Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245280 | XP_003595184.1 | 95.795 | 547 | 13 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245280 | sp|Q9LTS3|CKX3_ARATH | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245280 | A2Q1E3 | 95.795 | 547 | 13 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1066 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175730 | Msa0245280 | 0.813471 | 2.517461e-51 | -8.615850e-47 |
| Msa0191020 | Msa0245280 | 0.804056 | 2.594361e-49 | -8.615850e-47 |
| Msa0225220 | Msa0245280 | 0.808026 | 3.790128e-50 | -8.615850e-47 |
| Msa0233320 | Msa0245280 | 0.808378 | 3.189213e-50 | -8.615850e-47 |
| Msa0245280 | Msa0322030 | 0.963431 | 4.466405e-122 | -8.615850e-47 |
| Msa0245280 | Msa0322110 | 0.989831 | 7.703578e-180 | -8.615850e-47 |
| Msa0245280 | Msa0342010 | 0.802056 | 6.723935e-49 | -8.615850e-47 |
| Msa0245280 | Msa0717890 | 0.811284 | 7.562652e-51 | -8.615850e-47 |
| Msa0245280 | Msa0986510 | 0.802568 | 5.275545e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245280 | MtrunA17_Chr2g0299371 | 95.795 | 547 | 13 | 3 | 1 | 544 | 1 | 540 | 0.0 | 1066 |
| Msa0245280 | MtrunA17_Chr4g0071111 | 71.140 | 544 | 137 | 9 | 1 | 542 | 1 | 526 | 0.0 | 795 |
| Msa0245280 | MtrunA17_Chr4g0071121 | 58.635 | 498 | 185 | 7 | 47 | 542 | 40 | 518 | 0.0 | 592 |
| Msa0245280 | MtrunA17_Chr3g0141981 | 51.115 | 538 | 228 | 12 | 12 | 542 | 14 | 523 | 4.79e-177 | 509 |
| Msa0245280 | MtrunA17_Chr3g0091141 | 51.633 | 490 | 204 | 12 | 61 | 544 | 81 | 543 | 1.47e-165 | 481 |
| Msa0245280 | MtrunA17_Chr4g0020621 | 49.020 | 510 | 228 | 9 | 40 | 541 | 36 | 521 | 1.57e-165 | 480 |
| Msa0245280 | MtrunA17_Chr7g0257061 | 49.898 | 491 | 213 | 10 | 59 | 541 | 71 | 536 | 4.35e-161 | 469 |
| Msa0245280 | MtrunA17_Chr1g0150941 | 43.434 | 495 | 246 | 12 | 60 | 544 | 36 | 506 | 8.38e-135 | 401 |
| Msa0245280 | MtrunA17_Chr2g0299361 | 55.108 | 323 | 122 | 6 | 221 | 541 | 9 | 310 | 3.81e-118 | 351 |
| Msa0245280 | MtrunA17_Chr2g0299351 | 52.514 | 179 | 73 | 4 | 46 | 221 | 36 | 205 | 1.50e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245280 | AT5G56970.1 | 58.740 | 492 | 182 | 6 | 50 | 541 | 47 | 517 | 0.0 | 604 |
| Msa0245280 | AT1G75450.1 | 51.201 | 541 | 229 | 11 | 11 | 543 | 9 | 522 | 0.0 | 524 |
| Msa0245280 | AT1G75450.2 | 51.107 | 542 | 229 | 12 | 11 | 543 | 5 | 519 | 1.92e-180 | 519 |
| Msa0245280 | AT4G29740.2 | 50.000 | 508 | 223 | 10 | 46 | 542 | 37 | 524 | 1.67e-174 | 503 |
| Msa0245280 | AT2G19500.1 | 48.356 | 517 | 234 | 6 | 34 | 541 | 9 | 501 | 9.91e-173 | 498 |
| Msa0245280 | AT5G56970.2 | 58.481 | 395 | 146 | 4 | 50 | 444 | 47 | 423 | 4.50e-165 | 475 |
| Msa0245280 | AT2G41510.1 | 46.642 | 551 | 245 | 14 | 9 | 541 | 20 | 539 | 1.21e-162 | 475 |
| Msa0245280 | AT2G41510.2 | 49.795 | 488 | 212 | 10 | 62 | 541 | 139 | 601 | 9.55e-162 | 475 |
| Msa0245280 | AT3G63440.1 | 48.381 | 494 | 219 | 11 | 61 | 543 | 60 | 528 | 2.57e-159 | 465 |
| Msa0245280 | AT5G21482.1 | 45.525 | 514 | 250 | 14 | 41 | 544 | 30 | 523 | 1.35e-142 | 422 |
| Msa0245280 | AT4G29740.1 | 50.367 | 409 | 176 | 7 | 46 | 444 | 37 | 428 | 1.12e-135 | 400 |
| Msa0245280 | AT2G41510.3 | 46.325 | 449 | 200 | 11 | 9 | 444 | 20 | 440 | 3.73e-127 | 379 |
| Msa0245280 | AT4G29740.3 | 47.661 | 342 | 147 | 8 | 46 | 372 | 37 | 361 | 6.67e-101 | 309 |
Find 113 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGTGCATTGGATTATT+TGG | 0.147725 | 2_2:+24898096 | Msa0245280:CDS |
| AGAAGATCTCCAATTATTTA+TGG | 0.166494 | 2_2:-24898146 | None:intergenic |
| AAATCTAAGATTCGAGATTT+TGG | 0.190122 | 2_2:-24898760 | None:intergenic |
| AGAATGGTCATCATAATATT+TGG | 0.193226 | 2_2:-24898245 | None:intergenic |
| ACTCAAGTGGGTTTGATAAT+TGG | 0.218931 | 2_2:+24899646 | Msa0245280:CDS |
| CTTGGAGGATTAGGACAATT+TGG | 0.239178 | 2_2:+24896920 | Msa0245280:CDS |
| ATGGACTTGCACCTGTTTCT+TGG | 0.244954 | 2_2:+24895008 | Msa0245280:CDS |
| GAAGCTAGTTCAATGGCTTT+TGG | 0.253556 | 2_2:-24894647 | None:intergenic |
| TGATGGTGTTGTTGGAATTA+AGG | 0.254916 | 2_2:+24894895 | Msa0245280:CDS |
| CATGGAGTTCTTGGAGGATT+AGG | 0.266390 | 2_2:+24896911 | Msa0245280:CDS |
| GAACTAGCTTCAAGTGATTA+TGG | 0.267068 | 2_2:+24894659 | Msa0245280:CDS |
| GACTTACTTGTTTCTATTCA+TGG | 0.273299 | 2_2:-24898851 | None:intergenic |
| GATTATCTTTACTTGACTAT+TGG | 0.278961 | 2_2:+24895034 | Msa0245280:CDS |
| TCATTGAGATTAACCGTTCT+TGG | 0.285261 | 2_2:-24898063 | None:intergenic |
| CATCAATTGGATGTTGTTAC+TGG | 0.294573 | 2_2:+24895124 | Msa0245280:CDS |
| ATTAGGAGAATGAAGTATAT+TGG | 0.295442 | 2_2:-24894506 | None:intergenic |
| ATCAAGGACCCATAAATAAT+TGG | 0.295533 | 2_2:+24898137 | Msa0245280:CDS |
| GATTAACCGTTCTTGGTCTT+TGG | 0.297638 | 2_2:-24898056 | None:intergenic |
| GAATTATTTCATGGAGTTCT+TGG | 0.305159 | 2_2:+24896902 | Msa0245280:CDS |
| GAGGATCCTAAGGTTGGATT+TGG | 0.309767 | 2_2:+24894923 | Msa0245280:CDS |
| ACTATGTCGTTTACCGTTGA+TGG | 0.318033 | 2_2:-24894719 | None:intergenic |
| CCAGGTGATAGAATCATTCT+TGG | 0.329695 | 2_2:-24899831 | None:intergenic |
| AACGTGGTATGGTTATTATT+AGG | 0.338462 | 2_2:-24894523 | None:intergenic |
