Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322110 | XP_003595184.1 | 95.795 | 547 | 13 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322110 | sp|Q9LTS3|CKX3_ARATH | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175730 | Msa0322110 | 0.814825 | 1.264835e-51 | -8.615850e-47 |
| Msa0225220 | Msa0322110 | 0.811717 | 6.088760e-51 | -8.615850e-47 |
| Msa0245280 | Msa0322110 | 0.989831 | 7.703578e-180 | -8.615850e-47 |
| Msa0322030 | Msa0322110 | 0.968634 | 5.880326e-129 | -8.615850e-47 |
| Msa0322110 | Msa0342010 | 0.801866 | 7.357568e-49 | -8.615850e-47 |
| Msa0322110 | Msa0717890 | 0.819103 | 1.384671e-52 | -8.615850e-47 |
| Msa0322110 | Msa0986510 | 0.800732 | 1.255308e-48 | -8.615850e-47 |
| Msa0322110 | Msa1004970 | 0.804383 | 2.218204e-49 | -8.615850e-47 |
| Msa0322110 | Msa1232700 | 0.801031 | 1.090885e-48 | -8.615850e-47 |
| Msa0322110 | Msa1307560 | 0.801227 | 9.948028e-49 | -8.615850e-47 |
| Msa0322110 | Msa1313280 | 0.802459 | 5.555404e-49 | -8.615850e-47 |
| Msa0322110 | Msa1389200 | 0.802255 | 6.119879e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322110 | MtrunA17_Chr2g0299371 | 95.795 | 547 | 13 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1066 |
| Msa0322110 | MtrunA17_Chr4g0071111 | 71.140 | 544 | 137 | 9 | 1 | 542 | 1 | 526 | 0.0 | 795 |
| Msa0322110 | MtrunA17_Chr4g0071121 | 58.635 | 498 | 185 | 7 | 47 | 542 | 40 | 518 | 0.0 | 592 |
| Msa0322110 | MtrunA17_Chr3g0141981 | 51.115 | 538 | 228 | 12 | 12 | 542 | 14 | 523 | 4.79e-177 | 509 |
| Msa0322110 | MtrunA17_Chr3g0091141 | 51.633 | 490 | 204 | 12 | 61 | 544 | 81 | 543 | 1.47e-165 | 481 |
| Msa0322110 | MtrunA17_Chr4g0020621 | 49.020 | 510 | 228 | 9 | 40 | 541 | 36 | 521 | 1.57e-165 | 480 |
| Msa0322110 | MtrunA17_Chr7g0257061 | 49.898 | 491 | 213 | 10 | 59 | 541 | 71 | 536 | 4.35e-161 | 469 |
| Msa0322110 | MtrunA17_Chr1g0150941 | 43.434 | 495 | 246 | 12 | 60 | 544 | 36 | 506 | 8.38e-135 | 401 |
| Msa0322110 | MtrunA17_Chr2g0299361 | 55.108 | 323 | 122 | 6 | 221 | 541 | 9 | 310 | 3.81e-118 | 351 |
| Msa0322110 | MtrunA17_Chr2g0299351 | 52.514 | 179 | 73 | 4 | 46 | 221 | 36 | 205 | 1.50e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322110 | AT5G56970.1 | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 604 |
| Msa0322110 | AT1G75450.1 | 51.201 | 541 | 229 | 11 | 11 | 543 | 9 | 522 | 0.0 | 524 |
| Msa0322110 | AT1G75450.2 | 51.107 | 542 | 229 | 12 | 11 | 543 | 5 | 519 | 1.92e-180 | 519 |
| Msa0322110 | AT4G29740.2 | 50.000 | 508 | 223 | 10 | 46 | 542 | 37 | 524 | 1.67e-174 | 503 |
| Msa0322110 | AT2G19500.1 | 48.356 | 517 | 234 | 6 | 34 | 541 | 9 | 501 | 9.91e-173 | 498 |
| Msa0322110 | AT5G56970.2 | 58.481 | 395 | 146 | 4 | 50 | 444 | 47 | 423 | 4.50e-165 | 475 |
| Msa0322110 | AT2G41510.1 | 46.642 | 551 | 245 | 14 | 9 | 541 | 20 | 539 | 1.21e-162 | 475 |
| Msa0322110 | AT2G41510.2 | 49.795 | 488 | 212 | 10 | 62 | 541 | 139 | 601 | 9.55e-162 | 475 |
| Msa0322110 | AT3G63440.1 | 48.381 | 494 | 219 | 11 | 61 | 543 | 60 | 528 | 2.57e-159 | 465 |
| Msa0322110 | AT5G21482.1 | 45.525 | 514 | 250 | 14 | 41 | 544 | 30 | 523 | 1.35e-142 | 422 |
| Msa0322110 | AT4G29740.1 | 50.367 | 409 | 176 | 7 | 46 | 444 | 37 | 428 | 1.12e-135 | 400 |
| Msa0322110 | AT2G41510.3 | 46.325 | 449 | 200 | 11 | 9 | 444 | 20 | 440 | 3.73e-127 | 379 |
| Msa0322110 | AT4G29740.3 | 47.661 | 342 | 147 | 8 | 46 | 372 | 37 | 361 | 6.67e-101 | 309 |
Find 113 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGTGCATTGGATTATT+TGG | 0.147725 | 2_4:+24412976 | Msa0322110:CDS |
| AGAAGATCTCCAATTATTTA+TGG | 0.166494 | 2_4:-24413026 | None:intergenic |
| AAATCTAAGATTCGAGATTT+TGG | 0.190122 | 2_4:-24413640 | None:intergenic |
| AGAATGGTCATCATAATATT+TGG | 0.193226 | 2_4:-24413125 | None:intergenic |
| ACTCAAGTGGGTTTGATAAT+TGG | 0.218931 | 2_4:+24414303 | Msa0322110:CDS |
| CTTGGAGGATTAGGACAATT+TGG | 0.239178 | 2_4:+24411592 | Msa0322110:CDS |
| ATGGACTTGCACCTGTTTCT+TGG | 0.244954 | 2_4:+24409889 | Msa0322110:CDS |
| GAAGCTAGTTCAATGGCTTT+TGG | 0.253556 | 2_4:-24409528 | None:intergenic |
| TGATGGTGTTGTTGGAATTA+AGG | 0.254916 | 2_4:+24409776 | Msa0322110:CDS |
| CATGGAGTTCTTGGAGGATT+AGG | 0.266390 | 2_4:+24411583 | Msa0322110:CDS |
| GAACTAGCTTCAAGTGATTA+TGG | 0.267068 | 2_4:+24409540 | Msa0322110:CDS |
| GACTTACTTGTTTCTATTCA+TGG | 0.273299 | 2_4:-24413731 | None:intergenic |
| GATTATCTTTACTTGACTAT+TGG | 0.278961 | 2_4:+24409915 | Msa0322110:CDS |
| TCATTGAGATTAACCGTTCT+TGG | 0.285261 | 2_4:-24412943 | None:intergenic |
| CATCAATTGGATGTTGTTAC+TGG | 0.294573 | 2_4:+24410005 | Msa0322110:CDS |
| ATTAGGAGAATGAAGTATAT+TGG | 0.295442 | 2_4:-24409387 | None:intergenic |
| ATCAAGGACCCATAAATAAT+TGG | 0.295533 | 2_4:+24413017 | Msa0322110:CDS |
| GATTAACCGTTCTTGGTCTT+TGG | 0.297638 | 2_4:-24412936 | None:intergenic |
| GAATTATTTCATGGAGTTCT+TGG | 0.305159 | 2_4:+24411574 | Msa0322110:CDS |
| GAGGATCCTAAGGTTGGATT+TGG | 0.309767 | 2_4:+24409804 | Msa0322110:CDS |
