AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640880 MtrunA17_Chr4g0025361 97.778 180 1 1 1 180 1 177 1.40e-129 360
Msa0640880 MtrunA17_Chr2g0322221 71.649 194 40 7 1 180 3 195 4.95e-85 248
Msa0640880 MtrunA17_Chr4g0063931 56.069 173 67 4 7 173 12 181 2.93e-55 173
Msa0640880 MtrunA17_Chr4g0011841 56.173 162 57 4 11 160 25 184 3.66e-49 158
Msa0640880 MtrunA17_Chr4g0056521 46.500 200 72 6 8 180 17 208 1.23e-47 154
Msa0640880 MtrunA17_Chr5g0413381 52.288 153 65 3 9 155 12 162 6.16e-47 152
Msa0640880 MtrunA17_Chr5g0419871 45.570 158 73 4 1 154 7 155 1.76e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640880 AT1G08465.1 57.895 190 64 6 1 180 1 184 1.09e-68 207
Msa0640880 AT2G26580.2 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0640880 AT2G26580.1 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0640880 AT2G45190.1 53.061 196 69 6 8 180 22 217 4.32e-55 174
Msa0640880 AT4G00180.1 47.642 212 70 5 7 180 21 229 1.08e-47 155
Msa0640880 AT4G00180.2 45.274 201 69 5 18 180 1 198 2.60e-37 128
Msa0640880 AT1G23420.1 41.818 165 76 3 10 158 20 180 1.37e-36 127
Msa0640880 AT1G23420.2 41.818 165 76 3 10 158 51 211 4.99e-36 126
Msa0640880 AT2G45190.2 60.952 105 30 3 87 180 49 153 7.14e-34 118
Msa0640880 AT1G69180.1 42.000 150 71 2 9 154 19 156 9.11e-32 113

Find 53 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTTTGTTGTAGGATT+AGG 0.226265 4_3:-40325554 None:intergenic
TCCACATCTAACTGTTACTA+TGG 0.283760 4_3:-40320193 None:intergenic
GTGGCTGATATCTGGATTAC+TGG 0.287474 4_3:-40323757 None:intergenic
GCCTCCCTGTGGCTGATATC+TGG 0.289400 4_3:-40323765 None:intergenic
TGTGCTTAGTGGATTTATAA+AGG 0.317520 4_3:-40318230 None:intergenic
CAGTCTCCAATCTTTGTTGT+AGG 0.329985 4_3:-40325560 None:intergenic
CCTAATCCTACAACAAAGAT+TGG 0.330749 4_3:+40325554 Msa0640880:three_prime_UTR
GATTCTACTGATATAATATA+TGG 0.337336 4_3:+40325478 Msa0640880:exon
GAAGCAAGCAGCAAGGAAAT+TGG 0.345303 4_3:+40322188 Msa0640880:CDS
GGAGGAAATTCAAAGGATTA+AGG 0.377485 4_3:+40323734 Msa0640880:CDS
CATTTCCCTCATATTCACTT+TGG 0.399992 4_3:+40325402 Msa0640880:CDS
ATTTCCCTCATATTCACTTT+GGG 0.416154 4_3:+40325403 Msa0640880:CDS
AAATAACTTACTTAATGAAC+CGG 0.422652 4_3:-40323313 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4_3:-40320264 None:intergenic
TGCTTCCCAAAGTGAATATG+AGG 0.444364 4_3:-40325408 None:intergenic
GGGACTCGTGAAAAGACTAA+TGG 0.445379 4_3:+40325456 Msa0640880:CDS
CGACGAATGGGAGGAATCCT+AGG 0.445790 4_3:-40322272 None:intergenic
TTCATAGCAAAAGAAAGAAA+AGG 0.447990 4_3:-40325631 None:intergenic
ATGGTTAACAAACTGCTGTA+TGG 0.448489 4_3:-40320174 None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4_3:+40323294 Msa0640880:CDS
TGGGAAGCAGCAAGCAAAGT+TGG 0.453770 4_3:+40325422 Msa0640880:CDS
GAGTTTGAGAGTGTGCTTAG+TGG 0.460152 4_3:-40318241 None:intergenic
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4_3:+40320269 Msa0640880:CDS
CAACAAAATAGCATCATTTG+AGG 0.493091 4_3:+40322229 Msa0640880:CDS
TAAATCTGTGAAAATTAATG+AGG 0.510309 4_3:+40325527 Msa0640880:three_prime_UTR
TCATAGCAAAAGAAAGAAAA+GGG 0.511649 4_3:-40325630 None:intergenic
AGAGTGTGACTCACGACGAA+TGG 0.516345 4_3:-40322285 None:intergenic
TAGTAGAGCACGAACATCCT+AGG 0.516780 4_3:+40322255 Msa0640880:CDS
AGAATACTATACCGCTAGAA+TGG 0.519749 4_3:-40318360 None:intergenic
GAGTGTGACTCACGACGAAT+GGG 0.531160 4_3:-40322284 None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4_3:-40320270 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4_3:-40320252 None:intergenic
CAGCAAGCAAAGTTGGATCA+TGG 0.562735 4_3:+40325429 Msa0640880:CDS
GCAAAGTTGGATCATGGTGA+AGG 0.573037 4_3:+40325435 Msa0640880:CDS
AAACATACCTGAGGGAGTTG+AGG 0.577695 4_3:-40320276 None:intergenic
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4_3:-40323299 None:intergenic
GTAATCCAGATATCAGCCAC+AGG 0.588300 4_3:+40323760 Msa0640880:CDS
TAATTTGCTATCAGTTAACA+TGG 0.590629 4_3:+40320224 Msa0640880:CDS
CTACAACAAAGATTGGAGAC+TGG 0.605903 4_3:+40325561 Msa0640880:three_prime_UTR
CAAAGTTGGATCATGGTGAA+GGG 0.606710 4_3:+40325436 Msa0640880:CDS
TTTGCAGGGAGGAAATTCAA+AGG 0.611419 4_3:+40323727 Msa0640880:intron
CTGAGCTGAAAGCCTCCCTG+TGG 0.623676 4_3:-40323776 None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG 0.634037 4_3:+40323779 Msa0640880:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.635233 4_3:-40320273 None:intergenic
AAGCACACTCTCAAACTCAA+AGG 0.636057 4_3:+40318246 Msa0640880:five_prime_UTR
ACCATAGTAACAGTTAGATG+TGG 0.643235 4_3:+40320192 Msa0640880:CDS
TGTGACTCACGACGAATGGG+AGG 0.645995 4_3:-40322281 None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG 0.659976 4_3:+40322181 Msa0640880:CDS
GCTTCCCAAAGTGAATATGA+GGG 0.661736 4_3:-40325407 None:intergenic
TCCAGATATCAGCCACAGGG+AGG 0.683704 4_3:+40323764 Msa0640880:CDS
TAATCCAGATATCAGCCACA+GGG 0.696359 4_3:+40323761 Msa0640880:CDS
CTTCTGCAACACCATTCTAG+CGG 0.715968 4_3:+40318349 Msa0640880:CDS
TTTGCTATCAGTTAACATGG+TGG 0.723467 4_3:+40320227 Msa0640880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTTTTTTTTTT+AGG + chr4_3:40320868-40320887 Msa0640880:intron 0.0%
