AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600390 MtrunA17_Chr4g0025361 97.778 180 1 1 1 180 1 177 1.40e-129 360
Msa0600390 MtrunA17_Chr2g0322221 71.649 194 40 7 1 180 3 195 4.95e-85 248
Msa0600390 MtrunA17_Chr4g0063931 56.069 173 67 4 7 173 12 181 2.93e-55 173
Msa0600390 MtrunA17_Chr4g0011841 56.173 162 57 4 11 160 25 184 3.66e-49 158
Msa0600390 MtrunA17_Chr4g0056521 46.500 200 72 6 8 180 17 208 1.23e-47 154
Msa0600390 MtrunA17_Chr5g0413381 52.288 153 65 3 9 155 12 162 6.16e-47 152
Msa0600390 MtrunA17_Chr5g0419871 45.570 158 73 4 1 154 7 155 1.76e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600390 AT1G08465.1 57.895 190 64 6 1 180 1 184 1.09e-68 207
Msa0600390 AT2G26580.2 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0600390 AT2G26580.1 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0600390 AT2G45190.1 53.061 196 69 6 8 180 22 217 4.32e-55 174
Msa0600390 AT4G00180.1 47.642 212 70 5 7 180 21 229 1.08e-47 155
Msa0600390 AT4G00180.2 45.274 201 69 5 18 180 1 198 2.60e-37 128
Msa0600390 AT1G23420.1 41.818 165 76 3 10 158 20 180 1.37e-36 127
Msa0600390 AT1G23420.2 41.818 165 76 3 10 158 51 211 4.99e-36 126
Msa0600390 AT2G45190.2 60.952 105 30 3 87 180 49 153 7.14e-34 118
Msa0600390 AT1G69180.1 42.000 150 71 2 9 154 19 156 9.11e-32 113

Find 55 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTTTGTTGTAGGATT+AGG 0.226265 4_2:+41545327 None:intergenic
TCCACATCTAACTGTTACTA+TGG 0.283760 4_2:+41550342 None:intergenic
GTGGCTGATATCTGGATTAC+TGG 0.287474 4_2:+41546765 None:intergenic
GCCTCCCTGTGGCTGATATC+TGG 0.289400 4_2:+41546757 None:intergenic
TGTGCTTAGTGGATTTATAA+AGG 0.317520 4_2:+41552334 None:intergenic
CAGTCTCCAATCTTTGTTGT+AGG 0.329985 4_2:+41545321 None:intergenic
CCTAATCCTACAACAAAGAT+TGG 0.330749 4_2:-41545327 Msa0600390:three_prime_UTR
GAAGCAAGCAGCAAGGAAAT+TGG 0.345303 4_2:-41548373 Msa0600390:CDS
GGATTCTACTGATATAAATA+TGG 0.354690 4_2:-41545404 Msa0600390:exon
GGAGGAAATTCAAAGGATTA+AGG 0.360502 4_2:-41546788 Msa0600390:CDS
CATTTCCCTCATATTCACTT+TGG 0.399992 4_2:-41545479 Msa0600390:CDS
ATTTCCCTCATATTCACTTT+GGG 0.416154 4_2:-41545478 Msa0600390:CDS
AAATAACTTACTTAATGAAC+CGG 0.422652 4_2:+41547214 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4_2:+41550271 None:intergenic
TGCTTCCCAAAGTGAATATG+AGG 0.444364 4_2:+41545473 None:intergenic
GGGACTCGTGAAAAGACTAA+TGG 0.445379 4_2:-41545425 Msa0600390:CDS
CGACGAATGGGAGGAATCCT+AGG 0.445790 4_2:+41548289 None:intergenic
TTCGTAACAAAAGAAAGAAA+AGG 0.448400 4_2:+41545191 None:intergenic
ATGGTTAACAAACTGCTGTA+TGG 0.448489 4_2:+41550361 None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4_2:-41547233 Msa0600390:CDS
TGGGAAGCAGCAAGCAAAGT+TGG 0.453770 4_2:-41545459 Msa0600390:CDS
GAGTTTGAGAGTGTGCTTAG+TGG 0.460152 4_2:+41552323 None:intergenic
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4_2:-41550266 Msa0600390:intron
CAGCAAGCAAAGTTGGATCA+TGG 0.484670 4_2:-41545452 Msa0600390:CDS
CAACAAAATAGCATCATTTG+AGG 0.493091 4_2:-41548332 Msa0600390:CDS
AGCAAGCAAAGTTGGATCAT+GGG 0.508095 4_2:-41545451 Msa0600390:CDS
TAAATCTGTGAAAATTAATG+AGG 0.510309 4_2:-41545354 Msa0600390:three_prime_UTR
TCGTAACAAAAGAAAGAAAA+GGG 0.512059 4_2:+41545192 None:intergenic
AGAGTGTGACTCACGACGAA+TGG 0.516345 4_2:+41548276 None:intergenic
TAGTAGAGCACGAACATCCT+AGG 0.516780 4_2:-41548306 Msa0600390:CDS
AGAATACTATACCGCTAGAA+TGG 0.519749 4_2:+41552204 None:intergenic
GAGTGTGACTCACGACGAAT+GGG 0.531160 4_2:+41548277 None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4_2:+41550265 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4_2:+41550283 None:intergenic
AAACATACCTGAGGGAGTTG+AGG 0.577695 4_2:+41550259 None:intergenic
GCAAAGTTGGATCATGGGGA+AGG 0.577773 4_2:-41545446 Msa0600390:CDS
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4_2:+41547228 None:intergenic
GTAATCCAGATATCAGCCAC+AGG 0.588300 4_2:-41546762 Msa0600390:CDS
TAATTTGCTATCAGTTAACA+TGG 0.590629 4_2:-41550311 Msa0600390:CDS
TTTGTAGGGAGGAAATTCAA+AGG 0.595432 4_2:-41546795 Msa0600390:intron
CAAAGTTGGATCATGGGGAA+GGG 0.605243 4_2:-41545445 Msa0600390:CDS
CTACAACAAAGATTGGAGAC+TGG 0.605903 4_2:-41545320 Msa0600390:three_prime_UTR
GCAAGCAAAGTTGGATCATG+GGG 0.621810 4_2:-41545450 Msa0600390:CDS
CTGAGCTGAAAGCCTCCCTG+TGG 0.623676 4_2:+41546746 None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG 0.634037 4_2:-41546743 Msa0600390:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.635233 4_2:+41550262 None:intergenic
AAGCACACTCTCAAACTCAA+AGG 0.636057 4_2:-41552318 Msa0600390:five_prime_UTR
ACCATAGTAACAGTTAGATG+TGG 0.643235 4_2:-41550343 Msa0600390:CDS
TGTGACTCACGACGAATGGG+AGG 0.645995 4_2:+41548280 None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG 0.659976 4_2:-41548380 Msa0600390:CDS
GCTTCCCAAAGTGAATATGA+GGG 0.661736 4_2:+41545474 None:intergenic
TCCAGATATCAGCCACAGGG+AGG 0.683704 4_2:-41546758 Msa0600390:CDS