| ACTATGTCGTTTACCGTTGA+TGG | 0.318033 | 2_4:-24409600 | None:intergenic |
| CCAGGTGATAGAATCATTCT+TGG | 0.329695 | 2_4:-24414488 | None:intergenic |
| AACGTGGTATGGTTATTATT+AGG | 0.338462 | 2_4:-24409404 | None:intergenic |
| GAAGATCTCCAATTATTTAT+GGG | 0.349964 | 2_4:-24413025 | None:intergenic |
| GAAGAGTGGACAAACCATTT+TGG | 0.351682 | 2_4:+24414419 | Msa0322110:CDS |
| CTCTCTAATGCTGGTATTAG+TGG | 0.355144 | 2_4:+24409945 | Msa0322110:CDS |
| AATTACTAGTGTTCATCAAT+TGG | 0.364831 | 2_4:+24409992 | Msa0322110:CDS |
| AACAATTCGGAATTATTTCA+TGG | 0.370002 | 2_4:+24411565 | Msa0322110:CDS |
| ATGTTGGAGGGGAACAACTA+TGG | 0.370599 | 2_4:+24409838 | Msa0322110:CDS |
| AAAATAGAGAAAGGAGTGTT+TGG | 0.381011 | 2_4:-24409308 | None:intergenic |
| AATGTTAATGATGGTGTTGT+TGG | 0.395744 | 2_4:+24409768 | Msa0322110:CDS |
| CGAATTGTTCTCTTTAGAAC+AGG | 0.402588 | 2_4:-24411551 | None:intergenic |
| AGTGGACAAACCTTTCGTTA+TGG | 0.403161 | 2_4:+24409963 | Msa0322110:CDS |
| AGAATGAAGTATATTGGAAA+AGG | 0.406936 | 2_4:-24409381 | None:intergenic |
| AAAAGTGTACGTACCCTCTT+TGG | 0.410686 | 2_4:-24411652 | None:intergenic |
| TTGTATGAAACACTTGAGTA+TGG | 0.412739 | 2_4:+24409870 | Msa0322110:CDS |
| CTCTTCCTGTGTGCTGTAGT+GGG | 0.416739 | 2_4:-24414402 | None:intergenic |
| TTCTATGATGGTCGGCTAAA+GGG | 0.423621 | 2_4:-24413054 | None:intergenic |
| GATGGTTGGAACACTGCTGC+TGG | 0.429043 | 2_4:-24409582 | None:intergenic |
| AGATAATCAGTCCAAGAAAC+AGG | 0.436827 | 2_4:-24409900 | None:intergenic |
| AGCTTCAATCACAAGGGCTA+TGG | 0.445392 | 2_4:+24413584 | Msa0322110:CDS |
| GATGATATCTTCTATGCTGT+TGG | 0.447156 | 2_4:+24414272 | Msa0322110:CDS |
| TTTGGATACTATGTTGATGT+TGG | 0.451809 | 2_4:+24409822 | Msa0322110:CDS |
| ACTCTTCCTGTGTGCTGTAG+TGG | 0.461612 | 2_4:-24414403 | None:intergenic |
| ATCACTTGAAGCTAGTTCAA+TGG | 0.467851 | 2_4:-24409535 | None:intergenic |
| CAGGGATATAGTTCAGTCCT+TGG | 0.468154 | 2_4:-24413495 | None:intergenic |
| TATCTTTACTTGACTATTGG+AGG | 0.470480 | 2_4:+24409918 | Msa0322110:CDS |
| CCTCTTGCAGCTATAAGAAA+AGG | 0.470883 | 2_4:-24409657 | None:intergenic |
| ACTTACTTGTTTCTATTCAT+GGG | 0.474021 | 2_4:-24413730 | None:intergenic |
| AAGATATCATCCTCATCATC+TGG | 0.474540 | 2_4:-24414260 | None:intergenic |
| ATTCTATGATGGTCGGCTAA+AGG | 0.477868 | 2_4:-24413055 | None:intergenic |
| TAGTGATGATTTCCATTGCT+CGG | 0.478096 | 2_4:-24409448 | None:intergenic |
| ATTGGATTATTTGGAAGGAA+TGG | 0.480338 | 2_4:+24412985 | Msa0322110:CDS |
| TAGTATCCAAATCCAACCTT+AGG | 0.485929 | 2_4:-24409810 | None:intergenic |
| AGAGAAAGGAGTGTTTGGTT+TGG | 0.485938 | 2_4:-24409303 | None:intergenic |
| TGGCAAATTCCAAGCAATAG+AGG | 0.487424 | 2_4:-24413105 | None:intergenic |
| GAATGAAGTATATTGGAAAA+GGG | 0.490860 | 2_4:-24409380 | None:intergenic |
| TTCCCTTGTAACTCAACATA+CGG | 0.494468 | 2_4:+24413081 | Msa0322110:CDS |
| TGATGAACACTAGTAATTTG+AGG | 0.495706 | 2_4:-24409987 | None:intergenic |
| CTTATAGCTGCAAGAGGACA+AGG | 0.497305 | 2_4:+24409663 | Msa0322110:CDS |
| CATTACCACAGGACCTGTCT+TGG | 0.498772 | 2_4:+24413702 | Msa0322110:CDS |
| GGTTGATATTAAACGTGGTA+TGG | 0.500255 | 2_4:-24409415 | None:intergenic |
| AGTGCATTGGATTATTTGGA+AGG | 0.508553 | 2_4:+24412980 | Msa0322110:CDS |
| GTACGTACCCTCTTTGGTGC+TGG | 0.509757 | 2_4:-24411646 | None:intergenic |
| TATGGGATGTTCCTCATCCA+TGG | 0.513254 | 2_4:+24413602 | Msa0322110:CDS |
| ACATACGGTCCTCTATTGCT+TGG | 0.523887 | 2_4:+24413096 | Msa0322110:CDS |
| GCTTCAATCACAAGGGCTAT+GGG | 0.524238 | 2_4:+24413585 | Msa0322110:CDS |
| GGTGTTGTTGTTGACATGAA+AGG | 0.527755 | 2_4:+24409720 | Msa0322110:CDS |
| GGACCGTATGTTGAGTTACA+AGG | 0.530231 | 2_4:-24413084 | None:intergenic |
| ATCTTTACTTGACTATTGGA+GGG | 0.531975 | 2_4:+24409919 | Msa0322110:CDS |
| TTCATGGGATAAACCAAGAC+AGG | 0.538621 | 2_4:-24413715 | None:intergenic |
| GATACTATGTTGATGTTGGA+GGG | 0.539216 | 2_4:+24409826 | Msa0322110:CDS |
| GTGTTGTTGTTGACATGAAA+GGG | 0.541577 | 2_4:+24409721 | Msa0322110:CDS |
| CCAAGAATGATTCTATCACC+TGG | 0.543424 | 2_4:+24414488 | Msa0322110:CDS |
| TTCTTGAATAGAGTCAGAAG+TGG | 0.544445 | 2_4:+24413553 | Msa0322110:CDS |
| CAAGGGAAAGTATTCTATGA+TGG | 0.544620 | 2_4:-24413066 | None:intergenic |
| TTATTTCATGGAGTTCTTGG+AGG | 0.545601 | 2_4:+24411577 | Msa0322110:CDS |
| TTGTTGAAGATTCTTTGTCC+AGG | 0.547679 | 2_4:-24414506 | None:intergenic |
| GGATACTATGTTGATGTTGG+AGG | 0.550954 | 2_4:+24409825 | Msa0322110:CDS |
| CAAGGACTGAACTATATCCC+TGG | 0.552415 | 2_4:+24413496 | Msa0322110:CDS |
| CTGTTCTAAAGAGAACAATT+CGG | 0.554065 | 2_4:+24411552 | Msa0322110:CDS |
| GGTATAAACATATTAAGCCA+TGG | 0.558758 | 2_4:-24413619 | None:intergenic |
| TGCCATAGCTTGTCCTCGTG+TGG | 0.560100 | 2_4:-24409691 | None:intergenic |
| GACAATTTGGAATTATAACA+AGG | 0.561322 | 2_4:+24411605 | Msa0322110:CDS |
| ATGGTTGGAACACTGCTGCT+GGG | 0.566755 | 2_4:-24409581 | None:intergenic |
| TGTCGTTTACCGTTGATGGT+TGG | 0.568467 | 2_4:-24409596 | None:intergenic |
| GAACGGTTAATCTCAATGAA+AGG | 0.571059 | 2_4:+24412947 | Msa0322110:CDS |
| TGCGTTGAGAGAATTAATAT+AGG | 0.572110 | 2_4:-24409334 | None:intergenic |