!!! TTTTATATATAAAAAAAAAA+AGG - chr4_3:40321439-40321458 None:intergenic 0.0%
!! AAAAAATAAATAATAATAAA+TGG - chr4_3:40325680-40325699 None:intergenic 0.0%
!!! TTTATTATTATTTATTTTTT+AGG + chr4_3:40325680-40325699 Msa0640880:three_prime_UTR 0.0%
!!! TTATTATTATTTATTTTTTA+GGG + chr4_3:40325681-40325700 Msa0640880:three_prime_UTR 0.0%
!! TCAAAAAAATTCAAAATATA+TGG + chr4_3:40319051-40319070 Msa0640880:intron 10.0%
!!! GTTTTTTTTTTTTTTTTGAA+CGG - chr4_3:40320072-40320091 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTAGGA+TGG + chr4_3:40320872-40320891 Msa0640880:intron 10.0%
!!! TTTTTTTTTTTTTTTAGGAT+GGG + chr4_3:40320873-40320892 Msa0640880:intron 10.0%
!! CTATTAAAAAAACATAAATT+AGG - chr4_3:40321163-40321182 None:intergenic 10.0%
!!! TTAATAGTAAAAATGATTTT+TGG + chr4_3:40321176-40321195 Msa0640880:intron 10.0%
!!! CAAAATTTTTTATAAAAAAC+TGG - chr4_3:40321813-40321832 None:intergenic 10.0%
!!! TAATTTTTGTATTAACTTTT+TGG + chr4_3:40322307-40322326 Msa0640880:intron 10.0%
!!! AATTTGTTACTTAAAAATAA+TGG - chr4_3:40322599-40322618 None:intergenic 10.0%
!!! TGTTTTGTATATATTTATAT+AGG + chr4_3:40322625-40322644 Msa0640880:intron 10.0%
!! AAATAAATAAATAGAAACAT+TGG - chr4_3:40323612-40323631 None:intergenic 10.0%
!! TGATATTATATTAAAAATAG+TGG + chr4_3:40323999-40324018 Msa0640880:intron 10.0%
!!! TTTTTTTTTTTGACAAATAA+AGG + chr4_3:40324131-40324150 Msa0640880:intron 10.0%
!! TTGTTGAAAAAACAATTAAT+GGG - chr4_3:40318419-40318438 None:intergenic 15.0%
!! TGAGATCAAATAATATATAA+AGG + chr4_3:40318519-40318538 Msa0640880:intron 15.0%
!! TTTCTCATAAAATATAAGTT+AGG - chr4_3:40318718-40318737 None:intergenic 15.0%
!! AAAGAAACAAAATGTATATA+TGG - chr4_3:40319822-40319841 None:intergenic 15.0%
!! TTAGTGAAATTAATTGTAAA+TGG + chr4_3:40320096-40320115 Msa0640880:intron 15.0%
!!! TTATATATGTGTTTTGAAAT+TGG + chr4_3:40320128-40320147 Msa0640880:intron 15.0%
!! AAATTAGTAAGTACATAATT+TGG - chr4_3:40320650-40320669 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTAGGATG+GGG + chr4_3:40320874-40320893 Msa0640880:intron 15.0%
!! ATTTATTAACAGATTTAGAA+AGG + chr4_3:40321105-40321124 Msa0640880:intron 15.0%
!!! ATTTTTGGTAAAAACAAAAA+GGG + chr4_3:40321191-40321210 Msa0640880:intron 15.0%
!!! TATACTGAAGTTTTATTTTT+TGG + chr4_3:40321320-40321339 Msa0640880:intron 15.0%
!! ATTTATATACACAAATTCTA+TGG + chr4_3:40321385-40321404 Msa0640880:intron 15.0%
!!! GTAAAAATAGTTTTTTTTTG+TGG - chr4_3:40321783-40321802 None:intergenic 15.0%
!!! TTTTATTTAATTGTGTCATT+TGG - chr4_3:40321900-40321919 None:intergenic 15.0%
!! AATTAGCAATAGATTAATTA+AGG - chr4_3:40322136-40322155 None:intergenic 15.0%
!!! TTTTTCTTCATCAATTTATT+TGG + chr4_3:40322666-40322685 Msa0640880:intron 15.0%
!!! TGTTATTTGCTTTAATTAAA+CGG - chr4_3:40323688-40323707 None:intergenic 15.0%
!! GTAAATATCGTAAAAAAAAA+AGG + chr4_3:40323976-40323995 Msa0640880:intron 15.0%
!!! TTTAAGTCTTTTTGTTTTTA+CGG + chr4_3:40324178-40324197 Msa0640880:intron 15.0%
!! ATGACTAAAAAAAAATCTAA+AGG + chr4_3:40325162-40325181 Msa0640880:intron 15.0%
!!! TTATTTTTCTGTTAATTAGT+GGG - chr4_3:40325241-40325260 None:intergenic 15.0%
!! TCAACTAAAACTATAATATA+TGG - chr4_3:40325322-40325341 None:intergenic 15.0%
!! CTTGTTGAAAAAACAATTAA+TGG - chr4_3:40318420-40318439 None:intergenic 20.0%
!! TATTGAAAAATCAACCTTAT+AGG + chr4_3:40318623-40318642 Msa0640880:intron 20.0%
!! AAGTAATTCTATGATCTAAA+AGG + chr4_3:40318883-40318902 Msa0640880:intron 20.0%
!! TAATATCAGAATCAGATATT+AGG + chr4_3:40319004-40319023 Msa0640880:intron 20.0%
!! AATATCAGAATCAGATATTA+GGG + chr4_3:40319005-40319024 Msa0640880:intron 20.0%
!! GAAAAACAAAACAAAAACAA+AGG - chr4_3:40319033-40319052 None:intergenic 20.0%
!! AAAAAGACAAGAAAAAAATC+TGG - chr4_3:40319130-40319149 None:intergenic 20.0%
!! AATTGTTGTAGAAATAAAGA+GGG - chr4_3:40319337-40319356 None:intergenic 20.0%
!! AAATTGTTGTAGAAATAAAG+AGG - chr4_3:40319338-40319357 None:intergenic 20.0%
!! AGATGATAAAAGATAGAAAT+TGG - chr4_3:40319560-40319579 None:intergenic 20.0%
!! AAACAAAATGTATATATGGT+TGG - chr4_3:40319818-40319837 None:intergenic 20.0%
!! TTACTAATGCTGAAAATAAA+TGG - chr4_3:40319852-40319871 None:intergenic 20.0%
!! TACAATTAATTTCACTAACT+AGG - chr4_3:40320094-40320113 None:intergenic 20.0%
!! TGTTTCATATTCATCTTATT+TGG + chr4_3:40320294-40320313 Msa0640880:intron 20.0%
!! GTGTATTTAATACATTGAAA+AGG - chr4_3:40320689-40320708 None:intergenic 20.0%
!! GTATATAGTTGAACTTATTA+AGG + chr4_3:40320834-40320853 Msa0640880:intron 20.0%
!! TGACATTGTTATAATCTTAA+AGG - chr4_3:40320975-40320994 None:intergenic 20.0%
!! TAGAATACATAAATTAGCTA+TGG + chr4_3:40321045-40321064 Msa0640880:intron 20.0%
!!! GATTTTTGGTAAAAACAAAA+AGG + chr4_3:40321190-40321209 Msa0640880:intron 20.0%
!!! AACTTCAGTATAATTTTTGA+AGG - chr4_3:40321312-40321331 None:intergenic 20.0%
!! TTTGTGTATATAAATTAGAG+TGG - chr4_3:40321380-40321399 None:intergenic 20.0%
!!! GAGTAAAAACTTTTTTTAGA+AGG + chr4_3:40321467-40321486 Msa0640880:intron 20.0%
!! AATGACATAAAAGAGATATT+TGG - chr4_3:40321519-40321538 None:intergenic 20.0%
!!! ACACTCAAATACTATTTTTA+CGG + chr4_3:40321656-40321675 Msa0640880:intron 20.0%