TAATCCAGATATCAGCCACA+GGG 0.696359 4_2:-41546761 Msa0600390:CDS
CTTCTGCAACACCATTCTAG+CGG 0.715968 4_2:-41552215 Msa0600390:intron
TTTGCTATCAGTTAACATGG+TGG 0.723467 4_2:-41550308 Msa0600390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTATTTTTTTTT+AGG - chr4_2:41547796-41547815 Msa0600390:intron 0.0%
!!! ATTTTATATATAAAAAAAAA+AGG + chr4_2:41548366-41548385 None:intergenic 0.0%
!! AAAAAATATATAATAATAAA+TGG + chr4_2:41552320-41552339 None:intergenic 0.0%
!!! TTTATTATTATATATTTTTT+AGG - chr4_2:41552320-41552339 Msa0600390:five_prime_UTR 0.0%
!!! TTATTATTATATATTTTTTA+GGG - chr4_2:41552321-41552340 Msa0600390:five_prime_UTR 0.0%
!! AAAAAAAAAATCAAAAGATA+TGG - chr4_2:41545945-41545964 Msa0600390:intron 10.0%
!!! TTTTTTATTTTTTTTTAGGA+TGG - chr4_2:41547800-41547819 Msa0600390:intron 10.0%
!!! TTTTTATTTTTTTTTAGGAT+GGG - chr4_2:41547801-41547820 Msa0600390:intron 10.0%
!! CTATTAAAAAAACATAAATT+AGG + chr4_2:41548090-41548109 None:intergenic 10.0%
!!! TTAATAGTAAAAATGATTTT+TGG - chr4_2:41548103-41548122 Msa0600390:intron 10.0%
!!! CAATTTTTTTTATAAAAAAC+TGG + chr4_2:41548711-41548730 None:intergenic 10.0%
!!! TAATTTTTGTATTAACTTTT+TGG - chr4_2:41549208-41549227 Msa0600390:intron 10.0%
!!! AATTTGTTACTTAAAAATAA+TGG + chr4_2:41549502-41549521 None:intergenic 10.0%
!!! TGTTTTGTATATATTTATAT+AGG - chr4_2:41549528-41549547 Msa0600390:intron 10.0%
!! AAATAAATAAATAGAAACAT+TGG + chr4_2:41550553-41550572 None:intergenic 10.0%
!!! TGTTTCTATTTATTTATTTT+TGG - chr4_2:41550554-41550573 Msa0600390:intron 10.0%
!! AATGTATTACTATATAATAA+AGG - chr4_2:41551651-41551670 Msa0600390:intron 10.0%
!! ATGTATTACTATATAATAAA+GGG - chr4_2:41551652-41551671 Msa0600390:intron 10.0%
!! TTGTTGAAAAAACAATTAAT+GGG + chr4_2:41545311-41545330 None:intergenic 15.0%
!! TGAGATCAAATAATATATAA+AGG - chr4_2:41545411-41545430 Msa0600390:exon 15.0%
!! TTTCTCATAAAATATAAGTT+AGG + chr4_2:41545610-41545629 None:intergenic 15.0%
!! TAATATCAGAATCAAATATT+AGG - chr4_2:41545898-41545917 Msa0600390:intron 15.0%
!! AATATCAGAATCAAATATTA+GGG - chr4_2:41545899-41545918 Msa0600390:intron 15.0%
!! TTAAAACAAAACAAAAACAA+AGG + chr4_2:41545927-41545946 None:intergenic 15.0%
!! TCTTTATAGAATGTAATTAA+GGG + chr4_2:41546113-41546132 None:intergenic 15.0%
!! AAAGAAACAAAATGTATATA+TGG + chr4_2:41546755-41546774 None:intergenic 15.0%
!! TTAGTGAAATTAATTGTAAA+TGG - chr4_2:41547025-41547044 Msa0600390:intron 15.0%
!!! TATTATATGTGTTTTGAAAT+TGG - chr4_2:41547055-41547074 Msa0600390:intron 15.0%
!! AAATTAGTAAGTACATAATT+TGG + chr4_2:41547577-41547596 None:intergenic 15.0%
!!! TTTTATTTTTTTTTAGGATG+GGG - chr4_2:41547802-41547821 Msa0600390:intron 15.0%
!! ATTTATTAACAGATTTAGAA+AGG - chr4_2:41548032-41548051 Msa0600390:intron 15.0%
!!! ATTTTTGGTAAAAACAAAAA+GGG - chr4_2:41548118-41548137 Msa0600390:intron 15.0%
!!! TATACTGAAGTTTTATTTTT+TGG - chr4_2:41548247-41548266 Msa0600390:intron 15.0%
!! ATTTATATAGACAAATTCTA+TGG - chr4_2:41548312-41548331 Msa0600390:CDS 15.0%
!!! GTAAAAATAGTTTTTTTTTG+TGG + chr4_2:41548681-41548700 None:intergenic 15.0%
!!! TTTTATTTAATTGTGTCATT+TGG + chr4_2:41548798-41548817 None:intergenic 15.0%
!! AATTAGCAATAGATTAATTA+AGG + chr4_2:41549037-41549056 None:intergenic 15.0%
!!! TTTTTCTTCATCAATTTATT+TGG - chr4_2:41549569-41549588 Msa0600390:intron 15.0%
!!! TTTACTTTTTATTTGAAGAA+AGG - chr4_2:41550420-41550439 Msa0600390:intron 15.0%
!!! TTACTTTTTATTTGAAGAAA+GGG - chr4_2:41550421-41550440 Msa0600390:intron 15.0%
!!! TCTTTAAATGTATTTTTTGT+AGG + chr4_2:41550460-41550479 None:intergenic 15.0%
!!! ATTAAATGTTTTTTGATCAA+AGG + chr4_2:41550919-41550938 None:intergenic 15.0%
!! ATCAAAAAACATTTAATTGT+AGG - chr4_2:41550922-41550941 Msa0600390:intron 15.0%
!! AATATAAAAAAATCTAAAGG+TGG - chr4_2:41551570-41551589 Msa0600390:intron 15.0%
!!! ATTTTGTAAAACTTTAAATG+GGG + chr4_2:41551634-41551653 None:intergenic 15.0%
!!! CATTTTGTAAAACTTTAAAT+GGG + chr4_2:41551635-41551654 None:intergenic 15.0%
!!! ACATTTTGTAAAACTTTAAA+TGG + chr4_2:41551636-41551655 None:intergenic 15.0%
!!! ATTTTGAATATAGTACTTAA+TGG + chr4_2:41551843-41551862 None:intergenic 15.0%
!!! TATATTTTTTAGGGTTATTA+TGG - chr4_2:41552330-41552349 Msa0600390:five_prime_UTR 15.0%
!! CTTGTTGAAAAAACAATTAA+TGG + chr4_2:41545312-41545331 None:intergenic 20.0%
!! TATTGAAAAATCAACCTTAT+AGG - chr4_2:41545515-41545534 Msa0600390:intron 20.0%
!! TTGATCTCTCAAATTAAATT+AGG + chr4_2:41545754-41545773 None:intergenic 20.0%
!! CTCTTTATAGAATGTAATTA+AGG + chr4_2:41546114-41546133 None:intergenic 20.0%
!! AATTGTTGTAGAAATAAAGA+GGG + chr4_2:41546272-41546291 None:intergenic 20.0%
!! AAATTGTTGTAGAAATAAAG+AGG + chr4_2:41546273-41546292 None:intergenic 20.0%
!! AGATGATAAAAGATAGAAAT+TGG + chr4_2:41546494-41546513 None:intergenic 20.0%
!! AAACAAAATGTATATATGGT+TGG + chr4_2:41546751-41546770 None:intergenic 20.0%
!! TTACTAATGCTGAAAATAAA+TGG + chr4_2:41546785-41546804 None:intergenic 20.0%
!! TACAATTAATTTCACTAACT+AGG + chr4_2:41547023-41547042 None:intergenic 20.0%