| GAAGATCTCCAATTATTTAT+GGG | 0.349964 | 2_2:-24898145 | None:intergenic |
| GAAGAGTGGACAAACCATTT+TGG | 0.351682 | 2_2:+24899762 | Msa0245280:CDS |
| CTCTCTAATGCTGGTATTAG+TGG | 0.355144 | 2_2:+24895064 | Msa0245280:CDS |
| AATTACTAGTGTTCATCAAT+TGG | 0.364831 | 2_2:+24895111 | Msa0245280:CDS |
| AACAATTCGGAATTATTTCA+TGG | 0.370002 | 2_2:+24896893 | Msa0245280:CDS |
| ATGTTGGAGGGGAACAACTA+TGG | 0.370599 | 2_2:+24894957 | Msa0245280:CDS |
| AAAATAGAGAAAGGAGTGTT+TGG | 0.381011 | 2_2:-24894427 | None:intergenic |
| AATGTTAATGATGGTGTTGT+TGG | 0.395744 | 2_2:+24894887 | Msa0245280:CDS |
| CGAATTGTTCTCTTTAGAAC+AGG | 0.402588 | 2_2:-24896879 | None:intergenic |
| AGTGGACAAACCTTTCGTTA+TGG | 0.403161 | 2_2:+24895082 | Msa0245280:CDS |
| AGAATGAAGTATATTGGAAA+AGG | 0.406936 | 2_2:-24894500 | None:intergenic |
| AAAAGTGTACGTACCCTCTT+TGG | 0.410686 | 2_2:-24896980 | None:intergenic |
| TTGTATGAAACACTTGAGTA+TGG | 0.412739 | 2_2:+24894989 | Msa0245280:CDS |
| CTCTTCCTGTGTGCTGTAGT+GGG | 0.416739 | 2_2:-24899745 | None:intergenic |
| TTCTATGATGGTCGGCTAAA+GGG | 0.423621 | 2_2:-24898174 | None:intergenic |
| GATGGTTGGAACACTGCTGC+TGG | 0.429043 | 2_2:-24894701 | None:intergenic |
| AGATAATCAGTCCAAGAAAC+AGG | 0.436827 | 2_2:-24895019 | None:intergenic |
| AGCTTCAATCACAAGGGCTA+TGG | 0.445392 | 2_2:+24898704 | Msa0245280:CDS |
| GATGATATCTTCTATGCTGT+TGG | 0.447156 | 2_2:+24899615 | Msa0245280:CDS |
| TTTGGATACTATGTTGATGT+TGG | 0.451809 | 2_2:+24894941 | Msa0245280:CDS |
| ACTCTTCCTGTGTGCTGTAG+TGG | 0.461612 | 2_2:-24899746 | None:intergenic |
| ATCACTTGAAGCTAGTTCAA+TGG | 0.467851 | 2_2:-24894654 | None:intergenic |
| CAGGGATATAGTTCAGTCCT+TGG | 0.468154 | 2_2:-24898615 | None:intergenic |
| TATCTTTACTTGACTATTGG+AGG | 0.470480 | 2_2:+24895037 | Msa0245280:CDS |
| CCTCTTGCAGCTATAAGAAA+AGG | 0.470883 | 2_2:-24894776 | None:intergenic |
| ACTTACTTGTTTCTATTCAT+GGG | 0.474021 | 2_2:-24898850 | None:intergenic |
| AAGATATCATCCTCATCATC+TGG | 0.474540 | 2_2:-24899603 | None:intergenic |
| ATTCTATGATGGTCGGCTAA+AGG | 0.477868 | 2_2:-24898175 | None:intergenic |
| TAGTGATGATTTCCATTGCT+CGG | 0.478096 | 2_2:-24894567 | None:intergenic |
| ATTGGATTATTTGGAAGGAA+TGG | 0.480338 | 2_2:+24898105 | Msa0245280:CDS |
| TAGTATCCAAATCCAACCTT+AGG | 0.485929 | 2_2:-24894929 | None:intergenic |
| AGAGAAAGGAGTGTTTGGTT+TGG | 0.485938 | 2_2:-24894422 | None:intergenic |
| TGGCAAATTCCAAGCAATAG+AGG | 0.487424 | 2_2:-24898225 | None:intergenic |
| GAATGAAGTATATTGGAAAA+GGG | 0.490860 | 2_2:-24894499 | None:intergenic |
| TTCCCTTGTAACTCAACATA+CGG | 0.494468 | 2_2:+24898201 | Msa0245280:CDS |
| TGATGAACACTAGTAATTTG+AGG | 0.495706 | 2_2:-24895106 | None:intergenic |
| CTTATAGCTGCAAGAGGACA+AGG | 0.497305 | 2_2:+24894782 | Msa0245280:CDS |
| CATTACCACAGGACCTGTCT+TGG | 0.498772 | 2_2:+24898822 | Msa0245280:CDS |
| GGTTGATATTAAACGTGGTA+TGG | 0.500255 | 2_2:-24894534 | None:intergenic |
| AGTGCATTGGATTATTTGGA+AGG | 0.508553 | 2_2:+24898100 | Msa0245280:CDS |
| GTACGTACCCTCTTTGGTGC+TGG | 0.509757 | 2_2:-24896974 | None:intergenic |
| TATGGGATGTTCCTCATCCA+TGG | 0.513254 | 2_2:+24898722 | Msa0245280:CDS |
| ACATACGGTCCTCTATTGCT+TGG | 0.523887 | 2_2:+24898216 | Msa0245280:CDS |
| GCTTCAATCACAAGGGCTAT+GGG | 0.524238 | 2_2:+24898705 | Msa0245280:CDS |
| GGTGTTGTTGTTGACATGAA+AGG | 0.527755 | 2_2:+24894839 | Msa0245280:CDS |
| GGACCGTATGTTGAGTTACA+AGG | 0.530231 | 2_2:-24898204 | None:intergenic |
| ATCTTTACTTGACTATTGGA+GGG | 0.531975 | 2_2:+24895038 | Msa0245280:CDS |
| TTCATGGGATAAACCAAGAC+AGG | 0.538621 | 2_2:-24898835 | None:intergenic |
| GATACTATGTTGATGTTGGA+GGG | 0.539216 | 2_2:+24894945 | Msa0245280:CDS |
| GTGTTGTTGTTGACATGAAA+GGG | 0.541577 | 2_2:+24894840 | Msa0245280:CDS |
| CCAAGAATGATTCTATCACC+TGG | 0.543424 | 2_2:+24899831 | Msa0245280:CDS |
| TTCTTGAATAGAGTCAGAAG+TGG | 0.544445 | 2_2:+24898673 | Msa0245280:CDS |
| CAAGGGAAAGTATTCTATGA+TGG | 0.544620 | 2_2:-24898186 | None:intergenic |
| TTATTTCATGGAGTTCTTGG+AGG | 0.545601 | 2_2:+24896905 | Msa0245280:CDS |
| TTGTTGAAGATTCTTTGTCC+AGG | 0.547679 | 2_2:-24899849 | None:intergenic |
| GGATACTATGTTGATGTTGG+AGG | 0.550954 | 2_2:+24894944 | Msa0245280:CDS |
| CAAGGACTGAACTATATCCC+TGG | 0.552415 | 2_2:+24898616 | Msa0245280:CDS |
| CTGTTCTAAAGAGAACAATT+CGG | 0.554065 | 2_2:+24896880 | Msa0245280:CDS |
| GGTATAAACATATTAAGCCA+TGG | 0.558758 | 2_2:-24898739 | None:intergenic |
| TGCCATAGCTTGTCCTCGTG+TGG | 0.560100 | 2_2:-24894810 | None:intergenic |
| GACAATTTGGAATTATAACA+AGG | 0.561322 | 2_2:+24896933 | Msa0245280:CDS |
| ATGGTTGGAACACTGCTGCT+GGG | 0.566755 | 2_2:-24894700 | None:intergenic |
| TGTCGTTTACCGTTGATGGT+TGG | 0.568467 | 2_2:-24894715 | None:intergenic |
| GAACGGTTAATCTCAATGAA+AGG | 0.571059 | 2_2:+24898067 | Msa0245280:CDS |
| GGAGGGACACTCTCTAATGC+TGG | 0.573132 | 2_2:+24895055 | Msa0245280:CDS |
| AACATATTAAGCCATGGATG+AGG | 0.575581 | 2_2:-24898733 | None:intergenic |
| AGCAGTGTTCCAACCATCAA+CGG | 0.592026 | 2_2:+24894706 | Msa0245280:CDS |
| GAGTTGAAGCTTCAATCACA+AGG | 0.592301 | 2_2:+24898697 | Msa0245280:CDS |