!!! AAAATAGTTTTTTTTTGTGG+TGG - chr4_3:40321780-40321799 None:intergenic 20.0%
!! CTAAATTTGAATAAACAAAG+AGG + chr4_3:40322358-40322377 Msa0640880:intron 20.0%
!! AGAAAAAAAATTCCCAAATT+GGG - chr4_3:40322653-40322672 None:intergenic 20.0%
!! AAGAAAAAAAATTCCCAAAT+TGG - chr4_3:40322654-40322673 None:intergenic 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG + chr4_3:40322807-40322826 Msa0640880:intron 20.0%
!! TGGTAATTAATTATTGACAT+TGG + chr4_3:40322827-40322846 Msa0640880:intron 20.0%
!! AAATAACTTACTTAATGAAC+CGG - chr4_3:40323316-40323335 None:intergenic 20.0%
!!! TTTGCTTTTTATTTGAAGAA+AGG + chr4_3:40323485-40323504 Msa0640880:intron 20.0%
!!! TTGCTTTTTATTTGAAGAAA+GGG + chr4_3:40323486-40323505 Msa0640880:intron 20.0%
!!! GCTTATATGTATTTTTTGTA+GGG - chr4_3:40323524-40323543 None:intergenic 20.0%
!!! TGCTTATATGTATTTTTTGT+AGG - chr4_3:40323525-40323544 None:intergenic 20.0%
!!! ATAGAAACATTGGTAAATTT+TGG - chr4_3:40323602-40323621 None:intergenic 20.0%
!!! ATTTTAGAGTACTTTTCTTT+AGG + chr4_3:40323650-40323669 Msa0640880:intron 20.0%
!!! TATTAGGTCTTTTTTTATAC+GGG - chr4_3:40323877-40323896 None:intergenic 20.0%
!!! CTATTAGGTCTTTTTTTATA+CGG - chr4_3:40323878-40323897 None:intergenic 20.0%
!!! AGTCTACTTTTAAATTAGTT+TGG - chr4_3:40323942-40323961 None:intergenic 20.0%
!! CATTACATCAAATTATTATG+CGG + chr4_3:40324213-40324232 Msa0640880:intron 20.0%
!!! AAATTATTTTGTTGGAAGTT+AGG - chr4_3:40324345-40324364 None:intergenic 20.0%
!! AAAATAATTTCTTCCTCTAT+CGG + chr4_3:40324355-40324374 Msa0640880:intron 20.0%
!!! TTTGGTAAAGAATCTAATTT+TGG + chr4_3:40324837-40324856 Msa0640880:intron 20.0%
!!! TTGGTAAAGAATCTAATTTT+GGG + chr4_3:40324838-40324857 Msa0640880:intron 20.0%
!!! TTAAAAAGCTTTTGATAACA+TGG + chr4_3:40325032-40325051 Msa0640880:intron 20.0%
!! TGCAATATTAATGTTCAAAT+GGG + chr4_3:40325127-40325146 Msa0640880:intron 20.0%
!! ACTAAAAAAAAATCTAAAGG+TGG + chr4_3:40325165-40325184 Msa0640880:intron 20.0%
!!! TGATTTTTAGTAGAATACAA+TGG + chr4_3:40325194-40325213 Msa0640880:intron 20.0%
!!! TTAATTAGTGGGTAATATAT+GGG - chr4_3:40325230-40325249 None:intergenic 20.0%
!!! CTTATTTTTCTGTTAATTAG+TGG - chr4_3:40325242-40325261 None:intergenic 20.0%
!! AAACTATAATATATGGCATA+TGG - chr4_3:40325315-40325334 None:intergenic 20.0%
!! ATATGTTTATATATATGCAG+TGG + chr4_3:40325376-40325395 Msa0640880:intron 20.0%
!! TATGTTTATATATATGCAGT+GGG + chr4_3:40325377-40325396 Msa0640880:intron 20.0%
!! GATTCTACTGATATAATATA+TGG + chr4_3:40325478-40325497 Msa0640880:exon 20.0%
!!! TCATTAATTTTCACAGATTT+AGG - chr4_3:40325528-40325547 None:intergenic 20.0%
!! TAAATCTGTGAAAATTAATG+AGG + chr4_3:40325527-40325546 Msa0640880:three_prime_UTR 20.0%
! GAGAAAAAGAAAAATGTCAA+TGG + chr4_3:40318286-40318305 Msa0640880:exon 25.0%
! TATTTCATCACCATCTAATT+TGG + chr4_3:40318457-40318476 Msa0640880:intron 25.0%
! ATACAAGCATTATAACCAAT+AGG - chr4_3:40318606-40318625 None:intergenic 25.0%
! TTAATTCCAATGTTCCTATA+AGG - chr4_3:40318640-40318659 None:intergenic 25.0%
!! GATTTTCAATGAACAAAGTT+AGG + chr4_3:40318834-40318853 Msa0640880:intron 25.0%
! TTTGCTTGATCTCTTAAATT+AGG - chr4_3:40318865-40318884 None:intergenic 25.0%
!! GTAAATGTTTTCACATTTTG+AGG + chr4_3:40319278-40319297 Msa0640880:intron 25.0%
! TTAATCTACTTTCTCAAAAG+AGG - chr4_3:40319421-40319440 None:intergenic 25.0%
! TTGAGAAAGTAGATTAAATC+TGG + chr4_3:40319424-40319443 Msa0640880:intron 25.0%
! GCTGAAATATCTTAAAACTT+AGG - chr4_3:40319890-40319909 None:intergenic 25.0%
!!! TTTTAAGATATTTCAGCCTT+TGG + chr4_3:40319893-40319912 Msa0640880:intron 25.0%
!! TGTTTGAAGAATGTATGTTT+TGG + chr4_3:40319935-40319954 Msa0640880:intron 25.0%
! CATAAAAACAACAAAGCAAA+GGG - chr4_3:40320001-40320020 None:intergenic 25.0%
!!! ATGTGTTTTGAAATTGGAAA+TGG + chr4_3:40320134-40320153 Msa0640880:intron 25.0%
!!! TAATTTGCTATCAGTTAACA+TGG + chr4_3:40320224-40320243 Msa0640880:CDS 25.0%
! TAAGTTCAACTATATACACT+AGG - chr4_3:40320831-40320850 None:intergenic 25.0%
! TGTTATAATCTTAAAGGTGA+AGG - chr4_3:40320969-40320988 None:intergenic 25.0%
! AGCTAATTTATGTATTCTAG+TGG - chr4_3:40321044-40321063 None:intergenic 25.0%
!! CTTTCTCATTTTCTCATTAT+AGG + chr4_3:40321082-40321101 Msa0640880:intron 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG + chr4_3:40321223-40321242 Msa0640880:intron 25.0%
!!! TTTTTTTAGAAGGAAAACGA+AGG + chr4_3:40321477-40321496 Msa0640880:intron 25.0%
!!! TTTTTTGACATTGAACCATA+TGG + chr4_3:40321943-40321962 Msa0640880:intron 25.0%
!! GATAGTGAAATAATGCTTTT+AGG + chr4_3:40322062-40322081 Msa0640880:intron 25.0%
!!! AAATAATGCTTTTAGGAGTT+AGG + chr4_3:40322069-40322088 Msa0640880:intron 25.0%
! TGATGCTTAATTTATTGAGT+CGG + chr4_3:40322570-40322589 Msa0640880:intron 25.0%
! ATTTATATAGGTTCCCAATT+TGG + chr4_3:40322637-40322656 Msa0640880:intron 25.0%
! TTTATATAGGTTCCCAATTT+GGG + chr4_3:40322638-40322657 Msa0640880:intron 25.0%
! TGGTAATTGTAAACTATTAC+TGG + chr4_3:40322847-40322866 Msa0640880:intron 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG - chr4_3:40322957-40322976 None:intergenic 25.0%
! CTTGAAGAAATGGTTAATTT+AGG - chr4_3:40322966-40322985 None:intergenic 25.0%