!! TGTTTCATATTCATCTTATT+TGG - chr4_2:41547221-41547240 Msa0600390:intron 20.0%
!! GTGTATTTAATACATTGAAA+AGG + chr4_2:41547616-41547635 None:intergenic 20.0%
!! GTATATAGTTGAACTTATTA+AGG - chr4_2:41547761-41547780 Msa0600390:intron 20.0%
!! TGACATTGTTATAATCTTAA+AGG + chr4_2:41547903-41547922 None:intergenic 20.0%
!! TAGAATACATAAATTAGCTA+TGG - chr4_2:41547972-41547991 Msa0600390:intron 20.0%
!!! GATTTTTGGTAAAAACAAAA+AGG - chr4_2:41548117-41548136 Msa0600390:intron 20.0%
!!! AACTTCAGTATAATTTTTGA+AGG + chr4_2:41548239-41548258 None:intergenic 20.0%
!! TTTGTCTATATAAATTAGAG+TGG + chr4_2:41548307-41548326 None:intergenic 20.0%
!!! GAGTAAAAACTTTTTTTAGA+AGG - chr4_2:41548393-41548412 Msa0600390:CDS 20.0%
!! AATGACATAAAAGAGATATT+TGG + chr4_2:41548445-41548464 None:intergenic 20.0%
!!! ACACTCAAATACTATTTTTA+CGG - chr4_2:41548582-41548601 Msa0600390:intron 20.0%
!!! AAAATAGTTTTTTTTTGTGG+TGG + chr4_2:41548678-41548697 None:intergenic 20.0%
!! CTAAATTTGAATAAACAAAG+AGG - chr4_2:41549259-41549278 Msa0600390:intron 20.0%
!! AGAAAAAAAATTCCCAAATT+GGG + chr4_2:41549556-41549575 None:intergenic 20.0%
!! AAGAAAAAAAATTCCCAAAT+TGG + chr4_2:41549557-41549576 None:intergenic 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG - chr4_2:41549708-41549727 Msa0600390:intron 20.0%
!! TGGTAATTAATTATTGACAT+TGG - chr4_2:41549728-41549747 Msa0600390:intron 20.0%
!! AAATAACTTACTTAATGAAC+CGG + chr4_2:41550251-41550270 None:intergenic 20.0%
!!! TGGTGATGAATATTATATTT+TGG - chr4_2:41550574-41550593 Msa0600390:intron 20.0%
!!! TCTTATTTGCTTTACTTAAA+CGG + chr4_2:41550628-41550647 None:intergenic 20.0%
!!! TATTAGGTCAATTTTTATAC+GGG + chr4_2:41550815-41550834 None:intergenic 20.0%
!!! CTATTAGGTCAATTTTTATA+CGG + chr4_2:41550816-41550835 None:intergenic 20.0%
!!! TTTTTTTTTTGACAAAACCA+TGG + chr4_2:41551129-41551148 None:intergenic 20.0%
!! AAAAAAAAAAAACATTGCCA+TGG - chr4_2:41551139-41551158 Msa0600390:intron 20.0%
!!! TTAAAAAGCTTTTGATAACA+CGG - chr4_2:41551444-41551463 Msa0600390:intron 20.0%
!! TTCTCATTTGAACATTAATA+TGG + chr4_2:41551543-41551562 None:intergenic 20.0%
!!! TTTTGTAAAACTTTAAATGG+GGG + chr4_2:41551633-41551652 None:intergenic 20.0%
!!! CTTATTTTTCTGTTAATTAG+TGG + chr4_2:41551817-41551836 None:intergenic 20.0%
!! CACTAATTAACAGAAAAATA+AGG - chr4_2:41551815-41551834 Msa0600390:intron 20.0%
!! TATGGTTGAGAAAATTAAAA+TGG + chr4_2:41551893-41551912 None:intergenic 20.0%
!! AAAGTATAATATATGGCATA+TGG + chr4_2:41551911-41551930 None:intergenic 20.0%
!! GACTTGTAAAGTATAATATA+TGG + chr4_2:41551918-41551937 None:intergenic 20.0%
!! ATATGTTTATATATATGCAG+TGG - chr4_2:41551957-41551976 Msa0600390:intron 20.0%
!! TATGTTTATATATATGCAGT+GGG - chr4_2:41551958-41551977 Msa0600390:intron 20.0%
!!! TCATTAATTTTCACAGATTT+AGG + chr4_2:41552109-41552128 None:intergenic 20.0%
!! TAAATCTGTGAAAATTAATG+AGG - chr4_2:41552108-41552127 Msa0600390:intron 20.0%
! GAGAAAAAGAAAAATGTCAA+TGG - chr4_2:41545184-41545203 Msa0600390:three_prime_UTR 25.0%
! TATTTCATCACCATCTAATT+TGG - chr4_2:41545349-41545368 Msa0600390:three_prime_UTR 25.0%
! ATACAAGCATTATAACCAAT+AGG + chr4_2:41545498-41545517 None:intergenic 25.0%
! TTAATTCCAATGTTCCTATA+AGG + chr4_2:41545532-41545551 None:intergenic 25.0%
! CATATATAAACTTCTTACCA+TGG + chr4_2:41545665-41545684 None:intergenic 25.0%
! TGGTAAGAAGTTTATATATG+TGG - chr4_2:41545665-41545684 Msa0600390:intron 25.0%
!! GATTTTCAATGAACAAAGTT+AGG - chr4_2:41545723-41545742 Msa0600390:intron 25.0%
! AAAAAGACAAGAAAGAAATC+TGG + chr4_2:41546029-41546048 None:intergenic 25.0%
!! GTAAATGTTTTCACATTTTG+AGG - chr4_2:41546213-41546232 Msa0600390:intron 25.0%
! TTAATCTACTTTCTCAAAAG+AGG + chr4_2:41546355-41546374 None:intergenic 25.0%
! TTGAGAAAGTAGATTAAATC+TGG - chr4_2:41546358-41546377 Msa0600390:intron 25.0%
! GCTGAAATATCTTAAAACTT+AGG + chr4_2:41546823-41546842 None:intergenic 25.0%
!!! TTTTAAGATATTTCAGCCTT+TGG - chr4_2:41546826-41546845 Msa0600390:intron 25.0%
!! TGTTTGAAGAATGTATGTTT+TGG - chr4_2:41546868-41546887 Msa0600390:intron 25.0%
! CATAAAAACAACAAAGCAAA+GGG + chr4_2:41546934-41546953 None:intergenic 25.0%
!!! CTAGGTTTTTTTGTTTTGAA+CGG + chr4_2:41547005-41547024 None:intergenic 25.0%
!!! ATGTGTTTTGAAATTGGAAA+TGG - chr4_2:41547061-41547080 Msa0600390:intron 25.0%
!!! TAATTTGCTATCAGTTAACA+TGG - chr4_2:41547151-41547170 Msa0600390:intron 25.0%
! TAAGTTCAACTATATACACT+AGG + chr4_2:41547758-41547777 None:intergenic 25.0%
! TGTTATAATCTTAAAGGTGA+AGG + chr4_2:41547897-41547916 None:intergenic 25.0%
!! CTTTCTCATTTTCTCATTAT+AGG - chr4_2:41548009-41548028 Msa0600390:intron 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG - chr4_2:41548150-41548169 Msa0600390:intron 25.0%
!!! TAATCGCTTTTTGTAGATTT+TGG - chr4_2:41548187-41548206 Msa0600390:intron 25.0%
!!! TTTTTTTAGAAGGAAAACGA+AGG - chr4_2:41548403-41548422 Msa0600390:intron 25.0%
!!! TTTTTTGACATTGAACCATA+TGG - chr4_2:41548841-41548860 Msa0600390:intron 25.0%
