Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322030 | XP_003595184.1 | 95.430 | 547 | 15 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322030 | sp|Q9LTS3|CKX3_ARATH | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175730 | Msa0322030 | 0.800805 | 1.213082e-48 | -8.615850e-47 |
| Msa0225220 | Msa0322030 | 0.811548 | 6.625342e-51 | -8.615850e-47 |
| Msa0245280 | Msa0322030 | 0.963431 | 4.466405e-122 | -8.615850e-47 |
| Msa0322030 | Msa0322110 | 0.968634 | 5.880326e-129 | -8.615850e-47 |
| Msa0322030 | Msa0342010 | 0.804474 | 2.123113e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322030 | MtrunA17_Chr2g0299371 | 95.430 | 547 | 15 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1061 |
| Msa0322030 | MtrunA17_Chr4g0071111 | 70.772 | 544 | 139 | 9 | 1 | 542 | 1 | 526 | 0.0 | 790 |
| Msa0322030 | MtrunA17_Chr4g0071121 | 59.036 | 498 | 183 | 7 | 47 | 542 | 40 | 518 | 0.0 | 598 |
| Msa0322030 | MtrunA17_Chr3g0141981 | 50.929 | 538 | 229 | 12 | 12 | 542 | 14 | 523 | 2.25e-176 | 508 |
| Msa0322030 | MtrunA17_Chr4g0020621 | 48.824 | 510 | 229 | 9 | 40 | 541 | 36 | 521 | 2.70e-164 | 477 |
| Msa0322030 | MtrunA17_Chr3g0091141 | 51.429 | 490 | 205 | 12 | 61 | 544 | 81 | 543 | 2.95e-164 | 478 |
| Msa0322030 | MtrunA17_Chr7g0257061 | 49.695 | 491 | 214 | 10 | 59 | 541 | 71 | 536 | 1.05e-159 | 466 |
| Msa0322030 | MtrunA17_Chr1g0150941 | 43.232 | 495 | 247 | 12 | 60 | 544 | 36 | 506 | 1.68e-133 | 397 |
| Msa0322030 | MtrunA17_Chr2g0299361 | 55.108 | 323 | 122 | 6 | 221 | 541 | 9 | 310 | 4.89e-118 | 351 |
| Msa0322030 | MtrunA17_Chr2g0299351 | 52.514 | 179 | 73 | 4 | 46 | 221 | 36 | 205 | 1.67e-53 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322030 | AT5G56970.1 | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 602 |
| Msa0322030 | AT1G75450.1 | 51.017 | 541 | 230 | 11 | 11 | 543 | 9 | 522 | 0.0 | 521 |
| Msa0322030 | AT1G75450.2 | 50.923 | 542 | 230 | 12 | 11 | 543 | 5 | 519 | 1.62e-179 | 516 |
| Msa0322030 | AT4G29740.2 | 49.803 | 508 | 224 | 10 | 46 | 542 | 37 | 524 | 2.64e-173 | 500 |
| Msa0322030 | AT2G19500.1 | 48.162 | 517 | 235 | 6 | 34 | 541 | 9 | 501 | 9.02e-172 | 495 |
| Msa0322030 | AT5G56970.2 | 58.481 | 395 | 146 | 4 | 50 | 444 | 47 | 423 | 2.16e-164 | 474 |
| Msa0322030 | AT2G41510.1 | 46.461 | 551 | 246 | 14 | 9 | 541 | 20 | 539 | 1.99e-161 | 472 |
| Msa0322030 | AT2G41510.2 | 49.590 | 488 | 213 | 10 | 62 | 541 | 139 | 601 | 1.50e-160 | 472 |
| Msa0322030 | AT3G63440.1 | 48.381 | 494 | 219 | 11 | 61 | 543 | 60 | 528 | 1.09e-158 | 463 |
| Msa0322030 | AT5G21482.1 | 45.525 | 514 | 250 | 14 | 41 | 544 | 30 | 523 | 1.12e-141 | 419 |
| Msa0322030 | AT4G29740.1 | 50.122 | 409 | 177 | 7 | 46 | 444 | 37 | 428 | 1.18e-134 | 398 |
| Msa0322030 | AT2G41510.3 | 46.102 | 449 | 201 | 11 | 9 | 444 | 20 | 440 | 6.64e-126 | 376 |
| Msa0322030 | AT4G29740.3 | 47.368 | 342 | 148 | 8 | 46 | 372 | 37 | 361 | 7.78e-100 | 306 |
Find 114 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGTGCACCGGATTATT+TGG | 0.164248 | 2_4:+24222968 | Msa0322030:CDS |
| AGAAGATCTCCAATTATTTA+TGG | 0.166494 | 2_4:-24223018 | None:intergenic |
| AAATCTAAGATTCGAGATTT+TGG | 0.190122 | 2_4:-24223632 | None:intergenic |
| AGAATGGTCATCATAATATT+TGG | 0.193226 | 2_4:-24223117 | None:intergenic |
| ACTCAAGTGGGTTTGATAAT+TGG | 0.218931 | 2_4:+24224293 | Msa0322030:CDS |
| CTTGGAGGATTAGGACAATT+TGG | 0.239178 | 2_4:+24221799 | Msa0322030:CDS |
| ATGGACTTGCACCTGTTTCT+TGG | 0.244954 | 2_4:+24220094 | Msa0322030:CDS |
| GAAGCTAGTTCAATGGCTTT+TGG | 0.253556 | 2_4:-24219733 | None:intergenic |
| TGATGGTGTTGTTGGAATTA+AGG | 0.254916 | 2_4:+24219981 | Msa0322030:CDS |
| CATGGAGTTCTTGGAGGATT+AGG | 0.266390 | 2_4:+24221790 | Msa0322030:CDS |
| GAACTAGCTTCAAGTGATTA+TGG | 0.267068 | 2_4:+24219745 | Msa0322030:CDS |
| GACTTACTTGTTTCTATTCA+TGG | 0.273299 | 2_4:-24223723 | None:intergenic |
| GATTATCTTTACTTGACTAT+TGG | 0.278961 | 2_4:+24220120 | Msa0322030:CDS |
| TCATTGAGATTAACCGTTCT+TGG | 0.285261 | 2_4:-24222935 | None:intergenic |
| CATCAATTGGATGTTGTTAC+TGG | 0.294573 | 2_4:+24220210 | Msa0322030:CDS |
| ATTAGGAGAATGAAGTATAT+TGG | 0.295442 | 2_4:-24219592 | None:intergenic |
| ATCAAGGACCCATAAATAAT+TGG | 0.295533 | 2_4:+24223009 | Msa0322030:CDS |
| GATTAACCGTTCTTGGTCTT+TGG | 0.297638 | 2_4:-24222928 | None:intergenic |
| GAATTATTTCATGGAGTTCT+TGG | 0.305159 | 2_4:+24221781 | Msa0322030:CDS |
| GAGGATCCTAAGGTTGGATT+TGG | 0.309767 | 2_4:+24220009 | Msa0322030:CDS |
| ACTATGTCGTTTACCGTTGA+TGG | 0.318033 | 2_4:-24219805 | None:intergenic |
| CCAGGTGATAGAATCATTCT+TGG | 0.329695 | 2_4:-24224478 | None:intergenic |
| AACGTGGTATGGTTATTATT+AGG | 0.338462 | 2_4:-24219609 | None:intergenic |
| GAAGATCTCCAATTATTTAT+GGG | 0.349964 | 2_4:-24223017 | None:intergenic |
| GAAGAGTGGACAAACCATTT+TGG | 0.351682 | 2_4:+24224409 | Msa0322030:CDS |