| TGTGTTGAGAGAATTAATAT+AGG | 0.592476 | 2_2:-24894453 | None:intergenic |
| ACTACAGCACACAGGAAGAG+TGG | 0.593070 | 2_2:+24899748 | Msa0245280:CDS |
| CCTACGGTTGATATTAAACG+TGG | 0.599631 | 2_2:-24894539 | None:intergenic |
| TTCTGAAAACAATGTGAACA+AGG | 0.599954 | 2_2:+24898264 | Msa0245280:CDS |
| AGCAACAATACCAGATGATG+AGG | 0.606041 | 2_2:+24899593 | Msa0245280:CDS |
| GGAAAGTATTCTATGATGGT+CGG | 0.607953 | 2_2:-24898182 | None:intergenic |
| TCTTGAGCCAGCACCAAAGA+GGG | 0.608805 | 2_2:+24896967 | Msa0245280:CDS |
| TCTTCCTGTGTGCTGTAGTG+GGG | 0.609971 | 2_2:-24899744 | None:intergenic |
| TTCCACACGAGGACAAGCTA+TGG | 0.612982 | 2_2:+24894808 | Msa0245280:CDS |
| ACAATTTGGAATTATAACAA+GGG | 0.614455 | 2_2:+24896934 | Msa0245280:CDS |
| CTCTTGAGCCAGCACCAAAG+AGG | 0.621715 | 2_2:+24896966 | Msa0245280:CDS |
| CCGTAGGTAAAACCGAGCAA+TGG | 0.627493 | 2_2:+24894555 | Msa0245280:CDS |
| GACCGTATGTTGAGTTACAA+GGG | 0.634995 | 2_2:-24898203 | None:intergenic |
| AATTTGAGGACCATAACGAA+AGG | 0.636962 | 2_2:-24895092 | None:intergenic |
| GGACAAGCTATGGCACGTGA+TGG | 0.637248 | 2_2:+24894818 | Msa0245280:CDS |
| ATACTATGTTGATGTTGGAG+GGG | 0.660327 | 2_2:+24894946 | Msa0245280:CDS |
| ATAAACCAAGACAGGTCCTG+TGG | 0.671706 | 2_2:-24898827 | None:intergenic |
| CTGCTGGGAATTCATGTACG+AGG | 0.686402 | 2_2:-24894685 | None:intergenic |
| CCACGTTTAATATCAACCGT+AGG | 0.694085 | 2_2:+24894539 | Msa0245280:CDS |
| TCTTCCCCACTACAGCACAC+AGG | 0.695759 | 2_2:+24899740 | Msa0245280:CDS |
| GGACAAGGTCATTCCACACG+AGG | 0.715309 | 2_2:+24894797 | Msa0245280:CDS |
| AGTTGAAGCTTCAATCACAA+GGG | 0.722424 | 2_2:+24898698 | Msa0245280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTATAATTTTTAAA+TGG | - | chr2_2:24899028-24899047 | None:intergenic | 0.0% |
| !! | AATAATAAAAATGTTAATGA+TGG | + | chr2_2:24894878-24894897 | Msa0245280:CDS | 10.0% |
| !! | TTATAAAAAAAACATATGTT+AGG | + | chr2_2:24895910-24895929 | Msa0245280:intron | 10.0% |
| !! | TTTATATATGATAAAAGATT+TGG | + | chr2_2:24895952-24895971 | Msa0245280:intron | 10.0% |
| !!! | TTAAATGTTTTTTTAATCTT+AGG | - | chr2_2:24897249-24897268 | None:intergenic | 10.0% |
| !!! | TTATTATAATTTTTAAATGG+TGG | - | chr2_2:24899025-24899044 | None:intergenic | 10.0% |
| !!! | TAATTTAAATTTTTTTCAGA+TGG | + | chr2_2:24899556-24899575 | Msa0245280:intron | 10.0% |
| !!! | AATTTAAATTTTTTTCAGAT+GGG | + | chr2_2:24899557-24899576 | Msa0245280:intron | 10.0% |
| !! | AATAAAAGAATGAATTTAGA+TGG | - | chr2_2:24895174-24895193 | None:intergenic | 15.0% |
| !!! | ATATCAAATTACTTTTTTGA+GGG | + | chr2_2:24895336-24895355 | Msa0245280:intron | 15.0% |
| !!! | ATTCCAATTTTTTTTTTTGT+GGG | - | chr2_2:24895442-24895461 | None:intergenic | 15.0% |
| !!! | AATTCCAATTTTTTTTTTTG+TGG | - | chr2_2:24895443-24895462 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAGTTTATTTAT+CGG | + | chr2_2:24895495-24895514 | Msa0245280:intron | 15.0% |
| !!! | TCTTTTATCATATATAAAAC+AGG | - | chr2_2:24895950-24895969 | None:intergenic | 15.0% |
| !!! | AATTTTTCAAAAACAAGAAA+GGG | - | chr2_2:24896361-24896380 | None:intergenic | 15.0% |
| !! | AGAAAATATTAATCAAGAAT+TGG | - | chr2_2:24896425-24896444 | None:intergenic | 15.0% |
| !!! | CTATTGATTATACATATTAT+TGG | + | chr2_2:24896459-24896478 | Msa0245280:intron | 15.0% |
| !! | ATTTGTTCAAGTATATATAA+AGG | - | chr2_2:24896708-24896727 | None:intergenic | 15.0% |
| !! | TATATATACTTGAACAAATA+AGG | + | chr2_2:24896709-24896728 | Msa0245280:intron | 15.0% |
| !!! | CTTAATCAAGTTTTAATTTT+TGG | + | chr2_2:24896827-24896846 | Msa0245280:intron | 15.0% |
| !!! | TTAATTTTTGGTTATTTTTC+AGG | + | chr2_2:24896839-24896858 | Msa0245280:intron | 15.0% |
| !!! | TATAGTAATCAGATATTTTA+AGG | + | chr2_2:24897574-24897593 | Msa0245280:intron | 15.0% |
| !!! | ATAGTAATCAGATATTTTAA+GGG | + | chr2_2:24897575-24897594 | Msa0245280:intron | 15.0% |
| !! | ATAAATAAAAACTCAATTGT+TGG | + | chr2_2:24897640-24897659 | Msa0245280:intron | 15.0% |
| !! | TAAATAAAAACTCAATTGTT+GGG | + | chr2_2:24897641-24897660 | Msa0245280:intron | 15.0% |
| !! | ATTAAGTTTATTTCAACTAT+TGG | - | chr2_2:24897833-24897852 | None:intergenic | 15.0% |
| !!! | AATATTTTTTATGTTTGTGT+AGG | + | chr2_2:24898576-24898595 | Msa0245280:intron | 15.0% |
| !!! | GTTTTTCTCAAATAATTTAT+TGG | + | chr2_2:24898943-24898962 | Msa0245280:intron | 15.0% |
| !!! | GAGTTTTAAAGAAAATAAAA+GGG | - | chr2_2:24899473-24899492 | None:intergenic | 15.0% |
| !!! | AGAGTTTTAAAGAAAATAAA+AGG | - | chr2_2:24899474-24899493 | None:intergenic | 15.0% |
| !!! | TTACAAATTTATATAATGGA+GGG | - | chr2_2:24899512-24899531 | None:intergenic | 15.0% |
| !! | TTTACAAATTTATATAATGG+AGG | - | chr2_2:24899513-24899532 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTTTCCATTTTTT+AGG | - | chr2_2:24899789-24899808 | None:intergenic | 15.0% |
| !!! | GATATCAAATTACTTTTTTG+AGG | + | chr2_2:24895335-24895354 | Msa0245280:intron | 20.0% |
| !!! | TATCAAATTACTTTTTTGAG+GGG | + | chr2_2:24895337-24895356 | Msa0245280:intron | 20.0% |
| !!! | GAAACATTATGTAAAAGTTT+TGG | - | chr2_2:24895661-24895680 | None:intergenic | 20.0% |
| !! | TTACATAATGTTTCTTTCTT+TGG | + | chr2_2:24895667-24895686 | Msa0245280:intron | 20.0% |
