Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175730 | XP_003591690.1 | 97.409 | 849 | 20 | 2 | 1 | 847 | 1 | 849 | 0.0 | 1700 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175730 | sp|Q9SVD0|SMXL3_ARATH | 46.118 | 863 | 394 | 25 | 1 | 845 | 1 | 810 | 0.0 | 636 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175730 | G7I415 | 97.409 | 849 | 20 | 2 | 1 | 847 | 1 | 849 | 0.0 | 1700 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000050 | Msa0175730 | 0.860884 | 1.513082e-63 | -8.615850e-47 |
Msa0001940 | Msa0175730 | 0.802260 | 6.105168e-49 | -8.615850e-47 |
Msa0002580 | Msa0175730 | 0.859002 | 5.589768e-63 | -8.615850e-47 |
Msa0005890 | Msa0175730 | 0.841453 | 4.708323e-58 | -8.615850e-47 |
Msa0014990 | Msa0175730 | 0.802004 | 6.891973e-49 | -8.615850e-47 |
Msa0017950 | Msa0175730 | 0.803709 | 3.062622e-49 | -8.615850e-47 |
Msa0018160 | Msa0175730 | 0.810295 | 1.237711e-50 | -8.615850e-47 |
Msa0024550 | Msa0175730 | 0.828015 | 1.137048e-54 | -8.615850e-47 |
Msa0034810 | Msa0175730 | 0.882406 | 1.069968e-70 | -8.615850e-47 |
Msa0036870 | Msa0175730 | 0.826003 | 3.443829e-54 | -8.615850e-47 |
Msa0042610 | Msa0175730 | 0.811576 | 6.532323e-51 | -8.615850e-47 |
Msa0054690 | Msa0175730 | 0.801764 | 7.718216e-49 | -8.615850e-47 |
Msa0061380 | Msa0175730 | 0.801002 | 1.105691e-48 | -8.615850e-47 |
Msa0071860 | Msa0175730 | 0.810272 | 1.251953e-50 | -8.615850e-47 |
Msa0071880 | Msa0175730 | 0.822673 | 2.088991e-53 | -8.615850e-47 |
Msa0080090 | Msa0175730 | 0.815576 | 8.613824e-52 | -8.615850e-47 |
Msa0081390 | Msa0175730 | 0.811734 | 6.036778e-51 | -8.615850e-47 |
Msa0081450 | Msa0175730 | 0.812353 | 4.424227e-51 | -8.615850e-47 |
Msa0081520 | Msa0175730 | 0.814599 | 1.419067e-51 | -8.615850e-47 |
Msa0120400 | Msa0175730 | 0.821525 | 3.854039e-53 | -8.615850e-47 |
Msa0129940 | Msa0175730 | 0.900858 | 4.805502e-78 | -8.615850e-47 |
Msa0164330 | Msa0175730 | 0.824587 | 7.444838e-54 | -8.615850e-47 |
Msa0172650 | Msa0175730 | 0.803489 | 3.402317e-49 | -8.615850e-47 |
Msa0173690 | Msa0175730 | 0.811673 | 6.224459e-51 | -8.615850e-47 |
Msa0174450 | Msa0175730 | 0.816941 | 4.264547e-52 | -8.615850e-47 |
Msa0175730 | Msa0178560 | 0.800017 | 1.755839e-48 | -8.615850e-47 |
Msa0175730 | Msa0186920 | 0.810190 | 1.303461e-50 | -8.615850e-47 |
Msa0175730 | Msa0191020 | 0.836703 | 8.009624e-57 | -8.615850e-47 |
Msa0175730 | Msa0194820 | 0.806602 | 7.596633e-50 | -8.615850e-47 |
Msa0175730 | Msa0194840 | 0.812941 | 3.290385e-51 | -8.615850e-47 |
Msa0175730 | Msa0211030 | 0.842129 | 3.122094e-58 | -8.615850e-47 |
Msa0175730 | Msa0211150 | 0.801997 | 6.914438e-49 | -8.615850e-47 |
Msa0175730 | Msa0212990 | 0.809557 | 1.784000e-50 | -8.615850e-47 |
Msa0175730 | Msa0221000 | 0.809708 | 1.656033e-50 | -8.615850e-47 |
Msa0175730 | Msa0223080 | 0.805108 | 1.565544e-49 | -8.615850e-47 |
Msa0175730 | Msa0224780 | 0.814905 | 1.214070e-51 | -8.615850e-47 |
Msa0175730 | Msa0225100 | 0.845494 | 3.922299e-59 | -8.615850e-47 |
Msa0175730 | Msa0225110 | 0.808686 | 2.741037e-50 | -8.615850e-47 |
Msa0175730 | Msa0225860 | 0.833738 | 4.488217e-56 | -8.615850e-47 |
Msa0175730 | Msa0230800 | 0.806062 | 9.871682e-50 | -8.615850e-47 |
Msa0175730 | Msa0233320 | 0.837913 | 3.925171e-57 | -8.615850e-47 |
Msa0175730 | Msa0244640 | 0.858415 | 8.368264e-63 | -8.615850e-47 |
Msa0175730 | Msa0245280 | 0.813471 | 2.517461e-51 | -8.615850e-47 |
Msa0175730 | Msa0254790 | 0.801323 | 9.504733e-49 | -8.615850e-47 |
Msa0175730 | Msa0258310 | 0.810265 | 1.255831e-50 | -8.615850e-47 |
Msa0175730 | Msa0261340 | 0.818340 | 2.062658e-52 | -8.615850e-47 |
Msa0175730 | Msa0265850 | 0.823682 | 1.214789e-53 | -8.615850e-47 |
Msa0175730 | Msa0266180 | 0.854876 | 9.187946e-62 | -8.615850e-47 |
Msa0175730 | Msa0266200 | 0.807245 | 5.554040e-50 | -8.615850e-47 |
Msa0175730 | Msa0267920 | 0.802977 | 4.343076e-49 | -8.615850e-47 |
Msa0175730 | Msa0283330 | 0.861683 | 8.636502e-64 | -8.615850e-47 |
Msa0175730 | Msa0287740 | 0.845929 | 2.989318e-59 | -8.615850e-47 |
Msa0175730 | Msa0287780 | 0.812261 | 4.632999e-51 | -8.615850e-47 |
Msa0175730 | Msa0292930 | 0.816061 | 6.712881e-52 | -8.615850e-47 |
Msa0175730 | Msa0297790 | 0.802418 | 5.662672e-49 | -8.615850e-47 |
Msa0175730 | Msa0298470 | 0.817992 | 2.473416e-52 | -8.615850e-47 |
Msa0175730 | Msa0300270 | 0.837510 | 4.980240e-57 | -8.615850e-47 |
Msa0175730 | Msa0300320 | 0.821361 | 4.205568e-53 | -8.615850e-47 |
Msa0175730 | Msa0302160 | 0.800595 | 1.339058e-48 | -8.615850e-47 |
Msa0175730 | Msa0321620 | 0.838937 | 2.136932e-57 | -8.615850e-47 |
Msa0175730 | Msa0322030 | 0.800805 | 1.213082e-48 | -8.615850e-47 |
Msa0175730 | Msa0322110 | 0.814825 | 1.264835e-51 | -8.615850e-47 |
Msa0175730 | Msa0330340 | 0.811505 | 6.771180e-51 | -8.615850e-47 |
Msa0175730 | Msa0331000 | 0.800934 | 1.141407e-48 | -8.615850e-47 |
Msa0175730 | Msa0337700 | 0.842845 | 2.016616e-58 | -8.615850e-47 |
Msa0175730 | Msa0339490 | 0.802171 | 6.365640e-49 | -8.615850e-47 |
Msa0175730 | Msa0340500 | 0.800125 | 1.668578e-48 | -8.615850e-47 |
Msa0175730 | Msa0357320 | 0.805054 | 1.606717e-49 | -8.615850e-47 |
Msa0175730 | Msa0357350 | 0.802313 | 5.952531e-49 | -8.615850e-47 |
Msa0175730 | Msa0359020 | 0.811547 | 6.628257e-51 | -8.615850e-47 |
Msa0175730 | Msa0360210 | 0.823321 | 1.475210e-53 | -8.615850e-47 |
Msa0175730 | Msa0363200 | 0.818689 | 1.719746e-52 | -8.615850e-47 |
Msa0175730 | Msa0367870 | 0.810143 | 1.334548e-50 | -8.615850e-47 |
Msa0175730 | Msa0371170 | 0.817542 | 3.124230e-52 | -8.615850e-47 |