! TTTGACAAACTAGTAGATTA+AGG - chr4_3:40323089-40323108 None:intergenic 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG + chr4_3:40323094-40323113 Msa0640880:intron 25.0%
! CGTATAAAAAAAGACCTAAT+AGG + chr4_3:40323876-40323895 Msa0640880:intron 25.0%
!!! GTGGAATATTTTTTCCTATT+AGG - chr4_3:40323893-40323912 None:intergenic 25.0%
!!! GTTTTGAGTTTGAAGATTAA+AGG + chr4_3:40324098-40324117 Msa0640880:intron 25.0%
! CGCATAATAATTTGATGTAA+TGG - chr4_3:40324215-40324234 None:intergenic 25.0%
! TATAGAATGAATACAAAGCT+TGG + chr4_3:40324296-40324315 Msa0640880:intron 25.0%
!!! AGAGGAAGAAATTATTTTGT+TGG - chr4_3:40324353-40324372 None:intergenic 25.0%
! AAATAATTTCTTCCTCTATC+GGG + chr4_3:40324356-40324375 Msa0640880:intron 25.0%
!!! GAATATAAGTTTTAAGACTG+AGG - chr4_3:40324407-40324426 None:intergenic 25.0%
!! TTTTGATCAAAGGTTTAAGA+TGG - chr4_3:40324490-40324509 None:intergenic 25.0%
!! ATCAAATGGTTTTTGATCAA+AGG - chr4_3:40324500-40324519 None:intergenic 25.0%
! AAACCATTTGATCATATTGT+AGG + chr4_3:40324508-40324527 Msa0640880:intron 25.0%
!!! TGTTTTTTCTCATTTCATGA+AGG - chr4_3:40324633-40324652 None:intergenic 25.0%
! TTGAGATATATTGCATCTAA+TGG - chr4_3:40324656-40324675 None:intergenic 25.0%
!! TGGTAAAGAATCTAATTTTG+GGG + chr4_3:40324839-40324858 Msa0640880:intron 25.0%
!!! CGTATTCATTGTGTTTTTAT+CGG - chr4_3:40324937-40324956 None:intergenic 25.0%
! AAACACAATGAATACGAATA+CGG + chr4_3:40324941-40324960 Msa0640880:intron 25.0%
! ATCGTCTATAATTTAACTCT+TGG + chr4_3:40325057-40325076 Msa0640880:intron 25.0%
! CTATAATTTAACTCTTGGTA+AGG + chr4_3:40325062-40325081 Msa0640880:intron 25.0%
! GTGCAATATTAATGTTCAAA+TGG + chr4_3:40325126-40325145 Msa0640880:intron 25.0%
!! TAATTAGTGGGTAATATATG+GGG - chr4_3:40325229-40325248 None:intergenic 25.0%
!! GTTAATTAGTGGGTAATATA+TGG - chr4_3:40325231-40325250 None:intergenic 25.0%
! TATGGTTGAGCAAATTAAAA+CGG - chr4_3:40325297-40325316 None:intergenic 25.0%
! TCATAGCAAAAGAAAGAAAA+GGG - chr4_3:40325633-40325652 None:intergenic 25.0%
! TTCATAGCAAAAGAAAGAAA+AGG - chr4_3:40325634-40325653 None:intergenic 25.0%
!! TGTGCTTAGTGGATTTATAA+AGG - chr4_3:40318233-40318252 None:intergenic 30.0%
AGAAAACACAAAAGAAGAGA+TGG - chr4_3:40318392-40318411 None:intergenic 30.0%
ACTCAATTTGCCAAATTAGA+TGG - chr4_3:40318470-40318489 None:intergenic 30.0%
AATCAACCTTATAGGAACAT+TGG + chr4_3:40318631-40318650 Msa0640880:intron 30.0%
GAAAATTCACTTCAACATGA+TGG - chr4_3:40318668-40318687 None:intergenic 30.0%
CATATATAAACTTCTTGCCA+TGG - chr4_3:40318773-40318792 None:intergenic 30.0%
TGGCAAGAAGTTTATATATG+TGG + chr4_3:40318773-40318792 Msa0640880:intron 30.0%
CATAGCTAGAGTCAAATTTA+TGG + chr4_3:40318955-40318974 Msa0640880:intron 30.0%
TAGCTAAAAGTCCATGATTA+GGG + chr4_3:40318980-40318999 Msa0640880:intron 30.0%
TCTGATATTAACCCTAATCA+TGG - chr4_3:40318994-40319013 None:intergenic 30.0%
!! AATTTGCTATGCTATGAGAA+AGG - chr4_3:40319390-40319409 None:intergenic 30.0%
GAGTGAGTAATAATAACTAG+TGG + chr4_3:40319463-40319482 Msa0640880:intron 30.0%
ATAACTAGTGGTTAAGACTT+TGG + chr4_3:40319475-40319494 Msa0640880:intron 30.0%
AAGATGATAAATAAGCTAGC+AGG - chr4_3:40319791-40319810 None:intergenic 30.0%
AAAATGTATATATGGTTGGC+AGG - chr4_3:40319814-40319833 None:intergenic 30.0%
AAACCAATCAACATTACCAA+AGG - chr4_3:40319912-40319931 None:intergenic 30.0%
! TTGGTGTATGAATTTTCTCT+TGG + chr4_3:40319954-40319973 Msa0640880:intron 30.0%
GCATAAAAACAACAAAGCAA+AGG - chr4_3:40320002-40320021 None:intergenic 30.0%
TGAATATGAAACATACCTGA+GGG - chr4_3:40320287-40320306 None:intergenic 30.0%
ATGAATATGAAACATACCTG+AGG - chr4_3:40320288-40320307 None:intergenic 30.0%
TTGATACCACATCAATTTGT+TGG - chr4_3:40320474-40320493 None:intergenic 30.0%
TATTATAGCAAGTGCATGTA+TGG - chr4_3:40320529-40320548 None:intergenic 30.0%
!! ACATGCACTTGCTATAATAA+AGG + chr4_3:40320530-40320549 Msa0640880:intron 30.0%
ATCTTCAAGAATTATCACGA+AGG - chr4_3:40320563-40320582 None:intergenic 30.0%
AGTACATAATTTGGAAGTCA+CGG - chr4_3:40320641-40320660 None:intergenic 30.0%
TTTGTCATGTTCATGTAACA+TGG - chr4_3:40320788-40320807 None:intergenic 30.0%
!!! TTTTTTTTTTAGGATGGGGA+AGG + chr4_3:40320878-40320897 Msa0640880:intron 30.0%
!!! TTTTTTTTTAGGATGGGGAA+GGG + chr4_3:40320879-40320898 Msa0640880:intron 30.0%
TTGGACTTTAATTCAATGAG+AGG - chr4_3:40321017-40321036 None:intergenic 30.0%
TTAGGGAGAGAAATTTAGAA+CGG - chr4_3:40321145-40321164 None:intergenic 30.0%
!! AACCAATGGTTTGTTTCTTT+AGG + chr4_3:40321237-40321256 Msa0640880:intron 30.0%
TACCTAAAGAAACAAACCAT+TGG - chr4_3:40321242-40321261 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr4_3:40321707-40321726 Msa0640880:intron 30.0%
CAATGTCAAAAAAGCTTCTA+AGG - chr4_3:40321936-40321955 None:intergenic 30.0%
CAACAAAATAGCATCATTTG+AGG + chr4_3:40322229-40322248 Msa0640880:CDS 30.0%
ATTTGTCTTGCTTGAAGAAA+TGG - chr4_3:40322976-40322995 None:intergenic 30.0%
TCTTCAAGCAAGACAAATAA+AGG + chr4_3:40322978-40322997 Msa0640880:intron 30.0%
GCATATTTCATACTTTCATG+AGG + chr4_3:40324074-40324093 Msa0640880:intron 30.0%
! TTTTAATATTGTGCCTTCTC+AGG - chr4_3:40324258-40324277 None:intergenic 30.0%
