAATGTCACC+AGG - chr2_1:3026618-3026637 None:intergenic 30.0%
! GTTTTTGCCAAAATTATGGT+CGG + chr2_1:3026654-3026673 Msa0188040:intron 30.0%
!!! GTTTTTTTTTCTCCAAACCT+TGG - chr2_1:3027129-3027148 None:intergenic 30.0%
! GACCGTGTTAATTTTCTTTT+AGG + chr2_1:3027396-3027415 Msa0188040:intron 30.0%
TTTATGTACTCACAGTGATA+AGG - chr2_1:3027500-3027519 None:intergenic 30.0%
TTGTGTAGAACTTATGTTGA+TGG + chr2_1:3027534-3027553 Msa0188040:intron 30.0%
! CCAACATTTTACGTTTATCT+AGG - chr2_1:3027561-3027580 None:intergenic 30.0%
CCTAGATAAACGTAAAATGT+TGG + chr2_1:3027558-3027577 Msa0188040:intron 30.0%
TACATACTTGGCAATCTTTA+TGG + chr2_1:3027698-3027717 Msa0188040:intron 30.0%
TGTAAGATAGCAGAATAACA+AGG - chr2_1:3027740-3027759 None:intergenic 30.0%
! AATGCGTATGAGTTGAAATT+CGG + chr2_1:3027824-3027843 Msa0188040:intron 30.0%
ATGATATAACACTTACAGGA+AGG - chr2_1:3028034-3028053 None:intergenic 30.0%
AACGACAAGAAACTGAAATA+AGG - chr2_1:3028073-3028092 None:intergenic 30.0%
!! TCTTTTAAGTGAAGACTCAT+TGG - chr2_1:3028271-3028290 None:intergenic 30.0%
GTTATATGTTCCATTGTGAA+AGG - chr2_1:3028466-3028485 None:intergenic 30.0%
! TATGTATCTCCTATTTTCAC+AGG + chr2_1:3028511-3028530 Msa0188040:intron 30.0%
GAATGTTCTTTACATCAACA+TGG - chr2_1:3028577-3028596 None:intergenic 30.0%
AAAGAACATTCTTGTTGAGA+TGG + chr2_1:3028586-3028605 Msa0188040:CDS 30.0%
AAGAACATTCTTGTTGAGAT+GGG + chr2_1:3028587-3028606 Msa0188040:CDS 30.0%
TCTCATTCAGGATGATTATT+TGG + chr2_1:3028752-3028771 Msa0188040:intron 30.0%
GATGATTATTTGGATTGCTT+TGG + chr2_1:3028762-3028781 Msa0188040:CDS 30.0%
AGTTCTTTATGAAACCAGAT+AGG + chr2_1:3028868-3028887 Msa0188040:intron 30.0%
TTGCAATGAAGAACAAAAGA+AGG + chr2_1:3028945-3028964 Msa0188040:CDS 30.0%
GAGATTAAGCTCGTTATAAA+GGG - chr2_1:3029116-3029135 None:intergenic 30.0%
AAATGGCAGTTATTTAGAAG+TGG - chr2_1:3029166-3029185 None:intergenic 30.0%
ACTATCATAGTTGTCAAATG+CGG + chr2_1:3029273-3029292 Msa0188040:intron 30.0%
!!! TTTTTTGAGAAGGCAAATGT+AGG + chr2_1:3029328-3029347 Msa0188040:intron 30.0%
!! CTTGTAAATTTTAGCCAAGA+AGG - chr2_1:3029577-3029596 None:intergenic 30.0%
TCTTGGCTAAAATTTACAAG+AGG + chr2_1:3029577-3029596 Msa0188040:CDS 30.0%
ATTGCATCTTCAAACAATGT+TGG - chr2_1:3029633-3029652 None:intergenic 30.0%
ACATTGTTTGAAGATGCAAT+AGG + chr2_1:3029633-3029652 Msa0188040:three_prime_UTR 30.0%
!!! TCTTACCATGTCTTTTTTAG+GGG + chr2_1:3029709-3029728 Msa0188040:three_prime_UTR 30.0%
GAAACATAGAAAATGGATAG+AGG + chr2_1:3029875-3029894 Msa0188040:three_prime_UTR 30.0%
TTATAGTAGCAAACTTCCAA+TGG + chr2_1:3029920-3029939 Msa0188040:three_prime_UTR 30.0%
GATGAAGTAAATAGAGAAGA+AGG + chr2_1:3030191-3030210 Msa0188040:three_prime_UTR 30.0%
TCGGTACATTTAAATGTTGT+TGG + chr2_1:3030397-3030416 Msa0188040:three_prime_UTR 30.0%
! TTGGGAATTTTGTGAAAACA+AGG + chr2_1:3030446-3030465 Msa0188040:three_prime_UTR 30.0%