Msa0175730 | Msa0376630 | 0.820026 | 8.525603e-53 | -8.615850e-47 |
Msa0175730 | Msa0378720 | 0.828692 | 7.804277e-55 | -8.615850e-47 |
Msa0175730 | Msa0403970 | 0.817117 | 3.895170e-52 | -8.615850e-47 |
Msa0175730 | Msa0405130 | 0.810391 | 1.179773e-50 | -8.615850e-47 |
Msa0175730 | Msa0405680 | 0.808414 | 3.133939e-50 | -8.615850e-47 |
Msa0175730 | Msa0405690 | 0.805652 | 1.203804e-49 | -8.615850e-47 |
Msa0175730 | Msa0406770 | 0.817300 | 3.542992e-52 | -8.615850e-47 |
Msa0175730 | Msa0418970 | 0.805491 | 1.301341e-49 | -8.615850e-47 |
Msa0175730 | Msa0425170 | 0.838137 | 3.437074e-57 | -8.615850e-47 |
Msa0175730 | Msa0428370 | 0.802067 | 6.690072e-49 | -8.615850e-47 |
Msa0175730 | Msa0428920 | 0.810563 | 1.083095e-50 | -8.615850e-47 |
Msa0175730 | Msa0436910 | 0.857746 | 1.323150e-62 | -8.615850e-47 |
Msa0175730 | Msa0450720 | 0.808594 | 2.868221e-50 | -8.615850e-47 |
Msa0175730 | Msa0464680 | 0.855442 | 6.290517e-62 | -8.615850e-47 |
Msa0175730 | Msa0465400 | 0.835875 | 1.300321e-56 | -8.615850e-47 |
Msa0175730 | Msa0471670 | 0.815402 | 9.417946e-52 | -8.615850e-47 |
Msa0175730 | Msa0474730 | 0.837616 | 4.680671e-57 | -8.615850e-47 |
Msa0175730 | Msa0479170 | 0.800673 | 1.290618e-48 | -8.615850e-47 |
Msa0175730 | Msa0481530 | 0.812153 | 4.893378e-51 | -8.615850e-47 |
Msa0175730 | Msa0484650 | 0.831287 | 1.818219e-55 | -8.615850e-47 |
Msa0175730 | Msa0498060 | 0.829759 | 4.301203e-55 | -8.615850e-47 |
Msa0175730 | Msa0516170 | 0.802630 | 5.122312e-49 | -8.615850e-47 |
Msa0175730 | Msa0519830 | 0.806514 | 7.926455e-50 | -8.615850e-47 |
Msa0175730 | Msa0529890 | 0.822052 | 2.912044e-53 | -8.615850e-47 |
Msa0175730 | Msa0530780 | 0.801935 | 7.121401e-49 | -8.615850e-47 |
Msa0175730 | Msa0531180 | 0.828187 | 1.033591e-54 | -8.615850e-47 |
Msa0175730 | Msa0546500 | 0.804394 | 2.206090e-49 | -8.615850e-47 |
Msa0175730 | Msa0571130 | 0.815657 | 8.263362e-52 | -8.615850e-47 |
Msa0175730 | Msa0580370 | 0.823571 | 1.289268e-53 | -8.615850e-47 |
Msa0175730 | Msa0581470 | 0.804779 | 1.833785e-49 | -8.615850e-47 |
Msa0175730 | Msa0583360 | -0.820299 | 7.382171e-53 | -8.615850e-47 |
Msa0175730 | Msa0585560 | 0.825420 | 4.732762e-54 | -8.615850e-47 |
Msa0175730 | Msa0586750 | 0.804834 | 1.785973e-49 | -8.615850e-47 |
Msa0175730 | Msa0600930 | 0.808427 | 3.114516e-50 | -8.615850e-47 |
Msa0175730 | Msa0611210 | 0.835644 | 1.488302e-56 | -8.615850e-47 |
Msa0175730 | Msa0616070 | 0.811600 | 6.457000e-51 | -8.615850e-47 |
Msa0175730 | Msa0625720 | 0.823134 | 1.631483e-53 | -8.615850e-47 |
Msa0175730 | Msa0626450 | 0.809501 | 1.833801e-50 | -8.615850e-47 |
Msa0175730 | Msa0626490 | 0.804301 | 2.306510e-49 | -8.615850e-47 |
Msa0175730 | Msa0633700 | 0.803613 | 3.206295e-49 | -8.615850e-47 |
Msa0175730 | Msa0651550 | 0.816077 | 6.661114e-52 | -8.615850e-47 |
Msa0175730 | Msa0662240 | 0.808816 | 2.571555e-50 | -8.615850e-47 |
Msa0175730 | Msa0663390 | 0.809513 | 1.823504e-50 | -8.615850e-47 |
Msa0175730 | Msa0664600 | 0.806798 | 6.904543e-50 | -8.615850e-47 |
Msa0175730 | Msa0717890 | 0.834578 | 2.764607e-56 | -8.615850e-47 |
Msa0175730 | Msa0727640 | 0.800504 | 1.397142e-48 | -8.615850e-47 |
Msa0175730 | Msa0730430 | 0.801452 | 8.944048e-49 | -8.615850e-47 |
Msa0175730 | Msa0733390 | 0.801184 | 1.014844e-48 | -8.615850e-47 |
Msa0175730 | Msa0741220 | 0.830099 | 3.553651e-55 | -8.615850e-47 |
Msa0175730 | Msa0741650 | 0.806289 | 8.841784e-50 | -8.615850e-47 |
Msa0175730 | Msa0767300 | 0.800523 | 1.385173e-48 | -8.615850e-47 |
Msa0175730 | Msa0769180 | 0.800390 | 1.473927e-48 | -8.615850e-47 |
Msa0175730 | Msa0778590 | 0.811302 | 7.492901e-51 | -8.615850e-47 |
Msa0175730 | Msa0780270 | 0.813448 | 2.546871e-51 | -8.615850e-47 |
Msa0175730 | Msa0795870 | 0.827571 | 1.453935e-54 | -8.615850e-47 |
Msa0175730 | Msa0828560 | 0.825705 | 4.051491e-54 | -8.615850e-47 |
Msa0175730 | Msa0829300 | 0.877298 | 7.031092e-69 | -8.615850e-47 |
Msa0175730 | Msa0829330 | 0.875567 | 2.784163e-68 | -8.615850e-47 |
Msa0175730 | Msa0833650 | 0.833833 | 4.248346e-56 | -8.615850e-47 |
Msa0175730 | Msa0861600 | 0.802916 | 4.471161e-49 | -8.615850e-47 |
Msa0175730 | Msa0861850 | 0.818777 | 1.642385e-52 | -8.615850e-47 |
Msa0175730 | Msa0875290 | 0.807377 | 5.207030e-50 | -8.615850e-47 |
Msa0175730 | Msa0876550 | 0.814698 | 1.349725e-51 | -8.615850e-47 |
Msa0175730 | Msa0896410 | 0.810895 | 9.179049e-51 | -8.615850e-47 |
Msa0175730 | Msa0896440 | 0.805326 | 1.409142e-49 | -8.615850e-47 |
Msa0175730 | Msa0898750 | 0.812178 | 4.831592e-51 | -8.615850e-47 |
Msa0175730 | Msa0902940 | 0.820204 | 7.760107e-53 | -8.615850e-47 |
Msa0175730 | Msa0923030 | 0.804076 | 2.570109e-49 | -8.615850e-47 |
Msa0175730 | Msa0945550 | 0.806505 | 7.963891e-50 | -8.615850e-47 |
Msa0175730 | Msa0961610 | 0.800355 | 1.498201e-48 | -8.615850e-47 |
Msa0175730 | Msa0964310 | 0.813841 | 2.086699e-51 | -8.615850e-47 |
Msa0175730 | Msa0964840 | 0.802910 | 4.482801e-49 | -8.615850e-47 |
Msa0175730 | Msa0967380 | 0.814484 | 1.505136e-51 | -8.615850e-47 |
Msa0175730 | Msa0967870 | 0.840921 | 6.496984e-58 | -8.615850e-47 |
Msa0175730 | Msa1004800 | 0.807688 | 4.473444e-50 | -8.615850e-47 |
Msa0175730 | Msa1004840 | 0.814018 | 1.907433e-51 | -8.615850e-47 |
Msa0175730 | Msa1012080 | 0.815300 | 9.920151e-52 | -8.615850e-47 |
Msa0175730 | Msa1019000 | 0.805173 | 1.516675e-49 | -8.615850e-47 |
Msa0175730 | Msa1019150 | 0.800181 | 1.626031e-48 | -8.615850e-47 |
Msa0175730 | Msa1019430 | 0.832983 | 6.922691e-56 | -8.615850e-47 |
Msa0175730 | Msa1019470 | 0.826857 | 2.155004e-54 | -8.615850e-47 |