!! AGTGAAATAGTAATGCTTTT+AGG - chr4_2:41548963-41548982 Msa0600390:intron 25.0%
! TGATGCTTAATTTATTGAGT+CGG - chr4_2:41549473-41549492 Msa0600390:intron 25.0%
! ATTTATATAGGTTCCCAATT+TGG - chr4_2:41549540-41549559 Msa0600390:intron 25.0%
! TTTATATAGGTTCCCAATTT+GGG - chr4_2:41549541-41549560 Msa0600390:intron 25.0%
! TGGTAATTGTAAACTATTAC+TGG - chr4_2:41549748-41549767 Msa0600390:intron 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG + chr4_2:41549858-41549877 None:intergenic 25.0%
! CTTGAAGAAATGGTTAATTT+AGG + chr4_2:41549867-41549886 None:intergenic 25.0%
! TTTGACAAACTAGTAGATTA+AGG + chr4_2:41550025-41550044 None:intergenic 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG - chr4_2:41550030-41550049 Msa0600390:intron 25.0%
!! ATAGAAACATTGGAGAATTT+TGG + chr4_2:41550543-41550562 None:intergenic 25.0%
!!! ATTTTGGAGTACTTTTCTTT+AGG - chr4_2:41550590-41550609 Msa0600390:intron 25.0%
! CGTATAAAAATTGACCTAAT+AGG - chr4_2:41550814-41550833 Msa0600390:intron 25.0%
!!! GGTGTAATTTTTTTCCTATT+AGG + chr4_2:41550831-41550850 None:intergenic 25.0%
!! TTTTGATCAAAGGTTTAAGA+TGG + chr4_2:41550909-41550928 None:intergenic 25.0%
! ATGTAATAGATCTCTAAATG+AGG - chr4_2:41551074-41551093 Msa0600390:intron 25.0%
! AATTAACATGTCTTCATGTA+GGG - chr4_2:41551516-41551535 Msa0600390:intron 25.0%
!! AACAAAGAAAAGAGTATATC+AGG - chr4_2:41551738-41551757 Msa0600390:intron 25.0%
! GGATTCTACTGATATAAATA+TGG - chr4_2:41552058-41552077 Msa0600390:intron 25.0%
! GTCAAACATAGAAAAAACAA+AGG + chr4_2:41552087-41552106 None:intergenic 25.0%
!! TGTTTCCCTTTTCTTTTTTT+TGG - chr4_2:41552206-41552225 Msa0600390:intron 25.0%
! AAAAGGGAAACATATATGTA+AGG + chr4_2:41552257-41552276 None:intergenic 25.0%
! TCGTAACAAAAGAAAGAAAA+GGG + chr4_2:41552273-41552292 None:intergenic 25.0%
! TTCGTAACAAAAGAAAGAAA+AGG + chr4_2:41552274-41552293 None:intergenic 25.0%
!! TGTGCTTAGTGGATTTATAA+AGG + chr4_2:41545131-41545150 None:intergenic 30.0%
ACTCAATTTGCCAAATTAGA+TGG + chr4_2:41545362-41545381 None:intergenic 30.0%
AATCAACCTTATAGGAACAT+TGG - chr4_2:41545523-41545542 Msa0600390:intron 30.0%
GAAAATTCACTTCAACTTGA+TGG + chr4_2:41545560-41545579 None:intergenic 30.0%
TATCTTCATAAACTCTACCA+TGG - chr4_2:41545645-41545664 Msa0600390:intron 30.0%
TAGCTAAAAGTCCATGATTA+GGG - chr4_2:41545874-41545893 Msa0600390:intron 30.0%
TCTGATATTAACCCTAATCA+TGG + chr4_2:41545888-41545907 None:intergenic 30.0%
AGAATGTAATTAAGGGATCA+AGG + chr4_2:41546106-41546125 None:intergenic 30.0%
! TATAAAGAGAGTGTGAATGA+AGG - chr4_2:41546125-41546144 Msa0600390:intron 30.0%
!! AATTTGCTATGCTATGAGAA+AGG + chr4_2:41546325-41546344 None:intergenic 30.0%
GAGTGAGTAATAATAACTAG+TGG - chr4_2:41546397-41546416 Msa0600390:intron 30.0%
ATAACTAGTGGTTAAGACTT+TGG - chr4_2:41546409-41546428 Msa0600390:intron 30.0%
!!! TGAGAGAGAGTTACTTTTAA+GGG + chr4_2:41546659-41546678 None:intergenic 30.0%
AAGATGATAAATAAGCTAGC+AGG + chr4_2:41546724-41546743 None:intergenic 30.0%
AAAATGTATATATGGTTGGC+AGG + chr4_2:41546747-41546766 None:intergenic 30.0%
AAACCAATCAACATTACCAA+AGG + chr4_2:41546845-41546864 None:intergenic 30.0%
! TTGGTGTATGAATTTTCTCT+TGG - chr4_2:41546887-41546906 Msa0600390:intron 30.0%
GCATAAAAACAACAAAGCAA+AGG + chr4_2:41546935-41546954 None:intergenic 30.0%
TGAATATGAAACATACCTGA+GGG + chr4_2:41547214-41547233 None:intergenic 30.0%
ATGAATATGAAACATACCTG+AGG + chr4_2:41547215-41547234 None:intergenic 30.0%
TTGATACCACATCAATTTGT+TGG + chr4_2:41547401-41547420 None:intergenic 30.0%
TATTATAGCAAGTGCATGTA+TGG + chr4_2:41547456-41547475 None:intergenic 30.0%
!! ACATGCACTTGCTATAATAA+AGG - chr4_2:41547457-41547476 Msa0600390:intron 30.0%
ATCTTCAAGAATTATCACGA+AGG + chr4_2:41547490-41547509 None:intergenic 30.0%
AGTACATAATTTGGAAGTCA+CGG + chr4_2:41547568-41547587 None:intergenic 30.0%
TTTGTCATGTTCATGTAACA+TGG + chr4_2:41547715-41547734 None:intergenic 30.0%
!!! ATTTTTTTTTAGGATGGGGA+AGG - chr4_2:41547806-41547825 Msa0600390:intron 30.0%
!!! TTTTTTTTTAGGATGGGGAA+GGG - chr4_2:41547807-41547826 Msa0600390:intron 30.0%
TTGGACTTTAATTCAATGAG+AGG + chr4_2:41547945-41547964 None:intergenic 30.0%
TTATGTATTCTAGTGTGTGT+TGG + chr4_2:41547964-41547983 None:intergenic 30.0%
TTAGGGAGAGAAATTTAGAA+CGG + chr4_2:41548072-41548091 None:intergenic 30.0%
!! AACCAATGGTTTGTTTCTTT+AGG - chr4_2:41548164-41548183 Msa0600390:intron 30.0%
TACCTAAAGAAACAAACCAT+TGG + chr4_2:41548169-41548188 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - chr4_2:41548633-41548652 Msa0600390:intron 30.0%
!!! AGTTTTTTTTTGTGGTGGTT+GGG + chr4_2:41548673-41548692 None:intergenic 30.0%
!!! TAGTTTTTTTTTGTGGTGGT+TGG + chr4_2:41548674-41548693 None:intergenic 30.0%
CAATGTCAAAAAAGCTTCTA+AGG + chr4_2:41548834-41548853 None:intergenic 30.0%
!! TAGTAATGCTTTTAGGAGTT+AGG - chr4_2:41548970-41548989 Msa0600390:intron 30.0%
CAACAAAATAGCATCATTTG+AGG - chr4_2:41549130-41549149 Msa0600390:intron 30.0%
ATTTGTCTTGCTTGAAGAAA+TGG + chr4_2:41549877-41549896 None:intergenic 30.0%