!!! GGTTGTAGACTATTTTAACA+CGG + chr2_1:3030591-3030610 Msa0188040:three_prime_UTR 30.0%
!!! GTTGTAGACTATTTTAACAC+GGG + chr2_1:3030592-3030611 Msa0188040:three_prime_UTR 30.0%
TGGGAGAATAAATAGAGGAA+TGG - chr2_1:3025427-3025446 None:intergenic 35.0%
GAAATGAGAGAGAAAGAAAG+AGG - chr2_1:3025510-3025529 None:intergenic 35.0%
TTCTCTCTCATTTCCATCAA+TGG + chr2_1:3025516-3025535 Msa0188040:exon 35.0%
AGAGTAGACATTCAAGAATG+TGG - chr2_1:3025554-3025573 None:intergenic 35.0%
AACTGCGAGTTAAGAGAAAA+TGG + chr2_1:3025867-3025886 Msa0188040:intron 35.0%
ACTGCGAGTTAAGAGAAAAT+GGG + chr2_1:3025868-3025887 Msa0188040:intron 35.0%
TAAGAGAAAATGGGATGCTA+AGG + chr2_1:3025877-3025896 Msa0188040:intron 35.0%
AAGAGAAAATGGGATGCTAA+GGG + chr2_1:3025878-3025897 Msa0188040:intron 35.0%
TTAGTTATCGGTAAAGTTGG+TGG + chr2_1:3025938-3025957 Msa0188040:intron 35.0%
AAAATCGATAACCACGTCAT+CGG - chr2_1:3025974-3025993 None:intergenic 35.0%
! TAGAGGTGTGTGTATATTCA+AGG + chr2_1:3026057-3026076 Msa0188040:intron 35.0%
GATCACAGCAAATTATGTCA+TGG - chr2_1:3026229-3026248 None:intergenic 35.0%
ATATTGCAAGTACAAAGGGA+TGG - chr2_1:3026292-3026311 None:intergenic 35.0%
AAAACTTAATTCCTACCTCC+AGG - chr2_1:3026530-3026549 None:intergenic 35.0%
TAGTGACTTTGGCAAAATCA+CGG - chr2_1:3026683-3026702 None:intergenic 35.0%
! GTTTCGAATGATAGTGACTT+TGG - chr2_1:3026694-3026713 None:intergenic 35.0%
!!! AGATGCATTTTAACTATGGC+AGG + chr2_1:3026792-3026811 Msa0188040:intron 35.0%
!!! GATGCATTTTAACTATGGCA+GGG + chr2_1:3026793-3026812 Msa0188040:intron 35.0%
! AGCTACCGATTGTTAAAAGA+AGG + chr2_1:3026846-3026865 Msa0188040:CDS 35.0%
! CCTGTCCTTCTTTTAACAAT+CGG - chr2_1:3026854-3026873 None:intergenic 35.0%
GCTGCAAAATTCATCAATAC+AGG - chr2_1:3027025-3027044 None:intergenic 35.0%
TCTTGTTCTTGACGACATTA+TGG + chr2_1:3027058-3027077 Msa0188040:CDS 35.0%
TATCCTTAGGAAACACTTCA+AGG + chr2_1:3027273-3027292 Msa0188040:CDS 35.0%
ATCCTTAGGAAACACTTCAA+GGG + chr2_1:3027274-3027293 Msa0188040:CDS 35.0%
TCACAGTGATAAGGTGTATT+TGG - chr2_1:3027491-3027510 None:intergenic 35.0%
! TATCTCTCTTTTGACACTGA+TGG - chr2_1:3027660-3027679 None:intergenic 35.0%
TAAAGGAGTTGAGGAGATAA+AGG - chr2_1:3028388-3028407 None:intergenic 35.0%
TTAAGGGATTAAAGGAGTTG+AGG - chr2_1:3028397-3028416 None:intergenic 35.0%
!!! GGGAACATATTTTCAAGTTC+AGG + chr2_1:3028607-3028626 Msa0188040:CDS 35.0%
!! ACAGAATTCTAGAGTGTGAA+TGG - chr2_1:3028654-3028673 None:intergenic 35.0%
! TTTGGTGATCCTGAAACAAT+TGG + chr2_1:3028780-3028799 Msa0188040:CDS 35.0%
TGATCCTGAAACAATTGGAA+AGG + chr2_1:3028785-3028804 Msa0188040:CDS 35.0%
TTGAAGACTTTAAGTGCTCT+TGG + chr2_1:3028899-3028918 Msa0188040:CDS 35.0%
TGAAGACTTTAAGTGCTCTT+GGG + chr2_1:3028900-3028919 Msa0188040:CDS 35.0%
CATGGCAGAAAAAAAAGAGA+AGG - chr2_1:3029015-3029034 None:intergenic 35.0%