| GGAGGGACACTCTCTAATGC+TGG | 0.573132 | 2_4:+24409936 | Msa0322110:CDS |
| AACATATTAAGCCATGGATG+AGG | 0.575581 | 2_4:-24413613 | None:intergenic |
| AGCAGTGTTCCAACCATCAA+CGG | 0.592026 | 2_4:+24409587 | Msa0322110:CDS |
| GAGTTGAAGCTTCAATCACA+AGG | 0.592301 | 2_4:+24413577 | Msa0322110:CDS |
| ACTACAGCACACAGGAAGAG+TGG | 0.593070 | 2_4:+24414405 | Msa0322110:CDS |
| CCTACGGTTGATATTAAACG+TGG | 0.599631 | 2_4:-24409420 | None:intergenic |
| TTCTGAAAACAATGTGAACA+AGG | 0.599954 | 2_4:+24413144 | Msa0322110:CDS |
| AGCAACAATACCAGATGATG+AGG | 0.606041 | 2_4:+24414250 | Msa0322110:CDS |
| GGAAAGTATTCTATGATGGT+CGG | 0.607953 | 2_4:-24413062 | None:intergenic |
| TCTTGAGCCAGCACCAAAGA+GGG | 0.608805 | 2_4:+24411639 | Msa0322110:CDS |
| TCTTCCTGTGTGCTGTAGTG+GGG | 0.609971 | 2_4:-24414401 | None:intergenic |
| TTCCACACGAGGACAAGCTA+TGG | 0.612982 | 2_4:+24409689 | Msa0322110:CDS |
| ACAATTTGGAATTATAACAA+GGG | 0.614455 | 2_4:+24411606 | Msa0322110:CDS |
| CTCTTGAGCCAGCACCAAAG+AGG | 0.621715 | 2_4:+24411638 | Msa0322110:CDS |
| CCGTAGGTAAAACCGAGCAA+TGG | 0.627493 | 2_4:+24409436 | Msa0322110:CDS |
| GACCGTATGTTGAGTTACAA+GGG | 0.634995 | 2_4:-24413083 | None:intergenic |
| AATTTGAGGACCATAACGAA+AGG | 0.636962 | 2_4:-24409973 | None:intergenic |
| GGACAAGCTATGGCACGTGA+TGG | 0.637248 | 2_4:+24409699 | Msa0322110:CDS |
| ATACTATGTTGATGTTGGAG+GGG | 0.660327 | 2_4:+24409827 | Msa0322110:CDS |
| ATAAACCAAGACAGGTCCTG+TGG | 0.671706 | 2_4:-24413707 | None:intergenic |
| CTGCTGGGAATTCATGTACG+AGG | 0.686402 | 2_4:-24409566 | None:intergenic |
| CCACGTTTAATATCAACCGT+AGG | 0.694085 | 2_4:+24409420 | Msa0322110:CDS |
| TCTTCCCCACTACAGCACAC+AGG | 0.695759 | 2_4:+24414397 | Msa0322110:CDS |
| GGACAAGGTCATTCCACACG+AGG | 0.715309 | 2_4:+24409678 | Msa0322110:CDS |
| AGTTGAAGCTTCAATCACAA+GGG | 0.722424 | 2_4:+24413578 | Msa0322110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAAATGTTAATGA+TGG | + | chr2_4:24409759-24409778 | Msa0322110:CDS | 10.0% |
| !! | ATAAAAAAAAAACATATGTT+AGG | + | chr2_4:24410792-24410811 | Msa0322110:intron | 10.0% |
| !! | TTTATATATGATAAAAGATT+TGG | + | chr2_4:24410834-24410853 | Msa0322110:intron | 10.0% |
| !!! | TTAAATGTTTTTTTAATCTT+AGG | - | chr2_4:24411921-24411940 | None:intergenic | 10.0% |
| !!! | AATTTAATTTTTTTTTCAGA+TGG | + | chr2_4:24414213-24414232 | Msa0322110:intron | 10.0% |
| !!! | ATTTAATTTTTTTTTCAGAT+GGG | + | chr2_4:24414214-24414233 | Msa0322110:intron | 10.0% |
| !! | AATAAAAGAATGAATTTAGA+TGG | - | chr2_4:24410055-24410074 | None:intergenic | 15.0% |
| !!! | ATATCAAATTACTTTTTTGA+GGG | + | chr2_4:24410217-24410236 | Msa0322110:intron | 15.0% |
| !!! | AATTCCAATTTTTTTTTTGT+GGG | - | chr2_4:24410323-24410342 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAGTTTATTTAT+CGG | + | chr2_4:24410375-24410394 | Msa0322110:intron | 15.0% |
| !!! | TCTTTTATCATATATAAAAC+AGG | - | chr2_4:24410832-24410851 | None:intergenic | 15.0% |
| !!! | AACAAAAATTTTAAAAGTAG+AGG | - | chr2_4:24410872-24410891 | None:intergenic | 15.0% |
| !!! | AATTTTTCAAAAACAAGAAA+GGG | - | chr2_4:24411033-24411052 | None:intergenic | 15.0% |
| !! | AGAAAATATTAATCAAGAAT+TGG | - | chr2_4:24411097-24411116 | None:intergenic | 15.0% |
| !! | ATTTGTTCAAGTATATATAA+AGG | - | chr2_4:24411380-24411399 | None:intergenic | 15.0% |
| !! | TATATATACTTGAACAAATA+AGG | + | chr2_4:24411381-24411400 | Msa0322110:intron | 15.0% |
| !!! | CTTAATCAAGTTTTAATTTT+TGG | + | chr2_4:24411499-24411518 | Msa0322110:intron | 15.0% |
| !!! | TTAATTTTTGGTTATTTTTC+AGG | + | chr2_4:24411511-24411530 | Msa0322110:intron | 15.0% |
| !!! | TATAGTAATCAGATATTTTA+AGG | + | chr2_4:24412247-24412266 | Msa0322110:intron | 15.0% |
| !!! | ATAGTAATCAGATATTTTAA+GGG | + | chr2_4:24412248-24412267 | Msa0322110:intron | 15.0% |
| !! | ATAAATAAAAACTCAATTGT+TGG | + | chr2_4:24412520-24412539 | Msa0322110:intron | 15.0% |
| !! | TAAATAAAAACTCAATTGTT+GGG | + | chr2_4:24412521-24412540 | Msa0322110:intron | 15.0% |
| !! | ATTAAGTTTATTTCAACTAT+TGG | - | chr2_4:24412713-24412732 | None:intergenic | 15.0% |
| !!! | AATATTTTTTATGTTTGTGT+AGG | + | chr2_4:24413456-24413475 | Msa0322110:intron | 15.0% |
| !!! | GTTTTTCTCAAATAATTTAT+TGG | + | chr2_4:24413823-24413842 | Msa0322110:intron | 15.0% |
| !!! | AGAGTTTTAAAGAAAATAAA+AGG | - | chr2_4:24414130-24414149 | None:intergenic | 15.0% |
| !!! | TTACAAATTTATATAATGGA+AGG | - | chr2_4:24414168-24414187 | None:intergenic | 15.0% |
| !! | AAAAATTAAAGCTAATTAAG+AGG | + | chr2_4:24414186-24414205 | Msa0322110:intron | 15.0% |
| !!! | AAAAAAGTTTTCCATTTTTT+AGG | - | chr2_4:24414446-24414465 | None:intergenic | 15.0% |
| !! | TGTTCTTATCAGTTTAATAT+CGG | + | chr2_4:24410170-24410189 | Msa0322110:intron | 20.0% |
| !!! | GATATCAAATTACTTTTTTG+AGG | + | chr2_4:24410216-24410235 | Msa0322110:intron | 20.0% |
| !!! | TATCAAATTACTTTTTTGAG+GGG | + | chr2_4:24410218-24410237 | Msa0322110:intron | 20.0% |
| !!! | GAATTCCAATTTTTTTTTTG+TGG | - | chr2_4:24410324-24410343 | None:intergenic | 20.0% |