TCTTCAAGCAAGACAAATAA+AGG - chr4_2:41549879-41549898 Msa0600390:intron 30.0%
!! TTCCATATTGTCTTGTTTGT+AGG - chr4_2:41550652-41550671 Msa0600390:intron 30.0%
!! TCCATATTGTCTTGTTTGTA+GGG - chr4_2:41550653-41550672 Msa0600390:intron 30.0%
!!! TTGTGGTTGAATCCTTTTTT+TGG + chr4_2:41550955-41550974 None:intergenic 30.0%
TTTGTGTGTAGAGAATATTG+TGG + chr4_2:41550972-41550991 None:intergenic 30.0%
ACAATATTCTCTACACACAA+AGG - chr4_2:41550971-41550990 Msa0600390:intron 30.0%
!!! TGTTTTTTCTCATTTCGTGA+AGG + chr4_2:41551047-41551066 None:intergenic 30.0%
TAGAGATCTATTACATCTGT+TGG + chr4_2:41551070-41551089 None:intergenic 30.0%
ATTAAAACACAACATTGCCA+TGG - chr4_2:41551109-41551128 Msa0600390:intron 30.0%
! CATTGAGATGAAAGCTTTTT+GGG - chr4_2:41551198-41551217 Msa0600390:intron 30.0%
! TTTGGGAAAGAATCCAATTT+TGG - chr4_2:41551215-41551234 Msa0600390:intron 30.0%
CAATCAAAACACGTTGAAAA+CGG - chr4_2:41551373-41551392 Msa0600390:intron 30.0%
CAATTAACATGTCTTCATGT+AGG - chr4_2:41551515-41551534 Msa0600390:intron 30.0%
GTATTCTACTAAAAATCACG+AGG + chr4_2:41551597-41551616 None:intergenic 30.0%
ATTTCCCTCATATTCACTTT+GGG - chr4_2:41551984-41552003 Msa0600390:intron 30.0%
!!! TTCCCTTTTCTTTTTTTTGG+TGG - chr4_2:41552209-41552228 Msa0600390:intron 30.0%
CACCACCAAAAAAAAGAAAA+GGG + chr4_2:41552214-41552233 None:intergenic 30.0%
AGAATACTATACCGCTAGAA+TGG + chr4_2:41545261-41545280 None:intergenic 35.0%
GGAAAACACAAAAGAAGAGA+TGG + chr4_2:41545290-41545309 None:intergenic 35.0%
TCAATTGAGCTAAGACCTAT+TGG - chr4_2:41545480-41545499 Msa0600390:CDS 35.0%
CATAGCTAGAGTCAAATTTG+TGG - chr4_2:41545849-41545868 Msa0600390:intron 35.0%
CTAGCTAAAAGTCCATGATT+AGG - chr4_2:41545873-41545892 Msa0600390:intron 35.0%
TTCTGTACAAATCCATGTGA+TGG - chr4_2:41546048-41546067 Msa0600390:intron 35.0%
AAATCATGTTTGCCATCACA+TGG + chr4_2:41546063-41546082 None:intergenic 35.0%
AATTAAGGGATCAAGGACAT+AGG + chr4_2:41546099-41546118 None:intergenic 35.0%
!!! ATGTTTTCACATTTTGAGGC+TGG - chr4_2:41546217-41546236 Msa0600390:intron 35.0%
TACACTGCATCTGTACTTAA+GGG + chr4_2:41546249-41546268 None:intergenic 35.0%
AGAGATGAAAATGACTTGAC+TGG + chr4_2:41546446-41546465 None:intergenic 35.0%
!!! AGAGAGAGTTACTTTTAAGG+GGG + chr4_2:41546657-41546676 None:intergenic 35.0%
!!! GAGAGAGAGTTACTTTTAAG+GGG + chr4_2:41546658-41546677 None:intergenic 35.0%
!!! CTGAGAGAGAGTTACTTTTA+AGG + chr4_2:41546660-41546679 None:intergenic 35.0%
TTGGATGTTCCACCTATATA+CGG - chr4_2:41546906-41546925 Msa0600390:intron 35.0%
TGCACAAGACGAATAAAGAT+CGG + chr4_2:41546957-41546976 None:intergenic 35.0%
!! GAAATTGGAAATGGATTGAC+AGG - chr4_2:41547070-41547089 Msa0600390:intron 35.0%
ATGGTTAACAAACTGCTGTA+TGG + chr4_2:41547104-41547123 None:intergenic 35.0%
ACCATAGTAACAGTTAGATG+TGG - chr4_2:41547119-41547138 Msa0600390:intron 35.0%
TCCACATCTAACTGTTACTA+TGG + chr4_2:41547123-41547142 None:intergenic 35.0%
! TTTGCTATCAGTTAACATGG+TGG - chr4_2:41547154-41547173 Msa0600390:intron 35.0%
ATTTCCTCTAACCTCAAAGA+GGG + chr4_2:41547249-41547268 None:intergenic 35.0%
TTAGGACACTCATTAGCAAA+AGG + chr4_2:41547537-41547556 None:intergenic 35.0%
ACACTATCCCAATACAAAGA+GGG - chr4_2:41547683-41547702 Msa0600390:intron 35.0%
GGTGAAGGTTCAAATATTCA+AGG + chr4_2:41547882-41547901 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG - chr4_2:41548638-41548657 Msa0600390:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG - chr4_2:41548639-41548658 Msa0600390:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG - chr4_2:41548640-41548659 Msa0600390:intron 35.0%
!!! GTTTTTTTTTGTGGTGGTTG+GGG + chr4_2:41548672-41548691 None:intergenic 35.0%
GGAGTATATACACATCCATA+TGG + chr4_2:41548859-41548878 None:intergenic 35.0%
!! CTCCATTTACCACTTTTGTT+AGG - chr4_2:41548875-41548894 Msa0600390:intron 35.0%
CTCCTAACAAAAGTGGTAAA+TGG + chr4_2:41548880-41548899 None:intergenic 35.0%
!! TGAATTATGTGCTGTTTCTG+TGG + chr4_2:41549065-41549084 None:intergenic 35.0%
TGTGTGATTGTTGTCATTCA+GGG + chr4_2:41549303-41549322 None:intergenic 35.0%
ATGTGTGATTGTTGTCATTC+AGG + chr4_2:41549304-41549323 None:intergenic 35.0%
CTTCATCAATTTATTTGGCC+CGG - chr4_2:41549574-41549593 Msa0600390:intron 35.0%
GACAGCAATGAATTAAGGAT+GGG + chr4_2:41549636-41549655 None:intergenic 35.0%
TGACAGCAATGAATTAAGGA+TGG + chr4_2:41549637-41549656 None:intergenic 35.0%
AGGATGACAGCAATGAATTA+AGG + chr4_2:41549641-41549660 None:intergenic 35.0%
CAAGACAAATAAAGGACTCT+GGG - chr4_2:41549887-41549906 Msa0600390:intron 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG - chr4_2:41549897-41549916 Msa0600390:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG + chr4_2:41550208-41550227 None:intergenic 35.0%
TGCAACTAGCAAACAAGATT+GGG + chr4_2:41550323-41550342 None:intergenic 35.0%
!! TCAACACTACTATTTTCGAG+AGG - chr4_2:41550370-41550389 Msa0600390:CDS 35.0%
TCCCTACAAACAAGACAATA+TGG + chr4_2:41550657-41550676 None:intergenic 35.0%
!! ATATTGTCTTGTTTGTAGGG+AGG - chr4_2:41550656-41550675 Msa0600390:intron 35.0%