! AATGACTTTTTGTGGTGAAC+AGG + chr2_1:3029045-3029064 Msa0188040:intron 35.0%
TTGACTATAGCAACATTTGC+AGG - chr2_1:3029091-3029110 None:intergenic 35.0%
CGAGATTAAGCTCGTTATAA+AGG - chr2_1:3029117-3029136 None:intergenic 35.0%
TTATAACGAGCTTAATCTCG+AGG + chr2_1:3029117-3029136 Msa0188040:CDS 35.0%
TGTTGGTATTTGTCCTACAA+GGG - chr2_1:3029616-3029635 None:intergenic 35.0%
ATGTTGGTATTTGTCCTACA+AGG - chr2_1:3029617-3029636 None:intergenic 35.0%
!!! CTTACCATGTCTTTTTTAGG+GGG + chr2_1:3029710-3029729 Msa0188040:three_prime_UTR 35.0%
TGTAAACTGTCTTGTGATAC+TGG + chr2_1:3029758-3029777 Msa0188040:three_prime_UTR 35.0%
CATATTAAGGCAACTACCAT+TGG - chr2_1:3029939-3029958 None:intergenic 35.0%
GGTAGTTGCCTTAATATGAT+TGG + chr2_1:3029941-3029960 Msa0188040:three_prime_UTR 35.0%
ATAATATAGCGAACAGTTGC+AGG + chr2_1:3030227-3030246 Msa0188040:three_prime_UTR 35.0%
CAAAATTCCCAACATCATCT+TGG - chr2_1:3030438-3030457 None:intergenic 35.0%
TTTGTCACAAGCTATTCAGT+GGG + chr2_1:3030519-3030538 Msa0188040:three_prime_UTR 35.0%
!! TCCAAATGTTGATTTCGAGT+TGG + chr2_1:3030558-3030577 Msa0188040:three_prime_UTR 35.0%
TCCAACTCGAAATCAACATT+TGG - chr2_1:3030562-3030581 None:intergenic 35.0%
AAAATAGTCTACAACCCTCT+TGG - chr2_1:3030587-3030606 None:intergenic 35.0%
AACAATGATATACCCGAGTT+TGG + chr2_1:3030616-3030635 Msa0188040:three_prime_UTR 35.0%
!! ATTCTCGTCAATGGGTTGAT+AGG + chr2_1:3025623-3025642 Msa0188040:CDS 40.0%
!! TTCTCGTCAATGGGTTGATA+GGG + chr2_1:3025624-3025643 Msa0188040:CDS 40.0%
ATTGACTGACCACCTTTAGT+GGG - chr2_1:3025908-3025927 None:intergenic 40.0%
AATTGACTGACCACCTTTAG+TGG - chr2_1:3025909-3025928 None:intergenic 40.0%
GGTGTGTGTATATTCAAGGA+AGG + chr2_1:3026061-3026080 Msa0188040:intron 40.0%
TTGTTGTGGAAACTTGCACA+TGG + chr2_1:3026333-3026352 Msa0188040:intron 40.0%
CGGTGAATTTGACAAAATCC+TGG + chr2_1:3026597-3026616 Msa0188040:intron 40.0%
CCGATTGTTAAAAGAAGGAC+AGG + chr2_1:3026851-3026870 Msa0188040:CDS 40.0%
! ATTTTCCAAGCTAGTGCTCT+TGG + chr2_1:3026891-3026910 Msa0188040:CDS 40.0%
! TCTTGGTTGGTGCATTGAAT+GGG + chr2_1:3026908-3026927 Msa0188040:CDS 40.0%
ACCACAGGAAACTTGTGAAA+CGG - chr2_1:3026981-3027000 None:intergenic 40.0%
TTGGGTACTCTAAACCAACA+TGG - chr2_1:3027110-3027129 None:intergenic 40.0%
!! ATGTTGGTTTAGAGTACCCA+AGG + chr2_1:3027109-3027128 Msa0188040:CDS 40.0%
AAGTGTTTCCTAAGGATACG+CGG - chr2_1:3027271-3027290 None:intergenic 40.0%
! TTCCCTTGAAGTGTTTCCTA+AGG - chr2_1:3027279-3027298 None:intergenic 40.0%
GTGATAAGGTGTATTTGGAC+AGG - chr2_1:3027486-3027505 None:intergenic 40.0%
GCTAGCTAGAAGAGAACAAT+AGG - chr2_1:3027856-3027875 None:intergenic 40.0%
TAGCTATGAACATCTTCTGC+AGG + chr2_1:3027964-3027983 Msa0188040:intron 40.0%
TCTTGTACTGAACAATACGC+CGG - chr2_1:3027992-3028011 None:intergenic 40.0%