| !!! | GAAACATTATGTAAAAGTTT+TGG | - | chr2_4:24410541-24410560 | None:intergenic | 20.0% |
| !! | TTACATAATGTTTCTTTCTT+TGG | + | chr2_4:24410547-24410566 | Msa0322110:intron | 20.0% |
| !!! | ACTAGACCAAAAATAAATTT+TGG | - | chr2_4:24410652-24410671 | None:intergenic | 20.0% |
| !! | AATGGTTTATCTAAATCATA+CGG | - | chr2_4:24410683-24410702 | None:intergenic | 20.0% |
| !! | TTTAGATAAACCATTTCAAA+TGG | + | chr2_4:24410688-24410707 | Msa0322110:intron | 20.0% |
| !! | TTTATAAAAAGAAGCTAGAA+AGG | - | chr2_4:24410777-24410796 | None:intergenic | 20.0% |
| !! | AAATAGTGTAATACAGTTAT+AGG | - | chr2_4:24410935-24410954 | None:intergenic | 20.0% |
| !!! | GAATTTTTCAAAAACAAGAA+AGG | - | chr2_4:24411034-24411053 | None:intergenic | 20.0% |
| !! | CTATTGAGTATACATATTAT+TGG | + | chr2_4:24411131-24411150 | Msa0322110:intron | 20.0% |
| !!! | ACAATTTGGAATTATAACAA+GGG | + | chr2_4:24411606-24411625 | Msa0322110:CDS | 20.0% |
| !!! | TAAAGCTTGATTTTGATATA+TGG | - | chr2_4:24411778-24411797 | None:intergenic | 20.0% |
| !! | CTATTCTCATATATAATTCT+TGG | - | chr2_4:24411873-24411892 | None:intergenic | 20.0% |
| !! | TCTGTTTGAAAAAATAAATG+TGG | + | chr2_4:24411945-24411964 | Msa0322110:intron | 20.0% |
| !! | CTTACAATTATTATTGTCAA+AGG | - | chr2_4:24411976-24411995 | None:intergenic | 20.0% |
| !! | ATATCTGATTACTATACATA+AGG | - | chr2_4:24412243-24412262 | None:intergenic | 20.0% |
| !! | ATCACTATAATAACATAACA+TGG | + | chr2_4:24412793-24412812 | Msa0322110:intron | 20.0% |
| !!! | ATGGTGAATTTCATTTTTAT+TGG | + | chr2_4:24412867-24412886 | Msa0322110:intron | 20.0% |
| !! | TTAAAGTGGTATTAAATAGT+AGG | - | chr2_4:24413206-24413225 | None:intergenic | 20.0% |
| !! | TTCAAATCGTTATGAAATTT+AGG | + | chr2_4:24413323-24413342 | Msa0322110:intron | 20.0% |
| !!! | TTTTTTCATAATGAAATCCA+GGG | - | chr2_4:24413516-24413535 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATAATGAAATCC+AGG | - | chr2_4:24413517-24413536 | None:intergenic | 20.0% |
| !!! | CGAATCTTAGATTTTAATTT+AGG | + | chr2_4:24413649-24413668 | Msa0322110:CDS | 20.0% |
| !! | AAATTATTTGAGAAAAACAG+AGG | - | chr2_4:24413821-24413840 | None:intergenic | 20.0% |
| ! | TATAGGAGAAAAATAGAGAA+AGG | - | chr2_4:24409320-24409339 | None:intergenic | 25.0% |
| ! | GAATGAAGTATATTGGAAAA+GGG | - | chr2_4:24409383-24409402 | None:intergenic | 25.0% |
| ! | AGAATGAAGTATATTGGAAA+AGG | - | chr2_4:24409384-24409403 | None:intergenic | 25.0% |
| ! | ATTAGGAGAATGAAGTATAT+TGG | - | chr2_4:24409390-24409409 | None:intergenic | 25.0% |
| !!! | AGATATGTTGGAATTTTTTG+TGG | - | chr2_4:24409490-24409509 | None:intergenic | 25.0% |
| !!! | TATGAGTTTTTGAGATATGT+TGG | - | chr2_4:24409502-24409521 | None:intergenic | 25.0% |
| ! | GATTATCTTTACTTGACTAT+TGG | + | chr2_4:24409915-24409934 | Msa0322110:CDS | 25.0% |
| ! | AATTACTAGTGTTCATCAAT+TGG | + | chr2_4:24409992-24410011 | Msa0322110:CDS | 25.0% |
| !!! | TCAATGTTCCATTTTTATGT+TGG | + | chr2_4:24410087-24410106 | Msa0322110:intron | 25.0% |
| ! | GTTGAAAACCAACATAAAAA+TGG | - | chr2_4:24410098-24410117 | None:intergenic | 25.0% |
| !!! | TTTTATGTTGGTTTTCAACT+TGG | + | chr2_4:24410099-24410118 | Msa0322110:intron | 25.0% |
| !! | TATATACTTTCTCGACTTTT+TGG | + | chr2_4:24410127-24410146 | Msa0322110:intron | 25.0% |
| !!! | ATCAAATTACTTTTTTGAGG+GGG | + | chr2_4:24410219-24410238 | Msa0322110:intron | 25.0% |
| !!! | CTCCGATAAATAAACTTTTT+TGG | - | chr2_4:24410380-24410399 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTATGAAGTGTTT+TGG | + | chr2_4:24410623-24410642 | Msa0322110:intron | 25.0% |
| !!! | AGTTTGTTATGAAGTGTTTT+GGG | + | chr2_4:24410624-24410643 | Msa0322110:intron | 25.0% |
| !!! | GTTATTTTCTCCATTTGAAA+TGG | - | chr2_4:24410701-24410720 | None:intergenic | 25.0% |
| ! | ATTTAACAATGTTGTTGTCT+TGG | + | chr2_4:24410896-24410915 | Msa0322110:intron | 25.0% |
| ! | TTTAACAATGTTGTTGTCTT+GGG | + | chr2_4:24410897-24410916 | Msa0322110:intron | 25.0% |
| ! | TATTTACTACTACCAATTTG+TGG | + | chr2_4:24410950-24410969 | Msa0322110:intron | 25.0% |
| ! | TGACCTTAAAATTATAGACA+TGG | - | chr2_4:24411158-24411177 | None:intergenic | 25.0% |
| ! | TATTCTTTAACAAACTCATG+TGG | - | chr2_4:24411236-24411255 | None:intergenic | 25.0% |
| !!! | TTTGGTTATTTTTCAGGAAA+AGG | + | chr2_4:24411517-24411536 | Msa0322110:intron | 25.0% |
| ! | AACAATTCGGAATTATTTCA+TGG | + | chr2_4:24411565-24411584 | Msa0322110:CDS | 25.0% |
| !! | GACAATTTGGAATTATAACA+AGG | + | chr2_4:24411605-24411624 | Msa0322110:CDS | 25.0% |
| ! | AGAATTGGGATTATTATGAA+TGG | - | chr2_4:24411733-24411752 | None:intergenic | 25.0% |
| ! | AATAAAAACATGTCATGCAT+TGG | - | chr2_4:24412030-24412049 | None:intergenic | 25.0% |
| ! | CTATGTATTGTAGTTACAAT+AGG | + | chr2_4:24412159-24412178 | Msa0322110:intron | 25.0% |
| ! | ATAGGCTTCTACAAATAATT+TGG | + | chr2_4:24412177-24412196 | Msa0322110:intron | 25.0% |
| ! | CATTTAATGATTGATGTATC+TGG | - | chr2_4:24412585-24412604 | None:intergenic | 25.0% |