TTTGTAGGGAGGAAATTCAA+AGG - chr4_2:41550667-41550686 Msa0600390:intron 35.0%
GGAGGAAATTCAAAGGATTA+AGG - chr4_2:41550674-41550693 Msa0600390:intron 35.0%
! AGACACGATTCGACTTTTAA+TGG - chr4_2:41550871-41550890 Msa0600390:intron 35.0%
GTAGGAGAGTAACCAAAAAA+AGG - chr4_2:41550940-41550959 Msa0600390:intron 35.0%
!! GTTGATTTCATGGGCATTTT+AGG - chr4_2:41551005-41551024 Msa0600390:intron 35.0%
CCAAAAAGCTTTCATCTCAA+TGG + chr4_2:41551200-41551219 None:intergenic 35.0%
! CCATTGAGATGAAAGCTTTT+TGG - chr4_2:41551197-41551216 Msa0600390:intron 35.0%
!! GAAAGAATCCAATTTTGGAG+TGG - chr4_2:41551220-41551239 Msa0600390:intron 35.0%
AATCACTTCCACTCCAAAAT+TGG + chr4_2:41551231-41551250 None:intergenic 35.0%
!!! ATTTTGGAGTGGAAGTGATT+TGG - chr4_2:41551231-41551250 Msa0600390:intron 35.0%
!!! TTTTGGAGTGGAAGTGATTT+GGG - chr4_2:41551232-41551251 Msa0600390:intron 35.0%
! TTTGGGGGATAATCCAATTT+TGG - chr4_2:41551266-41551285 Msa0600390:intron 35.0%
! TTGGGGGATAATCCAATTTT+GGG - chr4_2:41551267-41551286 Msa0600390:intron 35.0%
!!! ATAATCCAATTTTGGGGTGA+AGG - chr4_2:41551274-41551293 Msa0600390:intron 35.0%
! GTTGAAAACATCGATTGACA+TGG - chr4_2:41551323-41551342 Msa0600390:intron 35.0%
! AACATCGATTGACATGGTAA+AGG - chr4_2:41551329-41551348 Msa0600390:intron 35.0%
!!! CGTTTTCAACGTGTTTTGAT+TGG + chr4_2:41551375-41551394 None:intergenic 35.0%
AAACACGTTGAAAACGGATA+CGG - chr4_2:41551379-41551398 Msa0600390:intron 35.0%
CAGGAACGCTATAAAATAAG+TGG - chr4_2:41551757-41551776 Msa0600390:intron 35.0%
CATTTCCCTCATATTCACTT+TGG - chr4_2:41551983-41552002 Msa0600390:intron 35.0%
! CCAATCTTTGTTGTAGGATT+AGG + chr4_2:41552138-41552157 None:intergenic 35.0%
CCTAATCCTACAACAAAGAT+TGG - chr4_2:41552135-41552154 Msa0600390:intron 35.0%
CCACCACCAAAAAAAAGAAA+AGG + chr4_2:41552215-41552234 None:intergenic 35.0%
!!! CCTTTTCTTTTTTTTGGTGG+TGG - chr4_2:41552212-41552231 Msa0600390:intron 35.0%
GGAAACATATATGTAAGGTC+CGG + chr4_2:41552252-41552271 None:intergenic 35.0%
AAGCACACTCTCAAACTCAA+AGG - chr4_2:41545144-41545163 Msa0600390:three_prime_UTR 40.0%
ATGCTTTACAGCACTATGGT+TGG + chr4_2:41546184-41546203 None:intergenic 40.0%
CTTGATGCTTTACAGCACTA+TGG + chr4_2:41546188-41546207 None:intergenic 40.0%
GTACACTGCATCTGTACTTA+AGG + chr4_2:41546250-41546269 None:intergenic 40.0%
ACTAGTGGTTAAGACTTTGG+TGG - chr4_2:41546412-41546431 Msa0600390:intron 40.0%
!! CACTTTTTACTGACACTGCA+AGG + chr4_2:41546519-41546538 None:intergenic 40.0%
GCTAGATGAAAATGTGTGTG+TGG + chr4_2:41546612-41546631 None:intergenic 40.0%
! CACACACATTTTCATCTAGC+TGG - chr4_2:41546612-41546631 Msa0600390:intron 40.0%
ATCTAGCTGGACAATTGTAG+TGG - chr4_2:41546625-41546644 Msa0600390:intron 40.0%
!! CAGCCTTTGGTAATGTTGAT+TGG - chr4_2:41546839-41546858 Msa0600390:intron 40.0%
ATTCGTCTTGTGCAGAGATT+TGG - chr4_2:41546963-41546982 Msa0600390:intron 40.0%
! CTTATTTGGTTCCCTCTTTG+AGG - chr4_2:41547235-41547254 Msa0600390:CDS 40.0%
CATTTCCTCTAACCTCAAAG+AGG + chr4_2:41547250-41547269 None:intergenic 40.0%
!! CTCTTTGAGGTTAGAGGAAA+TGG - chr4_2:41547248-41547267 Msa0600390:CDS 40.0%
TGAGGTTAGAGGAAATGGAA+TGG - chr4_2:41547253-41547272 Msa0600390:CDS 40.0%
TCACGACCAACAAATTGATG+TGG - chr4_2:41547392-41547411 Msa0600390:intron 40.0%
AAGTGCATGTATGGTAAGTG+GGG + chr4_2:41547447-41547466 None:intergenic 40.0%
CAAGTGCATGTATGGTAAGT+GGG + chr4_2:41547448-41547467 None:intergenic 40.0%
! TCTATGTTCGCGGAGATTTT+AGG + chr4_2:41547642-41547661 None:intergenic 40.0%
TGTGAACTCATCTATGTTCG+CGG + chr4_2:41547652-41547671 None:intergenic 40.0%
TGTATTGGGATAGTGTCTCT+TGG + chr4_2:41547679-41547698 None:intergenic 40.0%
GACACTATCCCAATACAAAG+AGG - chr4_2:41547682-41547701 Msa0600390:intron 40.0%
! ATCCAGTACCTTTTTGGACA+GGG + chr4_2:41548339-41548358 None:intergenic 40.0%
CATCACTCTCCTAACAAAAG+TGG + chr4_2:41548887-41548906 None:intergenic 40.0%
!! GCTTTTAGGAGTTAGGACTT+AGG - chr4_2:41548977-41548996 Msa0600390:intron 40.0%
CAAAGAGGCAACTACTAACT+AGG - chr4_2:41549274-41549293 Msa0600390:intron 40.0%
TGTGATTGTTGTCATTCAGG+GGG + chr4_2:41549301-41549320 None:intergenic 40.0%
GTGTGATTGTTGTCATTCAG+GGG + chr4_2:41549302-41549321 None:intergenic 40.0%
TAGCTAGCATAGAGTAGCAT+AGG - chr4_2:41549375-41549394 Msa0600390:intron 40.0%
GTTACGTAACGTCACAATCT+TGG + chr4_2:41549605-41549624 None:intergenic 40.0%
TGCATGCATGTGTTCTACTA+GGG + chr4_2:41549667-41549686 None:intergenic 40.0%
ATGCATGCATGTGTTCTACT+AGG + chr4_2:41549668-41549687 None:intergenic 40.0%
CTGGTACTTCAGTTAGTGAT+CGG - chr4_2:41549767-41549786 Msa0600390:intron 40.0%
GCAAGACAAATAAAGGACTC+TGG - chr4_2:41549886-41549905 Msa0600390:intron 40.0%
CTGCAACTAGCAAACAAGAT+TGG + chr4_2:41550324-41550343 None:intergenic 40.0%
! CAATCTTGTTTGCTAGTTGC+AGG - chr4_2:41550322-41550341 Msa0600390:CDS 40.0%
TAATCCAGATATCAGCCACA+GGG - chr4_2:41550701-41550720 Msa0600390:intron 40.0%
CTCTACACACAAAGGTTTGT+CGG - chr4_2:41550979-41550998 Msa0600390:intron 40.0%