| !!! | ACTAGACCAAAAATAAATTT+TGG | - | chr2_2:24895772-24895791 | None:intergenic | 20.0% |
| !! | AATGGTTTATCTAAATCATA+CGG | - | chr2_2:24895803-24895822 | None:intergenic | 20.0% |
| !! | TTTAGATAAACCATTTCAAA+TGG | + | chr2_2:24895808-24895827 | Msa0245280:intron | 20.0% |
| !! | TTTATAAAAAGAAGCTAGAA+AGG | - | chr2_2:24895897-24895916 | None:intergenic | 20.0% |
| !! | ATTCCTCTACTATTAAAATT+TGG | + | chr2_2:24895984-24896003 | Msa0245280:intron | 20.0% |
| !!! | TTTCCAAATTTTAATAGTAG+AGG | - | chr2_2:24895990-24896009 | None:intergenic | 20.0% |
| !! | AAATAGTGTAATACAGTTAT+AGG | - | chr2_2:24896258-24896277 | None:intergenic | 20.0% |
| !!! | GAATTTTTCAAAAACAAGAA+AGG | - | chr2_2:24896362-24896381 | None:intergenic | 20.0% |
| !!! | ACAATTTGGAATTATAACAA+GGG | + | chr2_2:24896934-24896953 | Msa0245280:CDS | 20.0% |
| !!! | TAAAGCTTGATTTTGATATA+TGG | - | chr2_2:24897106-24897125 | None:intergenic | 20.0% |
| !! | CTATTCTCATATATAATTCT+TGG | - | chr2_2:24897201-24897220 | None:intergenic | 20.0% |
| !! | TGTGTTTGAAAAAATAAATG+TGG | + | chr2_2:24897273-24897292 | Msa0245280:intron | 20.0% |
| !! | CTTACAATTATTATTGTCAA+AGG | - | chr2_2:24897304-24897323 | None:intergenic | 20.0% |
| !! | ATATCTGATTACTATACATA+AGG | - | chr2_2:24897570-24897589 | None:intergenic | 20.0% |
| !! | ATCACTATAATAACATAACA+TGG | + | chr2_2:24897913-24897932 | Msa0245280:intron | 20.0% |
| !!! | ATGGTGAATTTCATTTTTAT+TGG | + | chr2_2:24897987-24898006 | Msa0245280:intron | 20.0% |
| !! | TTAAAGTGGTATTAAATAGT+AGG | - | chr2_2:24898326-24898345 | None:intergenic | 20.0% |
| !!! | TACTCTTTTCATAAACTAAA+CGG | + | chr2_2:24898393-24898412 | Msa0245280:intron | 20.0% |
| !! | TTCAAATCGTTATGAAATTT+AGG | + | chr2_2:24898443-24898462 | Msa0245280:intron | 20.0% |
| !!! | TTTTTTCATAATGAAATCCA+GGG | - | chr2_2:24898636-24898655 | None:intergenic | 20.0% |
| !!! | TTTTTTTCATAATGAAATCC+AGG | - | chr2_2:24898637-24898656 | None:intergenic | 20.0% |
| !!! | CGAATCTTAGATTTTAATTT+AGG | + | chr2_2:24898769-24898788 | Msa0245280:CDS | 20.0% |
| !! | AAATTATTTGAGAAAAACAG+AGG | - | chr2_2:24898941-24898960 | None:intergenic | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr2_2:24899283-24899302 | None:intergenic | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr2_2:24899297-24899316 | None:intergenic | 20.0% |
| !!! | TAGCATTTTCCTTTTTTTAA+TGG | + | chr2_2:24899339-24899358 | Msa0245280:intron | 20.0% |
| !!! | GTAAATATTTTTTACATCGT+TGG | - | chr2_2:24899387-24899406 | None:intergenic | 20.0% |
| ! | TATAGGAGAAAAATAGAGAA+AGG | - | chr2_2:24894439-24894458 | None:intergenic | 25.0% |
| ! | TGTGTTGAGAGAATTAATAT+AGG | - | chr2_2:24894456-24894475 | None:intergenic | 25.0% |
| ! | GAATGAAGTATATTGGAAAA+GGG | - | chr2_2:24894502-24894521 | None:intergenic | 25.0% |
| ! | AGAATGAAGTATATTGGAAA+AGG | - | chr2_2:24894503-24894522 | None:intergenic | 25.0% |
| ! | ATTAGGAGAATGAAGTATAT+TGG | - | chr2_2:24894509-24894528 | None:intergenic | 25.0% |
| !!! | AGATATGTTGGAATTTTTTG+TGG | - | chr2_2:24894609-24894628 | None:intergenic | 25.0% |
| !!! | TATGAGTTTTTGAGATATGT+TGG | - | chr2_2:24894621-24894640 | None:intergenic | 25.0% |
| ! | GATTATCTTTACTTGACTAT+TGG | + | chr2_2:24895034-24895053 | Msa0245280:CDS | 25.0% |
| ! | AATTACTAGTGTTCATCAAT+TGG | + | chr2_2:24895111-24895130 | Msa0245280:CDS | 25.0% |
| !!! | TCAATGTTCCATTTTTATGT+TGG | + | chr2_2:24895206-24895225 | Msa0245280:intron | 25.0% |
| ! | GTTGAAAACCAACATAAAAA+TGG | - | chr2_2:24895217-24895236 | None:intergenic | 25.0% |
| !!! | TTTTATGTTGGTTTTCAACT+TGG | + | chr2_2:24895218-24895237 | Msa0245280:intron | 25.0% |
| !! | TATATACTTTCTCGACTTTT+TGG | + | chr2_2:24895246-24895265 | Msa0245280:intron | 25.0% |
| ! | TCAGTTTAATATCTGATATG+TGG | + | chr2_2:24895297-24895316 | Msa0245280:intron | 25.0% |
| !!! | ATCAAATTACTTTTTTGAGG+GGG | + | chr2_2:24895338-24895357 | Msa0245280:intron | 25.0% |
| ! | CATCCCACAAAAAAAAAAAT+TGG | + | chr2_2:24895436-24895455 | Msa0245280:intron | 25.0% |
| !!! | CTCCGATAAATAAACTTTTT+TGG | - | chr2_2:24895500-24895519 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTATGAAGTGTTT+TGG | + | chr2_2:24895743-24895762 | Msa0245280:intron | 25.0% |
| !!! | AGTTTGTTATGAAGTGTTTT+GGG | + | chr2_2:24895744-24895763 | Msa0245280:intron | 25.0% |
| !!! | GTTATTTTCTCCATTTGAAA+TGG | - | chr2_2:24895821-24895840 | None:intergenic | 25.0% |
| ! | ATTTAACAATGTTGTTGTCT+TGG | + | chr2_2:24896219-24896238 | Msa0245280:intron | 25.0% |
| ! | TTTAACAATGTTGTTGTCTT+GGG | + | chr2_2:24896220-24896239 | Msa0245280:intron | 25.0% |
| ! | TATTTACTACTACCAATTTG+TGG | + | chr2_2:24896273-24896292 | Msa0245280:intron | 25.0% |
| ! | GTCTTTATGTCTTAAGTTAT+AGG | + | chr2_2:24896307-24896326 | Msa0245280:intron | 25.0% |
| ! | TGACCTTAAAATTATAGACA+TGG | - | chr2_2:24896486-24896505 | None:intergenic | 25.0% |
| ! | ATTCTTTAACAAACTCATGT+GGG | - | chr2_2:24896563-24896582 | None:intergenic | 25.0% |
| ! | TATTCTTTAACAAACTCATG+TGG | - | chr2_2:24896564-24896583 | None:intergenic | 25.0% |