| ! | TTACTAATAATGAAGACTAG+AGG | + | chr2_4:24412623-24412642 | Msa0322110:intron | 25.0% |
| ! | TACTAATAATGAAGACTAGA+GGG | + | chr2_4:24412624-24412643 | Msa0322110:intron | 25.0% |
| ! | GCAATGTATATATCAACTAA+TGG | + | chr2_4:24412848-24412867 | Msa0322110:intron | 25.0% |
| !!! | TGAATTTCATTTTTATTGGC+AGG | + | chr2_4:24412871-24412890 | Msa0322110:intron | 25.0% |
| !! | ATTTTTATTGGCAGGTTAAA+TGG | + | chr2_4:24412879-24412898 | Msa0322110:intron | 25.0% |
| !! | TTTTTATTGGCAGGTTAAAT+GGG | + | chr2_4:24412880-24412899 | Msa0322110:intron | 25.0% |
| ! | AAATAGTGCATTGGATTATT+TGG | + | chr2_4:24412976-24412995 | Msa0322110:CDS | 25.0% |
| ! | GAAGATCTCCAATTATTTAT+GGG | - | chr2_4:24413028-24413047 | None:intergenic | 25.0% |
| ! | AGAAGATCTCCAATTATTTA+TGG | - | chr2_4:24413029-24413048 | None:intergenic | 25.0% |
| ! | AGAATGGTCATCATAATATT+TGG | - | chr2_4:24413128-24413147 | None:intergenic | 25.0% |
| ! | ATCAACGAGTAAAATTAAAG+TGG | - | chr2_4:24413220-24413239 | None:intergenic | 25.0% |
| !! | TACCCTTTTCATAAACTAAA+CGG | + | chr2_4:24413273-24413292 | Msa0322110:intron | 25.0% |
| !! | TTCCGTTTAGTTTATGAAAA+GGG | - | chr2_4:24413278-24413297 | None:intergenic | 25.0% |
| !! | TTTCCGTTTAGTTTATGAAA+AGG | - | chr2_4:24413279-24413298 | None:intergenic | 25.0% |
| ! | GAAAAATATTGAATTAGCGA+CGG | - | chr2_4:24413368-24413387 | None:intergenic | 25.0% |
| !!! | AAATCTAAGATTCGAGATTT+TGG | - | chr2_4:24413643-24413662 | None:intergenic | 25.0% |
| !!! | ACTTACTTGTTTCTATTCAT+GGG | - | chr2_4:24413733-24413752 | None:intergenic | 25.0% |
| ! | AGTAAGTCTTTAATTAACCT+TGG | + | chr2_4:24413746-24413765 | Msa0322110:intron | 25.0% |
| ! | AAGAAAAATAATGTGAACCA+AGG | - | chr2_4:24413766-24413785 | None:intergenic | 25.0% |
| !! | TAAATATTTTTCGCATCGTT+TGG | - | chr2_4:24414050-24414069 | None:intergenic | 25.0% |
| !! | AAAATAGAGAAAGGAGTGTT+TGG | - | chr2_4:24409311-24409330 | None:intergenic | 30.0% |
| TGCGTTGAGAGAATTAATAT+AGG | - | chr2_4:24409337-24409356 | None:intergenic | 30.0% | |
| AACGTGGTATGGTTATTATT+AGG | - | chr2_4:24409407-24409426 | None:intergenic | 30.0% | |
| !! | AATGTTAATGATGGTGTTGT+TGG | + | chr2_4:24409768-24409787 | Msa0322110:CDS | 30.0% |
| ! | TGTTGGAATTAAGGTTTTTG+AGG | + | chr2_4:24409785-24409804 | Msa0322110:CDS | 30.0% |
| TTTGGATACTATGTTGATGT+TGG | + | chr2_4:24409822-24409841 | Msa0322110:CDS | 30.0% | |
| TTGTATGAAACACTTGAGTA+TGG | + | chr2_4:24409870-24409889 | Msa0322110:CDS | 30.0% | |
| TATCTTTACTTGACTATTGG+AGG | + | chr2_4:24409918-24409937 | Msa0322110:CDS | 30.0% | |
| ATCTTTACTTGACTATTGGA+GGG | + | chr2_4:24409919-24409938 | Msa0322110:CDS | 30.0% | |
| TGATGAACACTAGTAATTTG+AGG | - | chr2_4:24409990-24410009 | None:intergenic | 30.0% | |
| TCAGTTTAATATCGGATATG+TGG | + | chr2_4:24410178-24410197 | Msa0322110:intron | 30.0% | |
| GCATCCCACAAAAAAAAAAT+TGG | + | chr2_4:24410316-24410335 | Msa0322110:intron | 30.0% | |
| GTTTATTTATCGGAGTACAA+CGG | + | chr2_4:24410385-24410404 | Msa0322110:intron | 30.0% | |
| TTTATTTATCGGAGTACAAC+GGG | + | chr2_4:24410386-24410405 | Msa0322110:intron | 30.0% | |
| !!! | TTGGTGTTTTGTTTTTTCCT+CGG | - | chr2_4:24410522-24410541 | None:intergenic | 30.0% |
| !!! | GTTTGTTATGAAGTGTTTTG+GGG | + | chr2_4:24410625-24410644 | Msa0322110:intron | 30.0% |
| !! | TGGGGACCAAAATTTATTTT+TGG | + | chr2_4:24410643-24410662 | Msa0322110:intron | 30.0% |
| TACCAATTTGTGGTTGTTAA+GGG | + | chr2_4:24410960-24410979 | Msa0322110:intron | 30.0% | |
| AGGGAGTCTTTATAAGTTAT+AGG | + | chr2_4:24410979-24410998 | Msa0322110:intron | 30.0% | |
| ! | GGTCCATGTCTATAATTTTA+AGG | + | chr2_4:24411152-24411171 | Msa0322110:intron | 30.0% |
| !! | CTGTTCTAAAGAGAACAATT+CGG | + | chr2_4:24411552-24411571 | Msa0322110:CDS | 30.0% |
| GAATTATTTCATGGAGTTCT+TGG | + | chr2_4:24411574-24411593 | Msa0322110:CDS | 30.0% | |
| TTGGGATTATTATGAATGGT+TGG | - | chr2_4:24411729-24411748 | None:intergenic | 30.0% | |
| TATAGTCTTCTAACACATGA+AGG | + | chr2_4:24412055-24412074 | Msa0322110:intron | 30.0% | |
| ATAGTCTTCTAACACATGAA+GGG | + | chr2_4:24412056-24412075 | Msa0322110:intron | 30.0% | |
| GATTACTATACATAAGGATG+AGG | - | chr2_4:24412237-24412256 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTCAAGACACATG+TGG | - | chr2_4:24412465-24412484 | None:intergenic | 30.0% |
| CATTGAATAACTGATGAATC+TGG | + | chr2_4:24412546-24412565 | Msa0322110:intron | 30.0% | |
| ! | GGATCAAGATCAAATGATTT+TGG | - | chr2_4:24412692-24412711 | None:intergenic | 30.0% |
| ! | TTTTTACCAAAGACCAAGAA+CGG | + | chr2_4:24412930-24412949 | Msa0322110:CDS | 30.0% |
| AGGAAACAAAAATAGTGCAT+TGG | + | chr2_4:24412967-24412986 | Msa0322110:CDS | 30.0% | |
| ATTGGATTATTTGGAAGGAA+TGG | + | chr2_4:24412985-24413004 | Msa0322110:CDS | 30.0% | |
| !!! | GGAATGGTTTTAATGAATCA+AGG | + | chr2_4:24413001-24413020 | Msa0322110:CDS | 30.0% |
| ATCAAGGACCCATAAATAAT+TGG | + | chr2_4:24413017-24413036 | Msa0322110:CDS | 30.0% | |
| ! | TGTTCACATTGTTTTCAGAA+TGG | - | chr2_4:24413144-24413163 | None:intergenic | 30.0% |