| CTCTCTAATGCTGGTATTAG+TGG | 0.355144 | 2_4:+24220150 | Msa0322030:CDS |
| AATTACTAGTGTTCATCAAT+TGG | 0.364831 | 2_4:+24220197 | Msa0322030:CDS |
| AACAATTCGGAATTATTTCA+TGG | 0.370002 | 2_4:+24221772 | Msa0322030:CDS |
| ATGTTGGAGGGGAACAACTA+TGG | 0.370599 | 2_4:+24220043 | Msa0322030:CDS |
| AAAATAGAGAAAGGAGTGTT+TGG | 0.381011 | 2_4:-24219513 | None:intergenic |
| AATGTTAATGATGGTGTTGT+TGG | 0.395744 | 2_4:+24219973 | Msa0322030:CDS |
| CGAATTGTTCTCTTTAGAAC+AGG | 0.402588 | 2_4:-24221758 | None:intergenic |
| AGTGGACAAACCTTTCGTTA+TGG | 0.403161 | 2_4:+24220168 | Msa0322030:CDS |
| AGAATGAAGTATATTGGAAA+AGG | 0.406936 | 2_4:-24219586 | None:intergenic |
| AAAAGTGTACGTACCCTCTT+TGG | 0.410686 | 2_4:-24221859 | None:intergenic |
| TTGTATGAAACACTTGAGTA+TGG | 0.412739 | 2_4:+24220075 | Msa0322030:CDS |
| CTCTTCCTGTGTGCTGTAGT+GGG | 0.416739 | 2_4:-24224392 | None:intergenic |
| TTCTATGATGGTCGGCTAAA+GGG | 0.423621 | 2_4:-24223046 | None:intergenic |
| GATGGTTGGAACACTGCTGC+TGG | 0.429043 | 2_4:-24219787 | None:intergenic |
| AGATAATCAGTCCAAGAAAC+AGG | 0.436827 | 2_4:-24220105 | None:intergenic |
| AGCTTCAATCACAAGGGCTA+TGG | 0.445392 | 2_4:+24223576 | Msa0322030:CDS |
| GATGATATCTTCTATGCTGT+TGG | 0.447156 | 2_4:+24224262 | Msa0322030:CDS |
| TTTGGATACTATGTTGATGT+TGG | 0.451809 | 2_4:+24220027 | Msa0322030:CDS |
| ACCATTCCTTCCAAATAATC+CGG | 0.458792 | 2_4:-24222978 | None:intergenic |
| ACTCTTCCTGTGTGCTGTAG+TGG | 0.461612 | 2_4:-24224393 | None:intergenic |
| ATCACTTGAAGCTAGTTCAA+TGG | 0.467851 | 2_4:-24219740 | None:intergenic |
| CAGGGATATAGTTCAGTCCT+TGG | 0.468154 | 2_4:-24223487 | None:intergenic |
| TATCTTTACTTGACTATTGG+AGG | 0.470480 | 2_4:+24220123 | Msa0322030:CDS |
| CCTCTTGCAGCTATAAGAAA+AGG | 0.470883 | 2_4:-24219862 | None:intergenic |
| ACTTACTTGTTTCTATTCAT+GGG | 0.474021 | 2_4:-24223722 | None:intergenic |
| AAGATATCATCCTCATCATC+TGG | 0.474540 | 2_4:-24224250 | None:intergenic |
| ATTCTATGATGGTCGGCTAA+AGG | 0.477868 | 2_4:-24223047 | None:intergenic |
| TAGTGATGATTTCCATTGCT+CGG | 0.478096 | 2_4:-24219653 | None:intergenic |
| TAGTATCCAAATCCAACCTT+AGG | 0.485929 | 2_4:-24220015 | None:intergenic |
| AGAGAAAGGAGTGTTTGGTT+TGG | 0.485938 | 2_4:-24219508 | None:intergenic |
| TGGCAAATTCCAAGCAATAG+AGG | 0.487424 | 2_4:-24223097 | None:intergenic |
| GAATGAAGTATATTGGAAAA+GGG | 0.490860 | 2_4:-24219585 | None:intergenic |
| TTCCCTTGTAACTCAACATA+CGG | 0.494468 | 2_4:+24223073 | Msa0322030:CDS |
| TGATGAACACTAGTAATTTG+AGG | 0.495706 | 2_4:-24220192 | None:intergenic |
| CTTATAGCTGCAAGAGGACA+AGG | 0.497305 | 2_4:+24219868 | Msa0322030:CDS |
| CATTACCACAGGACCTGTCT+TGG | 0.498772 | 2_4:+24223694 | Msa0322030:CDS |
| GGTTGATATTAAACGTGGTA+TGG | 0.500255 | 2_4:-24219620 | None:intergenic |
| ACCGGATTATTTGGAAGGAA+TGG | 0.501841 | 2_4:+24222977 | Msa0322030:CDS |
| GTACGTACCCTCTTTGGTGC+TGG | 0.509757 | 2_4:-24221853 | None:intergenic |
| TATGGGATGTTCCTCATCCA+TGG | 0.513254 | 2_4:+24223594 | Msa0322030:CDS |
| ACATACGGTCCTCTATTGCT+TGG | 0.523887 | 2_4:+24223088 | Msa0322030:CDS |
| GCTTCAATCACAAGGGCTAT+GGG | 0.524238 | 2_4:+24223577 | Msa0322030:CDS |
| GGTGTTGTTGTTGACATGAA+AGG | 0.527755 | 2_4:+24219925 | Msa0322030:CDS |
| GGACCGTATGTTGAGTTACA+AGG | 0.530231 | 2_4:-24223076 | None:intergenic |
| ATCTTTACTTGACTATTGGA+GGG | 0.531975 | 2_4:+24220124 | Msa0322030:CDS |
| TTCATGGGATAAACCAAGAC+AGG | 0.538621 | 2_4:-24223707 | None:intergenic |
| GATACTATGTTGATGTTGGA+GGG | 0.539216 | 2_4:+24220031 | Msa0322030:CDS |
| GTGTTGTTGTTGACATGAAA+GGG | 0.541577 | 2_4:+24219926 | Msa0322030:CDS |
| CCAAGAATGATTCTATCACC+TGG | 0.543424 | 2_4:+24224478 | Msa0322030:CDS |
| TTCTTGAATAGAGTCAGAAG+TGG | 0.544445 | 2_4:+24223545 | Msa0322030:CDS |
| CAAGGGAAAGTATTCTATGA+TGG | 0.544620 | 2_4:-24223058 | None:intergenic |
| TTATTTCATGGAGTTCTTGG+AGG | 0.545601 | 2_4:+24221784 | Msa0322030:CDS |
| TTGTTGAAGATTCTTTGTCC+AGG | 0.547679 | 2_4:-24224496 | None:intergenic |
| GGATACTATGTTGATGTTGG+AGG | 0.550954 | 2_4:+24220030 | Msa0322030:CDS |
| AGTGCACCGGATTATTTGGA+AGG | 0.552176 | 2_4:+24222972 | Msa0322030:CDS |
| CAAGGACTGAACTATATCCC+TGG | 0.552415 | 2_4:+24223488 | Msa0322030:CDS |
| CTGTTCTAAAGAGAACAATT+CGG | 0.554065 | 2_4:+24221759 | Msa0322030:CDS |
| GGTATAAACATATTAAGCCA+TGG | 0.558758 | 2_4:-24223611 | None:intergenic |
| TGCCATAGCTTGTCCTCGTG+TGG | 0.560100 | 2_4:-24219896 | None:intergenic |
| GACAATTTGGAATTATAACA+AGG | 0.561322 | 2_4:+24221812 | Msa0322030:CDS |
| ATGGTTGGAACACTGCTGCT+GGG | 0.566755 | 2_4:-24219786 | None:intergenic |
| TGTCGTTTACCGTTGATGGT+TGG | 0.568467 | 2_4:-24219801 | None:intergenic |
| GAACGGTTAATCTCAATGAA+AGG | 0.571059 | 2_4:+24222939 | Msa0322030:CDS |
| GGAGGGACACTCTCTAATGC+TGG | 0.573132 | 2_4:+24220141 | Msa0322030:CDS |