| !!! | TTTGGTTATTTTTCAGGAAA+AGG | + | chr2_2:24896845-24896864 | Msa0245280:intron | 25.0% |
| ! | AACAATTCGGAATTATTTCA+TGG | + | chr2_2:24896893-24896912 | Msa0245280:CDS | 25.0% |
| !! | GACAATTTGGAATTATAACA+AGG | + | chr2_2:24896933-24896952 | Msa0245280:CDS | 25.0% |
| ! | AGAATTGGGATTATTATGAA+TGG | - | chr2_2:24897061-24897080 | None:intergenic | 25.0% |
| ! | AATAAAAACATGTCATGCAT+TGG | - | chr2_2:24897358-24897377 | None:intergenic | 25.0% |
| ! | CTATGTATTGTAGTTACAAT+AGG | + | chr2_2:24897487-24897506 | Msa0245280:intron | 25.0% |
| ! | ATAGGCTTCTACAAATAATT+TGG | + | chr2_2:24897505-24897524 | Msa0245280:intron | 25.0% |
| ! | CATTTAATGATTGATGTATC+TGG | - | chr2_2:24897705-24897724 | None:intergenic | 25.0% |
| ! | TTACTGATAATAAAGACTAG+AGG | + | chr2_2:24897743-24897762 | Msa0245280:intron | 25.0% |
| ! | TACTGATAATAAAGACTAGA+GGG | + | chr2_2:24897744-24897763 | Msa0245280:intron | 25.0% |
| ! | GCAATGTATATATCAACTAA+TGG | + | chr2_2:24897968-24897987 | Msa0245280:intron | 25.0% |
| !!! | TGAATTTCATTTTTATTGGC+AGG | + | chr2_2:24897991-24898010 | Msa0245280:intron | 25.0% |
| !! | ATTTTTATTGGCAGGTTAAA+TGG | + | chr2_2:24897999-24898018 | Msa0245280:intron | 25.0% |
| !! | TTTTTATTGGCAGGTTAAAT+GGG | + | chr2_2:24898000-24898019 | Msa0245280:intron | 25.0% |
| ! | AAATAGTGCATTGGATTATT+TGG | + | chr2_2:24898096-24898115 | Msa0245280:CDS | 25.0% |
| ! | GAAGATCTCCAATTATTTAT+GGG | - | chr2_2:24898148-24898167 | None:intergenic | 25.0% |
| ! | AGAAGATCTCCAATTATTTA+TGG | - | chr2_2:24898149-24898168 | None:intergenic | 25.0% |
| ! | AGAATGGTCATCATAATATT+TGG | - | chr2_2:24898248-24898267 | None:intergenic | 25.0% |
| ! | ATCAACGAGTAAAATTAAAG+TGG | - | chr2_2:24898340-24898359 | None:intergenic | 25.0% |
| ! | GAAAAATATTGAATTAGCGA+CGG | - | chr2_2:24898488-24898507 | None:intergenic | 25.0% |
| !!! | AAATCTAAGATTCGAGATTT+TGG | - | chr2_2:24898763-24898782 | None:intergenic | 25.0% |
| !!! | ACTTACTTGTTTCTATTCAT+GGG | - | chr2_2:24898853-24898872 | None:intergenic | 25.0% |
| ! | AGTAAGTCTTTAATTAACCT+TGG | + | chr2_2:24898866-24898885 | Msa0245280:intron | 25.0% |
| ! | AAGAAAAATAATGTGAACCA+AGG | - | chr2_2:24898886-24898905 | None:intergenic | 25.0% |
| !! | AAAATAGAGAAAGGAGTGTT+TGG | - | chr2_2:24894430-24894449 | None:intergenic | 30.0% |
| AACGTGGTATGGTTATTATT+AGG | - | chr2_2:24894526-24894545 | None:intergenic | 30.0% | |
| !! | AATGTTAATGATGGTGTTGT+TGG | + | chr2_2:24894887-24894906 | Msa0245280:CDS | 30.0% |
| ! | TGTTGGAATTAAGGTTTTTG+AGG | + | chr2_2:24894904-24894923 | Msa0245280:CDS | 30.0% |
| TTTGGATACTATGTTGATGT+TGG | + | chr2_2:24894941-24894960 | Msa0245280:CDS | 30.0% | |
| TTGTATGAAACACTTGAGTA+TGG | + | chr2_2:24894989-24895008 | Msa0245280:CDS | 30.0% | |
| TATCTTTACTTGACTATTGG+AGG | + | chr2_2:24895037-24895056 | Msa0245280:CDS | 30.0% | |
| ATCTTTACTTGACTATTGGA+GGG | + | chr2_2:24895038-24895057 | Msa0245280:CDS | 30.0% | |
| TGATGAACACTAGTAATTTG+AGG | - | chr2_2:24895109-24895128 | None:intergenic | 30.0% | |
| ATATCTGATATGTGGTCAAA+TGG | + | chr2_2:24895305-24895324 | Msa0245280:intron | 30.0% | |
| TATCTGATATGTGGTCAAAT+GGG | + | chr2_2:24895306-24895325 | Msa0245280:intron | 30.0% | |
| GTTTATTTATCGGAGTACAA+CGG | + | chr2_2:24895505-24895524 | Msa0245280:intron | 30.0% | |
| TTTATTTATCGGAGTACAAC+GGG | + | chr2_2:24895506-24895525 | Msa0245280:intron | 30.0% | |
| !!! | TTGGTGTTTTGTTTTTTCCT+CGG | - | chr2_2:24895642-24895661 | None:intergenic | 30.0% |
| !!! | GTTTGTTATGAAGTGTTTTG+GGG | + | chr2_2:24895745-24895764 | Msa0245280:intron | 30.0% |
| !! | TGGGGACCAAAATTTATTTT+TGG | + | chr2_2:24895763-24895782 | Msa0245280:intron | 30.0% |
| !!! | AGAATTTTTCAAGACACATG+TGG | + | chr2_2:24896038-24896057 | Msa0245280:intron | 30.0% |
| TACCAATTTGTGGTTGTTAA+GGG | + | chr2_2:24896283-24896302 | Msa0245280:intron | 30.0% | |
| ! | GGTCCATGTCTATAATTTTA+AGG | + | chr2_2:24896480-24896499 | Msa0245280:intron | 30.0% |
| !! | CTGTTCTAAAGAGAACAATT+CGG | + | chr2_2:24896880-24896899 | Msa0245280:CDS | 30.0% |
| GAATTATTTCATGGAGTTCT+TGG | + | chr2_2:24896902-24896921 | Msa0245280:CDS | 30.0% | |
| TTGGGATTATTATGAATGGT+TGG | - | chr2_2:24897057-24897076 | None:intergenic | 30.0% | |
| TATAGTCTTCTAACACATGA+AGG | + | chr2_2:24897383-24897402 | Msa0245280:intron | 30.0% | |
| ATAGTCTTCTAACACATGAA+GGG | + | chr2_2:24897384-24897403 | Msa0245280:intron | 30.0% | |
| GATTACTATACATAAGGATG+AGG | - | chr2_2:24897564-24897583 | None:intergenic | 30.0% | |
| CATTGAATAACTGATGAATC+TGG | + | chr2_2:24897666-24897685 | Msa0245280:intron | 30.0% | |
| ! | GGATCAAGATCAAATGATTT+TGG | - | chr2_2:24897812-24897831 | None:intergenic | 30.0% |
| ! | TTTTTACCAAAGACCAAGAA+CGG | + | chr2_2:24898050-24898069 | Msa0245280:CDS | 30.0% |
| AGGAAACAAAAATAGTGCAT+TGG | + | chr2_2:24898087-24898106 | Msa0245280:CDS | 30.0% | |
| ATTGGATTATTTGGAAGGAA+TGG | + | chr2_2:24898105-24898124 | Msa0245280:CDS | 30.0% | |
| !!! | GGAATGGTTTTAATGAATCA+AGG | + | chr2_2:24898121-24898140 | Msa0245280:CDS | 30.0% |
| ATCAAGGACCCATAAATAAT+TGG | + | chr2_2:24898137-24898156 | Msa0245280:CDS | 30.0% | |
