Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0323510 | Msa0793420 | 0.820714 | 5.928928e-53 | -8.615850e-47 |
| Msa0323510 | Msa1057420 | 0.877804 | 4.684937e-69 | -8.615850e-47 |
| Msa0323510 | Msa1057430 | 0.825417 | 4.742266e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 2_4:-27534824 | Msa0323510:CDS |
| TTAGTGTTCTGTTGCAAATC+AGG | 0.302736 | 2_4:-27533999 | Msa0323510:intron |
| CGATGTAGGCGAAGTGAATT+CGG | 0.335982 | 2_4:-27534876 | Msa0323510:intron |
| TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 2_4:-27534801 | Msa0323510:CDS |
| AAAGGTGGTTTCCTATGATA+TGG | 0.366603 | 2_4:-27534033 | Msa0323510:three_prime_UTR |
| TTCATCACATTGGCAATCAT+TGG | 0.392408 | 2_4:+27532994 | None:intergenic |
| GGGTTCAATTTCATTGATGA+TGG | 0.401086 | 2_4:+27535377 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.407565 | 2_4:-27534359 | Msa0323510:CDS |
| AGAAAGTGAACTGGGAAACT+TGG | 0.423349 | 2_4:-27534212 | Msa0323510:three_prime_UTR |
| ATCTCAACATGCCATATCAT+AGG | 0.445204 | 2_4:+27534022 | None:intergenic |
| ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 2_4:-27534800 | Msa0323510:CDS |
| TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 2_4:-27534813 | Msa0323510:CDS |
| GCAAAGGCGATGAGAAAATC+TGG | 0.463377 | 2_4:+27535262 | None:intergenic |
| AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 2_4:-27534833 | Msa0323510:CDS |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 2_4:-27534366 | Msa0323510:CDS |
| TCAAGAGCAAGAACTGGAAC+AGG | 0.482132 | 2_4:+27535235 | None:intergenic |
| CCAGTTCTTGCTCTTGACAT+CGG | 0.484096 | 2_4:-27535229 | Msa0323510:CDS |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 2_4:-27534403 | Msa0323510:intron |
| CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 2_4:-27534796 | Msa0323510:intron |
| CCGATGTCAAGAGCAAGAAC+TGG | 0.503027 | 2_4:+27535229 | None:intergenic |
| ATCAGTGATGATAAGCTAGC+AGG | 0.503324 | 2_4:-27533772 | Msa0323510:three_prime_UTR |
| GAGCAGGAATGTTGTGTGTA+GGG | 0.507902 | 2_4:-27533851 | Msa0323510:three_prime_UTR |
| GGTTCAATTTCATTGATGAT+GGG | 0.521972 | 2_4:+27535378 | None:intergenic |
| ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 2_4:-27534350 | Msa0323510:intron |
| TTGAGGCTTCTTCATCACAT+TGG | 0.542685 | 2_4:+27532984 | None:intergenic |
| TCTTGACAAGTGACAAGAGC+AGG | 0.552626 | 2_4:-27533867 | Msa0323510:three_prime_UTR |
| AGAGCAGGAATGTTGTGTGT+AGG | 0.557288 | 2_4:-27533852 | Msa0323510:three_prime_UTR |
| TCAGTGATGATAAGCTAGCA+GGG | 0.587456 | 2_4:-27533771 | Msa0323510:three_prime_UTR |
| TAAGCTAGCAGGGAATTAAG+AGG | 0.588536 | 2_4:-27533761 | Msa0323510:intron |
| TAATTAGAGTTACTCAAAGG+TGG | 0.588769 | 2_4:-27534048 | Msa0323510:three_prime_UTR |
| GATGCTAATGTTATCACTGT+TGG | 0.589755 | 2_4:-27534839 | Msa0323510:CDS |
| AACTGGAACAGGAACAGCAA+AGG | 0.592806 | 2_4:+27535246 | None:intergenic |
| AAAAGTTGAGAAAGTGAACT+GGG | 0.600211 | 2_4:-27534220 | Msa0323510:three_prime_UTR |
| TCATCAACATATCGGCATCA+GGG | 0.604907 | 2_4:-27534358 | Msa0323510:CDS |