Msa0175730 | Msa1020510 | 0.804091 | 2.551203e-49 | -8.615850e-47 |
Msa0175730 | Msa1028100 | 0.803892 | 2.805727e-49 | -8.615850e-47 |
Msa0175730 | Msa1031930 | 0.810226 | 1.280757e-50 | -8.615850e-47 |
Msa0175730 | Msa1032780 | 0.809748 | 1.623179e-50 | -8.615850e-47 |
Msa0175730 | Msa1043370 | 0.807685 | 4.480597e-50 | -8.615850e-47 |
Msa0175730 | Msa1044680 | 0.807166 | 5.771649e-50 | -8.615850e-47 |
Msa0175730 | Msa1050340 | 0.815667 | 8.222392e-52 | -8.615850e-47 |
Msa0175730 | Msa1053570 | 0.816456 | 5.479559e-52 | -8.615850e-47 |
Msa0175730 | Msa1096960 | 0.802630 | 5.122312e-49 | -8.615850e-47 |
Msa0175730 | Msa1101090 | 0.812475 | 4.160564e-51 | -8.615850e-47 |
Msa0175730 | Msa1106510 | 0.804432 | 2.166658e-49 | -8.615850e-47 |
Msa0175730 | Msa1113800 | 0.806662 | 7.376289e-50 | -8.615850e-47 |
Msa0175730 | Msa1132840 | 0.824995 | 5.964418e-54 | -8.615850e-47 |
Msa0175730 | Msa1142020 | 0.802834 | 4.648014e-49 | -8.615850e-47 |
Msa0175730 | Msa1155170 | -0.838525 | 2.731107e-57 | -8.615850e-47 |
Msa0175730 | Msa1160500 | 0.811424 | 7.050189e-51 | -8.615850e-47 |
Msa0175730 | Msa1161580 | 0.801442 | 8.986803e-49 | -8.615850e-47 |
Msa0175730 | Msa1189070 | 0.813856 | 2.070580e-51 | -8.615850e-47 |
Msa0175730 | Msa1199570 | 0.804461 | 2.136631e-49 | -8.615850e-47 |
Msa0175730 | Msa1205280 | 0.845203 | 4.701235e-59 | -8.615850e-47 |
Msa0175730 | Msa1208430 | 0.805267 | 1.449803e-49 | -8.615850e-47 |
Msa0175730 | Msa1225860 | -0.830007 | 3.742865e-55 | -8.615850e-47 |
Msa0175730 | Msa1228200 | 0.850244 | 1.924872e-60 | -8.615850e-47 |
Msa0175730 | Msa1238820 | 0.824124 | 9.567524e-54 | -8.615850e-47 |
Msa0175730 | Msa1243490 | 0.823704 | 1.200220e-53 | -8.615850e-47 |
Msa0175730 | Msa1265650 | 0.860039 | 2.726000e-63 | -8.615850e-47 |
Msa0175730 | Msa1267770 | 0.811610 | 6.424436e-51 | -8.615850e-47 |
Msa0175730 | Msa1276660 | 0.807598 | 4.674376e-50 | -8.615850e-47 |
Msa0175730 | Msa1287440 | 0.800177 | 1.628729e-48 | -8.615850e-47 |
Msa0175730 | Msa1297230 | 0.839436 | 1.586386e-57 | -8.615850e-47 |
Msa0175730 | Msa1298370 | 0.803709 | 3.062126e-49 | -8.615850e-47 |
Msa0175730 | Msa1303560 | 0.850869 | 1.284555e-60 | -8.615850e-47 |
Msa0175730 | Msa1303650 | 0.843723 | 1.175770e-58 | -8.615850e-47 |
Msa0175730 | Msa1307560 | 0.802351 | 5.845897e-49 | -8.615850e-47 |
Msa0175730 | Msa1314650 | 0.821150 | 4.704736e-53 | -8.615850e-47 |
Msa0175730 | Msa1324080 | 0.804436 | 2.161832e-49 | -8.615850e-47 |
Msa0175730 | Msa1328710 | 0.806940 | 6.444222e-50 | -8.615850e-47 |
Msa0175730 | Msa1330420 | 0.814180 | 1.757061e-51 | -8.615850e-47 |
Msa0175730 | Msa1333480 | 0.826508 | 2.609952e-54 | -8.615850e-47 |
Msa0175730 | Msa1343430 | 0.812984 | 3.219223e-51 | -8.615850e-47 |
Msa0175730 | Msa1356830 | 0.802607 | 5.178809e-49 | -8.615850e-47 |
Msa0175730 | Msa1366340 | 0.815803 | 7.667174e-52 | -8.615850e-47 |
Msa0175730 | Msa1372040 | 0.807555 | 4.774374e-50 | -8.615850e-47 |
Msa0175730 | Msa1392880 | 0.821538 | 3.828966e-53 | -8.615850e-47 |
Msa0175730 | Msa1414640 | 0.808948 | 2.409209e-50 | -8.615850e-47 |
Msa0175730 | Msa1432500 | 0.810806 | 9.596883e-51 | -8.615850e-47 |
Msa0175730 | Msa1433810 | 0.851424 | 8.958825e-61 | -8.615850e-47 |
Msa0175730 | Msa1444210 | 0.802012 | 6.864429e-49 | -8.615850e-47 |
Msa0175730 | Msa1450100 | 0.827475 | 1.532602e-54 | -8.615850e-47 |
Msa0175730 | Msa1454140 | 0.805983 | 1.025535e-49 | -8.615850e-47 |
Msa0175730 | Msa1466540 | 0.800541 | 1.373038e-48 | -8.615850e-47 |
Msa0175730 | Msa1466920 | 0.803268 | 3.779949e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175730 | MtrunA17_Chr1g0197121 | 97.409 | 849 | 20 | 2 | 1 | 847 | 1 | 849 | 0.0 | 1700 |
Msa0175730 | MtrunA17_Chr1g0177421 | 47.806 | 866 | 372 | 23 | 1 | 847 | 1 | 805 | 0.0 | 654 |
Msa0175730 | MtrunA17_Chr2g0298801 | 34.487 | 751 | 382 | 25 | 1 | 694 | 1 | 698 | 8.52e-103 | 341 |
Msa0175730 | MtrunA17_Chr4g0073021 | 30.805 | 870 | 459 | 33 | 1 | 784 | 1 | 813 | 3.77e-93 | 315 |
Msa0175730 | MtrunA17_Chr4g0071701 | 63.068 | 176 | 50 | 5 | 1 | 167 | 1 | 170 | 9.90e-54 | 200 |
Msa0175730 | MtrunA17_Chr3g0105051 | 26.545 | 874 | 505 | 31 | 11 | 787 | 10 | 843 | 7.00e-49 | 187 |
Msa0175730 | MtrunA17_Chr5g0430201 | 25.508 | 886 | 499 | 33 | 11 | 784 | 10 | 846 | 2.44e-38 | 154 |
Msa0175730 | MtrunA17_Chr3g0113631 | 28.571 | 413 | 226 | 15 | 11 | 393 | 10 | 383 | 2.48e-26 | 116 |
Msa0175730 | MtrunA17_Chr4g0061371 | 20.927 | 798 | 502 | 30 | 24 | 784 | 17 | 722 | 2.77e-20 | 96.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175730 | AT3G52490.1 | 46.118 | 863 | 394 | 25 | 1 | 845 | 1 | 810 | 0.0 | 636 |
Msa0175730 | AT5G57710.1 | 32.028 | 843 | 435 | 30 | 1 | 784 | 1 | 764 | 3.21e-98 | 328 |
Msa0175730 | AT5G57130.1 | 37.585 | 588 | 251 | 18 | 1 | 490 | 1 | 570 | 2.58e-90 | 308 |
Msa0175730 | AT4G29920.2 | 36.607 | 560 | 271 | 17 | 1 | 495 | 1 | 541 | 4.76e-89 | 304 |
Msa0175730 | AT4G29920.1 | 36.331 | 556 | 275 | 16 | 1 | 495 | 1 | 538 | 6.74e-89 | 303 |
Msa0175730 | AT4G30350.1 | 31.152 | 825 | 425 | 28 | 1 | 786 | 1 | 721 | 8.98e-85 | 290 |
Msa0175730 | AT2G29970.1 | 26.322 | 832 | 491 | 26 | 11 | 781 | 10 | 780 | 2.31e-55 | 207 |
Msa0175730 | AT1G07200.2 | 25.872 | 831 | 489 | 28 | 11 | 784 | 10 | 770 | 1.13e-47 | 184 |
Msa0175730 | AT2G40130.1 | 31.990 | 397 | 221 | 14 | 11 | 382 | 10 | 382 | 7.55e-36 | 146 |
Msa0175730 | AT2G40130.2 | 31.990 | 397 | 221 | 14 | 11 | 382 | 10 | 382 | 8.67e-36 | 146 |
Msa0175730 | AT1G74310.1 | 25.806 | 310 | 195 | 11 | 11 | 313 | 4 | 285 | 6.34e-16 | 83.2 |