GGAAGTTAGGATACAAAATT+TGG - chr4_3:40324332-40324351 None:intergenic 30.0%
AATTACATTCAATGCAGACA+CGG + chr4_3:40324437-40324456 Msa0640880:intron 30.0%
!! AGACACGGTTTGATTTTTAA+TGG + chr4_3:40324452-40324471 Msa0640880:intron 30.0%
TCTCCTACAATATGATCAAA+TGG - chr4_3:40324514-40324533 None:intergenic 30.0%
!!! ATTGTGGTTGAATCCTTTTT+TGG - chr4_3:40324541-40324560 None:intergenic 30.0%
! TTGATTTCATAGGCATTTTC+AGG + chr4_3:40324591-40324610 Msa0640880:intron 30.0%
ATGCAATATATCTCAAAACG+AGG + chr4_3:40324660-40324679 Msa0640880:intron 30.0%
ATTAAAACACAACATTGCCA+TGG + chr4_3:40324695-40324714 Msa0640880:intron 30.0%
!!! TCTTTGGAATGAAAGCTTTT+TGG + chr4_3:40324819-40324838 Msa0640880:intron 30.0%
!! AGAATCTAATTTTGGGGATT+AGG + chr4_3:40324845-40324864 Msa0640880:intron 30.0%
!! GAATCTAATTTTGGGGATTA+GGG + chr4_3:40324846-40324865 Msa0640880:intron 30.0%
AACACAATGAATACGAATAC+GGG + chr4_3:40324942-40324961 Msa0640880:intron 30.0%
GTATTCTACTAAAAATCACG+AGG - chr4_3:40325192-40325211 None:intergenic 30.0%
! AATTAGTGGGTAATATATGG+GGG - chr4_3:40325228-40325247 None:intergenic 30.0%
ATTTCCCTCATATTCACTTT+GGG + chr4_3:40325403-40325422 Msa0640880:CDS 30.0%
GGTCAAACATAGAAAAACAA+AGG - chr4_3:40325507-40325526 None:intergenic 30.0%
AGAATACTATACCGCTAGAA+TGG - chr4_3:40318363-40318382 None:intergenic 35.0%
TCAATTGAGCTAAGACCTAT+TGG + chr4_3:40318588-40318607 Msa0640880:intron 35.0%
GATCTTCATAAACTCTACCA+TGG + chr4_3:40318753-40318772 Msa0640880:intron 35.0%
CTAGCTAAAAGTCCATGATT+AGG + chr4_3:40318979-40318998 Msa0640880:intron 35.0%
TTCTGTACAAATCCATGTGA+TGG + chr4_3:40319149-40319168 Msa0640880:intron 35.0%
TGATGAATTGCACCAAATCA+AGG - chr4_3:40319205-40319224 None:intergenic 35.0%
!!! ATGTTTTCACATTTTGAGGC+TGG + chr4_3:40319282-40319301 Msa0640880:intron 35.0%
TACACTGCATCTGTACTTAA+GGG - chr4_3:40319314-40319333 None:intergenic 35.0%
AGAGATGAAAATGACTTGAC+TGG - chr4_3:40319512-40319531 None:intergenic 35.0%
!! AGAGAGAGTCTACTTTTAAG+GGG - chr4_3:40319724-40319743 None:intergenic 35.0%
!! GAGAGAGAGTCTACTTTTAA+GGG - chr4_3:40319725-40319744 None:intergenic 35.0%
!! TGAGAGAGAGTCTACTTTTA+AGG - chr4_3:40319726-40319745 None:intergenic 35.0%
TTGGATGTTCCACCTATATA+CGG + chr4_3:40319973-40319992 Msa0640880:intron 35.0%
TGCACAAGACGAATAAAGAT+CGG - chr4_3:40320024-40320043 None:intergenic 35.0%
!! GAAATTGGAAATGGATTGAC+AGG + chr4_3:40320143-40320162 Msa0640880:intron 35.0%
ATGGTTAACAAACTGCTGTA+TGG - chr4_3:40320177-40320196 None:intergenic 35.0%
ACCATAGTAACAGTTAGATG+TGG + chr4_3:40320192-40320211 Msa0640880:CDS 35.0%
TCCACATCTAACTGTTACTA+TGG - chr4_3:40320196-40320215 None:intergenic 35.0%
! TTTGCTATCAGTTAACATGG+TGG + chr4_3:40320227-40320246 Msa0640880:CDS 35.0%
ATTTCCTCTAACCTCAAAGA+GGG - chr4_3:40320322-40320341 None:intergenic 35.0%
TTAGGACACTCATTAGGAAA+AGG - chr4_3:40320610-40320629 None:intergenic 35.0%
AATGTCTTAGGACACTCATT+AGG - chr4_3:40320616-40320635 None:intergenic 35.0%
ACACTATCCCAATACAAAGA+GGG + chr4_3:40320756-40320775 Msa0640880:intron 35.0%
GGTGAAGGTTCAAATATTCA+AGG - chr4_3:40320954-40320973 None:intergenic 35.0%
TATGTATTCTAGTGGTGTGT+TGG - chr4_3:40321036-40321055 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr4_3:40321712-40321731 Msa0640880:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr4_3:40321713-40321732 Msa0640880:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG + chr4_3:40321714-40321733 Msa0640880:intron 35.0%
!!! AGTTTTTTTTTGTGGTGGCT+GGG - chr4_3:40321775-40321794 None:intergenic 35.0%
!!! TAGTTTTTTTTTGTGGTGGC+TGG - chr4_3:40321776-40321795 None:intergenic 35.0%
GGAGTATATACACATCCATA+TGG - chr4_3:40321961-40321980 None:intergenic 35.0%
!! CTCCATTTACCACTTTTGTT+AGG + chr4_3:40321977-40321996 Msa0640880:intron 35.0%
CTCCTAACAAAAGTGGTAAA+TGG - chr4_3:40321982-40322001 None:intergenic 35.0%
!! TGAATTATGTGCTGTTTCTG+TGG - chr4_3:40322164-40322183 None:intergenic 35.0%
TGTGTGATTGTTGTCATTCA+GGG - chr4_3:40322402-40322421 None:intergenic 35.0%
ATGTGTGATTGTTGTCATTC+AGG - chr4_3:40322403-40322422 None:intergenic 35.0%
TAGCTAGAATAGAGTAGCAT+AGG + chr4_3:40322472-40322491 Msa0640880:intron 35.0%
CTTCATCAATTTATTTGGCC+CGG + chr4_3:40322671-40322690 Msa0640880:intron 35.0%
GACAGCAATGAATTAAGGAT+GGG - chr4_3:40322733-40322752 None:intergenic 35.0%
TGACAGCAATGAATTAAGGA+TGG - chr4_3:40322734-40322753 None:intergenic 35.0%
AGGATGACAGCAATGAATTA+AGG - chr4_3:40322738-40322757 None:intergenic 35.0%
CAAGACAAATAAAGGACTCT+GGG + chr4_3:40322986-40323005 Msa0640880:intron 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG + chr4_3:40322996-40323015 Msa0640880:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG - chr4_3:40323273-40323292 None:intergenic 35.0%
TGCAACTAGCAAACAAGATT+GGG - chr4_3:40323388-40323407 None:intergenic 35.0%
!! TCAACACTACTATTTTCGAG+TGG + chr4_3:40323435-40323454 Msa0640880:intron 35.0%
GGAGGAAATTCAAAGGATTA+AGG + chr4_3:40323734-40323753 Msa0640880:CDS 35.0%
! CTCTTCTATCACTGTCTTTT+GGG - chr4_3:40323915-40323934 None:intergenic 35.0%
! ACTCTTCTATCACTGTCTTT+TGG - chr4_3:40323916-40323935 None:intergenic 35.0%