| ATCATCAATGAAATTGAACC+CGG | 0.608696 | 2_4:-27535375 | Msa0323510:intron |
| GTCTAATTAGAGTTACTCAA+AGG | 0.623856 | 2_4:-27534051 | Msa0323510:three_prime_UTR |
| CTGATGCCGATATGTTGATG+AGG | 0.666580 | 2_4:+27534360 | None:intergenic |
| GTGAACTGGGAAACTTGGAT+AGG | 0.670748 | 2_4:-27534207 | Msa0323510:intron |
| GTATTCGGGAGATATTCTTG+AGG | 0.675734 | 2_4:+27532967 | None:intergenic |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 2_4:+27534361 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTGATTTTATATTT+GGG | - | chr2_4:27533795-27533814 | Msa0323510:three_prime_UTR | 10.0% |
| !!! | TTTTTATTTTTTTTTGCATA+TGG | - | chr2_4:27534288-27534307 | Msa0323510:intron | 10.0% |
| !!! | GTAATAATTATTTTACAATA+TGG | - | chr2_4:27534746-27534765 | Msa0323510:intron | 10.0% |
| !!! | TTTATATAATTTTTTCCTAA+AGG | - | chr2_4:27534812-27534831 | Msa0323510:CDS | 10.0% |
| !! | TTACTGGATTTATTATATTT+AGG | - | chr2_4:27533143-27533162 | Msa0323510:intron | 15.0% |
| !! | TACTGGATTTATTATATTTA+GGG | - | chr2_4:27533144-27533163 | Msa0323510:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | - | chr2_4:27533519-27533538 | Msa0323510:intron | 15.0% |
| !!! | CTATAGATTGATTTTATATT+TGG | - | chr2_4:27533794-27533813 | Msa0323510:three_prime_UTR | 15.0% |
| !!! | AAAATCTTTTACAAGATTTA+GGG | + | chr2_4:27534943-27534962 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTACAAGATTT+AGG | + | chr2_4:27534944-27534963 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTACTATTGTAC+AGG | - | chr2_4:27535196-27535215 | Msa0323510:intron | 15.0% |
| !! | ACTGGATTTATTATATTTAG+GGG | - | chr2_4:27533145-27533164 | Msa0323510:intron | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | + | chr2_4:27533704-27533723 | None:intergenic | 20.0% |
| !!! | AGTATTTTAGTTACAATTCT+TGG | - | chr2_4:27534147-27534166 | Msa0323510:intron | 20.0% |
| !!! | ATAAATTTTCTCCATTGAAA+AGG | + | chr2_4:27534628-27534647 | None:intergenic | 20.0% |
| !! | TTCATAAAATTACATCCTTT+AGG | + | chr2_4:27534830-27534849 | None:intergenic | 20.0% |
| !!! | ACAATGACTTTTATTGTATT+CGG | + | chr2_4:27535286-27535305 | None:intergenic | 20.0% |
| ! | AAAATAATTCTGATGAGATG+AGG | + | chr2_4:27533125-27533144 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | - | chr2_4:27533127-27533146 | Msa0323510:intron | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | - | chr2_4:27533310-27533329 | Msa0323510:intron | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | - | chr2_4:27533464-27533483 | Msa0323510:intron | 25.0% |
| ! | AATGAAACAAACAGGAAAAT+AGG | + | chr2_4:27533680-27533699 | None:intergenic | 25.0% |
| ! | AAGTGAGAATAATAAAGACA+AGG | + | chr2_4:27533944-27533963 | None:intergenic | 25.0% |
| !! | GTCTTTATTATTCTCACTTT+TGG | - | chr2_4:27533945-27533964 | Msa0323510:intron | 25.0% |
| !! | AAATATGCATAAAAAAGTGC+AGG | + | chr2_4:27534269-27534288 | None:intergenic | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | - | chr2_4:27534306-27534325 | Msa0323510:intron | 25.0% |