! TAGCATTTTTCTCCTTTGCC+AGG + chr2_1:3028348-3028367 Msa0188040:intron 40.0%
CACATGCAACCTGTGAAAAT+AGG - chr2_1:3028523-3028542 None:intergenic 40.0%
GGTTGCATGTGCATTACTAA+TGG + chr2_1:3028532-3028551 Msa0188040:intron 40.0%
CTCACCTTTCCAATTGTTTC+AGG - chr2_1:3028792-3028811 None:intergenic 40.0%
CTTCAATATCTGTGCCTATC+TGG - chr2_1:3028885-3028904 None:intergenic 40.0%
AAAGAGAAGGAAAGAAGCAG+CGG - chr2_1:3029002-3029021 None:intergenic 40.0%
ATAGCAACATTTGCAGGATC+TGG - chr2_1:3029085-3029104 None:intergenic 40.0%
GGCAGTTATTTAGAAGTGGA+GGG - chr2_1:3029162-3029181 None:intergenic 40.0%
TGGCAGTTATTTAGAAGTGG+AGG - chr2_1:3029163-3029182 None:intergenic 40.0%
! TGGAGATGATCTTTCGCTTT+TGG - chr2_1:3029357-3029376 None:intergenic 40.0%
GAATGTATAGGGTGCATTTG+CGG + chr2_1:3029470-3029489 Msa0188040:intron 40.0%
! AGCAGTATTGAAGTCCTTCT+TGG + chr2_1:3029560-3029579 Msa0188040:CDS 40.0%
CAGAAGTAGATTTCCCTTGT+AGG + chr2_1:3029600-3029619 Msa0188040:exon 40.0%
ATCACCCCCTAAAAAAGACA+TGG - chr2_1:3029717-3029736 None:intergenic 40.0%
TCAAGTTCAGAGATAGACCA+TGG + chr2_1:3029838-3029857 Msa0188040:three_prime_UTR 40.0%
TTCTTTCACAGGCAAAACCA+TGG - chr2_1:3029858-3029877 None:intergenic 40.0%
! TTTTCACTTGGCTTCGTGTA+TGG + chr2_1:3029974-3029993 Msa0188040:three_prime_UTR 40.0%
AGATTTACACAAGTGCAGCA+GGG + chr2_1:3030313-3030332 Msa0188040:three_prime_UTR 40.0%
ATGTGCATCCAAGATGATGT+TGG + chr2_1:3030427-3030446 Msa0188040:three_prime_UTR 40.0%
TGTGCATCCAAGATGATGTT+GGG + chr2_1:3030428-3030447 Msa0188040:three_prime_UTR 40.0%
TTGTGAAAACAAGGACGATG+TGG + chr2_1:3030455-3030474 Msa0188040:three_prime_UTR 40.0%
! TCGGATATAGGTGAAGCATT+GGG + chr2_1:3030496-3030515 Msa0188040:three_prime_UTR 40.0%
GTTTGTCACAAGCTATTCAG+TGG + chr2_1:3030518-3030537 Msa0188040:three_prime_UTR 40.0%
TGAGAGAGAAAGAAAGAGGG+TGG - chr2_1:3025506-3025525 None:intergenic 45.0%
GACTTGAGATCTGCCATTGA+TGG - chr2_1:3025532-3025551 None:intergenic 45.0%
GTCTGAGGATTCTCGTCAAT+GGG + chr2_1:3025615-3025634 Msa0188040:CDS 45.0%
AGAAAATGGGATGCTAAGGG+AGG + chr2_1:3025881-3025900 Msa0188040:intron 45.0%
TTGACTGACCACCTTTAGTG+GGG - chr2_1:3025907-3025926 None:intergenic 45.0%
!! GATATTTTGCACCGATGACG+TGG + chr2_1:3025960-3025979 Msa0188040:intron 45.0%
! ACGGTGTCCGACCATAATTT+TGG - chr2_1:3026664-3026683 None:intergenic 45.0%
TAACCATGCTCCCTTGGAAA+AGG + chr2_1:3026719-3026738 Msa0188040:intron 45.0%
! AATACCCCCTCCTTTTCCAA+GGG - chr2_1:3026732-3026751 None:intergenic 45.0%
! AAATACCCCCTCCTTTTCCA+AGG - chr2_1:3026733-3026752 None:intergenic 45.0%
TGTCGATAACTGACAGTCCA+CGG - chr2_1:3026827-3026846 None:intergenic 45.0%
! CTCTTGGTTGGTGCATTGAA+TGG + chr2_1:3026907-3026926 Msa0188040:CDS 45.0%
GTTGGTGCATTGAATGGGTA+TGG + chr2_1:3026913-3026932 Msa0188040:intron 45.0%
ACCGTTTCACAAGTTTCCTG+TGG + chr2_1:3026977-3026996 Msa0188040:intron 45.0%