Msa0175730 | AT1G74310.2 | 25.806 | 310 | 195 | 11 | 11 | 313 | 4 | 285 | 6.59e-16 | 82.8 |
Find 141 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCTATATATGTTAAATT+TGG | 0.080267 | 1_4:-61847708 | Msa0175730:three_prime_UTR |
ACCCTTCCCTAGAAACTATT+TGG | 0.153510 | 1_4:-61849603 | Msa0175730:CDS |
AGAGGGGTTATTCTTTATTT+AGG | 0.203554 | 1_4:-61849808 | Msa0175730:CDS |
CCAAATCTCACTCAAATAAT+TGG | 0.227091 | 1_4:+61847481 | None:intergenic |
TCTCGATCGTTCCGCGTCTT+TGG | 0.250193 | 1_4:+61850364 | None:intergenic |
AGGCTTAAGGCTAAGTTCTT+TGG | 0.260826 | 1_4:+61850137 | None:intergenic |
GAGTGGTAGATTATGGCTTA+TGG | 0.282735 | 1_4:-61849668 | Msa0175730:CDS |
TCCAACAAAGCCAACTAAAT+TGG | 0.291498 | 1_4:-61848705 | Msa0175730:CDS |
TCCTTCACTTTCCAATGCTT+TGG | 0.297130 | 1_4:-61850415 | Msa0175730:CDS |
TATAATAACTCACACTCTTT+TGG | 0.298041 | 1_4:+61848655 | None:intergenic |
AAGCCTTGTGAAAAGCTATA+TGG | 0.299255 | 1_4:-61849833 | Msa0175730:CDS |
CTTGTCAGGGAGGTAAATTT+TGG | 0.301446 | 1_4:+61850865 | None:intergenic |
GTTCTATATATGTTAAATTT+GGG | 0.303820 | 1_4:-61847707 | Msa0175730:three_prime_UTR |
TCACTTGAAGAAGCTGAGTT+TGG | 0.312758 | 1_4:+61848523 | None:intergenic |
GAAGCTCCCAAATAGTTTCT+AGG | 0.313524 | 1_4:+61849596 | None:intergenic |
TGAAATGGTTGTTTGAGTTT+TGG | 0.332695 | 1_4:-61849780 | Msa0175730:CDS |
TGTAACAACTTTATGACAAT+TGG | 0.336252 | 1_4:-61848217 | Msa0175730:CDS |
CTATTGTTCTGTTGAGCATA+TGG | 0.340911 | 1_4:-61849728 | Msa0175730:CDS |
CAAATCTTGTTTGTCAAGAA+TGG | 0.341068 | 1_4:+61848792 | None:intergenic |
TCCACACAAAGTCCATTATT+AGG | 0.343699 | 1_4:-61850456 | Msa0175730:CDS |
CTGCCAACAGGAATTGTAAA+AGG | 0.345389 | 1_4:+61849571 | None:intergenic |
GCTGAGTTTGGACTTGAGTT+AGG | 0.348418 | 1_4:+61848535 | None:intergenic |
TGTTGAGTGAATTAGTAAAA+AGG | 0.353427 | 1_4:-61850044 | Msa0175730:CDS |
AGTAGAGTTATGAGAGAAGC+TGG | 0.362568 | 1_4:-61850261 | Msa0175730:CDS |
GCCAATTTAGTTGGCTTTGT+TGG | 0.372056 | 1_4:+61848704 | None:intergenic |
TCATTGTTAACACAATCTAT+AGG | 0.381114 | 1_4:+61850081 | None:intergenic |
TTTATTTAGGTGATTTGAAA+TGG | 0.382295 | 1_4:-61849795 | Msa0175730:CDS |
TTCCTTTGAGATATTCTCTC+TGG | 0.389830 | 1_4:+61848264 | None:intergenic |
TCAAGCTAAGGAGAGAAGTA+TGG | 0.390308 | 1_4:-61849397 | Msa0175730:CDS |
GCCATGCTTGCAACTTCAAC+AGG | 0.392420 | 1_4:-61850576 | Msa0175730:CDS |
AGTTGATCACTTTACTCAAA+AGG | 0.394813 | 1_4:-61848032 | Msa0175730:CDS |
AGTGGTAGATTATGGCTTAT+GGG | 0.396440 | 1_4:-61849667 | Msa0175730:CDS |
TGCAGCTTTCAAACGTGCTC+AGG | 0.397418 | 1_4:-61850391 | Msa0175730:CDS |
AAGTAATCTAAACCTCTCTT+TGG | 0.399086 | 1_4:-61847837 | Msa0175730:CDS |
AGCACTTATTTGCAAAGGTT+TGG | 0.400652 | 1_4:-61848109 | Msa0175730:CDS |
TTGAGGAATCATCATTTCCT+AGG | 0.403714 | 1_4:+61848176 | None:intergenic |
TTAAGGATCTCTGCAAGAAA+TGG | 0.403868 | 1_4:-61848849 | Msa0175730:CDS |
TCCTCATAGAGTGTTCTTCA+TGG | 0.406650 | 1_4:-61848068 | Msa0175730:CDS |
AAATTATAGGCCAATTTAGT+TGG | 0.410863 | 1_4:+61848695 | None:intergenic |
GTTAACACAATCTATAGGTT+TGG | 0.415012 | 1_4:+61850086 | None:intergenic |
GAATATTGAGGACCTAATAA+TGG | 0.416354 | 1_4:+61850444 | None:intergenic |
TTTGTTGAAGAAACTTCAAT+TGG | 0.417218 | 1_4:+61850189 | None:intergenic |
CCCTTCCCTAGAAACTATTT+GGG | 0.418380 | 1_4:-61849602 | Msa0175730:CDS |
ATAGGAAAATGCAAGACTTA+AGG | 0.420370 | 1_4:-61848866 | Msa0175730:intron |
ACAAAGGCTACTAGTTGGTT+TGG | 0.420923 | 1_4:+61850786 | None:intergenic |
GCCTAAGTTTGAACTTTGAC+AGG | 0.423851 | 1_4:-61849543 | Msa0175730:intron |
AAGCCTCAAGTTCTTAGCCT+TGG | 0.424000 | 1_4:-61850120 | Msa0175730:CDS |
GTGATGGAAAGGTTTGAGAT+AGG | 0.428812 | 1_4:-61849961 | Msa0175730:CDS |
CCTCAAGTTCTTAGCCTTGG+TGG | 0.431448 | 1_4:-61850117 | Msa0175730:CDS |
TCAAGTGAGGAAAATGAAGT+TGG | 0.432178 | 1_4:+61848742 | None:intergenic |
TTTCAAGATAAAGTAGGAGT+TGG | 0.433658 | 1_4:-61849354 | Msa0175730:CDS |
GGCTAAGAACTTGAGGCTTA+AGG | 0.443449 | 1_4:+61850124 | None:intergenic |
AAAAGAAACACTGTTATTGT+AGG | 0.444630 | 1_4:-61850021 | Msa0175730:CDS |
AAGTTACACAGTGGAAGATC+AGG | 0.449020 | 1_4:-61849199 | Msa0175730:intron |
TATAATTTCTGAACAAGAAA+AGG | 0.450081 | 1_4:-61848680 | Msa0175730:CDS |
GAAAAGACCAAGAGATGAGT+TGG | 0.452465 | 1_4:-61848134 | Msa0175730:CDS |
GTGAAAAGCTATATGGGAAG+AGG | 0.452953 | 1_4:-61849826 | Msa0175730:CDS |
CTTAGGCTTAAGCTGCCAAC+AGG | 0.452987 | 1_4:+61849559 | None:intergenic |
CAAGATTCTCTGTGATGCCT+TGG | 0.460963 | 1_4:-61848443 | Msa0175730:CDS |
TTAGGATTGGACAAAAGATC+TGG | 0.461787 | 1_4:+61848553 | None:intergenic |
GGAAGTTGAAAAGAAATTTG+TGG | 0.463470 | 1_4:-61849863 | Msa0175730:CDS |
TTTCAGCTATAGTTATTAGT+GGG | 0.463929 | 1_4:-61847635 | Msa0175730:three_prime_UTR |
GATGATGATGATTGCTATGA+TGG | 0.465266 | 1_4:-61848616 | Msa0175730:CDS |
TAAGGCTAAGTTCTTTGGAC+TGG | 0.466737 | 1_4:+61850142 | None:intergenic |
TTGGACAAAAGATCTGGTTT+CGG | 0.468033 | 1_4:+61848559 | None:intergenic |
GTTGATCACTTTACTCAAAA+GGG | 0.476491 | 1_4:-61848031 | Msa0175730:CDS |
AGCCTTGTGAAAAGCTATAT+GGG | 0.482010 | 1_4:-61849832 | Msa0175730:CDS |
GTTTGGACTTGAGTTAGGAT+TGG | 0.483533 | 1_4:+61848540 | None:intergenic |
TTCTGTTGAGCATATGGTAA+TGG | 0.487719 | 1_4:-61849722 | Msa0175730:CDS |
AACATGGCTTCAAAATTGTA+AGG | 0.492394 | 1_4:-61849229 | Msa0175730:CDS |
TCCTGTTGAAGTTGCAAGCA+TGG | 0.496549 | 1_4:+61850575 | None:intergenic |
CTCATAACTCTACTAACACT+TGG | 0.499188 | 1_4:+61850270 | None:intergenic |
ACCTGTCAAAGTTCAAACTT+AGG | 0.500140 | 1_4:+61849542 | None:intergenic |
AGCATTATCATGATCTTCAA+TGG | 0.505808 | 1_4:+61847802 | None:intergenic |
TGAGATAGGTAATGTTCCTA+TGG | 0.506308 | 1_4:-61849947 | Msa0175730:CDS |