!! TTGTCGGCATGTTGATTTCA+TGG - chr4_2:41550995-41551014 Msa0600390:intron 40.0%
!! TGTCGGCATGTTGATTTCAT+GGG - chr4_2:41550996-41551015 Msa0600390:intron 40.0%
! ATTGCCATGGTGATTTTCGA+GGG - chr4_2:41551152-41551171 Msa0600390:intron 40.0%
! TTTGGAGTGGAAGTGATTTG+GGG - chr4_2:41551233-41551252 Msa0600390:intron 40.0%
! TGGGGGATAATCCAATTTTG+GGG - chr4_2:41551268-41551287 Msa0600390:intron 40.0%
TTGGGACAGAAAGCGATTTA+GGG - chr4_2:41551301-41551320 Msa0600390:intron 40.0%
AACACGTTGAAAACGGATAC+GGG - chr4_2:41551380-41551399 Msa0600390:intron 40.0%
!!! GCTTTTTAAGTCCTCCACTA+GGG + chr4_2:41551433-41551452 None:intergenic 40.0%
!!! AGCTTTTTAAGTCCTCCACT+AGG + chr4_2:41551434-41551453 None:intergenic 40.0%
GCTTCCCAAAGTGAATATGA+GGG + chr4_2:41551991-41552010 None:intergenic 40.0%
TGCTTCCCAAAGTGAATATG+AGG + chr4_2:41551992-41552011 None:intergenic 40.0%
AGCAAGCAAAGTTGGATCAT+GGG - chr4_2:41552011-41552030 Msa0600390:intron 40.0%
! CAGTCTCCAATCTTTGTTGT+AGG + chr4_2:41552144-41552163 None:intergenic 40.0%
CTACAACAAAGATTGGAGAC+TGG - chr4_2:41552142-41552161 Msa0600390:intron 40.0%
!!! TTCTTTTTTTTGGTGGTGGC+CGG - chr4_2:41552216-41552235 Msa0600390:CDS 40.0%
! GAGTTTGAGAGTGTGCTTAG+TGG + chr4_2:41545142-41545161 None:intergenic 45.0%
CTTCTGCAACACCATTCTAG+CGG - chr4_2:41545247-41545266 Msa0600390:intron 45.0%
ATAAGCTAGCAGGAGTGAGA+AGG + chr4_2:41546714-41546733 None:intergenic 45.0%
!! AAGCAAAGGGCACCGTATAT+AGG + chr4_2:41546921-41546940 None:intergenic 45.0%
GGAGGAAATGGCTGAAGTAA+TGG + chr4_2:41547182-41547201 None:intergenic 45.0%
AAACATACCTGAGGGAGTTG+AGG + chr4_2:41547206-41547225 None:intergenic 45.0%
GCAAGTGCATGTATGGTAAG+TGG + chr4_2:41547449-41547468 None:intergenic 45.0%
GAAGTCACGGACAATGTCTT+AGG + chr4_2:41547555-41547574 None:intergenic 45.0%
GTCTGCTCCCTCTTTGTATT+GGG + chr4_2:41547693-41547712 None:intergenic 45.0%
TCTATGGTCCCTGTCCAAAA+AGG - chr4_2:41548328-41548347 Msa0600390:CDS 45.0%
! GATCCAGTACCTTTTTGGAC+AGG + chr4_2:41548340-41548359 None:intergenic 45.0%
! GGATCGATCCAGTACCTTTT+TGG + chr4_2:41548345-41548364 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_2:41548611-41548630 Msa0600390:intron 45.0%
TCATGAAGAAGCAAGCAGCA+AGG - chr4_2:41549082-41549101 Msa0600390:intron 45.0%
GAAGCAAGCAGCAAGGAAAT+TGG - chr4_2:41549089-41549108 Msa0600390:intron 45.0%
TAGTAGAGCACGAACATCCT+AGG - chr4_2:41549156-41549175 Msa0600390:intron 45.0%
GTGATTGTTGTCATTCAGGG+GGG + chr4_2:41549300-41549319 None:intergenic 45.0%
GTAACGTCACAATCTTGGAG+GGG + chr4_2:41549600-41549619 None:intergenic 45.0%
CGTAACGTCACAATCTTGGA+GGG + chr4_2:41549601-41549620 None:intergenic 45.0%
ACGTAACGTCACAATCTTGG+AGG + chr4_2:41549602-41549621 None:intergenic 45.0%
CATGTGTTCTACTAGGGCAT+AGG + chr4_2:41549661-41549680 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG - chr4_2:41550229-41550248 Msa0600390:intron 45.0%
ATGAACCGGTTGTAAGCAGA+AGG + chr4_2:41550237-41550256 None:intergenic 45.0%
GTGGCTGATATCTGGATTAC+TGG + chr4_2:41550700-41550719 None:intergenic 45.0%
GTAATCCAGATATCAGCCAC+AGG - chr4_2:41550700-41550719 Msa0600390:intron 45.0%
! TGCAGCGAATGCAATTTGCT+GGG + chr4_2:41550852-41550871 None:intergenic 45.0%
! CATTGCCATGGTGATTTTCG+AGG - chr4_2:41551151-41551170 Msa0600390:intron 45.0%
!! TTGCCATGGTGATTTTCGAG+GGG - chr4_2:41551153-41551172 Msa0600390:intron 45.0%
ATTTGGGGACGAAAGCGATT+TGG - chr4_2:41551248-41551267 Msa0600390:intron 45.0%
TTTGGGGACGAAAGCGATTT+GGG - chr4_2:41551249-41551268 Msa0600390:intron 45.0%
!!! ATCCAATTTTGGGGTGAAGG+TGG - chr4_2:41551277-41551296 Msa0600390:intron 45.0%
CTTGGGACAGAAAGCGATTT+AGG - chr4_2:41551300-41551319 Msa0600390:intron 45.0%
!!! CGTGTTTTGATTGGCTCGTT+CGG + chr4_2:41551366-41551385 None:intergenic 45.0%
CAGCAAGCAAAGTTGGATCA+TGG - chr4_2:41552010-41552029 Msa0600390:intron 45.0%
GCAAGCAAAGTTGGATCATG+GGG - chr4_2:41552012-41552031 Msa0600390:intron 45.0%
CAAAGTTGGATCATGGGGAA+GGG - chr4_2:41552017-41552036 Msa0600390:intron 45.0%
GGGACTCGTGAAAAGACTAA+TGG - chr4_2:41552037-41552056 Msa0600390:intron 45.0%
!!! TCTTTTTTTTGGTGGTGGCC+GGG - chr4_2:41552217-41552236 Msa0600390:CDS 45.0%
!! AAAAATAAAACAAATAAAAA+AGG - chr4_2:41547421-41547440 Msa0600390:intron 5.0%
!! AAAAATAAAAAAATTATAAG+AGG + chr4_2:41547792-41547811 None:intergenic 5.0%
!! TATTAAAAAAACATAAATTA+GGG + chr4_2:41548089-41548108 None:intergenic 5.0%
!! TTTGAATATTAAATTTATAT+TGG + chr4_2:41550159-41550178 None:intergenic 5.0%
!! TTAAATATAAAAAAATCTAA+AGG - chr4_2:41551567-41551586 Msa0600390:intron 5.0%
!!! ATAATTAATATTTTAAACAT+TGG + chr4_2:41552183-41552202 None:intergenic 5.0%
!! CAAAGGGCACCGTATATAGG+TGG + chr4_2:41546918-41546937 None:intergenic 50.0%
!! GGTTCCCTCTTTGAGGTTAG+AGG - chr4_2:41547242-41547261 Msa0600390:CDS 50.0%
GGTCTGCTCCCTCTTTGTAT+TGG + chr4_2:41547694-41547713 None:intergenic 50.0%
! GTCCCTGTCCAAAAAGGTAC+TGG - chr4_2:41548334-41548353 Msa0600390:CDS 50.0%
GAGTGTGACTCACGACGAAT+GGG + chr4_2:41549188-41549207 None:intergenic 50.0%