GTTTCACAAGTTTCCTGTGG+TGG + chr2_1:3026980-3026999 Msa0188040:intron 45.0%
! GGTTTAGAGTACCCAAGGTT+TGG + chr2_1:3027114-3027133 Msa0188040:intron 45.0%
GGAATGATTGCTGCGAATGA+TGG + chr2_1:3027223-3027242 Msa0188040:CDS 45.0%
ACCATATTCCGCGTATCCTT+AGG + chr2_1:3027260-3027279 Msa0188040:CDS 45.0%
TCCTAAGGATACGCGGAATA+TGG - chr2_1:3027264-3027283 None:intergenic 45.0%
GTTGAGTTTCAAACTGCTGC+TGG + chr2_1:3027418-3027437 Msa0188040:CDS 45.0%
!! GATCGATTTGATCACCACAC+TGG + chr2_1:3027447-3027466 Msa0188040:CDS 45.0%
GATTTGATCACCACACTGGA+AGG + chr2_1:3027451-3027470 Msa0188040:CDS 45.0%
! GTCTTTTTCTCCTTCCAGTG+TGG - chr2_1:3027464-3027483 None:intergenic 45.0%
GTTGAGGAGATAAAGGTCGA+GGG - chr2_1:3028381-3028400 None:intergenic 45.0%
AGTTGAGGAGATAAAGGTCG+AGG - chr2_1:3028382-3028401 None:intergenic 45.0%
GCATGTGCATTACTAATGGC+TGG + chr2_1:3028536-3028555 Msa0188040:CDS 45.0%
ACTAATGGCTGGTGAAGATC+TGG + chr2_1:3028547-3028566 Msa0188040:CDS 45.0%
TACTGTCTGTCACTATCAGC+TGG + chr2_1:3028689-3028708 Msa0188040:intron 45.0%
AATTGGAAAGGTGAGTGCAC+TGG + chr2_1:3028797-3028816 Msa0188040:intron 45.0%
ACTGGATCATGCATGGATAC+TGG + chr2_1:3028815-3028834 Msa0188040:intron 45.0%
AGACTTTAAGTGCTCTTGGG+TGG + chr2_1:3028903-3028922 Msa0188040:CDS 45.0%
! TTGGGTGGTTGTGAAAGCAT+TGG + chr2_1:3028918-3028937 Msa0188040:CDS 45.0%
AAGAGAAGGAAAGAAGCAGC+GGG - chr2_1:3029001-3029020 None:intergenic 45.0%
TGTGGTGAACAGGAGAACTA+TGG + chr2_1:3029055-3029074 Msa0188040:intron 45.0%
GTGGTGAACAGGAGAACTAT+GGG + chr2_1:3029056-3029075 Msa0188040:intron 45.0%
!!! GCGTAGCGGATTTTTTGAGA+AGG + chr2_1:3029318-3029337 Msa0188040:intron 45.0%
AAGATGCAATAGGAGCTAGC+TGG + chr2_1:3029643-3029662 Msa0188040:three_prime_UTR 45.0%
AACAGTTGCAGGAACAGGAT+TGG + chr2_1:3030238-3030257 Msa0188040:three_prime_UTR 45.0%
CAGATTTACACAAGTGCAGC+AGG + chr2_1:3030312-3030331 Msa0188040:three_prime_UTR 45.0%
! CAACGTGGATGCGTCTTTTT+CGG + chr2_1:3030378-3030397 Msa0188040:three_prime_UTR 45.0%
ACCTATATCCGACACACACA+CGG - chr2_1:3030488-3030507 None:intergenic 45.0%
GTCGGATATAGGTGAAGCAT+TGG + chr2_1:3030495-3030514 Msa0188040:three_prime_UTR 45.0%
!! ATTTCGAGTTGGATGCCAAG+AGG + chr2_1:3030569-3030588 Msa0188040:three_prime_UTR 45.0%
!! TTTCGAGTTGGATGCCAAGA+GGG + chr2_1:3030570-3030589 Msa0188040:three_prime_UTR 45.0%
AAAGAGAGATGCTGCACAGC+CGG - chr2_1:3025399-3025418 None:intergenic 50.0%
GGTCTGAGGATTCTCGTCAA+TGG + chr2_1:3025614-3025633 Msa0188040:CDS 50.0%
ATGCTGGACTACAATGTGCC+TGG + chr2_1:3026509-3026528 Msa0188040:intron 50.0%
ACTACAATGTGCCTGGAGGT+AGG + chr2_1:3026516-3026535 Msa0188040:intron 50.0%
CATACGTAACCATGCTCCCT+TGG + chr2_1:3026713-3026732 Msa0188040:intron 50.0%
CATGCTCCCTTGGAAAAGGA+GGG + chr2_1:3026723-3026742 Msa0188040:intron 50.0%