GTGGTGAGAGTGGTAGATTA+TGG | 0.507287 | 1_4:-61849675 | Msa0175730:CDS |
AGTGGAACAGATTCACCATC+AGG | 0.509559 | 1_4:+61847971 | None:intergenic |
AAAAGACCAAGAGATGAGTT+GGG | 0.510626 | 1_4:-61848133 | Msa0175730:CDS |
GTGCTTCCCAACTCATCTCT+TGG | 0.513956 | 1_4:+61848127 | None:intergenic |
ATATTCCTAAAACATATAAG+AGG | 0.515258 | 1_4:+61849895 | None:intergenic |
TGAATGATTTCTTTATGTTG+TGG | 0.516335 | 1_4:+61848409 | None:intergenic |
GAAAGCTGCAACCAAAGCAT+TGG | 0.516890 | 1_4:+61850404 | None:intergenic |
TCTTGTTTGTCAAGAATGGA+AGG | 0.521069 | 1_4:+61848796 | None:intergenic |
AGAAAACAAAGGCTACTAGT+TGG | 0.524805 | 1_4:+61850781 | None:intergenic |
CCCAAATAGTTTCTAGGGAA+GGG | 0.525348 | 1_4:+61849602 | None:intergenic |
AAGCTCCCAAATAGTTTCTA+GGG | 0.525655 | 1_4:+61849597 | None:intergenic |
ACTTTGATGATCCTCTATCA+TGG | 0.525748 | 1_4:+61847856 | None:intergenic |
TGAAAAGCTATATGGGAAGA+GGG | 0.530391 | 1_4:-61849825 | Msa0175730:CDS |
GTGGTAGATTATGGCTTATG+GGG | 0.532642 | 1_4:-61849666 | Msa0175730:CDS |
TTTGTGTGGAAGCTGGTAAA+CGG | 0.534647 | 1_4:+61850469 | None:intergenic |
TAGCTAAAGGAGTGATGGAA+AGG | 0.535032 | 1_4:-61849972 | Msa0175730:CDS |
CATCATGCGCTGAAAACAAA+GGG | 0.540396 | 1_4:-61847886 | Msa0175730:CDS |
GAAAATGAAGTTGGTGATGA+AGG | 0.541235 | 1_4:+61848751 | None:intergenic |
TCCCAAATAGTTTCTAGGGA+AGG | 0.541487 | 1_4:+61849601 | None:intergenic |
ATTTACCTCCCTGACAAGAA+AGG | 0.546449 | 1_4:-61850860 | Msa0175730:five_prime_UTR |
AGGGAAAGAGACCATGATAG+AGG | 0.549596 | 1_4:-61847867 | Msa0175730:CDS |
AGCTTCTTCAAGTGAAGCAG+TGG | 0.550112 | 1_4:-61848515 | Msa0175730:CDS |
TCCATGAAGAACACTCTATG+AGG | 0.550163 | 1_4:+61848067 | None:intergenic |
AATGCTGAGGGAGTAGCTAA+AGG | 0.550237 | 1_4:-61849985 | Msa0175730:CDS |
TCAAGAGCTTTGCATTGAAG+AGG | 0.552190 | 1_4:+61850516 | None:intergenic |
GCAGTTCAAGCTTGCCAACA+TGG | 0.553169 | 1_4:-61849245 | Msa0175730:CDS |
TGTACATATCTTAACTCCAT+AGG | 0.560856 | 1_4:+61849931 | None:intergenic |
TCATCATGCGCTGAAAACAA+AGG | 0.563706 | 1_4:-61847887 | Msa0175730:CDS |
ACCTAATAATGGACTTTGTG+TGG | 0.564401 | 1_4:+61850455 | None:intergenic |
TGGGAAGCACTTATTTGCAA+AGG | 0.564536 | 1_4:-61848114 | Msa0175730:CDS |
TCTTCAAGTGAAGCAGTGGA+TGG | 0.565452 | 1_4:-61848511 | Msa0175730:CDS |
TGAGGAATCATCATTTCCTA+GGG | 0.565890 | 1_4:+61848177 | None:intergenic |
AGAGAGTGTTTCTAATGCTG+AGG | 0.567960 | 1_4:-61849998 | Msa0175730:CDS |
GTTAGTGGAAGTGGTGAGAG+TGG | 0.569181 | 1_4:-61849685 | Msa0175730:CDS |
CAAGAGCTTTGCATTGAAGA+GGG | 0.570256 | 1_4:+61850517 | None:intergenic |
GTGAATCTAGCAACAAGAAG+AGG | 0.571262 | 1_4:-61850633 | Msa0175730:CDS |
ATGAGCACTTTCTCTTCCCT+AGG | 0.572261 | 1_4:-61848193 | Msa0175730:CDS |
AATGGACTTTGTGTGGAAGC+TGG | 0.579123 | 1_4:+61850462 | None:intergenic |
ATCAAGAAAGCAATTGAATG+TGG | 0.579531 | 1_4:-61848007 | Msa0175730:CDS |
GGGAGTAGCTAAAGGAGTGA+TGG | 0.580375 | 1_4:-61849977 | Msa0175730:CDS |
TGGTGAATCTGTTCCACTCA+AGG | 0.581569 | 1_4:-61847966 | Msa0175730:CDS |
TTGTGGAAACTTGTTCTCCA+AGG | 0.583160 | 1_4:+61848426 | None:intergenic |
GAAGGAGTGGTTGAATATTG+AGG | 0.588763 | 1_4:+61850432 | None:intergenic |
GGTTTCGGAACATTTCTATG+TGG | 0.595826 | 1_4:+61848574 | None:intergenic |
GAGAGTGTTTCTAATGCTGA+GGG | 0.596744 | 1_4:-61849997 | Msa0175730:CDS |
ACCAAAGCATTGGAAAGTGA+AGG | 0.598141 | 1_4:+61850414 | None:intergenic |
ATGACAATGGCATCCTTGAG+TGG | 0.607162 | 1_4:+61847953 | None:intergenic |
CCACCAAGGCTAAGAACTTG+AGG | 0.610990 | 1_4:+61850117 | None:intergenic |
TTCAGCTATAGTTATTAGTG+GGG | 0.612891 | 1_4:-61847634 | Msa0175730:three_prime_UTR |
CTTGTTTGTCAAGAATGGAA+GGG | 0.613568 | 1_4:+61848797 | None:intergenic |
TTCACTACTGAAAATGACAA+TGG | 0.618443 | 1_4:+61847940 | None:intergenic |
GATCATGATAATGCTGACAT+TGG | 0.618644 | 1_4:-61847794 | Msa0175730:CDS |
AGCCAGAGAGAATATCTCAA+AGG | 0.623199 | 1_4:-61848266 | Msa0175730:CDS |
GAAAAGCTATATGGGAAGAG+GGG | 0.626232 | 1_4:-61849824 | Msa0175730:CDS |
AGCATTGGAAAGTGAAGGAG+TGG | 0.626564 | 1_4:+61850419 | None:intergenic |
TTATTATACACTGAAAGTGC+TGG | 0.631798 | 1_4:-61848640 | Msa0175730:CDS |
AGAGAGAGAGTAGAAAACAA+AGG | 0.633989 | 1_4:+61850770 | None:intergenic |
AAAATCATAAGCAAGAAACA+TGG | 0.634641 | 1_4:-61848315 | Msa0175730:CDS |
ATGGCACTAGCAACATGAAG+AGG | 0.635949 | 1_4:+61850594 | None:intergenic |
CTATATTCAGATCCAAAGAG+AGG | 0.642276 | 1_4:+61847825 | None:intergenic |
TTGTGCCTTTCTTGTCAGGG+AGG | 0.643684 | 1_4:+61850855 | None:intergenic |
GGTACAATAAGAGCAAGATG+TGG | 0.689679 | 1_4:+61850807 | None:intergenic |
GGAAGTATAACAATTCCTGA+TGG | 0.693696 | 1_4:-61847986 | Msa0175730:CDS |
GGAAGAAAGAAGTTACACAG+TGG | 0.706086 | 1_4:-61849208 | Msa0175730:CDS |
GCTCAGGCTCACCAAAGACG+CGG | 0.718198 | 1_4:-61850375 | Msa0175730:CDS |
GTTTGGTGTATGAACCACCA+AGG | 0.726709 | 1_4:+61850103 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAAAATATTGGTTATT+TGG | + | chr1_4:61847659-61847678 | None:intergenic | 10.0% |
!! | AAATAACAAAATTACTTTAA+TGG | - | chr1_4:61849314-61849333 | Msa0175730:CDS | 10.0% |
!!! | AATTAGTTTTAATTTGTAAT+AGG | - | chr1_4:61850645-61850664 | Msa0175730:CDS | 10.0% |
!! | GATCTTGAAAAAAAAAATAT+TGG | + | chr1_4:61847667-61847686 | None:intergenic | 15.0% |
!! | TAAATAATGTAAAACATAAG+AGG | + | chr1_4:61848966-61848985 | None:intergenic | 15.0% |
!! | AAAGATAAGAAAATAGAAAA+AGG | + | chr1_4:61849491-61849510 | None:intergenic | 15.0% |
!! | TGTTCTATATATGTTAAATT+TGG | - | chr1_4:61850684-61850703 | Msa0175730:CDS | 15.0% |
!! | GTTCTATATATGTTAAATTT+GGG | - | chr1_4:61850685-61850704 | Msa0175730:CDS | 15.0% |