AGAGTGTGACTCACGACGAA+TGG + chr4_2:41549189-41549208 None:intergenic 50.0%
CTGCAGCGAATGCAATTTGC+TGG + chr4_2:41550853-41550872 None:intergenic 50.0%
!! TGCCATGGTGATTTTCGAGG+GGG - chr4_2:41551154-41551173 Msa0600390:intron 50.0%
TTGGGGACGAAAGCGATTTG+GGG - chr4_2:41551250-41551269 Msa0600390:intron 50.0%
AGCCACCTTCACCCCAAAAT+TGG + chr4_2:41551282-41551301 None:intergenic 50.0%
!!! ATTTTGGGGTGAAGGTGGCT+TGG - chr4_2:41551282-41551301 Msa0600390:intron 50.0%
!!! TTTTGGGGTGAAGGTGGCTT+GGG - chr4_2:41551283-41551302 Msa0600390:intron 50.0%
ACGTTGAAAACGGATACGGG+AGG - chr4_2:41551383-41551402 Msa0600390:intron 50.0%
CACTAGGGTTTGAGGGAGAA+TGG + chr4_2:41551418-41551437 None:intergenic 50.0%
CATTCTCCCTCAAACCCTAG+TGG - chr4_2:41551416-41551435 Msa0600390:intron 50.0%
AGTCCTCCACTAGGGTTTGA+GGG + chr4_2:41551425-41551444 None:intergenic 50.0%
AAGTCCTCCACTAGGGTTTG+AGG + chr4_2:41551426-41551445 None:intergenic 50.0%
TGGGAAGCAGCAAGCAAAGT+TGG - chr4_2:41552003-41552022 Msa0600390:intron 50.0%
GCAAAGTTGGATCATGGGGA+AGG - chr4_2:41552016-41552035 Msa0600390:intron 50.0%
!!! CTTTTTTTTGGTGGTGGCCG+GGG - chr4_2:41552218-41552237 Msa0600390:CDS 50.0%
AAGGTCCGGAGTTTAAACCC+CGG + chr4_2:41552238-41552257 None:intergenic 50.0%
GGGAGTTGAGGAGGAGGAAA+TGG + chr4_2:41547194-41547213 None:intergenic 55.0%
CATACCTGAGGGAGTTGAGG+AGG + chr4_2:41547203-41547222 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr4_2:41548609-41548628 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr4_2:41548606-41548625 Msa0600390:intron 55.0%
CGACGAATGGGAGGAATCCT+AGG + chr4_2:41549176-41549195 None:intergenic 55.0%
TGTGACTCACGACGAATGGG+AGG + chr4_2:41549185-41549204 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG - chr4_2:41550704-41550723 Msa0600390:intron 55.0%
!! GCCATGGTGATTTTCGAGGG+GGG - chr4_2:41551155-41551174 Msa0600390:intron 55.0%
ACCCCCCTCGAAAATCACCA+TGG + chr4_2:41551159-41551178 None:intergenic 55.0%
!!! TGATTTTCGAGGGGGGTGCT+CGG - chr4_2:41551162-41551181 Msa0600390:intron 55.0%
! TGGGGACGAAAGCGATTTGG+GGG - chr4_2:41551251-41551270 Msa0600390:intron 55.0%
TCTCCCTCAAACCCTAGTGG+AGG - chr4_2:41551419-41551438 Msa0600390:intron 55.0%
TCCTCCTCCTCAACTCCCTC+AGG - chr4_2:41547196-41547215 Msa0600390:intron 60.0%
ACCTGAGGGAGTTGAGGAGG+AGG + chr4_2:41547200-41547219 None:intergenic 60.0%
GTCACAATCTTGGAGGGGCC+GGG + chr4_2:41549595-41549614 None:intergenic 60.0%
CGTCACAATCTTGGAGGGGC+CGG + chr4_2:41549596-41549615 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG + chr4_2:41550708-41550727 None:intergenic 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG + chr4_2:41550719-41550738 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG - chr4_2:41550719-41550738 Msa0600390:intron 60.0%
GGTGGCCGGGGTTTAAACTC+CGG - chr4_2:41552230-41552249 Msa0600390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 41545128 41552356 41545128 ID=Msa0600390;Name=Msa0600390
chr4_2 mRNA 41545128 41552356 41545128 ID=Msa0600390-mRNA-1;Parent=Msa0600390;Name=Msa0600390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|1|1|1|0.83|0.71|7|228|180
chr4_2 exon 41545128 41545222 41545128 ID=Msa0600390-mRNA-1:exon:9072;Parent=Msa0600390-mRNA-1
chr4_2 exon 41545282 41545507 41545282 ID=Msa0600390-mRNA-1:exon:9071;Parent=Msa0600390-mRNA-1
chr4_2 exon 41546735 41546810 41546735 ID=Msa0600390-mRNA-1:exon:9070;Parent=Msa0600390-mRNA-1
chr4_2 exon 41547225 41547273 41547225 ID=Msa0600390-mRNA-1:exon:9069;Parent=Msa0600390-mRNA-1
chr4_2 exon 41548290 41548416 41548290 ID=Msa0600390-mRNA-1:exon:9068;Parent=Msa0600390-mRNA-1
chr4_2 exon 41550267 41550392 41550267 ID=Msa0600390-mRNA-1:exon:9067;Parent=Msa0600390-mRNA-1
chr4_2 exon 41552216 41552356 41552216 ID=Msa0600390-mRNA-1:exon:9066;Parent=Msa0600390-mRNA-1
chr4_2 five_prime_UTR 41552288 41552356 41552288 ID=Msa0600390-mRNA-1:five_prime_utr;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41552216 41552287 41552216 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41550267 41550392 41550267 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41548290 41548416 41548290 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41547225 41547273 41547225 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41546735 41546810 41546735 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 CDS 41545415 41545507 41545415 ID=Msa0600390-mRNA-1:cds;Parent=Msa0600390-mRNA-1
chr4_2 three_prime_UTR 41545282 41545414 41545282 ID=Msa0600390-mRNA-1:three_prime_utr;Parent=Msa0600390-mRNA-1
chr4_2 three_prime_UTR 41545128 41545222 41545128 ID=Msa0600390-mRNA-1:three_prime_utr;Parent=Msa0600390-mRNA-1
Gene Sequence

>Msa0600390

ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGGGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>Msa0600390

MSMDMIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQKQHIIHEEASSKEIGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*