| ! | TGTTCACATTGTTTTCAGAA+TGG | - | chr2_2:24898264-24898283 | None:intergenic | 30.0% |
| ! | TTCTGAAAACAATGTGAACA+AGG | + | chr2_2:24898264-24898283 | Msa0245280:CDS | 30.0% |
| GGTATAAACATATTAAGCCA+TGG | - | chr2_2:24898742-24898761 | None:intergenic | 30.0% | |
| !! | GACTTACTTGTTTCTATTCA+TGG | - | chr2_2:24898854-24898873 | None:intergenic | 30.0% |
| GTCAATCTCAATTCATCATT+CGG | + | chr2_2:24899084-24899103 | Msa0245280:intron | 30.0% | |
| TTTGTTCGGCCATTAAAAAA+AGG | - | chr2_2:24899351-24899370 | None:intergenic | 30.0% | |
| !!! | ATATTTTTTACATCGTTGGC+TGG | - | chr2_2:24899383-24899402 | None:intergenic | 30.0% |
| ! | TTGCAATTTTGTAATCATGC+TGG | + | chr2_2:24899699-24899718 | Msa0245280:CDS | 30.0% |
| ! | TGCAATTTTGTAATCATGCT+GGG | + | chr2_2:24899700-24899719 | Msa0245280:CDS | 30.0% |
| !! | ACCATTTTGGTCCTAAAAAA+TGG | + | chr2_2:24899775-24899794 | Msa0245280:CDS | 30.0% |
| !!! | TCCATTTTTTAGGACCAAAA+TGG | - | chr2_2:24899779-24899798 | None:intergenic | 30.0% |
| ! | GGTTGATATTAAACGTGGTA+TGG | - | chr2_2:24894537-24894556 | None:intergenic | 35.0% |
| TAGTGATGATTTCCATTGCT+CGG | - | chr2_2:24894570-24894589 | None:intergenic | 35.0% | |
| ATCACTTGAAGCTAGTTCAA+TGG | - | chr2_2:24894657-24894676 | None:intergenic | 35.0% | |
| ! | GAACTAGCTTCAAGTGATTA+TGG | + | chr2_2:24894659-24894678 | Msa0245280:CDS | 35.0% |
| ! | GTGTTGTTGTTGACATGAAA+GGG | + | chr2_2:24894840-24894859 | Msa0245280:CDS | 35.0% |
| !! | TGATGGTGTTGTTGGAATTA+AGG | + | chr2_2:24894895-24894914 | Msa0245280:CDS | 35.0% |
| !! | TAAGGTTTTTGAGGATCCTA+AGG | + | chr2_2:24894913-24894932 | Msa0245280:CDS | 35.0% |
| TAGTATCCAAATCCAACCTT+AGG | - | chr2_2:24894932-24894951 | None:intergenic | 35.0% | |
| GATACTATGTTGATGTTGGA+GGG | + | chr2_2:24894945-24894964 | Msa0245280:CDS | 35.0% | |
| ATACTATGTTGATGTTGGAG+GGG | + | chr2_2:24894946-24894965 | Msa0245280:CDS | 35.0% | |
| AGATAATCAGTCCAAGAAAC+AGG | - | chr2_2:24895022-24895041 | None:intergenic | 35.0% | |
| AATTTGAGGACCATAACGAA+AGG | - | chr2_2:24895095-24895114 | None:intergenic | 35.0% | |
| CATCAATTGGATGTTGTTAC+TGG | + | chr2_2:24895124-24895143 | Msa0245280:CDS | 35.0% | |
| CTTTCGAGCATATGATTTAG+TGG | - | chr2_2:24895619-24895638 | None:intergenic | 35.0% | |
| ! | ACAATCTTCCATGTGCATTT+TGG | + | chr2_2:24895839-24895858 | Msa0245280:intron | 35.0% |
| CTTTATATGTCACTGTGCAT+TGG | - | chr2_2:24895869-24895888 | None:intergenic | 35.0% | |
| CAATGCACAGTGACATATAA+AGG | + | chr2_2:24895867-24895886 | Msa0245280:intron | 35.0% | |
| CTACCAATTTGTGGTTGTTA+AGG | + | chr2_2:24896282-24896301 | Msa0245280:intron | 35.0% | |
| !! | TTGAGTTGTTAAGCCTTTTG+GGG | - | chr2_2:24896780-24896799 | None:intergenic | 35.0% |
| !! | GTTGAGTTGTTAAGCCTTTT+GGG | - | chr2_2:24896781-24896800 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGTTAAGCCTTT+TGG | - | chr2_2:24896782-24896801 | None:intergenic | 35.0% |
| !! | CGAATTGTTCTCTTTAGAAC+AGG | - | chr2_2:24896882-24896901 | None:intergenic | 35.0% |
| TTATTTCATGGAGTTCTTGG+AGG | + | chr2_2:24896905-24896924 | Msa0245280:CDS | 35.0% | |
| ATGTGACAACGTGAAGAATT+GGG | - | chr2_2:24897075-24897094 | None:intergenic | 35.0% | |
| AATGTGACAACGTGAAGAAT+TGG | - | chr2_2:24897076-24897095 | None:intergenic | 35.0% | |
| ACTAACACAGTGTACAATGA+CGG | - | chr2_2:24897162-24897181 | None:intergenic | 35.0% | |
| ATGAGAATAGTTATAGCCAC+AGG | + | chr2_2:24897211-24897230 | Msa0245280:intron | 35.0% | |
| CATGTGTTAGAAGACTATAG+TGG | - | chr2_2:24897382-24897401 | None:intergenic | 35.0% | |
| TAGTCTTCTAACACATGAAG+GGG | + | chr2_2:24897385-24897404 | Msa0245280:intron | 35.0% | |
| TCATTGAGATTAACCGTTCT+TGG | - | chr2_2:24898066-24898085 | None:intergenic | 35.0% | |
| GAACGGTTAATCTCAATGAA+AGG | + | chr2_2:24898067-24898086 | Msa0245280:CDS | 35.0% | |
| AGTGCATTGGATTATTTGGA+AGG | + | chr2_2:24898100-24898119 | Msa0245280:CDS | 35.0% | |
| !! | GGAAAGTATTCTATGATGGT+CGG | - | chr2_2:24898185-24898204 | None:intergenic | 35.0% |
| !! | CAAGGGAAAGTATTCTATGA+TGG | - | chr2_2:24898189-24898208 | None:intergenic | 35.0% |
| TTCCCTTGTAACTCAACATA+CGG | + | chr2_2:24898201-24898220 | Msa0245280:CDS | 35.0% | |
| !! | GAAATTCAAGTTTTGCTCCA+AGG | + | chr2_2:24898598-24898617 | Msa0245280:CDS | 35.0% |
| TTCTTGAATAGAGTCAGAAG+TGG | + | chr2_2:24898673-24898692 | Msa0245280:CDS | 35.0% | |
| AGTTGAAGCTTCAATCACAA+GGG | + | chr2_2:24898698-24898717 | Msa0245280:CDS | 35.0% | |
| AACATATTAAGCCATGGATG+AGG | - | chr2_2:24898736-24898755 | None:intergenic | 35.0% | |
| CAAAAACGTAACATTACCAC+AGG | + | chr2_2:24898811-24898830 | Msa0245280:CDS | 35.0% | |
| GATGAATTGAGATTGACAGA+CGG | - | chr2_2:24899081-24899100 | None:intergenic | 35.0% | |
| CTATTTGCCACAATTCAATG+AGG | + | chr2_2:24899221-24899240 | Msa0245280:intron | 35.0% | |
| AAGATATCATCCTCATCATC+TGG | - | chr2_2:24899606-24899625 | None:intergenic | 35.0% | |
| GATGATATCTTCTATGCTGT+TGG | + | chr2_2:24899615-24899634 | Msa0245280:CDS | 35.0% | |
| ! | TTGGATTTTTGCACTCAAGT+GGG | + | chr2_2:24899634-24899653 | Msa0245280:CDS | 35.0% |
| ! | ACTCAAGTGGGTTTGATAAT+TGG | + | chr2_2:24899646-24899665 | Msa0245280:CDS | 35.0% |