!! | ATATTCCTAAAACATATAAG+AGG | + | chr1_4:61848500-61848519 | None:intergenic | 20.0% |
!!! | TTTTAGGAATATTAGTAAAG+AGG | - | chr1_4:61848508-61848527 | Msa0175730:CDS | 20.0% |
!! | TTTATTTAGGTGATTTGAAA+TGG | - | chr1_4:61848597-61848616 | Msa0175730:CDS | 20.0% |
!! | AACTATATATATGCAAAAAC+AGG | - | chr1_4:61849461-61849480 | Msa0175730:intron | 20.0% |
!!! | TTTTTCTTTCTATGTGAAAT+AGG | - | chr1_4:61849508-61849527 | Msa0175730:intron | 20.0% |
!!! | TTTTCTTGTTCAGAAATTAT+AGG | + | chr1_4:61849713-61849732 | None:intergenic | 20.0% |
!! | TATAATTTCTGAACAAGAAA+AGG | - | chr1_4:61849712-61849731 | Msa0175730:CDS | 20.0% |
!!! | TTTTTTTTCAAGATCATGAG+AGG | - | chr1_4:61847672-61847691 | Msa0175730:three_prime_UTR | 25.0% |
! | TTTGTTGAAGAAACTTCAAT+TGG | + | chr1_4:61848206-61848225 | None:intergenic | 25.0% |
! | TCATTGTTAACACAATCTAT+AGG | + | chr1_4:61848314-61848333 | None:intergenic | 25.0% |
! | TGTTGAGTGAATTAGTAAAA+AGG | - | chr1_4:61848348-61848367 | Msa0175730:CDS | 25.0% |
! | AAAAGAAACACTGTTATTGT+AGG | - | chr1_4:61848371-61848390 | Msa0175730:CDS | 25.0% |
!!! | GGTAATGGAGATTAAAAAAT+TGG | - | chr1_4:61848685-61848704 | Msa0175730:CDS | 25.0% |
! | GAGATTAAAAAATTGGTTAG+TGG | - | chr1_4:61848692-61848711 | Msa0175730:CDS | 25.0% |
!!! | TTATAGTGATTTTCAAGCTA+AGG | - | chr1_4:61848983-61849002 | Msa0175730:intron | 25.0% |
!!! | TTGACTTTTCAAGATAAAGT+AGG | - | chr1_4:61849032-61849051 | Msa0175730:intron | 25.0% |
!! | TTCAGTGTGAAATTTTTGTA+CGG | - | chr1_4:61849413-61849432 | Msa0175730:intron | 25.0% |
! | AAATTATAGGCCAATTTAGT+TGG | + | chr1_4:61849700-61849719 | None:intergenic | 25.0% |
!! | TATAATAACTCACACTCTTT+TGG | + | chr1_4:61849740-61849759 | None:intergenic | 25.0% |
! | TGAATGATTTCTTTATGTTG+TGG | + | chr1_4:61849986-61850005 | None:intergenic | 25.0% |
! | AAAATCATAAGCAAGAAACA+TGG | - | chr1_4:61850077-61850096 | Msa0175730:CDS | 25.0% |
! | TGTAACAACTTTATGACAAT+TGG | - | chr1_4:61850175-61850194 | Msa0175730:CDS | 25.0% |
!! | TTTTCAGCTATAGTTATTAG+TGG | - | chr1_4:61850756-61850775 | Msa0175730:five_prime_UTR | 25.0% |
! | TTTCAGCTATAGTTATTAGT+GGG | - | chr1_4:61850757-61850776 | Msa0175730:five_prime_UTR | 25.0% |
GAATATTGAGGACCTAATAA+TGG | + | chr1_4:61847951-61847970 | None:intergenic | 30.0% | |
GTTAACACAATCTATAGGTT+TGG | + | chr1_4:61848309-61848328 | None:intergenic | 30.0% | |
TGTACATATCTTAACTCCAT+AGG | + | chr1_4:61848464-61848483 | None:intergenic | 30.0% | |
! | GTCTTCCTCTTATATGTTTT+AGG | - | chr1_4:61848492-61848511 | Msa0175730:CDS | 30.0% |
GGAAGTTGAAAAGAAATTTG+TGG | - | chr1_4:61848529-61848548 | Msa0175730:CDS | 30.0% | |
! | AGAGGGGTTATTCTTTATTT+AGG | - | chr1_4:61848584-61848603 | Msa0175730:CDS | 30.0% |
!! | TGAAATGGTTGTTTGAGTTT+TGG | - | chr1_4:61848612-61848631 | Msa0175730:CDS | 30.0% |
CAAGTTACTGTGAACAAAAA+AGG | - | chr1_4:61848636-61848655 | Msa0175730:CDS | 30.0% | |
AAAAAATTGGTTAGTGGAAG+TGG | - | chr1_4:61848698-61848717 | Msa0175730:CDS | 30.0% | |
TTTCAAGATAAAGTAGGAGT+TGG | - | chr1_4:61849038-61849057 | Msa0175730:intron | 30.0% | |
!!! | TTACAATTTTGAAGCCATGT+TGG | + | chr1_4:61849164-61849183 | None:intergenic | 30.0% |
AACATGGCTTCAAAATTGTA+AGG | - | chr1_4:61849163-61849182 | Msa0175730:intron | 30.0% | |
AATAGTCTCATACACTTACT+TGG | - | chr1_4:61849226-61849245 | Msa0175730:CDS | 30.0% | |
ATAGGAAAATGCAAGACTTA+AGG | - | chr1_4:61849526-61849545 | Msa0175730:intron | 30.0% | |
! | CAAATCTTGTTTGTCAAGAA+TGG | + | chr1_4:61849603-61849622 | None:intergenic | 30.0% |
!!! | GTTAGACTTTTTTTCAAGTG+AGG | + | chr1_4:61849666-61849685 | None:intergenic | 30.0% |
! | TTATTATACACTGAAAGTGC+TGG | - | chr1_4:61849752-61849771 | Msa0175730:CDS | 30.0% |
TCATTCCTGATCTACAAAAA+AGG | + | chr1_4:61850027-61850046 | None:intergenic | 30.0% | |
!!! | GAAACATGGATGTTTTTTCT+TGG | - | chr1_4:61850091-61850110 | Msa0175730:CDS | 30.0% |
!! | GAACTAGCTAAAGTTGTTTT+TGG | - | chr1_4:61850148-61850167 | Msa0175730:CDS | 30.0% |
! | TTTGGATTTTTCATCACTTG+AGG | + | chr1_4:61850236-61850255 | None:intergenic | 30.0% |
CAAGTGATGAAAAATCCAAA+AGG | - | chr1_4:61850236-61850255 | Msa0175730:CDS | 30.0% | |
AGTTGATCACTTTACTCAAA+AGG | - | chr1_4:61850360-61850379 | Msa0175730:CDS | 30.0% | |
GTTGATCACTTTACTCAAAA+GGG | - | chr1_4:61850361-61850380 | Msa0175730:CDS | 30.0% | |
ATCAAGAAAGCAATTGAATG+TGG | - | chr1_4:61850385-61850404 | Msa0175730:CDS | 30.0% | |
TTCACTACTGAAAATGACAA+TGG | + | chr1_4:61850455-61850474 | None:intergenic | 30.0% | |
AAGTAATCTAAACCTCTCTT+TGG | - | chr1_4:61850555-61850574 | Msa0175730:CDS | 30.0% | |
AGCATTATCATGATCTTCAA+TGG | + | chr1_4:61850593-61850612 | None:intergenic | 30.0% | |
CAAACAAGTAGAGCAAAAAA+AGG | + | chr1_4:61850735-61850754 | None:intergenic | 30.0% | |
TTCAGCTATAGTTATTAGTG+GGG | - | chr1_4:61850758-61850777 | Msa0175730:five_prime_UTR | 30.0% | |
!!! | ATGCATGTATTTTTCAAGCT+TGG | - | chr1_4:61850844-61850863 | Msa0175730:five_prime_UTR | 30.0% |
!!! | ATGTATTTTTCAAGCTTGGA+TGG | - | chr1_4:61850848-61850867 | Msa0175730:five_prime_UTR | 30.0% |
! | ATTTTGTGCCTTTCTTGTCA+GGG | + | chr1_4:61847543-61847562 | None:intergenic | 35.0% |
! | AATTTTGTGCCTTTCTTGTC+AGG | + | chr1_4:61847544-61847563 | None:intergenic | 35.0% |
AGAAAACAAAGGCTACTAGT+TGG | + | chr1_4:61847614-61847633 | None:intergenic | 35.0% | |
AGAGAGAGAGTAGAAAACAA+AGG | + | chr1_4:61847625-61847644 | None:intergenic | 35.0% | |
!!! | TTTTTCAAGATCATGAGAGG+AGG | - | chr1_4:61847675-61847694 | Msa0175730:three_prime_UTR | 35.0% |
TCCACACAAAGTCCATTATT+AGG | - | chr1_4:61847936-61847955 | Msa0175730:CDS | 35.0% | |