! AAGAGTTCAAGTTAAAGGTG+TGG - chr4_3:40324029-40324048 None:intergenic 35.0%
! TCGCAAAGAGTTCAAGTTAA+AGG - chr4_3:40324034-40324053 None:intergenic 35.0%
TCTTTGCGAGAGACATATTA+AGG + chr4_3:40324045-40324064 Msa0640880:intron 35.0%
TCAAATTATTATGCGGTGCT+AGG + chr4_3:40324220-40324239 Msa0640880:intron 35.0%
! CAAATTATTATGCGGTGCTA+GGG + chr4_3:40324221-40324240 Msa0640880:intron 35.0%
AGAATGAATACAAAGCTTGG+AGG + chr4_3:40324299-40324318 Msa0640880:intron 35.0%
ATTGTGTGCAGAGAATATTG+TGG - chr4_3:40324557-40324576 None:intergenic 35.0%
ACAATATTCTCTGCACACAA+TGG + chr4_3:40324556-40324575 Msa0640880:intron 35.0%
!! TGTTGGCATGTTGATTTCAT+AGG + chr4_3:40324581-40324600 Msa0640880:intron 35.0%
GGATGAATCGGAAAAATCTT+TGG + chr4_3:40324803-40324822 Msa0640880:intron 35.0%
! GTTGAAAACATCGATTGACA+CGG + chr4_3:40324885-40324904 Msa0640880:intron 35.0%
GGTAAAGATGTTTGAGAAAC+AGG + chr4_3:40324906-40324925 Msa0640880:intron 35.0%
ACACAATGAATACGAATACG+GGG + chr4_3:40324943-40324962 Msa0640880:intron 35.0%
AATTAACACGCCTTCATGTA+GGG + chr4_3:40325104-40325123 Msa0640880:intron 35.0%
TAATATTGCACCCTACATGA+AGG - chr4_3:40325117-40325136 None:intergenic 35.0%
CATTTCCCTCATATTCACTT+TGG + chr4_3:40325402-40325421 Msa0640880:CDS 35.0%
! CCAATCTTTGTTGTAGGATT+AGG - chr4_3:40325557-40325576 None:intergenic 35.0%
CCTAATCCTACAACAAAGAT+TGG + chr4_3:40325554-40325573 Msa0640880:three_prime_UTR 35.0%
AAGCACACTCTCAAACTCAA+AGG + chr4_3:40318246-40318265 Msa0640880:five_prime_UTR 40.0%
AAATCATGCTTGCCATCACA+TGG - chr4_3:40319164-40319183 None:intergenic 40.0%
ATGTGATGGCAAGCATGATT+TGG + chr4_3:40319163-40319182 Msa0640880:intron 40.0%
TCTCTCCTATGTCCTTGATT+TGG + chr4_3:40319190-40319209 Msa0640880:intron 40.0%
TTGCACCAAATCAAGGACAT+AGG - chr4_3:40319198-40319217 None:intergenic 40.0%
ATGCTTTACAGCACTATGGT+TGG - chr4_3:40319249-40319268 None:intergenic 40.0%
CTTGATGCTTTACAGCACTA+TGG - chr4_3:40319253-40319272 None:intergenic 40.0%
GTACACTGCATCTGTACTTA+AGG - chr4_3:40319315-40319334 None:intergenic 40.0%
ACTAGTGGTTAAGACTTTGG+TGG + chr4_3:40319478-40319497 Msa0640880:intron 40.0%
!! CACTTTTTACTGACACTGCA+AGG - chr4_3:40319585-40319604 None:intergenic 40.0%
GCTAGATGAAAATGTGTGTG+TGG - chr4_3:40319678-40319697 None:intergenic 40.0%
! CACACACATTTTCATCTAGC+TGG + chr4_3:40319678-40319697 Msa0640880:intron 40.0%
ATCTAGCTGGACAATTGTAG+TGG + chr4_3:40319691-40319710 Msa0640880:intron 40.0%
!! GAGAGAGTCTACTTTTAAGG+GGG - chr4_3:40319723-40319742 None:intergenic 40.0%
!! CAGCCTTTGGTAATGTTGAT+TGG + chr4_3:40319906-40319925 Msa0640880:intron 40.0%
ATTCGTCTTGTGCAGAGATT+TGG + chr4_3:40320030-40320049 Msa0640880:intron 40.0%
! CTTATTTGGTTCCCTCTTTG+AGG + chr4_3:40320308-40320327 Msa0640880:intron 40.0%
CATTTCCTCTAACCTCAAAG+AGG - chr4_3:40320323-40320342 None:intergenic 40.0%
!! CTCTTTGAGGTTAGAGGAAA+TGG + chr4_3:40320321-40320340 Msa0640880:intron 40.0%
TGAGGTTAGAGGAAATGGAA+TGG + chr4_3:40320326-40320345 Msa0640880:intron 40.0%
TCACGACCAACAAATTGATG+TGG + chr4_3:40320465-40320484 Msa0640880:intron 40.0%
AAGTGCATGTATGGTAAGTG+GGG - chr4_3:40320520-40320539 None:intergenic 40.0%
CAAGTGCATGTATGGTAAGT+GGG - chr4_3:40320521-40320540 None:intergenic 40.0%
! TCTATGTTCGCGGAGATTTT+AGG - chr4_3:40320715-40320734 None:intergenic 40.0%
TGTGAACTCATCTATGTTCG+CGG - chr4_3:40320725-40320744 None:intergenic 40.0%
TGTATTGGGATAGTGTCTCT+TGG - chr4_3:40320752-40320771 None:intergenic 40.0%
GACACTATCCCAATACAAAG+AGG + chr4_3:40320755-40320774 Msa0640880:intron 40.0%
! ATCCAGTACCTTTTTGGACA+GGG - chr4_3:40321412-40321431 None:intergenic 40.0%
!!! GTTTTTTTTTGTGGTGGCTG+GGG - chr4_3:40321774-40321793 None:intergenic 40.0%
CATCACTCTCCTAACAAAAG+TGG - chr4_3:40321989-40322008 None:intergenic 40.0%
!! GCTTTTAGGAGTTAGGACTT+AGG + chr4_3:40322076-40322095 Msa0640880:intron 40.0%
CAAAGAGGCAACTACTAACT+AGG + chr4_3:40322373-40322392 Msa0640880:intron 40.0%
TGTGATTGTTGTCATTCAGG+GGG - chr4_3:40322400-40322419 None:intergenic 40.0%
GTGTGATTGTTGTCATTCAG+GGG - chr4_3:40322401-40322420 None:intergenic 40.0%
GTTACGTAACGTCACAATCT+TGG - chr4_3:40322702-40322721 None:intergenic 40.0%
TGCATGCATGTGTTCTACTA+GGG - chr4_3:40322764-40322783 None:intergenic 40.0%
ATGCATGCATGTGTTCTACT+AGG - chr4_3:40322765-40322784 None:intergenic 40.0%
CTGGTACTTCAGTTAGTGAT+CGG + chr4_3:40322866-40322885 Msa0640880:intron 40.0%
GCAAGACAAATAAAGGACTC+TGG + chr4_3:40322985-40323004 Msa0640880:intron 40.0%
CTGCAACTAGCAAACAAGAT+TGG - chr4_3:40323389-40323408 None:intergenic 40.0%
! CAATCTTGTTTGCTAGTTGC+AGG + chr4_3:40323387-40323406 Msa0640880:intron 40.0%
!! TTCCCTATTGTGTTGTTTGC+AGG + chr4_3:40323712-40323731 Msa0640880:intron 40.0%
!! TCCCTATTGTGTTGTTTGCA+GGG + chr4_3:40323713-40323732 Msa0640880:intron 40.0%
TCCCTGCAAACAACACAATA+GGG - chr4_3:40323717-40323736 None:intergenic 40.0%
TTTGCAGGGAGGAAATTCAA+AGG + chr4_3:40323727-40323746 Msa0640880:intron 40.0%
TAATCCAGATATCAGCCACA+GGG + chr4_3:40323761-40323780 Msa0640880:CDS 40.0%
! TTCTATCACTGTCTTTTGGG+TGG - chr4_3:40323912-40323931 None:intergenic 40.0%
TATTGTGCCTTCTCAGGAAT+GGG - chr4_3:40324252-40324271 None:intergenic 40.0%