| TTGTTGAAGATTCTTTGTCC+AGG | - | chr2_2:24899852-24899871 | None:intergenic | 35.0% | |
| !! | AGAGAAAGGAGTGTTTGGTT+TGG | - | chr2_2:24894425-24894444 | None:intergenic | 40.0% |
| ! | CCTACGGTTGATATTAAACG+TGG | - | chr2_2:24894542-24894561 | None:intergenic | 40.0% |
| CCACGTTTAATATCAACCGT+AGG | + | chr2_2:24894539-24894558 | Msa0245280:CDS | 40.0% | |
| ! | GAAGCTAGTTCAATGGCTTT+TGG | - | chr2_2:24894650-24894669 | None:intergenic | 40.0% |
| ! | ACTATGTCGTTTACCGTTGA+TGG | - | chr2_2:24894722-24894741 | None:intergenic | 40.0% |
| CCTCTTGCAGCTATAAGAAA+AGG | - | chr2_2:24894779-24894798 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTATAGCTGCAAG+AGG | + | chr2_2:24894776-24894795 | Msa0245280:CDS | 40.0% |
| !! | GGTGTTGTTGTTGACATGAA+AGG | + | chr2_2:24894839-24894858 | Msa0245280:CDS | 40.0% |
| !! | GTTTTTGAGGATCCTAAGGT+TGG | + | chr2_2:24894917-24894936 | Msa0245280:CDS | 40.0% |
| GGATACTATGTTGATGTTGG+AGG | + | chr2_2:24894944-24894963 | Msa0245280:CDS | 40.0% | |
| CTCTCTAATGCTGGTATTAG+TGG | + | chr2_2:24895064-24895083 | Msa0245280:CDS | 40.0% | |
| AGTGGACAAACCTTTCGTTA+TGG | + | chr2_2:24895082-24895101 | Msa0245280:CDS | 40.0% | |
| !! | CACTTCGATAGCTTGCTATT+GGG | + | chr2_2:24895367-24895386 | Msa0245280:intron | 40.0% |
| GTTCTGCAACCTTTCATAGA+AGG | - | chr2_2:24895594-24895613 | None:intergenic | 40.0% | |
| TTGGAAAGCCAAAATGCACA+TGG | - | chr2_2:24895850-24895869 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr2_2:24896114-24896133 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr2_2:24899218-24899237 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr2_2:24896125-24896144 | Msa0245280:intron | 40.0% | |
| CTCCCTTAACAACCACAAAT+TGG | - | chr2_2:24896288-24896307 | None:intergenic | 40.0% | |
| AGTTAGCAAGTGATTTCCAC+AGG | + | chr2_2:24896333-24896352 | Msa0245280:intron | 40.0% | |
| GTTAGCAAGTGATTTCCACA+GGG | + | chr2_2:24896334-24896353 | Msa0245280:intron | 40.0% | |
| ACTATGTCGACAATGTGAAC+TGG | - | chr2_2:24896397-24896416 | None:intergenic | 40.0% | |
| ! | TGAGTTGTTAAGCCTTTTGG+GGG | - | chr2_2:24896779-24896798 | None:intergenic | 40.0% |
| CTTGGAGGATTAGGACAATT+TGG | + | chr2_2:24896920-24896939 | Msa0245280:CDS | 40.0% | |
| ! | AAAAGTGTACGTACCCTCTT+TGG | - | chr2_2:24896983-24897002 | None:intergenic | 40.0% |
| GGAAGAAGAAGTTAGCTACA+AGG | - | chr2_2:24897036-24897055 | None:intergenic | 40.0% | |
| GTCATTGTACACTGTGTTAG+TGG | + | chr2_2:24897161-24897180 | Msa0245280:intron | 40.0% | |
| TAGGAATCGACATATACCTG+TGG | - | chr2_2:24897230-24897249 | None:intergenic | 40.0% | |
| CTCAAAAACCTTACGCTCTA+CGG | + | chr2_2:24897609-24897628 | Msa0245280:intron | 40.0% | |
| AATAATGACCGTAGAGCGTA+AGG | - | chr2_2:24897620-24897639 | None:intergenic | 40.0% | |
| ! | GATTAACCGTTCTTGGTCTT+TGG | - | chr2_2:24898059-24898078 | None:intergenic | 40.0% |
| TTCTATGATGGTCGGCTAAA+GGG | - | chr2_2:24898177-24898196 | None:intergenic | 40.0% | |
| ATTCTATGATGGTCGGCTAA+AGG | - | chr2_2:24898178-24898197 | None:intergenic | 40.0% | |
| GACCGTATGTTGAGTTACAA+GGG | - | chr2_2:24898206-24898225 | None:intergenic | 40.0% | |
| TGGCAAATTCCAAGCAATAG+AGG | - | chr2_2:24898228-24898247 | None:intergenic | 40.0% | |
| GAGTTGAAGCTTCAATCACA+AGG | + | chr2_2:24898697-24898716 | Msa0245280:CDS | 40.0% | |
| TTCATGGGATAAACCAAGAC+AGG | - | chr2_2:24898838-24898857 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr2_2:24896125-24896144 | None:intergenic | 40.0% | |
| ATGAGGTGCGGTTGAAAAAT+AGG | + | chr2_2:24899238-24899257 | Msa0245280:intron | 40.0% | |
| TGCGGTTGAAAAATAGGAAG+TGG | + | chr2_2:24899244-24899263 | Msa0245280:intron | 40.0% | |
| AGCAACAATACCAGATGATG+AGG | + | chr2_2:24899593-24899612 | Msa0245280:CDS | 40.0% | |
| ! | GTTGGATTTTTGCACTCAAG+TGG | + | chr2_2:24899633-24899652 | Msa0245280:CDS | 40.0% |
| ! | GAAGAGTGGACAAACCATTT+TGG | + | chr2_2:24899762-24899781 | Msa0245280:CDS | 40.0% |
| CCAGGTGATAGAATCATTCT+TGG | - | chr2_2:24899834-24899853 | None:intergenic | 40.0% | |
| CCAAGAATGATTCTATCACC+TGG | + | chr2_2:24899831-24899850 | Msa0245280:CDS | 40.0% | |
| ! | CCATTGCTCGGTTTTACCTA+CGG | - | chr2_2:24894558-24894577 | None:intergenic | 45.0% |
| AGCAGTGTTCCAACCATCAA+CGG | + | chr2_2:24894706-24894725 | Msa0245280:CDS | 45.0% | |
| !! | TGTCGTTTACCGTTGATGGT+TGG | - | chr2_2:24894718-24894737 | None:intergenic | 45.0% |
| CTTATAGCTGCAAGAGGACA+AGG | + | chr2_2:24894782-24894801 | Msa0245280:CDS | 45.0% | |
| GAGGATCCTAAGGTTGGATT+TGG | + | chr2_2:24894923-24894942 | Msa0245280:CDS | 45.0% | |
| ATGTTGGAGGGGAACAACTA+TGG | + | chr2_2:24894957-24894976 | Msa0245280:CDS | 45.0% | |
| ! | ATGGACTTGCACCTGTTTCT+TGG | + | chr2_2:24895008-24895027 | Msa0245280:CDS | 45.0% |
| CCAATAGCAAGCTATCGAAG+TGG | - | chr2_2:24895369-24895388 | None:intergenic | 45.0% | |
| !! | CCACTTCGATAGCTTGCTAT+TGG | + | chr2_2:24895366-24895385 | Msa0245280:intron | 45.0% |
| CTCTACGCACCTTCTATGAA+AGG | + | chr2_2:24895582-24895601 | Msa0245280:intron | 45.0% | |
| AATCATATGCTCGAAAGCCG+AGG | + | chr2_2:24895622-24895641 | Msa0245280:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr2_2:24896097-24896116 | None:intergenic | 45.0% |