!! | ACCTAATAATGGACTTTGTG+TGG | + | chr1_4:61847940-61847959 | None:intergenic | 35.0% |
CTCATAACTCTACTAACACT+TGG | + | chr1_4:61848125-61848144 | None:intergenic | 35.0% | |
TGAGATAGGTAATGTTCCTA+TGG | - | chr1_4:61848445-61848464 | Msa0175730:CDS | 35.0% | |
! | AAGCCTTGTGAAAAGCTATA+TGG | - | chr1_4:61848559-61848578 | Msa0175730:CDS | 35.0% |
! | AGCCTTGTGAAAAGCTATAT+GGG | - | chr1_4:61848560-61848579 | Msa0175730:CDS | 35.0% |
! | TTCCCATATAGCTTTTCACA+AGG | + | chr1_4:61848565-61848584 | None:intergenic | 35.0% |
TGAAAAGCTATATGGGAAGA+GGG | - | chr1_4:61848567-61848586 | Msa0175730:CDS | 35.0% | |
CTATTGTTCTGTTGAGCATA+TGG | - | chr1_4:61848664-61848683 | Msa0175730:CDS | 35.0% | |
TTCTGTTGAGCATATGGTAA+TGG | - | chr1_4:61848670-61848689 | Msa0175730:CDS | 35.0% | |
AGTGGTAGATTATGGCTTAT+GGG | - | chr1_4:61848725-61848744 | Msa0175730:CDS | 35.0% | |
AAGCTCCCAAATAGTTTCTA+GGG | + | chr1_4:61848798-61848817 | None:intergenic | 35.0% | |
! | CATCCTTTTACAATTCCTGT+TGG | - | chr1_4:61848818-61848837 | Msa0175730:CDS | 35.0% |
ACCTGTCAAAGTTCAAACTT+AGG | + | chr1_4:61848853-61848872 | None:intergenic | 35.0% | |
TTAAGGATCTCTGCAAGAAA+TGG | - | chr1_4:61849543-61849562 | Msa0175730:intron | 35.0% | |
CTTGTTTGTCAAGAATGGAA+GGG | + | chr1_4:61849598-61849617 | None:intergenic | 35.0% | |
! | TCTTGTTTGTCAAGAATGGA+AGG | + | chr1_4:61849599-61849618 | None:intergenic | 35.0% |
!! | GAAAATGAAGTTGGTGATGA+AGG | + | chr1_4:61849644-61849663 | None:intergenic | 35.0% |
TCAAGTGAGGAAAATGAAGT+TGG | + | chr1_4:61849653-61849672 | None:intergenic | 35.0% | |
TCCAACAAAGCCAACTAAAT+TGG | - | chr1_4:61849687-61849706 | Msa0175730:CDS | 35.0% | |
! | GATGATGATGATTGCTATGA+TGG | - | chr1_4:61849776-61849795 | Msa0175730:CDS | 35.0% |
! | TTGGACAAAAGATCTGGTTT+CGG | + | chr1_4:61849836-61849855 | None:intergenic | 35.0% |
TTAGGATTGGACAAAAGATC+TGG | + | chr1_4:61849842-61849861 | None:intergenic | 35.0% | |
!!! | ACTGTCCTTTTTTGTAGATC+AGG | - | chr1_4:61850019-61850038 | Msa0175730:CDS | 35.0% |
AGATCAGGAATGAGAAAAAG+AGG | - | chr1_4:61850034-61850053 | Msa0175730:CDS | 35.0% | |
GATCAGGAATGAGAAAAAGA+GGG | - | chr1_4:61850035-61850054 | Msa0175730:CDS | 35.0% | |
!! | TTCCTTTGAGATATTCTCTC+TGG | + | chr1_4:61850131-61850150 | None:intergenic | 35.0% |
TGAGGAATCATCATTTCCTA+GGG | + | chr1_4:61850218-61850237 | None:intergenic | 35.0% | |
TTGAGGAATCATCATTTCCT+AGG | + | chr1_4:61850219-61850238 | None:intergenic | 35.0% | |
!! | ATCTCTTGGTCTTTTCCTTT+TGG | + | chr1_4:61850254-61850273 | None:intergenic | 35.0% |
AAAAGACCAAGAGATGAGTT+GGG | - | chr1_4:61850259-61850278 | Msa0175730:CDS | 35.0% | |
AGCACTTATTTGCAAAGGTT+TGG | - | chr1_4:61850283-61850302 | Msa0175730:CDS | 35.0% | |
! | GGAAGTATAACAATTCCTGA+TGG | - | chr1_4:61850406-61850425 | Msa0175730:CDS | 35.0% |
! | ACTTTGATGATCCTCTATCA+TGG | + | chr1_4:61850539-61850558 | None:intergenic | 35.0% |
CTATATTCAGATCCAAAGAG+AGG | + | chr1_4:61850570-61850589 | None:intergenic | 35.0% | |
! | GATCATGATAATGCTGACAT+TGG | - | chr1_4:61850598-61850617 | Msa0175730:CDS | 35.0% |
! | CTTGTCAGGGAGGTAAATTT+TGG | + | chr1_4:61847530-61847549 | None:intergenic | 40.0% |
ATTTACCTCCCTGACAAGAA+AGG | - | chr1_4:61847532-61847551 | Msa0175730:three_prime_UTR | 40.0% | |
GGTACAATAAGAGCAAGATG+TGG | + | chr1_4:61847588-61847607 | None:intergenic | 40.0% | |
ACAAAGGCTACTAGTTGGTT+TGG | + | chr1_4:61847609-61847628 | None:intergenic | 40.0% | |
GTGAATCTAGCAACAAGAAG+AGG | - | chr1_4:61847759-61847778 | Msa0175730:CDS | 40.0% | |
CAAGAGCTTTGCATTGAAGA+GGG | + | chr1_4:61847878-61847897 | None:intergenic | 40.0% | |
TCAAGAGCTTTGCATTGAAG+AGG | + | chr1_4:61847879-61847898 | None:intergenic | 40.0% | |
TTTGTGTGGAAGCTGGTAAA+CGG | + | chr1_4:61847926-61847945 | None:intergenic | 40.0% | |
GAAGGAGTGGTTGAATATTG+AGG | + | chr1_4:61847963-61847982 | None:intergenic | 40.0% | |
TCCTTCACTTTCCAATGCTT+TGG | - | chr1_4:61847977-61847996 | Msa0175730:CDS | 40.0% | |
!! | ACCAAAGCATTGGAAAGTGA+AGG | + | chr1_4:61847981-61848000 | None:intergenic | 40.0% |
AGTAGAGTTATGAGAGAAGC+TGG | - | chr1_4:61848131-61848150 | Msa0175730:CDS | 40.0% | |
TAAGGCTAAGTTCTTTGGAC+TGG | + | chr1_4:61848253-61848272 | None:intergenic | 40.0% | |
AGGCTTAAGGCTAAGTTCTT+TGG | + | chr1_4:61848258-61848277 | None:intergenic | 40.0% | |
!! | AGAGAGTGTTTCTAATGCTG+AGG | - | chr1_4:61848394-61848413 | Msa0175730:CDS | 40.0% |
!! | GAGAGTGTTTCTAATGCTGA+GGG | - | chr1_4:61848395-61848414 | Msa0175730:CDS | 40.0% |
! | TAGCTAAAGGAGTGATGGAA+AGG | - | chr1_4:61848420-61848439 | Msa0175730:CDS | 40.0% |
! | GTGATGGAAAGGTTTGAGAT+AGG | - | chr1_4:61848431-61848450 | Msa0175730:CDS | 40.0% |
GTGAAAAGCTATATGGGAAG+AGG | - | chr1_4:61848566-61848585 | Msa0175730:CDS | 40.0% | |
GAAAAGCTATATGGGAAGAG+GGG | - | chr1_4:61848568-61848587 | Msa0175730:CDS | 40.0% | |
GAGTGGTAGATTATGGCTTA+TGG | - | chr1_4:61848724-61848743 | Msa0175730:CDS | 40.0% | |
GTGGTAGATTATGGCTTATG+GGG | - | chr1_4:61848726-61848745 | Msa0175730:CDS | 40.0% | |
ACCCTTCCCTAGAAACTATT+TGG | - | chr1_4:61848789-61848808 | Msa0175730:CDS | 40.0% | |
! | CCCAAATAGTTTCTAGGGAA+GGG | + | chr1_4:61848793-61848812 | None:intergenic | 40.0% |
CCCTTCCCTAGAAACTATTT+GGG | - | chr1_4:61848790-61848809 | Msa0175730:CDS | 40.0% | |
! | TCCCAAATAGTTTCTAGGGA+AGG | + | chr1_4:61848794-61848813 | None:intergenic | 40.0% |
GAAGCTCCCAAATAGTTTCT+AGG | + | chr1_4:61848799-61848818 | None:intergenic | 40.0% | |
CTGCCAACAGGAATTGTAAA+AGG | + | chr1_4:61848824-61848843 | None:intergenic | 40.0% | |
GCCTAAGTTTGAACTTTGAC+AGG | - | chr1_4:61848849-61848868 | Msa0175730:CDS | 40.0% | |