| ! | TTCTGAAAACAATGTGAACA+AGG | + | chr2_4:24413144-24413163 | Msa0322110:CDS | 30.0% |
| GGTATAAACATATTAAGCCA+TGG | - | chr2_4:24413622-24413641 | None:intergenic | 30.0% | |
| !! | GACTTACTTGTTTCTATTCA+TGG | - | chr2_4:24413734-24413753 | None:intergenic | 30.0% |
| GTCGATCTCAATTCATTATT+CGG | + | chr2_4:24413965-24413984 | Msa0322110:intron | 30.0% | |
| ACTTAGCAAGCTATGTTTAA+AGG | - | chr2_4:24414098-24414117 | None:intergenic | 30.0% | |
| ! | TTGCAATTTTGTAATCATGC+TGG | + | chr2_4:24414356-24414375 | Msa0322110:CDS | 30.0% |
| ! | TGCAATTTTGTAATCATGCT+GGG | + | chr2_4:24414357-24414376 | Msa0322110:CDS | 30.0% |
| !! | ACCATTTTGGTCCTAAAAAA+TGG | + | chr2_4:24414432-24414451 | Msa0322110:CDS | 30.0% |
| !!! | TCCATTTTTTAGGACCAAAA+TGG | - | chr2_4:24414436-24414455 | None:intergenic | 30.0% |
| ! | GGTTGATATTAAACGTGGTA+TGG | - | chr2_4:24409418-24409437 | None:intergenic | 35.0% |
| TAGTGATGATTTCCATTGCT+CGG | - | chr2_4:24409451-24409470 | None:intergenic | 35.0% | |
| ATCACTTGAAGCTAGTTCAA+TGG | - | chr2_4:24409538-24409557 | None:intergenic | 35.0% | |
| ! | GAACTAGCTTCAAGTGATTA+TGG | + | chr2_4:24409540-24409559 | Msa0322110:CDS | 35.0% |
| ! | GTGTTGTTGTTGACATGAAA+GGG | + | chr2_4:24409721-24409740 | Msa0322110:CDS | 35.0% |
| !! | TGATGGTGTTGTTGGAATTA+AGG | + | chr2_4:24409776-24409795 | Msa0322110:CDS | 35.0% |
| !! | TAAGGTTTTTGAGGATCCTA+AGG | + | chr2_4:24409794-24409813 | Msa0322110:CDS | 35.0% |
| TAGTATCCAAATCCAACCTT+AGG | - | chr2_4:24409813-24409832 | None:intergenic | 35.0% | |
| GATACTATGTTGATGTTGGA+GGG | + | chr2_4:24409826-24409845 | Msa0322110:CDS | 35.0% | |
| ATACTATGTTGATGTTGGAG+GGG | + | chr2_4:24409827-24409846 | Msa0322110:CDS | 35.0% | |
| AGATAATCAGTCCAAGAAAC+AGG | - | chr2_4:24409903-24409922 | None:intergenic | 35.0% | |
| AATTTGAGGACCATAACGAA+AGG | - | chr2_4:24409976-24409995 | None:intergenic | 35.0% | |
| CATCAATTGGATGTTGTTAC+TGG | + | chr2_4:24410005-24410024 | Msa0322110:CDS | 35.0% | |
| ATATCGGATATGTGGTCAAA+TGG | + | chr2_4:24410186-24410205 | Msa0322110:intron | 35.0% | |
| TATCGGATATGTGGTCAAAT+GGG | + | chr2_4:24410187-24410206 | Msa0322110:intron | 35.0% | |
| CTTTCGAGCATATGATTTAG+TGG | - | chr2_4:24410499-24410518 | None:intergenic | 35.0% | |
| ! | ACAATCTTCCATGTGCATTT+TGG | + | chr2_4:24410719-24410738 | Msa0322110:intron | 35.0% |
| CTTTATATGTCACTGTGCAT+TGG | - | chr2_4:24410749-24410768 | None:intergenic | 35.0% | |
| CAATGCACAGTGACATATAA+AGG | + | chr2_4:24410747-24410766 | Msa0322110:intron | 35.0% | |
| CTACCAATTTGTGGTTGTTA+AGG | + | chr2_4:24410959-24410978 | Msa0322110:intron | 35.0% | |
| !! | TTGAGTTGTTAAGCCTTTTG+GGG | - | chr2_4:24411452-24411471 | None:intergenic | 35.0% |
| !! | GTTGAGTTGTTAAGCCTTTT+GGG | - | chr2_4:24411453-24411472 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGTTAAGCCTTT+TGG | - | chr2_4:24411454-24411473 | None:intergenic | 35.0% |
| !! | CGAATTGTTCTCTTTAGAAC+AGG | - | chr2_4:24411554-24411573 | None:intergenic | 35.0% |
| TTATTTCATGGAGTTCTTGG+AGG | + | chr2_4:24411577-24411596 | Msa0322110:CDS | 35.0% | |
| ATGTGACAACGTGAAGAATT+GGG | - | chr2_4:24411747-24411766 | None:intergenic | 35.0% | |
| AATGTGACAACGTGAAGAAT+TGG | - | chr2_4:24411748-24411767 | None:intergenic | 35.0% | |
| ACTAACACAGTGTACAATGA+CGG | - | chr2_4:24411834-24411853 | None:intergenic | 35.0% | |
| ATGAGAATAGTTATAGCCAC+AGG | + | chr2_4:24411883-24411902 | Msa0322110:intron | 35.0% | |
| CATGTGTTAGAAGACTATAG+TGG | - | chr2_4:24412054-24412073 | None:intergenic | 35.0% | |
| TAGTCTTCTAACACATGAAG+GGG | + | chr2_4:24412057-24412076 | Msa0322110:intron | 35.0% | |
| TGTGGCTAAAAAATAGGAAG+TGG | + | chr2_4:24412412-24412431 | Msa0322110:intron | 35.0% | |
| TCATTGAGATTAACCGTTCT+TGG | - | chr2_4:24412946-24412965 | None:intergenic | 35.0% | |
| GAACGGTTAATCTCAATGAA+AGG | + | chr2_4:24412947-24412966 | Msa0322110:CDS | 35.0% | |
| AGTGCATTGGATTATTTGGA+AGG | + | chr2_4:24412980-24412999 | Msa0322110:CDS | 35.0% | |
| !! | GGAAAGTATTCTATGATGGT+CGG | - | chr2_4:24413065-24413084 | None:intergenic | 35.0% |
| !! | CAAGGGAAAGTATTCTATGA+TGG | - | chr2_4:24413069-24413088 | None:intergenic | 35.0% |
| TTCCCTTGTAACTCAACATA+CGG | + | chr2_4:24413081-24413100 | Msa0322110:CDS | 35.0% | |
| !! | GAAATTCAAGTTTTGCTCCA+AGG | + | chr2_4:24413478-24413497 | Msa0322110:CDS | 35.0% |
| TTCTTGAATAGAGTCAGAAG+TGG | + | chr2_4:24413553-24413572 | Msa0322110:CDS | 35.0% | |
| AGTTGAAGCTTCAATCACAA+GGG | + | chr2_4:24413578-24413597 | Msa0322110:CDS | 35.0% | |
| AACATATTAAGCCATGGATG+AGG | - | chr2_4:24413616-24413635 | None:intergenic | 35.0% | |
| CAAAAACGTAACATTACCAC+AGG | + | chr2_4:24413691-24413710 | Msa0322110:CDS | 35.0% | |
| TGTAAAATTAGTCACACCGT+CGG | + | chr2_4:24413943-24413962 | Msa0322110:intron | 35.0% | |
| AAGATATCATCCTCATCATC+TGG | - | chr2_4:24414263-24414282 | None:intergenic | 35.0% | |
| GATGATATCTTCTATGCTGT+TGG | + | chr2_4:24414272-24414291 | Msa0322110:CDS | 35.0% | |