| AAAACAAGAAAGGGACCCTG+TGG | - | chr2_2:24896352-24896371 | None:intergenic | 45.0% | |
| ! | GAGTTGTTAAGCCTTTTGGG+GGG | - | chr2_2:24896778-24896797 | None:intergenic | 45.0% |
| CATGGAGTTCTTGGAGGATT+AGG | + | chr2_2:24896911-24896930 | Msa0245280:CDS | 45.0% | |
| ! | GTGTACAATGACGGTGCTTT+TGG | - | chr2_2:24897153-24897172 | None:intergenic | 45.0% |
| GGACCGTATGTTGAGTTACA+AGG | - | chr2_2:24898207-24898226 | None:intergenic | 45.0% | |
| ACATACGGTCCTCTATTGCT+TGG | + | chr2_2:24898216-24898235 | Msa0245280:CDS | 45.0% | |
| CAGGGATATAGTTCAGTCCT+TGG | - | chr2_2:24898618-24898637 | None:intergenic | 45.0% | |
| CAAGGACTGAACTATATCCC+TGG | + | chr2_2:24898616-24898635 | Msa0245280:CDS | 45.0% | |
| AGCTTCAATCACAAGGGCTA+TGG | + | chr2_2:24898704-24898723 | Msa0245280:CDS | 45.0% | |
| GCTTCAATCACAAGGGCTAT+GGG | + | chr2_2:24898705-24898724 | Msa0245280:CDS | 45.0% | |
| TATGGGATGTTCCTCATCCA+TGG | + | chr2_2:24898722-24898741 | Msa0245280:CDS | 45.0% | |
| ATAAACCAAGACAGGTCCTG+TGG | - | chr2_2:24898830-24898849 | None:intergenic | 45.0% | |
| TGCCACAATTCAATGAGGTG+CGG | + | chr2_2:24899226-24899245 | Msa0245280:intron | 45.0% | |
| AACCGCACCTCATTGAATTG+TGG | - | chr2_2:24899231-24899250 | None:intergenic | 45.0% | |
| AATGGCCGAACAAATACGAC+TGG | + | chr2_2:24899357-24899376 | Msa0245280:intron | 45.0% | |
| !!! | AATTTAAAATATTATAGTTA+AGG | - | chr2_2:24896512-24896531 | None:intergenic | 5.0% |
| !!! | ATTTTTACAAATTTATATAA+TGG | - | chr2_2:24899516-24899535 | None:intergenic | 5.0% |
| CCGTAGGTAAAACCGAGCAA+TGG | + | chr2_2:24894555-24894574 | Msa0245280:CDS | 50.0% | |
| CTGCTGGGAATTCATGTACG+AGG | - | chr2_2:24894688-24894707 | None:intergenic | 50.0% | |
| ATGGTTGGAACACTGCTGCT+GGG | - | chr2_2:24894703-24894722 | None:intergenic | 50.0% | |
| TTCCACACGAGGACAAGCTA+TGG | + | chr2_2:24894808-24894827 | Msa0245280:CDS | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr2_2:24896104-24896123 | Msa0245280:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr2_2:24896109-24896128 | None:intergenic | 50.0% | |
| CAACTACTACACCCCCCAAA+AGG | + | chr2_2:24896764-24896783 | Msa0245280:intron | 50.0% | |
| TCTTGAGCCAGCACCAAAGA+GGG | + | chr2_2:24896967-24896986 | Msa0245280:CDS | 50.0% | |
| CATTACCACAGGACCTGTCT+TGG | + | chr2_2:24898822-24898841 | Msa0245280:CDS | 50.0% | |
| GCTGGCCAGTCGTATTTGTT+CGG | - | chr2_2:24899365-24899384 | None:intergenic | 50.0% | |
| TCTTCCTGTGTGCTGTAGTG+GGG | - | chr2_2:24899747-24899766 | None:intergenic | 50.0% | |
| CTCTTCCTGTGTGCTGTAGT+GGG | - | chr2_2:24899748-24899767 | None:intergenic | 50.0% | |
| ACTCTTCCTGTGTGCTGTAG+TGG | - | chr2_2:24899749-24899768 | None:intergenic | 50.0% | |
| ACTACAGCACACAGGAAGAG+TGG | + | chr2_2:24899748-24899767 | Msa0245280:CDS | 50.0% | |
| GATGGTTGGAACACTGCTGC+TGG | - | chr2_2:24894704-24894723 | None:intergenic | 55.0% | |
| GGACAAGGTCATTCCACACG+AGG | + | chr2_2:24894797-24894816 | Msa0245280:CDS | 55.0% | |
| ! | TGCCATAGCTTGTCCTCGTG+TGG | - | chr2_2:24894813-24894832 | None:intergenic | 55.0% |
| GGACAAGCTATGGCACGTGA+TGG | + | chr2_2:24894818-24894837 | Msa0245280:CDS | 55.0% | |
| GGAGGGACACTCTCTAATGC+TGG | + | chr2_2:24895055-24895074 | Msa0245280:CDS | 55.0% | |
| CTCTTGAGCCAGCACCAAAG+AGG | + | chr2_2:24896966-24896985 | Msa0245280:CDS | 55.0% | |
| ! | GTACGTACCCTCTTTGGTGC+TGG | - | chr2_2:24896977-24896996 | None:intergenic | 55.0% |
| TCTTCCCCACTACAGCACAC+AGG | + | chr2_2:24899740-24899759 | Msa0245280:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 24894420 | 24899878 | 24894420 | ID=Msa0245280;Name=Msa0245280 |
| chr2_2 | mRNA | 24894420 | 24899878 | 24894420 | ID=Msa0245280-mRNA-1;Parent=Msa0245280;Name=Msa0245280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|1|0.8|1|1|1|5|0|544 |
| chr2_2 | exon | 24894420 | 24895145 | 24894420 | ID=Msa0245280-mRNA-1:exon:9386;Parent=Msa0245280-mRNA-1 |
| chr2_2 | exon | 24896861 | 24896988 | 24896861 | ID=Msa0245280-mRNA-1:exon:9387;Parent=Msa0245280-mRNA-1 |
| chr2_2 | exon | 24898013 | 24898285 | 24898013 | ID=Msa0245280-mRNA-1:exon:9388;Parent=Msa0245280-mRNA-1 |
| chr2_2 | exon | 24898598 | 24898866 | 24898598 | ID=Msa0245280-mRNA-1:exon:9389;Parent=Msa0245280-mRNA-1 |
| chr2_2 | exon | 24899575 | 24899878 | 24899575 | ID=Msa0245280-mRNA-1:exon:9390;Parent=Msa0245280-mRNA-1 |
| chr2_2 | five_prime_UTR | 24894420 | 24894484 | 24894420 | ID=Msa0245280-mRNA-1:five_prime_utr;Parent=Msa0245280-mRNA-1 |
| chr2_2 | CDS | 24894485 | 24895145 | 24894485 | ID=Msa0245280-mRNA-1:cds;Parent=Msa0245280-mRNA-1 |
| chr2_2 | CDS | 24896861 | 24896988 | 24896861 | ID=Msa0245280-mRNA-1:cds;Parent=Msa0245280-mRNA-1 |
| chr2_2 | CDS | 24898013 | 24898285 | 24898013 | ID=Msa0245280-mRNA-1:cds;Parent=Msa0245280-mRNA-1 |
| chr2_2 | CDS | 24898598 | 24898866 | 24898598 | ID=Msa0245280-mRNA-1:cds;Parent=Msa0245280-mRNA-1 |
| chr2_2 | CDS | 24899575 | 24899878 | 24899575 | ID=Msa0245280-mRNA-1:cds;Parent=Msa0245280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