TCAAGCTAAGGAGAGAAGTA+TGG | - | chr1_4:61848995-61849014 | Msa0175730:intron | 40.0% | |
GGAAGAAAGAAGTTACACAG+TGG | - | chr1_4:61849184-61849203 | Msa0175730:intron | 40.0% | |
AAGTTACACAGTGGAAGATC+AGG | - | chr1_4:61849193-61849212 | Msa0175730:intron | 40.0% | |
AGTCGTAAGTTCGTAACTGT+TGG | + | chr1_4:61849391-61849410 | None:intergenic | 40.0% | |
!! | GCCAATTTAGTTGGCTTTGT+TGG | + | chr1_4:61849691-61849710 | None:intergenic | 40.0% |
GGTTTCGGAACATTTCTATG+TGG | + | chr1_4:61849821-61849840 | None:intergenic | 40.0% | |
GTTTGGACTTGAGTTAGGAT+TGG | + | chr1_4:61849855-61849874 | None:intergenic | 40.0% | |
TCACTTGAAGAAGCTGAGTT+TGG | + | chr1_4:61849872-61849891 | None:intergenic | 40.0% | |
! | TTGTGGAAACTTGTTCTCCA+AGG | + | chr1_4:61849969-61849988 | None:intergenic | 40.0% |
AGCCAGAGAGAATATCTCAA+AGG | - | chr1_4:61850126-61850145 | Msa0175730:CDS | 40.0% | |
GAAAAGACCAAGAGATGAGT+TGG | - | chr1_4:61850258-61850277 | Msa0175730:CDS | 40.0% | |
!! | TGGGAAGCACTTATTTGCAA+AGG | - | chr1_4:61850278-61850297 | Msa0175730:CDS | 40.0% |
! | TCCTCATAGAGTGTTCTTCA+TGG | - | chr1_4:61850324-61850343 | Msa0175730:CDS | 40.0% |
TCCATGAAGAACACTCTATG+AGG | + | chr1_4:61850328-61850347 | None:intergenic | 40.0% | |
! | TTTTCAGCGCATGATGATTG+TGG | + | chr1_4:61850502-61850521 | None:intergenic | 40.0% |
TCATCATGCGCTGAAAACAA+AGG | - | chr1_4:61850505-61850524 | Msa0175730:CDS | 40.0% | |
CATCATGCGCTGAAAACAAA+GGG | - | chr1_4:61850506-61850525 | Msa0175730:CDS | 40.0% | |
!! | TTTTCAAGCTTGGATGGAGA+TGG | - | chr1_4:61850854-61850873 | Msa0175730:five_prime_UTR | 40.0% |
ATGGCACTAGCAACATGAAG+AGG | + | chr1_4:61847801-61847820 | None:intergenic | 45.0% | |
TCCTGTTGAAGTTGCAAGCA+TGG | + | chr1_4:61847820-61847839 | None:intergenic | 45.0% | |
! | AATGGACTTTGTGTGGAAGC+TGG | + | chr1_4:61847933-61847952 | None:intergenic | 45.0% |
! | AGCATTGGAAAGTGAAGGAG+TGG | + | chr1_4:61847976-61847995 | None:intergenic | 45.0% |
GAAAGCTGCAACCAAAGCAT+TGG | + | chr1_4:61847991-61848010 | None:intergenic | 45.0% | |
GGCTAAGAACTTGAGGCTTA+AGG | + | chr1_4:61848271-61848290 | None:intergenic | 45.0% | |
AAGCCTCAAGTTCTTAGCCT+TGG | - | chr1_4:61848272-61848291 | Msa0175730:CDS | 45.0% | |
!! | GTTTGGTGTATGAACCACCA+AGG | + | chr1_4:61848292-61848311 | None:intergenic | 45.0% |
AATGCTGAGGGAGTAGCTAA+AGG | - | chr1_4:61848407-61848426 | Msa0175730:CDS | 45.0% | |
GTGGTGAGAGTGGTAGATTA+TGG | - | chr1_4:61848717-61848736 | Msa0175730:CDS | 45.0% | |
! | GTCGACAGCGTAAAGCATTT+AGG | + | chr1_4:61849294-61849313 | None:intergenic | 45.0% |
GCTGAGTTTGGACTTGAGTT+AGG | + | chr1_4:61849860-61849879 | None:intergenic | 45.0% | |
AGCTTCTTCAAGTGAAGCAG+TGG | - | chr1_4:61849877-61849896 | Msa0175730:CDS | 45.0% | |
TCTTCAAGTGAAGCAGTGGA+TGG | - | chr1_4:61849881-61849900 | Msa0175730:CDS | 45.0% | |
CAAGATTCTCTGTGATGCCT+TGG | - | chr1_4:61849949-61849968 | Msa0175730:CDS | 45.0% | |
ATGAGCACTTTCTCTTCCCT+AGG | - | chr1_4:61850199-61850218 | Msa0175730:CDS | 45.0% | |
AGTGGAACAGATTCACCATC+AGG | + | chr1_4:61850424-61850443 | None:intergenic | 45.0% | |
TGGTGAATCTGTTCCACTCA+AGG | - | chr1_4:61850426-61850445 | Msa0175730:CDS | 45.0% | |
ATGACAATGGCATCCTTGAG+TGG | + | chr1_4:61850442-61850461 | None:intergenic | 45.0% | |
AGGGAAAGAGACCATGATAG+AGG | - | chr1_4:61850525-61850544 | Msa0175730:CDS | 45.0% | |
TTGTGCCTTTCTTGTCAGGG+AGG | + | chr1_4:61847540-61847559 | None:intergenic | 50.0% | |
GCCATGCTTGCAACTTCAAC+AGG | - | chr1_4:61847816-61847835 | Msa0175730:CDS | 50.0% | |
TGCAGCTTTCAAACGTGCTC+AGG | - | chr1_4:61848001-61848020 | Msa0175730:CDS | 50.0% | |
CCACCAAGGCTAAGAACTTG+AGG | + | chr1_4:61848278-61848297 | None:intergenic | 50.0% | |
!! | CCTCAAGTTCTTAGCCTTGG+TGG | - | chr1_4:61848275-61848294 | Msa0175730:CDS | 50.0% |
GGGAGTAGCTAAAGGAGTGA+TGG | - | chr1_4:61848415-61848434 | Msa0175730:CDS | 50.0% | |
GTTAGTGGAAGTGGTGAGAG+TGG | - | chr1_4:61848707-61848726 | Msa0175730:CDS | 50.0% | |
CTTAGGCTTAAGCTGCCAAC+AGG | + | chr1_4:61848836-61848855 | None:intergenic | 50.0% | |
GCAGTTCAAGCTTGCCAACA+TGG | - | chr1_4:61849147-61849166 | Msa0175730:intron | 50.0% | |
GTGCTTCCCAACTCATCTCT+TGG | + | chr1_4:61850268-61850287 | None:intergenic | 50.0% | |
TCTCGATCGTTCCGCGTCTT+TGG | + | chr1_4:61848031-61848050 | None:intergenic | 55.0% | |
GCTCAGGCTCACCAAAGACG+CGG | - | chr1_4:61848017-61848036 | Msa0175730:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 61847487 | 61850927 | 61847487 | ID=Msa0175730;Name=Msa0175730 |
chr1_4 | mRNA | 61847487 | 61850927 | 61847487 | ID=Msa0175730-mRNA-1;Parent=Msa0175730;Name=Msa0175730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=200|1|1|1|1|1|3|264|847 |
chr1_4 | exon | 61847487 | 61848884 | 61847487 | ID=Msa0175730-mRNA-1:exon:19803;Parent=Msa0175730-mRNA-1 |
chr1_4 | exon | 61849200 | 61849425 | 61849200 | ID=Msa0175730-mRNA-1:exon:19802;Parent=Msa0175730-mRNA-1 |
chr1_4 | exon | 61849544 | 61850927 | 61849544 | ID=Msa0175730-mRNA-1:exon:19801;Parent=Msa0175730-mRNA-1 |
chr1_4 | five_prime_UTR | 61850728 | 61850927 | 61850728 | ID=Msa0175730-mRNA-1:five_prime_utr;Parent=Msa0175730-mRNA-1 |
chr1_4 | CDS | 61849544 | 61850727 | 61849544 | ID=Msa0175730-mRNA-1:cds;Parent=Msa0175730-mRNA-1 |
chr1_4 | CDS | 61849200 | 61849425 | 61849200 | ID=Msa0175730-mRNA-1:cds;Parent=Msa0175730-mRNA-1 |
chr1_4 | CDS | 61847751 | 61848884 | 61847751 | ID=Msa0175730-mRNA-1:cds;Parent=Msa0175730-mRNA-1 |
chr1_4 | three_prime_UTR | 61847487 | 61847750 | 61847487 | ID=Msa0175730-mRNA-1:three_prime_utr;Parent=Msa0175730-mRNA-1 |
Gene Sequence |
Protein sequence |