| AACATATTAAGCCATGGATG+AGG | 0.575581 | 2_4:-24223605 | None:intergenic |
| AGCAGTGTTCCAACCATCAA+CGG | 0.592026 | 2_4:+24219792 | Msa0322030:CDS |
| GAGTTGAAGCTTCAATCACA+AGG | 0.592301 | 2_4:+24223569 | Msa0322030:CDS |
| TGTGTTGAGAGAATTAATAT+AGG | 0.592476 | 2_4:-24219539 | None:intergenic |
| ACTACAGCACACAGGAAGAG+TGG | 0.593070 | 2_4:+24224395 | Msa0322030:CDS |
| CCTACGGTTGATATTAAACG+TGG | 0.599631 | 2_4:-24219625 | None:intergenic |
| TTCTGAAAACAATGTGAACA+AGG | 0.599954 | 2_4:+24223136 | Msa0322030:CDS |
| AGCAACAATACCAGATGATG+AGG | 0.606041 | 2_4:+24224240 | Msa0322030:CDS |
| GGAAAGTATTCTATGATGGT+CGG | 0.607953 | 2_4:-24223054 | None:intergenic |
| TCTTGAGCCAGCACCAAAGA+GGG | 0.608805 | 2_4:+24221846 | Msa0322030:CDS |
| TCTTCCTGTGTGCTGTAGTG+GGG | 0.609971 | 2_4:-24224391 | None:intergenic |
| TTCCACACGAGGACAAGCTA+TGG | 0.612982 | 2_4:+24219894 | Msa0322030:CDS |
| ACAATTTGGAATTATAACAA+GGG | 0.614455 | 2_4:+24221813 | Msa0322030:CDS |
| CTCTTGAGCCAGCACCAAAG+AGG | 0.621715 | 2_4:+24221845 | Msa0322030:CDS |
| CCGTAGGTAAAACCGAGCAA+TGG | 0.627493 | 2_4:+24219641 | Msa0322030:CDS |
| GACCGTATGTTGAGTTACAA+GGG | 0.634995 | 2_4:-24223075 | None:intergenic |
| AATTTGAGGACCATAACGAA+AGG | 0.636962 | 2_4:-24220178 | None:intergenic |
| GGACAAGCTATGGCACGTGA+TGG | 0.637248 | 2_4:+24219904 | Msa0322030:CDS |
| ATACTATGTTGATGTTGGAG+GGG | 0.660327 | 2_4:+24220032 | Msa0322030:CDS |
| ATAAACCAAGACAGGTCCTG+TGG | 0.671706 | 2_4:-24223699 | None:intergenic |
| CTGCTGGGAATTCATGTACG+AGG | 0.686402 | 2_4:-24219771 | None:intergenic |
| CCACGTTTAATATCAACCGT+AGG | 0.694085 | 2_4:+24219625 | Msa0322030:CDS |
| TCTTCCCCACTACAGCACAC+AGG | 0.695759 | 2_4:+24224387 | Msa0322030:CDS |
| GGACAAGGTCATTCCACACG+AGG | 0.715309 | 2_4:+24219883 | Msa0322030:CDS |
| AGTTGAAGCTTCAATCACAA+GGG | 0.722424 | 2_4:+24223570 | Msa0322030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAAATGTTAATGA+TGG | + | chr2_4:24219964-24219983 | Msa0322030:CDS | 10.0% |
| !! | ATAAAAAAAAAACATATGTT+AGG | + | chr2_4:24220998-24221017 | Msa0322030:intron | 10.0% |
| !! | TTTATATATGATAAAAGATT+TGG | + | chr2_4:24221040-24221059 | Msa0322030:intron | 10.0% |
| !!! | TTAAATGTTTTTTTAATCTT+AGG | - | chr2_4:24222128-24222147 | None:intergenic | 10.0% |
| !!! | TAATTTAATTTTTTTTCAGA+TGG | + | chr2_4:24224203-24224222 | Msa0322030:intron | 10.0% |
| !!! | AATTTAATTTTTTTTCAGAT+GGG | + | chr2_4:24224204-24224223 | Msa0322030:intron | 10.0% |
| !! | AATAAAAGAATGAATTTAGA+TGG | - | chr2_4:24220260-24220279 | None:intergenic | 15.0% |
| !!! | ATATCAAATTACTTTTTTGA+GGG | + | chr2_4:24220422-24220441 | Msa0322030:intron | 15.0% |
| !!! | ATTCCAATTTTTTTTTTTGT+GGG | - | chr2_4:24220528-24220547 | None:intergenic | 15.0% |
| !!! | AATTCCAATTTTTTTTTTTG+TGG | - | chr2_4:24220529-24220548 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAGTTTATTTAT+CGG | + | chr2_4:24220581-24220600 | Msa0322030:intron | 15.0% |
| !!! | TCTTTTATCATATATAAAAC+AGG | - | chr2_4:24221038-24221057 | None:intergenic | 15.0% |
| !!! | AACAAAAATTTTAAAAGTAG+AGG | - | chr2_4:24221078-24221097 | None:intergenic | 15.0% |
| !!! | AATTTTTCAAAAACAAGAAA+GGG | - | chr2_4:24221240-24221259 | None:intergenic | 15.0% |
| !! | AGAAAATATTAATCAAGAAT+TGG | - | chr2_4:24221304-24221323 | None:intergenic | 15.0% |
| !!! | CTATTGATTATACATATTAT+TGG | + | chr2_4:24221338-24221357 | Msa0322030:intron | 15.0% |
| !! | ATTTGTTCAAGTATATATAA+AGG | - | chr2_4:24221587-24221606 | None:intergenic | 15.0% |
| !! | TATATATACTTGAACAAATA+AGG | + | chr2_4:24221588-24221607 | Msa0322030:intron | 15.0% |
| !!! | CTTAATCAAGTTTTAATTTT+TGG | + | chr2_4:24221706-24221725 | Msa0322030:intron | 15.0% |
| !!! | TTAATTTTTGGTTATTTTTC+AGG | + | chr2_4:24221718-24221737 | Msa0322030:intron | 15.0% |
| !!! | TATAGTAATCAGATATTTTA+AGG | + | chr2_4:24222452-24222471 | Msa0322030:intron | 15.0% |
| !!! | ATAGTAATCAGATATTTTAA+GGG | + | chr2_4:24222453-24222472 | Msa0322030:intron | 15.0% |
| !! | ATTAAGTTTATTTCAACTAT+TGG | - | chr2_4:24222711-24222730 | None:intergenic | 15.0% |
| !!! | ATGGTGAATTTTAATTTTAT+TGG | + | chr2_4:24222859-24222878 | Msa0322030:intron | 15.0% |
| !!! | TACTCTTTTTATAAACTAAA+CGG | + | chr2_4:24223265-24223284 | Msa0322030:intron | 15.0% |
| !!! | AATATTTTTTATGTTTGTGT+AGG | + | chr2_4:24223448-24223467 | Msa0322030:intron | 15.0% |
| !!! | GTTTTTCTCAAATAATTTAT+TGG | + | chr2_4:24223815-24223834 | Msa0322030:intron | 15.0% |
| !!! | AGAGTTTTAAAGAAAATAAA+AGG | - | chr2_4:24224121-24224140 | None:intergenic | 15.0% |
| !!! | TTACAAATTTATATAATGGA+AGG | - | chr2_4:24224159-24224178 | None:intergenic | 15.0% |
| !! | AAAAATTAAAGCTAATTAAG+AGG | + | chr2_4:24224177-24224196 | Msa0322030:intron | 15.0% |
| !!! | AAAAAAGTTTTCCATTTTTT+AGG | - | chr2_4:24224436-24224455 | None:intergenic | 15.0% |