ATGCTCCCTTGGAAAAGGAG+GGG + chr2_1:3026724-3026743 Msa0188040:intron 50.0%
TCCAAGCTAGTGCTCTTGGT+TGG + chr2_1:3026895-3026914 Msa0188040:CDS 50.0%
!! ACCAACCAAGAGCACTAGCT+TGG - chr2_1:3026899-3026918 None:intergenic 50.0%
GGATTGCTCAATTCCACCAC+AGG - chr2_1:3026996-3027015 None:intergenic 50.0%
TGAACATCTTCTGCAGGCAC+CGG + chr2_1:3027970-3027989 Msa0188040:intron 50.0%
GAGGGTTCAATTCCTGGCAA+AGG - chr2_1:3028363-3028382 None:intergenic 50.0%
AAGGTCGAGGGTTCAATTCC+TGG - chr2_1:3028369-3028388 None:intergenic 50.0%
TGAGTGCACTGGATCATGCA+TGG + chr2_1:3028808-3028827 Msa0188040:intron 50.0%
ACTGCTTGAACTGCACTGCT+GGG - chr2_1:3029546-3029565 None:intergenic 50.0%
TACTGCTTGAACTGCACTGC+TGG - chr2_1:3029547-3029566 None:intergenic 50.0%
! CTGGAGTCCTGTTTTCTGTG+TGG + chr2_1:3029662-3029681 Msa0188040:three_prime_UTR 50.0%
GTCAGCTCCACACAGAAAAC+AGG - chr2_1:3029672-3029691 None:intergenic 50.0%
TAGCGAACAGTTGCAGGAAC+AGG + chr2_1:3030233-3030252 Msa0188040:three_prime_UTR 50.0%
! TTTGGTGGCAAAAACCGAGC+AGG + chr2_1:3030341-3030360 Msa0188040:three_prime_UTR 50.0%
! TTGGTGGCAAAAACCGAGCA+GGG + chr2_1:3030342-3030361 Msa0188040:three_prime_UTR 50.0%
TACTTAAGCCTTCCCCTGCT+CGG - chr2_1:3030358-3030377 None:intergenic 50.0%
GGGAAGGCTTAAGTACAACG+TGG + chr2_1:3030363-3030382 Msa0188040:three_prime_UTR 50.0%
CTATATCCGACACACACACG+GGG - chr2_1:3030486-3030505 None:intergenic 50.0%
CCTATATCCGACACACACAC+GGG - chr2_1:3030487-3030506 None:intergenic 50.0%
AGCAGGGTCATGGAGAAGCT+CGG - chr2_1:3025587-3025606 None:intergenic 55.0%
TCCATGACCCTGCTTTCGAG+TGG + chr2_1:3025593-3025612 Msa0188040:CDS 55.0%
ACCACTCGAAAGCAGGGTCA+TGG - chr2_1:3025597-3025616 None:intergenic 55.0%
CCTCAGACCACTCGAAAGCA+GGG - chr2_1:3025603-3025622 None:intergenic 55.0%
TCCTCAGACCACTCGAAAGC+AGG - chr2_1:3025604-3025623 None:intergenic 55.0%
CTGGACTACAATGTGCCTGG+AGG + chr2_1:3026512-3026531 Msa0188040:intron 55.0%
! CCTCCTTTTCCAAGGGAGCA+TGG - chr2_1:3026725-3026744 None:intergenic 55.0%
CCATGCTCCCTTGGAAAAGG+AGG + chr2_1:3026722-3026741 Msa0188040:intron 55.0%
TGCTCCCTTGGAAAAGGAGG+GGG + chr2_1:3026725-3026744 Msa0188040:intron 55.0%
GACAACTCCCATACACGTCG+TGG + chr2_1:3027080-3027099 Msa0188040:CDS 55.0%
TGGCTGACCACGACGTGTAT+GGG - chr2_1:3027090-3027109 None:intergenic 55.0%
ATGGCTGACCACGACGTGTA+TGG - chr2_1:3027091-3027110 None:intergenic 55.0%
GCTGGGATGAGCTTCAATCG+AGG - chr2_1:3029529-3029548 None:intergenic 55.0%
! GTTGCAGGAACAGGATTGGC+AGG + chr2_1:3030242-3030261 Msa0188040:three_prime_UTR 55.0%
TACACAAGTGCAGCAGGGTC+AGG + chr2_1:3030318-3030337 Msa0188040:three_prime_UTR 55.0%
AAGTGCAGCAGGGTCAGGTT+TGG + chr2_1:3030323-3030342 Msa0188040:three_prime_UTR 55.0%
TGGTGGCAAAAACCGAGCAG+GGG + chr2_1:3030343-3030362 Msa0188040:three_prime_UTR 55.0%
CCCGTGTGTGTGTCGGATAT+AGG + chr2_1:3030484-3030503 Msa0188040:three_prime_UTR 55.0%