ATATTGTGCCTTCTCAGGAA+TGG - chr4_3:40324253-40324272 None:intergenic 40.0%
TGTAGGAGAGTAGCCAAAAA+AGG + chr4_3:40324525-40324544 Msa0640880:intron 40.0%
AAAACACAACATTGCCATGG+TGG + chr4_3:40324698-40324717 Msa0640880:intron 40.0%
GCATCTGGATCTTGTTGATA+GGG - chr4_3:40324771-40324790 None:intergenic 40.0%
CTATCAACAAGATCCAGATG+CGG + chr4_3:40324770-40324789 Msa0640880:intron 40.0%
ATTAGGGTCGAAAGCGATTT+GGG + chr4_3:40324862-40324881 Msa0640880:intron 40.0%
CAATTAACACGCCTTCATGT+AGG + chr4_3:40325103-40325122 Msa0640880:intron 40.0%
GCTTCCCAAAGTGAATATGA+GGG - chr4_3:40325410-40325429 None:intergenic 40.0%
TGCTTCCCAAAGTGAATATG+AGG - chr4_3:40325411-40325430 None:intergenic 40.0%
CAAAGTTGGATCATGGTGAA+GGG + chr4_3:40325436-40325455 Msa0640880:CDS 40.0%
! CAGTCTCCAATCTTTGTTGT+AGG - chr4_3:40325563-40325582 None:intergenic 40.0%
CTACAACAAAGATTGGAGAC+TGG + chr4_3:40325561-40325580 Msa0640880:three_prime_UTR 40.0%
! GAGTTTGAGAGTGTGCTTAG+TGG - chr4_3:40318244-40318263 None:intergenic 45.0%
CTTCTGCAACACCATTCTAG+CGG + chr4_3:40318349-40318368 Msa0640880:CDS 45.0%
ATAAGCTAGCAGGAGTGAGA+AGG - chr4_3:40319781-40319800 None:intergenic 45.0%
!! AAGCAAAGGGCACCGTATAT+AGG - chr4_3:40319988-40320007 None:intergenic 45.0%
GGAGGAAATGGCTGAAGTAA+TGG - chr4_3:40320255-40320274 None:intergenic 45.0%
AAACATACCTGAGGGAGTTG+AGG - chr4_3:40320279-40320298 None:intergenic 45.0%
GCAAGTGCATGTATGGTAAG+TGG - chr4_3:40320522-40320541 None:intergenic 45.0%
GAAGTCACGGACAATGTCTT+AGG - chr4_3:40320628-40320647 None:intergenic 45.0%
GTCTGCTCCCTCTTTGTATT+GGG - chr4_3:40320766-40320785 None:intergenic 45.0%
TCTATGGTCCCTGTCCAAAA+AGG + chr4_3:40321401-40321420 Msa0640880:intron 45.0%
! GATCCAGTACCTTTTTGGAC+AGG - chr4_3:40321413-40321432 None:intergenic 45.0%
! GGATCGATCCAGTACCTTTT+TGG - chr4_3:40321418-40321437 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4_3:40321685-40321704 Msa0640880:intron 45.0%
TCATGAAGAAGCAAGCAGCA+AGG + chr4_3:40322181-40322200 Msa0640880:CDS 45.0%
GAAGCAAGCAGCAAGGAAAT+TGG + chr4_3:40322188-40322207 Msa0640880:CDS 45.0%
TAGTAGAGCACGAACATCCT+AGG + chr4_3:40322255-40322274 Msa0640880:CDS 45.0%
GTGATTGTTGTCATTCAGGG+GGG - chr4_3:40322399-40322418 None:intergenic 45.0%
GTAACGTCACAATCTTGGAG+GGG - chr4_3:40322697-40322716 None:intergenic 45.0%
CGTAACGTCACAATCTTGGA+GGG - chr4_3:40322698-40322717 None:intergenic 45.0%
ACGTAACGTCACAATCTTGG+AGG - chr4_3:40322699-40322718 None:intergenic 45.0%
CATGTGTTCTACTAGGGCAT+AGG - chr4_3:40322758-40322777 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG + chr4_3:40323294-40323313 Msa0640880:CDS 45.0%
ATGAACCGGTTGTAAGCAGA+AGG - chr4_3:40323302-40323321 None:intergenic 45.0%
CTCCCTGCAAACAACACAAT+AGG - chr4_3:40323718-40323737 None:intergenic 45.0%
!! CTATTGTGTTGTTTGCAGGG+AGG + chr4_3:40323716-40323735 Msa0640880:intron 45.0%
GTGGCTGATATCTGGATTAC+TGG - chr4_3:40323760-40323779 None:intergenic 45.0%
GTAATCCAGATATCAGCCAC+AGG + chr4_3:40323760-40323779 Msa0640880:CDS 45.0%
ATTGTGCCTTCTCAGGAATG+GGG - chr4_3:40324251-40324270 None:intergenic 45.0%
TTTCTTCCTCTATCGGGTCT+TGG + chr4_3:40324362-40324381 Msa0640880:intron 45.0%
! CTCTGCACACAATGGTTTGT+TGG + chr4_3:40324564-40324583 Msa0640880:intron 45.0%
! ATTGCCATGGTGGTTTTCGA+GGG + chr4_3:40324708-40324727 Msa0640880:intron 45.0%
TGATAGGGCTGTCATCTCAA+TGG - chr4_3:40324756-40324775 None:intergenic 45.0%
CGCATCTGGATCTTGTTGAT+AGG - chr4_3:40324772-40324791 None:intergenic 45.0%
GATTAGGGTCGAAAGCGATT+TGG + chr4_3:40324861-40324880 Msa0640880:intron 45.0%
TTAGGGTCGAAAGCGATTTG+GGG + chr4_3:40324863-40324882 Msa0640880:intron 45.0%
CAATGAATACGAATACGGGG+AGG + chr4_3:40324946-40324965 Msa0640880:intron 45.0%
CAGCAAGCAAAGTTGGATCA+TGG + chr4_3:40325429-40325448 Msa0640880:CDS 45.0%
GCAAAGTTGGATCATGGTGA+AGG + chr4_3:40325435-40325454 Msa0640880:CDS 45.0%
GGGACTCGTGAAAAGACTAA+TGG + chr4_3:40325456-40325475 Msa0640880:CDS 45.0%
!! AAAAATAAAACAAATAAAAA+AGG + chr4_3:40320494-40320513 Msa0640880:intron 5.0%
!! AAAAAAAAAAAAAATATAAG+AGG - chr4_3:40320865-40320884 None:intergenic 5.0%
!! TATTAAAAAAACATAAATTA+GGG - chr4_3:40321162-40321181 None:intergenic 5.0%
!!! ATAATTAATATTTTAAACAT+TGG - chr4_3:40325602-40325621 None:intergenic 5.0%
!! CAAAGGGCACCGTATATAGG+TGG - chr4_3:40319985-40320004 None:intergenic 50.0%
!! GGTTCCCTCTTTGAGGTTAG+AGG + chr4_3:40320315-40320334 Msa0640880:intron 50.0%
GGTCTGCTCCCTCTTTGTAT+TGG - chr4_3:40320767-40320786 None:intergenic 50.0%
! GTCCCTGTCCAAAAAGGTAC+TGG + chr4_3:40321407-40321426 Msa0640880:intron 50.0%
GAGTGTGACTCACGACGAAT+GGG - chr4_3:40322287-40322306 None:intergenic 50.0%
AGAGTGTGACTCACGACGAA+TGG - chr4_3:40322288-40322307 None:intergenic 50.0%
CTATGTCCAAGACCCGATAG+AGG - chr4_3:40324371-40324390 None:intergenic 50.0%
! CATTGCCATGGTGGTTTTCG+AGG + chr4_3:40324707-40324726 Msa0640880:intron 50.0%
!! TTGCCATGGTGGTTTTCGAG+GGG + chr4_3:40324709-40324728 Msa0640880:intron 50.0%
ATGAGGGAGTGGCGCAATTA+AGG + chr4_3:40325007-40325026 Msa0640880:intron 50.0%
TGGGAAGCAGCAAGCAAAGT+TGG + chr4_3:40325422-40325441 Msa0640880:CDS 50.0%