| !!! | GATATCAAATTACTTTTTTG+AGG | + | chr2_4:24220421-24220440 | Msa0322030:intron | 20.0% |
| !!! | TATCAAATTACTTTTTTGAG+GGG | + | chr2_4:24220423-24220442 | Msa0322030:intron | 20.0% |
| !!! | GAAACATTATGTAAAAGTTT+TGG | - | chr2_4:24220747-24220766 | None:intergenic | 20.0% |
| !! | TTACATAATGTTTCTTTCTT+TGG | + | chr2_4:24220753-24220772 | Msa0322030:intron | 20.0% |
| !!! | ACTAGACCAAAAATAAATTT+TGG | - | chr2_4:24220858-24220877 | None:intergenic | 20.0% |
| !! | AATGGTTTATCTAAATCATA+CGG | - | chr2_4:24220889-24220908 | None:intergenic | 20.0% |
| !! | TTTAGATAAACCATTTCAAA+TGG | + | chr2_4:24220894-24220913 | Msa0322030:intron | 20.0% |
| !! | TTTATAAAAAGAAGCTAGAA+AGG | - | chr2_4:24220983-24221002 | None:intergenic | 20.0% |
| !! | AAATAGTGTAATACAGTTAT+AGG | - | chr2_4:24221142-24221161 | None:intergenic | 20.0% |
| !!! | GAATTTTTCAAAAACAAGAA+AGG | - | chr2_4:24221241-24221260 | None:intergenic | 20.0% |
| !!! | ACAATTTGGAATTATAACAA+GGG | + | chr2_4:24221813-24221832 | Msa0322030:CDS | 20.0% |
| !!! | TAAAGCTTGATTTTGATATA+TGG | - | chr2_4:24221985-24222004 | None:intergenic | 20.0% |
| !! | CTATTCTCATATATAATTCT+TGG | - | chr2_4:24222080-24222099 | None:intergenic | 20.0% |
| !! | TGTGTTTGAAAAAATAAATG+TGG | + | chr2_4:24222152-24222171 | Msa0322030:intron | 20.0% |
| !! | CTTACAATTATTATTGTCAA+AGG | - | chr2_4:24222183-24222202 | None:intergenic | 20.0% |
| !! | ATATCTGATTACTATACATA+AGG | - | chr2_4:24222448-24222467 | None:intergenic | 20.0% |
| !! | TAAATAAAAACTCAATTGTG+AGG | + | chr2_4:24222519-24222538 | Msa0322030:intron | 20.0% |
| !! | ACTTTATCACTATAATAACA+TGG | + | chr2_4:24222787-24222806 | Msa0322030:intron | 20.0% |
| !!! | TGAATTTTAATTTTATTGGC+AGG | + | chr2_4:24222863-24222882 | Msa0322030:intron | 20.0% |
| !! | TTAAAGTGGTATTAAATAGT+AGG | - | chr2_4:24223198-24223217 | None:intergenic | 20.0% |
| !! | TTCAAATCGTTATGAAATTT+AGG | + | chr2_4:24223315-24223334 | Msa0322030:intron | 20.0% |
| !!! | TTTTTTCATAATGAAATCCA+GGG | - | chr2_4:24223508-24223527 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATAATGAAATCC+AGG | - | chr2_4:24223509-24223528 | None:intergenic | 20.0% |
| !!! | CGAATCTTAGATTTTAATTT+AGG | + | chr2_4:24223641-24223660 | Msa0322030:CDS | 20.0% |
| !! | AAATTATTTGAGAAAAACAG+AGG | - | chr2_4:24223813-24223832 | None:intergenic | 20.0% |
| ! | TATAGGAGAAAAATAGAGAA+AGG | - | chr2_4:24219525-24219544 | None:intergenic | 25.0% |
| ! | TGTGTTGAGAGAATTAATAT+AGG | - | chr2_4:24219542-24219561 | None:intergenic | 25.0% |
| ! | GAATGAAGTATATTGGAAAA+GGG | - | chr2_4:24219588-24219607 | None:intergenic | 25.0% |
| ! | AGAATGAAGTATATTGGAAA+AGG | - | chr2_4:24219589-24219608 | None:intergenic | 25.0% |
| ! | ATTAGGAGAATGAAGTATAT+TGG | - | chr2_4:24219595-24219614 | None:intergenic | 25.0% |
| !!! | AGATATGTTGGAATTTTTTG+TGG | - | chr2_4:24219695-24219714 | None:intergenic | 25.0% |
| !!! | TATGAGTTTTTGAGATATGT+TGG | - | chr2_4:24219707-24219726 | None:intergenic | 25.0% |
| ! | GATTATCTTTACTTGACTAT+TGG | + | chr2_4:24220120-24220139 | Msa0322030:CDS | 25.0% |
| ! | AATTACTAGTGTTCATCAAT+TGG | + | chr2_4:24220197-24220216 | Msa0322030:CDS | 25.0% |
| !!! | TCAATGTTCCATTTTTATGT+TGG | + | chr2_4:24220292-24220311 | Msa0322030:intron | 25.0% |
| ! | GTTGAAAACCAACATAAAAA+TGG | - | chr2_4:24220303-24220322 | None:intergenic | 25.0% |
| !!! | TTTTATGTTGGTTTTCAACT+TGG | + | chr2_4:24220304-24220323 | Msa0322030:intron | 25.0% |
| !! | TATATACTTTCTCGACTTTT+TGG | + | chr2_4:24220332-24220351 | Msa0322030:intron | 25.0% |
| ! | TCAGTTTAATATCTGATATG+TGG | + | chr2_4:24220383-24220402 | Msa0322030:intron | 25.0% |
| !!! | ATCAAATTACTTTTTTGAGG+GGG | + | chr2_4:24220424-24220443 | Msa0322030:intron | 25.0% |
| ! | CATCCCACAAAAAAAAAAAT+TGG | + | chr2_4:24220522-24220541 | Msa0322030:intron | 25.0% |
| !!! | CTCCGATAAATAAACTTTTT+TGG | - | chr2_4:24220586-24220605 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTATGAAGTGTTT+TGG | + | chr2_4:24220829-24220848 | Msa0322030:intron | 25.0% |
| !!! | AGTTTGTTATGAAGTGTTTT+GGG | + | chr2_4:24220830-24220849 | Msa0322030:intron | 25.0% |
| !!! | GTTATTTTCTCCATTTGAAA+TGG | - | chr2_4:24220907-24220926 | None:intergenic | 25.0% |
| ! | ATTTAACAATGTTGTTGTCT+TGG | + | chr2_4:24221102-24221121 | Msa0322030:intron | 25.0% |
| ! | TTTAACAATGTTGTTGTCTT+GGG | + | chr2_4:24221103-24221122 | Msa0322030:intron | 25.0% |
| ! | TATTTACTACTACCAATTTG+TGG | + | chr2_4:24221157-24221176 | Msa0322030:intron | 25.0% |
| ! | TGACCTTAAAATTATAGACA+TGG | - | chr2_4:24221365-24221384 | None:intergenic | 25.0% |
| ! | ATTCTTTAACAAACTCATGT+GGG | - | chr2_4:24221442-24221461 | None:intergenic | 25.0% |
| ! | TATTCTTTAACAAACTCATG+TGG | - | chr2_4:24221443-24221462 | None:intergenic | 25.0% |
| !!! | TTTGGTTATTTTTCAGGAAA+AGG | + | chr2_4:24221724-24221743 | Msa0322030:intron | 25.0% |