! CCCTGCTTTCGAGTGGTCTG+AGG + chr2_1:3025600-3025619 Msa0188040:CDS 60.0%
GCTAAGGGAGGCCCCACTAA+AGG + chr2_1:3025893-3025912 Msa0188040:intron 60.0%
AAGGGAGGCCCCACTAAAGG+TGG + chr2_1:3025896-3025915 Msa0188040:intron 60.0%
ATGGCAGGGAAGCTGAACCG+TGG + chr2_1:3026807-3026826 Msa0188040:intron 60.0%
CACGTCGTGGTCAGCCATGT+TGG + chr2_1:3027093-3027112 Msa0188040:CDS 60.0%
TGCAGCAGGGTCAGGTTTGG+TGG + chr2_1:3030326-3030345 Msa0188040:three_prime_UTR 60.0%
GGCAAAAACCGAGCAGGGGA+AGG + chr2_1:3030347-3030366 Msa0188040:three_prime_UTR 60.0%
GTCAAGCCCCGTGTGTGTGT+CGG + chr2_1:3030477-3030496 Msa0188040:three_prime_UTR 60.0%
CGGTGAGTGTGGTTGGCGTG+GGG - chr2_1:3025379-3025398 None:intergenic 65.0%
CCGGTGAGTGTGGTTGGCGT+GGG - chr2_1:3025380-3025399 None:intergenic 65.0%
CCCACGCCAACCACACTCAC+CGG + chr2_1:3025377-3025396 Msa0188040:five_prime_UTR 65.0%
GCACAGCCGGTGAGTGTGGT+TGG - chr2_1:3025386-3025405 None:intergenic 65.0%
TGCTGCACAGCCGGTGAGTG+TGG - chr2_1:3025390-3025409 None:intergenic 65.0%
GCCGGTGAGTGTGGTTGGCG+TGG - chr2_1:3025381-3025400 None:intergenic 70.0%
TCCGCTACGCGCCGCGATAG+CGG - chr2_1:3029308-3029327 None:intergenic 70.0%
!! CTACGCGCCGCGATAGCGGG+CGG - chr2_1:3029304-3029323 None:intergenic 75.0%
CCGCTACGCGCCGCGATAGC+GGG - chr2_1:3029307-3029326 None:intergenic 75.0%
CCCGCTATCGCGGCGCGTAG+CGG + chr2_1:3029304-3029323 Msa0188040:intron 75.0%
! GGCTGCGCCGCCCGCTATCG+CGG + chr2_1:3029294-3029313 Msa0188040:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3025344 3030644 3025344 ID=Msa0188040;Name=Msa0188040
chr2_1 mRNA 3025344 3030644 3025344 ID=Msa0188040-mRNA-1;Parent=Msa0188040;Name=Msa0188040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=191|0.81|0.91|0.91|1|1|12|1036|342
chr2_1 exon 3025344 3025645 3025344 ID=Msa0188040-mRNA-1:exon:1328;Parent=Msa0188040-mRNA-1
chr2_1 exon 3026175 3026199 3026175 ID=Msa0188040-mRNA-1:exon:1329;Parent=Msa0188040-mRNA-1
chr2_1 exon 3026814 3026929 3026814 ID=Msa0188040-mRNA-1:exon:1330;Parent=Msa0188040-mRNA-1
chr2_1 exon 3027044 3027130 3027044 ID=Msa0188040-mRNA-1:exon:1331;Parent=Msa0188040-mRNA-1
chr2_1 exon 3027220 3027336 3027220 ID=Msa0188040-mRNA-1:exon:1332;Parent=Msa0188040-mRNA-1
chr2_1 exon 3027418 3027506 3027418 ID=Msa0188040-mRNA-1:exon:1333;Parent=Msa0188040-mRNA-1
chr2_1 exon 3027986 3028037 3027986 ID=Msa0188040-mRNA-1:exon:1334;Parent=Msa0188040-mRNA-1
chr2_1 exon 3028533 3028628 3028533 ID=Msa0188040-mRNA-1:exon:1335;Parent=Msa0188040-mRNA-1
chr2_1 exon 3028762 3028806 3028762 ID=Msa0188040-mRNA-1:exon:1336;Parent=Msa0188040-mRNA-1
chr2_1 exon 3028886 3028975 3028886 ID=Msa0188040-mRNA-1:exon:1337;Parent=Msa0188040-mRNA-1
chr2_1 exon 3029067 3029138 3029067 ID=Msa0188040-mRNA-1:exon:1338;Parent=Msa0188040-mRNA-1