| ! | TTGGATTTTTGCACTCAAGT+GGG | + | chr2_4:24414291-24414310 | Msa0322110:CDS | 35.0% |
| ! | ACTCAAGTGGGTTTGATAAT+TGG | + | chr2_4:24414303-24414322 | Msa0322110:CDS | 35.0% |
| TTGTTGAAGATTCTTTGTCC+AGG | - | chr2_4:24414509-24414528 | None:intergenic | 35.0% | |
| !! | AGAGAAAGGAGTGTTTGGTT+TGG | - | chr2_4:24409306-24409325 | None:intergenic | 40.0% |
| ! | CCTACGGTTGATATTAAACG+TGG | - | chr2_4:24409423-24409442 | None:intergenic | 40.0% |
| CCACGTTTAATATCAACCGT+AGG | + | chr2_4:24409420-24409439 | Msa0322110:CDS | 40.0% | |
| ! | GAAGCTAGTTCAATGGCTTT+TGG | - | chr2_4:24409531-24409550 | None:intergenic | 40.0% |
| ! | ACTATGTCGTTTACCGTTGA+TGG | - | chr2_4:24409603-24409622 | None:intergenic | 40.0% |
| CCTCTTGCAGCTATAAGAAA+AGG | - | chr2_4:24409660-24409679 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTATAGCTGCAAG+AGG | + | chr2_4:24409657-24409676 | Msa0322110:CDS | 40.0% |
| !! | GGTGTTGTTGTTGACATGAA+AGG | + | chr2_4:24409720-24409739 | Msa0322110:CDS | 40.0% |
| !! | GTTTTTGAGGATCCTAAGGT+TGG | + | chr2_4:24409798-24409817 | Msa0322110:CDS | 40.0% |
| GGATACTATGTTGATGTTGG+AGG | + | chr2_4:24409825-24409844 | Msa0322110:CDS | 40.0% | |
| CTCTCTAATGCTGGTATTAG+TGG | + | chr2_4:24409945-24409964 | Msa0322110:CDS | 40.0% | |
| AGTGGACAAACCTTTCGTTA+TGG | + | chr2_4:24409963-24409982 | Msa0322110:CDS | 40.0% | |
| !! | CACTTCGATAGCTTGCTATT+GGG | + | chr2_4:24410248-24410267 | Msa0322110:intron | 40.0% |
| GTTCTGCAACCTTTCATAGA+AGG | - | chr2_4:24410474-24410493 | None:intergenic | 40.0% | |
| TTGGAAAGCCAAAATGCACA+TGG | - | chr2_4:24410730-24410749 | None:intergenic | 40.0% | |
| CTCCCTTAACAACCACAAAT+TGG | - | chr2_4:24410965-24410984 | None:intergenic | 40.0% | |
| AGTTAGCAAGTGATTTCCAC+AGG | + | chr2_4:24411005-24411024 | Msa0322110:intron | 40.0% | |
| GTTAGCAAGTGATTTCCACA+GGG | + | chr2_4:24411006-24411025 | Msa0322110:intron | 40.0% | |
| ACTATGTCGACAATGTGAAC+TGG | - | chr2_4:24411069-24411088 | None:intergenic | 40.0% | |
| ! | TGAGTTGTTAAGCCTTTTGG+GGG | - | chr2_4:24411451-24411470 | None:intergenic | 40.0% |
| CTTGGAGGATTAGGACAATT+TGG | + | chr2_4:24411592-24411611 | Msa0322110:CDS | 40.0% | |
| ! | AAAAGTGTACGTACCCTCTT+TGG | - | chr2_4:24411655-24411674 | None:intergenic | 40.0% |
| GGAAGAAGAAGTTAGCTACA+AGG | - | chr2_4:24411708-24411727 | None:intergenic | 40.0% | |
| GTCATTGTACACTGTGTTAG+TGG | + | chr2_4:24411833-24411852 | Msa0322110:intron | 40.0% | |
| TAGGAATCGACATATACCTG+TGG | - | chr2_4:24411902-24411921 | None:intergenic | 40.0% | |
| CTCAAAAACCTTACGCTCTA+CGG | + | chr2_4:24412282-24412301 | Msa0322110:intron | 40.0% | |
| AATAATGACCGTAGAGCGTA+AGG | - | chr2_4:24412293-24412312 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr2_4:24412378-24412397 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr2_4:24412386-24412405 | Msa0322110:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr2_4:24412389-24412408 | Msa0322110:intron | 40.0% | |
| ! | AGGAGGTGTGGCTAAAAAAT+AGG | + | chr2_4:24412406-24412425 | Msa0322110:intron | 40.0% |
| ! | GATTAACCGTTCTTGGTCTT+TGG | - | chr2_4:24412939-24412958 | None:intergenic | 40.0% |
| TTCTATGATGGTCGGCTAAA+GGG | - | chr2_4:24413057-24413076 | None:intergenic | 40.0% | |
| ATTCTATGATGGTCGGCTAA+AGG | - | chr2_4:24413058-24413077 | None:intergenic | 40.0% | |
| GACCGTATGTTGAGTTACAA+GGG | - | chr2_4:24413086-24413105 | None:intergenic | 40.0% | |
| TGGCAAATTCCAAGCAATAG+AGG | - | chr2_4:24413108-24413127 | None:intergenic | 40.0% | |
| GAGTTGAAGCTTCAATCACA+AGG | + | chr2_4:24413577-24413596 | Msa0322110:CDS | 40.0% | |
| TTCATGGGATAAACCAAGAC+AGG | - | chr2_4:24413718-24413737 | None:intergenic | 40.0% | |
| AATGAATTGAGATCGACCGA+CGG | - | chr2_4:24413962-24413981 | None:intergenic | 40.0% | |
| AGCAACAATACCAGATGATG+AGG | + | chr2_4:24414250-24414269 | Msa0322110:CDS | 40.0% | |
| ! | GTTGGATTTTTGCACTCAAG+TGG | + | chr2_4:24414290-24414309 | Msa0322110:CDS | 40.0% |
| ! | GAAGAGTGGACAAACCATTT+TGG | + | chr2_4:24414419-24414438 | Msa0322110:CDS | 40.0% |
| CCAGGTGATAGAATCATTCT+TGG | - | chr2_4:24414491-24414510 | None:intergenic | 40.0% | |
| CCAAGAATGATTCTATCACC+TGG | + | chr2_4:24414488-24414507 | Msa0322110:CDS | 40.0% | |
| ! | CCATTGCTCGGTTTTACCTA+CGG | - | chr2_4:24409439-24409458 | None:intergenic | 45.0% |
| AGCAGTGTTCCAACCATCAA+CGG | + | chr2_4:24409587-24409606 | Msa0322110:CDS | 45.0% | |
| !! | TGTCGTTTACCGTTGATGGT+TGG | - | chr2_4:24409599-24409618 | None:intergenic | 45.0% |
| CTTATAGCTGCAAGAGGACA+AGG | + | chr2_4:24409663-24409682 | Msa0322110:CDS | 45.0% | |
| GAGGATCCTAAGGTTGGATT+TGG | + | chr2_4:24409804-24409823 | Msa0322110:CDS | 45.0% | |
| ATGTTGGAGGGGAACAACTA+TGG | + | chr2_4:24409838-24409857 | Msa0322110:CDS | 45.0% | |
| ! | ATGGACTTGCACCTGTTTCT+TGG | + | chr2_4:24409889-24409908 | Msa0322110:CDS | 45.0% |
| CCAATAGCAAGCTATCGAAG+TGG | - | chr2_4:24410250-24410269 | None:intergenic | 45.0% | |
| !! | CCACTTCGATAGCTTGCTAT+TGG | + | chr2_4:24410247-24410266 | Msa0322110:intron | 45.0% |