| ! | AACAATTCGGAATTATTTCA+TGG | + | chr2_4:24221772-24221791 | Msa0322030:CDS | 25.0% |
| !! | GACAATTTGGAATTATAACA+AGG | + | chr2_4:24221812-24221831 | Msa0322030:CDS | 25.0% |
| ! | AGAATTGGGATTATTATGAA+TGG | - | chr2_4:24221940-24221959 | None:intergenic | 25.0% |
| ! | AATAAAAACATGTCATGCAT+TGG | - | chr2_4:24222237-24222256 | None:intergenic | 25.0% |
| ! | CTATGTATTGTAGTTACAAT+AGG | + | chr2_4:24222366-24222385 | Msa0322030:intron | 25.0% |
| ! | ATAGGCTTCTACAAATAATT+TGG | + | chr2_4:24222384-24222403 | Msa0322030:intron | 25.0% |
| ! | CATTTAATGATTGATGTATC+TGG | - | chr2_4:24222583-24222602 | None:intergenic | 25.0% |
| ! | TTACTAATAATGAAGACTAG+AGG | + | chr2_4:24222621-24222640 | Msa0322030:intron | 25.0% |
| ! | TACTAATAATGAAGACTAGA+GGG | + | chr2_4:24222622-24222641 | Msa0322030:intron | 25.0% |
| ! | TTGCAATGTATATCAACTAA+TGG | + | chr2_4:24222840-24222859 | Msa0322030:intron | 25.0% |
| !! | AATTTTATTGGCAGGTTAAA+TGG | + | chr2_4:24222871-24222890 | Msa0322030:intron | 25.0% |
| !! | ATTTTATTGGCAGGTTAAAT+GGG | + | chr2_4:24222872-24222891 | Msa0322030:intron | 25.0% |
| ! | GAAGATCTCCAATTATTTAT+GGG | - | chr2_4:24223020-24223039 | None:intergenic | 25.0% |
| ! | AGAAGATCTCCAATTATTTA+TGG | - | chr2_4:24223021-24223040 | None:intergenic | 25.0% |
| ! | AGAATGGTCATCATAATATT+TGG | - | chr2_4:24223120-24223139 | None:intergenic | 25.0% |
| ! | GAAAAATATTGAATTAGCGA+CGG | - | chr2_4:24223360-24223379 | None:intergenic | 25.0% |
| !!! | AAATCTAAGATTCGAGATTT+TGG | - | chr2_4:24223635-24223654 | None:intergenic | 25.0% |
| !!! | ACTTACTTGTTTCTATTCAT+GGG | - | chr2_4:24223725-24223744 | None:intergenic | 25.0% |
| ! | AGTAAGTCTTTAATTAACCT+TGG | + | chr2_4:24223738-24223757 | Msa0322030:intron | 25.0% |
| ! | AAGAAAAATAATGTGAACCA+AGG | - | chr2_4:24223758-24223777 | None:intergenic | 25.0% |
| !! | TAAATATTTTTCGCATCGTT+TGG | - | chr2_4:24224041-24224060 | None:intergenic | 25.0% |
| !! | AAAATAGAGAAAGGAGTGTT+TGG | - | chr2_4:24219516-24219535 | None:intergenic | 30.0% |
| AACGTGGTATGGTTATTATT+AGG | - | chr2_4:24219612-24219631 | None:intergenic | 30.0% | |
| !! | AATGTTAATGATGGTGTTGT+TGG | + | chr2_4:24219973-24219992 | Msa0322030:CDS | 30.0% |
| ! | TGTTGGAATTAAGGTTTTTG+AGG | + | chr2_4:24219990-24220009 | Msa0322030:CDS | 30.0% |
| TTTGGATACTATGTTGATGT+TGG | + | chr2_4:24220027-24220046 | Msa0322030:CDS | 30.0% | |
| TTGTATGAAACACTTGAGTA+TGG | + | chr2_4:24220075-24220094 | Msa0322030:CDS | 30.0% | |
| TATCTTTACTTGACTATTGG+AGG | + | chr2_4:24220123-24220142 | Msa0322030:CDS | 30.0% | |
| ATCTTTACTTGACTATTGGA+GGG | + | chr2_4:24220124-24220143 | Msa0322030:CDS | 30.0% | |
| TGATGAACACTAGTAATTTG+AGG | - | chr2_4:24220195-24220214 | None:intergenic | 30.0% | |
| ATATCTGATATGTGGTCAAA+TGG | + | chr2_4:24220391-24220410 | Msa0322030:intron | 30.0% | |
| TATCTGATATGTGGTCAAAT+GGG | + | chr2_4:24220392-24220411 | Msa0322030:intron | 30.0% | |
| GTTTATTTATCGGAGTACAA+CGG | + | chr2_4:24220591-24220610 | Msa0322030:intron | 30.0% | |
| TTTATTTATCGGAGTACAAC+GGG | + | chr2_4:24220592-24220611 | Msa0322030:intron | 30.0% | |
| !!! | TTGGTGTTTTGTTTTTTCCT+CGG | - | chr2_4:24220728-24220747 | None:intergenic | 30.0% |
| !!! | GTTTGTTATGAAGTGTTTTG+GGG | + | chr2_4:24220831-24220850 | Msa0322030:intron | 30.0% |
| !! | TGGGGACCAAAATTTATTTT+TGG | + | chr2_4:24220849-24220868 | Msa0322030:intron | 30.0% |
| TACCAATTTGTGGTTGTTAA+GGG | + | chr2_4:24221167-24221186 | Msa0322030:intron | 30.0% | |
| AGGGAGTCTTTATAAGTTAT+AGG | + | chr2_4:24221186-24221205 | Msa0322030:intron | 30.0% | |
| ! | GGTCCATGTCTATAATTTTA+AGG | + | chr2_4:24221359-24221378 | Msa0322030:intron | 30.0% |
| !! | CTGTTCTAAAGAGAACAATT+CGG | + | chr2_4:24221759-24221778 | Msa0322030:CDS | 30.0% |
| GAATTATTTCATGGAGTTCT+TGG | + | chr2_4:24221781-24221800 | Msa0322030:CDS | 30.0% | |
| TTGGGATTATTATGAATGGT+TGG | - | chr2_4:24221936-24221955 | None:intergenic | 30.0% | |
| TATAGTCTTCTAACACATGA+AGG | + | chr2_4:24222262-24222281 | Msa0322030:intron | 30.0% | |
| ATAGTCTTCTAACACATGAA+GGG | + | chr2_4:24222263-24222282 | Msa0322030:intron | 30.0% | |
| GATTACTATACATAAGGATG+AGG | - | chr2_4:24222442-24222461 | None:intergenic | 30.0% | |
| CATTGAATAACTGATGAATC+TGG | + | chr2_4:24222544-24222563 | Msa0322030:intron | 30.0% | |
| ! | GGATCAAGATCAAATGATTT+TGG | - | chr2_4:24222690-24222709 | None:intergenic | 30.0% |
| ! | TTTTTACCAAAGACCAAGAA+CGG | + | chr2_4:24222922-24222941 | Msa0322030:CDS | 30.0% |
| !!! | GGAATGGTTTTAATGAATCA+AGG | + | chr2_4:24222993-24223012 | Msa0322030:CDS | 30.0% |
| ATCAAGGACCCATAAATAAT+TGG | + | chr2_4:24223009-24223028 | Msa0322030:CDS | 30.0% | |
| ! | TGTTCACATTGTTTTCAGAA+TGG | - | chr2_4:24223136-24223155 | None:intergenic | 30.0% |
| ! | TTCTGAAAACAATGTGAACA+AGG | + | chr2_4:24223136-24223155 | Msa0322030:CDS | 30.0% |