chr2_1 exon 3029480 3030644 3029480 ID=Msa0188040-mRNA-1:exon:1339;Parent=Msa0188040-mRNA-1
chr2_1 five_prime_UTR 3025344 3025534 3025344 ID=Msa0188040-mRNA-1:five_prime_utr;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3025535 3025645 3025535 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3026175 3026199 3026175 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3026814 3026929 3026814 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3027044 3027130 3027044 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3027220 3027336 3027220 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3027418 3027506 3027418 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3027986 3028037 3027986 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3028533 3028628 3028533 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3028762 3028806 3028762 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3028886 3028975 3028886 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3029067 3029138 3029067 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 CDS 3029480 3029608 3029480 ID=Msa0188040-mRNA-1:cds;Parent=Msa0188040-mRNA-1
chr2_1 three_prime_UTR 3029609 3030644 3029609 ID=Msa0188040-mRNA-1:three_prime_utr;Parent=Msa0188040-mRNA-1
Gene Sequence

>Msa0188040

ATGGCAGATCTCAAGTCCACATTCTTGAATGTCTACTCTGTTCTCAAATCCGAGCTTCTCCATGACCCTGCTTTCGAGTGGTCTGAGGATTCTCGTCAATGGGTTGATAGGTTTCAAGTTTATGATGATCCTACAAGGAAGCTGAACCGTGGACTGTCAGTTATCGACAGCTACCGATTGTTAAAAGAAGGACAGGCATTGAATGATGACGAAATTTTCCAAGCTAGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTTCTTGTTCTTGACGACATTATGGACAACTCCCATACACGTCGTGGTCAGCCATGTTGGTTTAGAGTACCCAAGGTTGGAATGATTGCTGCGAATGATGGAGTTCTACTAAGAAACCATATTCCGCGTATCCTTAGGAAACACTTCAAGGGAAAGCCGTATTATGTTGAACTTCTTGATTTATTCAATGAGGTTGAGTTTCAAACTGCTGCTGGACAGATGATCGATTTGATCACCACACTGGAAGGAGAAAAAGACCTGTCCAAATACACCTTATCACTGCACCGGCGTATTGTTCAGTACAAGACTGCCTATTATTCTTTTTACCTTCCTGTTGCATGTGCATTACTAATGGCTGGTGAAGATCTGGATAACCATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATATTTTCAAGTTCAGGATGATTATTTGGATTGCTTTGGTGATCCTGAAACAATTGGAAAGATAGGCACAGATATTGAAGACTTTAAGTGCTCTTGGGTGGTTGTGAAAGCATTGGAACTTTGCAATGAAGAACAAAAGAAGGTTTTACATGAGAACTATGGGAAGCCAGATCCTGCAAATGTTGCTATAGTCAAGACCCTTTATAACGAGCTTAATCTCGAGGGTGCATTTGCGGAGTATGAGAGTGCGAGCTATGAGAAGCTTGTAACCTCGATTGAAGCTCATCCCAGCAGTGCAGTTCAAGCAGTATTGAAGTCCTTCTTGGCTAAAATTTACAAGAGGCAGAAGTAG
Protein sequence

>Msa0188040

MADLKSTFLNVYSVLKSELLHDPAFEWSEDSRQWVDRFQVYDDPTRKLNRGLSVIDSYRLLKEGQALNDDEIFQASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILRKHFKGKPYYVELLDLFNEVEFQTAAGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGEDLDNHVDVKNILVEMGTYFQVQDDYLDCFGDPETIGKIGTDIEDFKCSWVVVKALELCNEEQKKVLHENYGKPDPANVAIVKTLYNELNLEGAFAEYESASYEKLVTSIEAHPSSAVQAVLKSFLAKIYKRQK*