| !!! | CTCTATTTTTTGCTGATTAA+TGG | - | chr2_4:27534412-27534431 | Msa0323510:intron | 25.0% |
| !!! | GAAGAGTTTAATTTGTTTTG+TGG | - | chr2_4:27534508-27534527 | Msa0323510:intron | 25.0% |
| !! | AGTTTCTTTAACCTTTTCAA+TGG | - | chr2_4:27534614-27534633 | Msa0323510:intron | 25.0% |
| ! | TTATCAGCTTCATTACTAAA+CGG | - | chr2_4:27534644-27534663 | Msa0323510:intron | 25.0% |
| !!! | TTATGTGACATTCAAGTTTT+AGG | + | chr2_4:27534867-27534886 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | - | chr2_4:27535150-27535169 | Msa0323510:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+GGG | + | chr2_4:27535285-27535304 | None:intergenic | 25.0% |
| ! | GGTTCAATTTCATTGATGAT+GGG | + | chr2_4:27532860-27532879 | None:intergenic | 30.0% |
| ATCATCAATGAAATTGAACC+CGG | - | chr2_4:27532860-27532879 | Msa0323510:three_prime_UTR | 30.0% | |
| ! | AAATCTGGAACTTAACTAAC+CGG | + | chr2_4:27532882-27532901 | None:intergenic | 30.0% |
| ! | GTTAAGTTCCAGATTTTCAA+TGG | - | chr2_4:27532886-27532905 | Msa0323510:three_prime_UTR | 30.0% |
| ! | AAATCAACAAAATCTGGAAC+AGG | + | chr2_4:27532940-27532959 | None:intergenic | 30.0% |
| GTTACTTCTCTCATCTTATA+AGG | - | chr2_4:27533037-27533056 | Msa0323510:intron | 30.0% | |
| TGAACAAACATGATGAAAAG+AGG | + | chr2_4:27533069-27533088 | None:intergenic | 30.0% | |
| AAGTTCGTTCAATCACAAAT+GGG | - | chr2_4:27533088-27533107 | Msa0323510:intron | 30.0% | |
| ATATTTAGGGGATAGAATGA+AGG | - | chr2_4:27533157-27533176 | Msa0323510:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | + | chr2_4:27533300-27533319 | None:intergenic | 30.0% |
| GTGAATTCGGAAAAATTCAA+CGG | - | chr2_4:27533372-27533391 | Msa0323510:intron | 30.0% | |
| ! | GTTCACTTTCTCAACTTTTT+GGG | + | chr2_4:27534014-27534033 | None:intergenic | 30.0% |
| ! | AGTTCACTTTCTCAACTTTT+TGG | + | chr2_4:27534015-27534034 | None:intergenic | 30.0% |
| AAAAAGTTGAGAAAGTGAAC+TGG | - | chr2_4:27534014-27534033 | Msa0323510:three_prime_UTR | 30.0% | |
| AAAAGTTGAGAAAGTGAACT+GGG | - | chr2_4:27534015-27534034 | Msa0323510:three_prime_UTR | 30.0% | |
| GTCTAATTAGAGTTACTCAA+AGG | - | chr2_4:27534184-27534203 | Msa0323510:intron | 30.0% | |
| TAATTAGAGTTACTCAAAGG+TGG | - | chr2_4:27534187-27534206 | Msa0323510:intron | 30.0% | |
| ! | GAATTAAGAGGTATGGATTA+TGG | - | chr2_4:27534486-27534505 | Msa0323510:intron | 30.0% |
| ! | GGTTAGTTAGTTGAATAAGA+TGG | - | chr2_4:27534529-27534548 | Msa0323510:intron | 30.0% |
| !!! | CTAGCTATACTGTTGTTTTA+AGG | - | chr2_4:27534697-27534716 | Msa0323510:intron | 30.0% |
| GGGTTCAATTTCATTGATGA+TGG | + | chr2_4:27532861-27532880 | None:intergenic | 35.0% | |
| ! | AATCTGGAACTTAACTAACC+GGG | + | chr2_4:27532881-27532900 | None:intergenic | 35.0% |
| ACGCGAAAATCAACAAAATC+TGG | + | chr2_4:27532946-27532965 | None:intergenic | 35.0% | |
| CAAGTTCGTTCAATCACAAA+TGG | - | chr2_4:27533087-27533106 | Msa0323510:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | - | chr2_4:27533174-27533193 | Msa0323510:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | - | chr2_4:27533175-27533194 | Msa0323510:intron | 35.0% |