| ATCAACGCGTAAAATTAAAG+TGG | - | chr2_4:24223212-24223231 | None:intergenic | 30.0% | |
| GGTATAAACATATTAAGCCA+TGG | - | chr2_4:24223614-24223633 | None:intergenic | 30.0% | |
| !! | GACTTACTTGTTTCTATTCA+TGG | - | chr2_4:24223726-24223745 | None:intergenic | 30.0% |
| GTCGATCTCAATTCATTATT+CGG | + | chr2_4:24223957-24223976 | Msa0322030:intron | 30.0% | |
| ACTTAGCAAGCTATGTTTAA+AGG | - | chr2_4:24224089-24224108 | None:intergenic | 30.0% | |
| ! | TTGCAATTTTGTAATCATGC+TGG | + | chr2_4:24224346-24224365 | Msa0322030:CDS | 30.0% |
| ! | TGCAATTTTGTAATCATGCT+GGG | + | chr2_4:24224347-24224366 | Msa0322030:CDS | 30.0% |
| !! | ACCATTTTGGTCCTAAAAAA+TGG | + | chr2_4:24224422-24224441 | Msa0322030:CDS | 30.0% |
| !!! | TCCATTTTTTAGGACCAAAA+TGG | - | chr2_4:24224426-24224445 | None:intergenic | 30.0% |
| ! | GGTTGATATTAAACGTGGTA+TGG | - | chr2_4:24219623-24219642 | None:intergenic | 35.0% |
| TAGTGATGATTTCCATTGCT+CGG | - | chr2_4:24219656-24219675 | None:intergenic | 35.0% | |
| ATCACTTGAAGCTAGTTCAA+TGG | - | chr2_4:24219743-24219762 | None:intergenic | 35.0% | |
| ! | GAACTAGCTTCAAGTGATTA+TGG | + | chr2_4:24219745-24219764 | Msa0322030:CDS | 35.0% |
| ! | GTGTTGTTGTTGACATGAAA+GGG | + | chr2_4:24219926-24219945 | Msa0322030:CDS | 35.0% |
| !! | TGATGGTGTTGTTGGAATTA+AGG | + | chr2_4:24219981-24220000 | Msa0322030:CDS | 35.0% |
| !! | TAAGGTTTTTGAGGATCCTA+AGG | + | chr2_4:24219999-24220018 | Msa0322030:CDS | 35.0% |
| TAGTATCCAAATCCAACCTT+AGG | - | chr2_4:24220018-24220037 | None:intergenic | 35.0% | |
| GATACTATGTTGATGTTGGA+GGG | + | chr2_4:24220031-24220050 | Msa0322030:CDS | 35.0% | |
| ATACTATGTTGATGTTGGAG+GGG | + | chr2_4:24220032-24220051 | Msa0322030:CDS | 35.0% | |
| AGATAATCAGTCCAAGAAAC+AGG | - | chr2_4:24220108-24220127 | None:intergenic | 35.0% | |
| AATTTGAGGACCATAACGAA+AGG | - | chr2_4:24220181-24220200 | None:intergenic | 35.0% | |
| CATCAATTGGATGTTGTTAC+TGG | + | chr2_4:24220210-24220229 | Msa0322030:CDS | 35.0% | |
| CTTTCGAGCATATGATTTAG+TGG | - | chr2_4:24220705-24220724 | None:intergenic | 35.0% | |
| ! | ACAATCTTCCATGTGCATTT+TGG | + | chr2_4:24220925-24220944 | Msa0322030:intron | 35.0% |
| CTTTATATGTCACTGTGCAT+TGG | - | chr2_4:24220955-24220974 | None:intergenic | 35.0% | |
| CAATGCACAGTGACATATAA+AGG | + | chr2_4:24220953-24220972 | Msa0322030:intron | 35.0% | |
| CTACCAATTTGTGGTTGTTA+AGG | + | chr2_4:24221166-24221185 | Msa0322030:intron | 35.0% | |
| !! | TTGAGTTGTTAAGCCTTTTG+GGG | - | chr2_4:24221659-24221678 | None:intergenic | 35.0% |
| !! | GTTGAGTTGTTAAGCCTTTT+GGG | - | chr2_4:24221660-24221679 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGTTAAGCCTTT+TGG | - | chr2_4:24221661-24221680 | None:intergenic | 35.0% |
| !! | CGAATTGTTCTCTTTAGAAC+AGG | - | chr2_4:24221761-24221780 | None:intergenic | 35.0% |
| TTATTTCATGGAGTTCTTGG+AGG | + | chr2_4:24221784-24221803 | Msa0322030:CDS | 35.0% | |
| ATGTGACAACGTGAAGAATT+GGG | - | chr2_4:24221954-24221973 | None:intergenic | 35.0% | |
| AATGTGACAACGTGAAGAAT+TGG | - | chr2_4:24221955-24221974 | None:intergenic | 35.0% | |
| ACTAACACAGTGTACAATGA+CGG | - | chr2_4:24222041-24222060 | None:intergenic | 35.0% | |
| ATGAGAATAGTTATAGCCAC+AGG | + | chr2_4:24222090-24222109 | Msa0322030:intron | 35.0% | |
| CATGTGTTAGAAGACTATAG+TGG | - | chr2_4:24222261-24222280 | None:intergenic | 35.0% | |
| TAGTCTTCTAACACATGAAG+GGG | + | chr2_4:24222264-24222283 | Msa0322030:intron | 35.0% | |
| TCATTGAGATTAACCGTTCT+TGG | - | chr2_4:24222938-24222957 | None:intergenic | 35.0% | |
| GAACGGTTAATCTCAATGAA+AGG | + | chr2_4:24222939-24222958 | Msa0322030:CDS | 35.0% | |
| AGGAAACAAAAATAGTGCAC+CGG | + | chr2_4:24222959-24222978 | Msa0322030:CDS | 35.0% | |
| AAATAGTGCACCGGATTATT+TGG | + | chr2_4:24222968-24222987 | Msa0322030:CDS | 35.0% | |
| ACCATTCCTTCCAAATAATC+CGG | - | chr2_4:24222981-24223000 | None:intergenic | 35.0% | |
| !! | GGAAAGTATTCTATGATGGT+CGG | - | chr2_4:24223057-24223076 | None:intergenic | 35.0% |
| !! | CAAGGGAAAGTATTCTATGA+TGG | - | chr2_4:24223061-24223080 | None:intergenic | 35.0% |
| TTCCCTTGTAACTCAACATA+CGG | + | chr2_4:24223073-24223092 | Msa0322030:CDS | 35.0% | |
| !! | GAAATTCAAGTTTTGCTCCA+AGG | + | chr2_4:24223470-24223489 | Msa0322030:CDS | 35.0% |
| TTCTTGAATAGAGTCAGAAG+TGG | + | chr2_4:24223545-24223564 | Msa0322030:CDS | 35.0% | |
| AGTTGAAGCTTCAATCACAA+GGG | + | chr2_4:24223570-24223589 | Msa0322030:CDS | 35.0% | |
| AACATATTAAGCCATGGATG+AGG | - | chr2_4:24223608-24223627 | None:intergenic | 35.0% | |
| CAAAAACGTAACATTACCAC+AGG | + | chr2_4:24223683-24223702 | Msa0322030:CDS | 35.0% | |
| TGTAAAATTAGTCACACCGT+CGG | + | chr2_4:24223935-24223954 | Msa0322030:intron | 35.0% | |
| AAGATATCATCCTCATCATC+TGG | - | chr2_4:24224253-24224272 | None:intergenic | 35.0% | |