GGGAGTTGAGGAGGAGGAAA+TGG - chr4_3:40320267-40320286 None:intergenic 55.0%
CATACCTGAGGGAGTTGAGG+AGG - chr4_3:40320276-40320295 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4_3:40321683-40321702 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4_3:40321680-40321699 Msa0640880:intron 55.0%
AACCCCAGCCACCACAATCT+GGG + chr4_3:40321741-40321760 Msa0640880:intron 55.0%
AACCCCAGATTGTGGTGGCT+GGG - chr4_3:40321747-40321766 None:intergenic 55.0%
GTTCGAACCCCAGATTGTGG+TGG - chr4_3:40321752-40321771 None:intergenic 55.0%
CGACGAATGGGAGGAATCCT+AGG - chr4_3:40322275-40322294 None:intergenic 55.0%
TGTGACTCACGACGAATGGG+AGG - chr4_3:40322284-40322303 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG + chr4_3:40323764-40323783 Msa0640880:CDS 55.0%
GGCATTCCCCATTCCTGAGA+AGG + chr4_3:40324242-40324261 Msa0640880:intron 55.0%
!! TGCCATGGTGGTTTTCGAGG+GGG + chr4_3:40324710-40324729 Msa0640880:intron 55.0%
AGATCCAGATGCGGCGAATG+TGG + chr4_3:40324779-40324798 Msa0640880:intron 55.0%
!! GGCGAATGTGGCGGATGAAT+CGG + chr4_3:40324791-40324810 Msa0640880:intron 55.0%
GGCTAGGGTTTGAGGGAGAA+TGG - chr4_3:40324981-40325000 None:intergenic 55.0%
TTCCCTCGGCTAGGGTTTGA+GGG - chr4_3:40324988-40325007 None:intergenic 55.0%
ATTCCCTCGGCTAGGGTTTG+AGG - chr4_3:40324989-40325008 None:intergenic 55.0%
AAACCCTAGCCGAGGGAATG+AGG + chr4_3:40324990-40325009 Msa0640880:intron 55.0%
AACCCTAGCCGAGGGAATGA+GGG + chr4_3:40324991-40325010 Msa0640880:intron 55.0%
TCCTCCTCCTCAACTCCCTC+AGG + chr4_3:40320269-40320288 Msa0640880:CDS 60.0%
ACCTGAGGGAGTTGAGGAGG+AGG - chr4_3:40320273-40320292 None:intergenic 60.0%
GAACCCCAGCCACCACAATC+TGG + chr4_3:40321740-40321759 Msa0640880:intron 60.0%
ACCCCAGCCACCACAATCTG+GGG + chr4_3:40321742-40321761 Msa0640880:intron 60.0%
ACCCCAGATTGTGGTGGCTG+GGG - chr4_3:40321746-40321765 None:intergenic 60.0%
GAACCCCAGATTGTGGTGGC+TGG - chr4_3:40321748-40321767 None:intergenic 60.0%
GGGGTTCGAACCCCAGATTG+TGG - chr4_3:40321755-40321774 None:intergenic 60.0%
GTCACAATCTTGGAGGGGCC+GGG - chr4_3:40322692-40322711 None:intergenic 60.0%
CGTCACAATCTTGGAGGGGC+CGG - chr4_3:40322693-40322712 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG - chr4_3:40323768-40323787 None:intergenic 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG - chr4_3:40323779-40323798 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG + chr4_3:40323779-40323798 Msa0640880:CDS 60.0%
!! GCCATGGTGGTTTTCGAGGG+GGG + chr4_3:40324711-40324730 Msa0640880:intron 60.0%
ACCCCCCTCGAAAACCACCA+TGG - chr4_3:40324715-40324734 None:intergenic 60.0%
!!! TGGTTTTCGAGGGGGGTGCT+CGG + chr4_3:40324718-40324737 Msa0640880:intron 60.0%
TCCAGATGCGGCGAATGTGG+CGG + chr4_3:40324782-40324801 Msa0640880:intron 60.0%
TCTCCCTCAAACCCTAGCCG+AGG + chr4_3:40324982-40325001 Msa0640880:intron 60.0%
CTCCCTCAAACCCTAGCCGA+GGG + chr4_3:40324983-40325002 Msa0640880:intron 60.0%
CTCCCTCATTCCCTCGGCTA+GGG - chr4_3:40324996-40325015 None:intergenic 60.0%
ACTCCCTCATTCCCTCGGCT+AGG - chr4_3:40324997-40325016 None:intergenic 60.0%
TAGCCGAGGGAATGAGGGAG+TGG + chr4_3:40324996-40325015 Msa0640880:intron 60.0%
TCCGCCACATTCGCCGCATC+TGG - chr4_3:40324786-40324805 None:intergenic 65.0%
GCGCCACTCCCTCATTCCCT+CGG - chr4_3:40325002-40325021 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40318230 40325717 40318230 ID=Msa0640880;Name=Msa0640880
chr4_3 mRNA 40318230 40325717 40318230 ID=Msa0640880-mRNA-1;Parent=Msa0640880;Name=Msa0640880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=69|1|1|1|1|1|6|229|180
chr4_3 exon 40318230 40318370 40318230 ID=Msa0640880-mRNA-1:exon:9074;Parent=Msa0640880-mRNA-1
chr4_3 exon 40320165 40320290 40320165 ID=Msa0640880-mRNA-1:exon:9075;Parent=Msa0640880-mRNA-1
chr4_3 exon 40322167 40322293 40322167 ID=Msa0640880-mRNA-1:exon:9076;Parent=Msa0640880-mRNA-1
chr4_3 exon 40323276 40323324 40323276 ID=Msa0640880-mRNA-1:exon:9077;Parent=Msa0640880-mRNA-1
chr4_3 exon 40323734 40323809 40323734 ID=Msa0640880-mRNA-1:exon:9078;Parent=Msa0640880-mRNA-1
chr4_3 exon 40325396 40325717 40325396 ID=Msa0640880-mRNA-1:exon:9079;Parent=Msa0640880-mRNA-1
chr4_3 five_prime_UTR 40318230 40318298 40318230 ID=Msa0640880-mRNA-1:five_prime_utr;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40318299 40318370 40318299 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40320165 40320290 40320165 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40322167 40322293 40322167 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40323276 40323324 40323276 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40323734 40323809 40323734 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 CDS 40325396 40325488 40325396 ID=Msa0640880-mRNA-1:cds;Parent=Msa0640880-mRNA-1
chr4_3 three_prime_UTR 40325489 40325717 40325489 ID=Msa0640880-mRNA-1:three_prime_utr;Parent=Msa0640880-mRNA-1
Gene Sequence

>Msa0640880

ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>Msa0640880

MSMDMIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQKQHIIHEEASSKEIGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*