| CTCTACGCACCTTCTATGAA+AGG | + | chr2_4:24410462-24410481 | Msa0322110:intron | 45.0% | |
| AATCATATGCTCGAAAGCCG+AGG | + | chr2_4:24410502-24410521 | Msa0322110:intron | 45.0% | |
| AAAACAAGAAAGGGACCCTG+TGG | - | chr2_4:24411024-24411043 | None:intergenic | 45.0% | |
| ! | GAGTTGTTAAGCCTTTTGGG+GGG | - | chr2_4:24411450-24411469 | None:intergenic | 45.0% |
| CATGGAGTTCTTGGAGGATT+AGG | + | chr2_4:24411583-24411602 | Msa0322110:CDS | 45.0% | |
| ! | GTGTACAATGACGGTGCTTT+TGG | - | chr2_4:24411825-24411844 | None:intergenic | 45.0% |
| GGACCGTATGTTGAGTTACA+AGG | - | chr2_4:24413087-24413106 | None:intergenic | 45.0% | |
| ACATACGGTCCTCTATTGCT+TGG | + | chr2_4:24413096-24413115 | Msa0322110:CDS | 45.0% | |
| CAGGGATATAGTTCAGTCCT+TGG | - | chr2_4:24413498-24413517 | None:intergenic | 45.0% | |
| CAAGGACTGAACTATATCCC+TGG | + | chr2_4:24413496-24413515 | Msa0322110:CDS | 45.0% | |
| AGCTTCAATCACAAGGGCTA+TGG | + | chr2_4:24413584-24413603 | Msa0322110:CDS | 45.0% | |
| GCTTCAATCACAAGGGCTAT+GGG | + | chr2_4:24413585-24413604 | Msa0322110:CDS | 45.0% | |
| TATGGGATGTTCCTCATCCA+TGG | + | chr2_4:24413602-24413621 | Msa0322110:CDS | 45.0% | |
| ATAAACCAAGACAGGTCCTG+TGG | - | chr2_4:24413710-24413729 | None:intergenic | 45.0% | |
| !!! | AATTTAAAATATTATAGTTA+AGG | - | chr2_4:24411184-24411203 | None:intergenic | 5.0% |
| !!! | TTATTATAATTTTTAAATAG+TGG | - | chr2_4:24413906-24413925 | None:intergenic | 5.0% |
| !!! | TATAATGAATTTTTTTTTAA+TGG | + | chr2_4:24414006-24414025 | Msa0322110:intron | 5.0% |
| !!! | ATTTTTACAAATTTATATAA+TGG | - | chr2_4:24414172-24414191 | None:intergenic | 5.0% |
| CCGTAGGTAAAACCGAGCAA+TGG | + | chr2_4:24409436-24409455 | Msa0322110:CDS | 50.0% | |
| CTGCTGGGAATTCATGTACG+AGG | - | chr2_4:24409569-24409588 | None:intergenic | 50.0% | |
| ATGGTTGGAACACTGCTGCT+GGG | - | chr2_4:24409584-24409603 | None:intergenic | 50.0% | |
| TTCCACACGAGGACAAGCTA+TGG | + | chr2_4:24409689-24409708 | Msa0322110:CDS | 50.0% | |
| CAACTACTACACCCCCCAAA+AGG | + | chr2_4:24411436-24411455 | Msa0322110:intron | 50.0% | |
| TCTTGAGCCAGCACCAAAGA+GGG | + | chr2_4:24411639-24411658 | Msa0322110:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr2_4:24412394-24412413 | Msa0322110:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr2_4:24412399-24412418 | None:intergenic | 50.0% | |
| CATTACCACAGGACCTGTCT+TGG | + | chr2_4:24413702-24413721 | Msa0322110:CDS | 50.0% | |
| TCTTCCTGTGTGCTGTAGTG+GGG | - | chr2_4:24414404-24414423 | None:intergenic | 50.0% | |
| CTCTTCCTGTGTGCTGTAGT+GGG | - | chr2_4:24414405-24414424 | None:intergenic | 50.0% | |
| ACTCTTCCTGTGTGCTGTAG+TGG | - | chr2_4:24414406-24414425 | None:intergenic | 50.0% | |
| ACTACAGCACACAGGAAGAG+TGG | + | chr2_4:24414405-24414424 | Msa0322110:CDS | 50.0% | |
| GATGGTTGGAACACTGCTGC+TGG | - | chr2_4:24409585-24409604 | None:intergenic | 55.0% | |
| GGACAAGGTCATTCCACACG+AGG | + | chr2_4:24409678-24409697 | Msa0322110:CDS | 55.0% | |
| ! | TGCCATAGCTTGTCCTCGTG+TGG | - | chr2_4:24409694-24409713 | None:intergenic | 55.0% |
| GGACAAGCTATGGCACGTGA+TGG | + | chr2_4:24409699-24409718 | Msa0322110:CDS | 55.0% | |
| GGAGGGACACTCTCTAATGC+TGG | + | chr2_4:24409936-24409955 | Msa0322110:CDS | 55.0% | |
| CTCTTGAGCCAGCACCAAAG+AGG | + | chr2_4:24411638-24411657 | Msa0322110:CDS | 55.0% | |
| ! | GTACGTACCCTCTTTGGTGC+TGG | - | chr2_4:24411649-24411668 | None:intergenic | 55.0% |
| TCTTCCCCACTACAGCACAC+AGG | + | chr2_4:24414397-24414416 | Msa0322110:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 24409301 | 24414535 | 24409301 | ID=Msa0322110;Name=Msa0322110 |
| chr2_4 | mRNA | 24409301 | 24414535 | 24409301 | ID=Msa0322110-mRNA-1;Parent=Msa0322110;Name=Msa0322110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|0.8|1|1|1|5|0|544 |
| chr2_4 | exon | 24409301 | 24410026 | 24409301 | ID=Msa0322110-mRNA-1:exon:8732;Parent=Msa0322110-mRNA-1 |
| chr2_4 | exon | 24411533 | 24411660 | 24411533 | ID=Msa0322110-mRNA-1:exon:8733;Parent=Msa0322110-mRNA-1 |
| chr2_4 | exon | 24412893 | 24413165 | 24412893 | ID=Msa0322110-mRNA-1:exon:8734;Parent=Msa0322110-mRNA-1 |
| chr2_4 | exon | 24413478 | 24413746 | 24413478 | ID=Msa0322110-mRNA-1:exon:8735;Parent=Msa0322110-mRNA-1 |
| chr2_4 | exon | 24414232 | 24414535 | 24414232 | ID=Msa0322110-mRNA-1:exon:8736;Parent=Msa0322110-mRNA-1 |
| chr2_4 | five_prime_UTR | 24409301 | 24409365 | 24409301 | ID=Msa0322110-mRNA-1:five_prime_utr;Parent=Msa0322110-mRNA-1 |
| chr2_4 | CDS | 24409366 | 24410026 | 24409366 | ID=Msa0322110-mRNA-1:cds;Parent=Msa0322110-mRNA-1 |
| chr2_4 | CDS | 24411533 | 24411660 | 24411533 | ID=Msa0322110-mRNA-1:cds;Parent=Msa0322110-mRNA-1 |
| chr2_4 | CDS | 24412893 | 24413165 | 24412893 | ID=Msa0322110-mRNA-1:cds;Parent=Msa0322110-mRNA-1 |
| chr2_4 | CDS | 24413478 | 24413746 | 24413478 | ID=Msa0322110-mRNA-1:cds;Parent=Msa0322110-mRNA-1 |
| chr2_4 | CDS | 24414232 | 24414535 | 24414232 | ID=Msa0322110-mRNA-1:cds;Parent=Msa0322110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