| GATGATATCTTCTATGCTGT+TGG | + | chr2_4:24224262-24224281 | Msa0322030:CDS | 35.0% | |
| ! | TTGGATTTTTGCACTCAAGT+GGG | + | chr2_4:24224281-24224300 | Msa0322030:CDS | 35.0% |
| ! | ACTCAAGTGGGTTTGATAAT+TGG | + | chr2_4:24224293-24224312 | Msa0322030:CDS | 35.0% |
| TTGTTGAAGATTCTTTGTCC+AGG | - | chr2_4:24224499-24224518 | None:intergenic | 35.0% | |
| !! | AGAGAAAGGAGTGTTTGGTT+TGG | - | chr2_4:24219511-24219530 | None:intergenic | 40.0% |
| ! | CCTACGGTTGATATTAAACG+TGG | - | chr2_4:24219628-24219647 | None:intergenic | 40.0% |
| CCACGTTTAATATCAACCGT+AGG | + | chr2_4:24219625-24219644 | Msa0322030:CDS | 40.0% | |
| ! | GAAGCTAGTTCAATGGCTTT+TGG | - | chr2_4:24219736-24219755 | None:intergenic | 40.0% |
| ! | ACTATGTCGTTTACCGTTGA+TGG | - | chr2_4:24219808-24219827 | None:intergenic | 40.0% |
| CCTCTTGCAGCTATAAGAAA+AGG | - | chr2_4:24219865-24219884 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTATAGCTGCAAG+AGG | + | chr2_4:24219862-24219881 | Msa0322030:CDS | 40.0% |
| !! | GGTGTTGTTGTTGACATGAA+AGG | + | chr2_4:24219925-24219944 | Msa0322030:CDS | 40.0% |
| !! | GTTTTTGAGGATCCTAAGGT+TGG | + | chr2_4:24220003-24220022 | Msa0322030:CDS | 40.0% |
| GGATACTATGTTGATGTTGG+AGG | + | chr2_4:24220030-24220049 | Msa0322030:CDS | 40.0% | |
| CTCTCTAATGCTGGTATTAG+TGG | + | chr2_4:24220150-24220169 | Msa0322030:CDS | 40.0% | |
| AGTGGACAAACCTTTCGTTA+TGG | + | chr2_4:24220168-24220187 | Msa0322030:CDS | 40.0% | |
| !! | CACTTCGATAGCTTGCTATT+GGG | + | chr2_4:24220453-24220472 | Msa0322030:intron | 40.0% |
| GTTCTGCAACCTTTCATAGA+AGG | - | chr2_4:24220680-24220699 | None:intergenic | 40.0% | |
| TTGGAAAGCCAAAATGCACA+TGG | - | chr2_4:24220936-24220955 | None:intergenic | 40.0% | |
| CTCCCTTAACAACCACAAAT+TGG | - | chr2_4:24221172-24221191 | None:intergenic | 40.0% | |
| AGTTAGCAAGTGATTTCCAC+AGG | + | chr2_4:24221212-24221231 | Msa0322030:intron | 40.0% | |
| GTTAGCAAGTGATTTCCACA+GGG | + | chr2_4:24221213-24221232 | Msa0322030:intron | 40.0% | |
| ACTATGTCGACAATGTGAAC+TGG | - | chr2_4:24221276-24221295 | None:intergenic | 40.0% | |
| ! | TGAGTTGTTAAGCCTTTTGG+GGG | - | chr2_4:24221658-24221677 | None:intergenic | 40.0% |
| CTTGGAGGATTAGGACAATT+TGG | + | chr2_4:24221799-24221818 | Msa0322030:CDS | 40.0% | |
| ! | AAAAGTGTACGTACCCTCTT+TGG | - | chr2_4:24221862-24221881 | None:intergenic | 40.0% |
| GGAAGAAGAAGTTAGCTACA+AGG | - | chr2_4:24221915-24221934 | None:intergenic | 40.0% | |
| GTCATTGTACACTGTGTTAG+TGG | + | chr2_4:24222040-24222059 | Msa0322030:intron | 40.0% | |
| TAGGAATCGACATATACCTG+TGG | - | chr2_4:24222109-24222128 | None:intergenic | 40.0% | |
| CTCAAAAACCTTACGCTCTA+CGG | + | chr2_4:24222487-24222506 | Msa0322030:intron | 40.0% | |
| AATAATGACCGTAGAGCGTA+AGG | - | chr2_4:24222498-24222517 | None:intergenic | 40.0% | |
| ! | GATTAACCGTTCTTGGTCTT+TGG | - | chr2_4:24222931-24222950 | None:intergenic | 40.0% |
| ACCGGATTATTTGGAAGGAA+TGG | + | chr2_4:24222977-24222996 | Msa0322030:CDS | 40.0% | |
| TTCTATGATGGTCGGCTAAA+GGG | - | chr2_4:24223049-24223068 | None:intergenic | 40.0% | |
| ATTCTATGATGGTCGGCTAA+AGG | - | chr2_4:24223050-24223069 | None:intergenic | 40.0% | |
| GACCGTATGTTGAGTTACAA+GGG | - | chr2_4:24223078-24223097 | None:intergenic | 40.0% | |
| TGGCAAATTCCAAGCAATAG+AGG | - | chr2_4:24223100-24223119 | None:intergenic | 40.0% | |
| GAGTTGAAGCTTCAATCACA+AGG | + | chr2_4:24223569-24223588 | Msa0322030:CDS | 40.0% | |
| TTCATGGGATAAACCAAGAC+AGG | - | chr2_4:24223710-24223729 | None:intergenic | 40.0% | |
| AATGAATTGAGATCGACCGA+CGG | - | chr2_4:24223954-24223973 | None:intergenic | 40.0% | |
| AGCAACAATACCAGATGATG+AGG | + | chr2_4:24224240-24224259 | Msa0322030:CDS | 40.0% | |
| ! | GTTGGATTTTTGCACTCAAG+TGG | + | chr2_4:24224280-24224299 | Msa0322030:CDS | 40.0% |
| ! | GAAGAGTGGACAAACCATTT+TGG | + | chr2_4:24224409-24224428 | Msa0322030:CDS | 40.0% |
| CCAGGTGATAGAATCATTCT+TGG | - | chr2_4:24224481-24224500 | None:intergenic | 40.0% | |
| CCAAGAATGATTCTATCACC+TGG | + | chr2_4:24224478-24224497 | Msa0322030:CDS | 40.0% | |
| ! | CCATTGCTCGGTTTTACCTA+CGG | - | chr2_4:24219644-24219663 | None:intergenic | 45.0% |
| AGCAGTGTTCCAACCATCAA+CGG | + | chr2_4:24219792-24219811 | Msa0322030:CDS | 45.0% | |
| !! | TGTCGTTTACCGTTGATGGT+TGG | - | chr2_4:24219804-24219823 | None:intergenic | 45.0% |
| CTTATAGCTGCAAGAGGACA+AGG | + | chr2_4:24219868-24219887 | Msa0322030:CDS | 45.0% | |
| GAGGATCCTAAGGTTGGATT+TGG | + | chr2_4:24220009-24220028 | Msa0322030:CDS | 45.0% | |
| ATGTTGGAGGGGAACAACTA+TGG | + | chr2_4:24220043-24220062 | Msa0322030:CDS | 45.0% | |
| ! | ATGGACTTGCACCTGTTTCT+TGG | + | chr2_4:24220094-24220113 | Msa0322030:CDS | 45.0% |
| CCAATAGCAAGCTATCGAAG+TGG | - | chr2_4:24220455-24220474 | None:intergenic | 45.0% | |
| !! | CCACTTCGATAGCTTGCTAT+TGG | + | chr2_4:24220452-24220471 | Msa0322030:intron | 45.0% |
| CTCTACGCACCTTCTATGAA+AGG | + | chr2_4:24220668-24220687 | Msa0322030:intron | 45.0% | |
| AATCATATGCTCGAAAGCCG+AGG | + | chr2_4:24220708-24220727 | Msa0322030:intron | 45.0% | |
| AAAACAAGAAAGGGACCCTG+TGG | - | chr2_4:24221231-24221250 | None:intergenic | 45.0% | |
| ! | GAGTTGTTAAGCCTTTTGGG+GGG | - | chr2_4:24221657-24221676 | None:intergenic | 45.0% |
| CATGGAGTTCTTGGAGGATT+AGG | + | chr2_4:24221790-24221809 | Msa0322030:CDS | 45.0% | |
| ! | GTGTACAATGACGGTGCTTT+TGG | - | chr2_4:24222032-24222051 | None:intergenic | 45.0% |
| AGTGCACCGGATTATTTGGA+AGG | + | chr2_4:24222972-24222991 | Msa0322030:CDS | 45.0% | |
| GGACCGTATGTTGAGTTACA+AGG | - | chr2_4:24223079-24223098 | None:intergenic | 45.0% | |
| ACATACGGTCCTCTATTGCT+TGG | + | chr2_4:24223088-24223107 | Msa0322030:CDS | 45.0% | |
| CAGGGATATAGTTCAGTCCT+TGG | - | chr2_4:24223490-24223509 | None:intergenic | 45.0% | |
| CAAGGACTGAACTATATCCC+TGG | + | chr2_4:24223488-24223507 | Msa0322030:CDS | 45.0% | |
| AGCTTCAATCACAAGGGCTA+TGG | + | chr2_4:24223576-24223595 | Msa0322030:CDS | 45.0% | |
| GCTTCAATCACAAGGGCTAT+GGG | + | chr2_4:24223577-24223596 | Msa0322030:CDS | 45.0% | |
| TATGGGATGTTCCTCATCCA+TGG | + | chr2_4:24223594-24223613 | Msa0322030:CDS | 45.0% | |
| ATAAACCAAGACAGGTCCTG+TGG | - | chr2_4:24223702-24223721 | None:intergenic | 45.0% | |
| !!! | AATTTAAAATATTATAGTTA+AGG | - | chr2_4:24221391-24221410 | None:intergenic | 5.0% |
| !!! | TTATTATAATTTTTAAATAG+TGG | - | chr2_4:24223898-24223917 | None:intergenic | 5.0% |
| !!! | ATTTTTACAAATTTATATAA+TGG | - | chr2_4:24224163-24224182 | None:intergenic | 5.0% |
| CCGTAGGTAAAACCGAGCAA+TGG | + | chr2_4:24219641-24219660 | Msa0322030:CDS | 50.0% | |
| CTGCTGGGAATTCATGTACG+AGG | - | chr2_4:24219774-24219793 | None:intergenic | 50.0% | |
| ATGGTTGGAACACTGCTGCT+GGG | - | chr2_4:24219789-24219808 | None:intergenic | 50.0% | |
| TTCCACACGAGGACAAGCTA+TGG | + | chr2_4:24219894-24219913 | Msa0322030:CDS | 50.0% | |
| CAACTACTACACCCCCCAAA+AGG | + | chr2_4:24221643-24221662 | Msa0322030:intron | 50.0% | |
| TCTTGAGCCAGCACCAAAGA+GGG | + | chr2_4:24221846-24221865 | Msa0322030:CDS | 50.0% | |
| CATTACCACAGGACCTGTCT+TGG | + | chr2_4:24223694-24223713 | Msa0322030:CDS | 50.0% | |
| TCTTCCTGTGTGCTGTAGTG+GGG | - | chr2_4:24224394-24224413 | None:intergenic | 50.0% | |
| CTCTTCCTGTGTGCTGTAGT+GGG | - | chr2_4:24224395-24224414 | None:intergenic | 50.0% | |
| ACTCTTCCTGTGTGCTGTAG+TGG | - | chr2_4:24224396-24224415 | None:intergenic | 50.0% | |
| ACTACAGCACACAGGAAGAG+TGG | + | chr2_4:24224395-24224414 | Msa0322030:CDS | 50.0% | |
| GATGGTTGGAACACTGCTGC+TGG | - | chr2_4:24219790-24219809 | None:intergenic | 55.0% | |
| GGACAAGGTCATTCCACACG+AGG | + | chr2_4:24219883-24219902 | Msa0322030:CDS | 55.0% | |
| ! | TGCCATAGCTTGTCCTCGTG+TGG | - | chr2_4:24219899-24219918 | None:intergenic | 55.0% |
| GGACAAGCTATGGCACGTGA+TGG | + | chr2_4:24219904-24219923 | Msa0322030:CDS | 55.0% | |
| GGAGGGACACTCTCTAATGC+TGG | + | chr2_4:24220141-24220160 | Msa0322030:CDS | 55.0% | |
| CTCTTGAGCCAGCACCAAAG+AGG | + | chr2_4:24221845-24221864 | Msa0322030:CDS | 55.0% | |
| ! | GTACGTACCCTCTTTGGTGC+TGG | - | chr2_4:24221856-24221875 | None:intergenic | 55.0% |
| TCTTCCCCACTACAGCACAC+AGG | + | chr2_4:24224387-24224406 | Msa0322030:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 24219506 | 24224525 | 24219506 | ID=Msa0322030;Name=Msa0322030 |
| chr2_4 | mRNA | 24219506 | 24224525 | 24219506 | ID=Msa0322030-mRNA-1;Parent=Msa0322030;Name=Msa0322030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|0.8|1|1|1|5|0|544 |
| chr2_4 | exon | 24219506 | 24220231 | 24219506 | ID=Msa0322030-mRNA-1:exon:8695;Parent=Msa0322030-mRNA-1 |
| chr2_4 | exon | 24221740 | 24221867 | 24221740 | ID=Msa0322030-mRNA-1:exon:8696;Parent=Msa0322030-mRNA-1 |
| chr2_4 | exon | 24222885 | 24223157 | 24222885 | ID=Msa0322030-mRNA-1:exon:8697;Parent=Msa0322030-mRNA-1 |
| chr2_4 | exon | 24223470 | 24223738 | 24223470 | ID=Msa0322030-mRNA-1:exon:8698;Parent=Msa0322030-mRNA-1 |
| chr2_4 | exon | 24224222 | 24224525 | 24224222 | ID=Msa0322030-mRNA-1:exon:8699;Parent=Msa0322030-mRNA-1 |
| chr2_4 | five_prime_UTR | 24219506 | 24219570 | 24219506 | ID=Msa0322030-mRNA-1:five_prime_utr;Parent=Msa0322030-mRNA-1 |
| chr2_4 | CDS | 24219571 | 24220231 | 24219571 | ID=Msa0322030-mRNA-1:cds;Parent=Msa0322030-mRNA-1 |
| chr2_4 | CDS | 24221740 | 24221867 | 24221740 | ID=Msa0322030-mRNA-1:cds;Parent=Msa0322030-mRNA-1 |
| chr2_4 | CDS | 24222885 | 24223157 | 24222885 | ID=Msa0322030-mRNA-1:cds;Parent=Msa0322030-mRNA-1 |
| chr2_4 | CDS | 24223470 | 24223738 | 24223470 | ID=Msa0322030-mRNA-1:cds;Parent=Msa0322030-mRNA-1 |
| chr2_4 | CDS | 24224222 | 24224525 | 24224222 | ID=Msa0322030-mRNA-1:cds;Parent=Msa0322030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