| ATTGTGACGATTATCGATGT+AGG | - | chr2_4:27533345-27533364 | Msa0323510:intron | 35.0% | |
| GATGCTAATGTTATCACTGT+TGG | - | chr2_4:27533396-27533415 | Msa0323510:intron | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | + | chr2_4:27533633-27533652 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | - | chr2_4:27533869-27533888 | Msa0323510:three_prime_UTR | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | + | chr2_4:27533924-27533943 | None:intergenic | 35.0% | |
| !! | TCTCACTTTTGGTTAAATGC+AGG | - | chr2_4:27533956-27533975 | Msa0323510:intron | 35.0% |
| AAAGGTGGTTTCCTATGATA+TGG | - | chr2_4:27534202-27534221 | Msa0323510:intron | 35.0% | |
| ATCTCAACATGCCATATCAT+AGG | + | chr2_4:27534216-27534235 | None:intergenic | 35.0% | |
| TTAGTGTTCTGTTGCAAATC+AGG | - | chr2_4:27534236-27534255 | Msa0323510:three_prime_UTR | 35.0% | |
| TTCATATGCTTCATCACTTG+AGG | + | chr2_4:27534560-27534579 | None:intergenic | 35.0% | |
| GGTAATCCTCGTTGTAATTA+AGG | - | chr2_4:27534665-27534684 | Msa0323510:intron | 35.0% | |
| TCAAGTCCTTAATTACAACG+AGG | + | chr2_4:27534674-27534693 | None:intergenic | 35.0% | |
| ! | ACAATATGGCTTGTCTTTGA+TGG | - | chr2_4:27534760-27534779 | Msa0323510:intron | 35.0% |
| !!! | GACATTCAAGTTTTAGGTCA+CGG | + | chr2_4:27534861-27534880 | None:intergenic | 35.0% |
| TGTCACATAAAATCATGCAC+AGG | - | chr2_4:27534877-27534896 | Msa0323510:intron | 35.0% | |
| CAAATGTGATGTAGAACAGA+AGG | - | chr2_4:27535070-27535089 | Msa0323510:intron | 35.0% | |
| TTCATCACATTGGCAATCAT+TGG | + | chr2_4:27535244-27535263 | None:intergenic | 35.0% | |
| GAACAGGACCATTGAAAATC+TGG | + | chr2_4:27532897-27532916 | None:intergenic | 40.0% | |
| ! | AATCTGGAACAGGAACAACA+CGG | + | chr2_4:27532930-27532949 | None:intergenic | 40.0% |
| !!! | ATTCTTGTGTTTTGGGAGGT+AGG | - | chr2_4:27533182-27533201 | Msa0323510:intron | 40.0% |
| TTGGGAGGTAGGAGTAAAAA+TGG | - | chr2_4:27533193-27533212 | Msa0323510:intron | 40.0% | |
| GTTGGATGGCAAATTCTTGT+TGG | + | chr2_4:27533265-27533284 | None:intergenic | 40.0% | |
| CAAGAATTTGCCATCCAACA+TGG | - | chr2_4:27533266-27533285 | Msa0323510:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | + | chr2_4:27533283-27533302 | None:intergenic | 40.0% | |
| AATGTTATCACTGTTGGTGC+TGG | - | chr2_4:27533402-27533421 | Msa0323510:intron | 40.0% | |
| TATTGCTCTGGTTGTACTCT+TGG | - | chr2_4:27533434-27533453 | Msa0323510:intron | 40.0% | |
| ATTGCTCTGGTTGTACTCTT+GGG | - | chr2_4:27533435-27533454 | Msa0323510:intron | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | + | chr2_4:27533483-27533502 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | + | chr2_4:27533492-27533511 | None:intergenic | 40.0% | |
| CACACGGAAATGAAACAAAC+AGG | + | chr2_4:27533688-27533707 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | - | chr2_4:27533832-27533851 | Msa0323510:three_prime_UTR | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | + | chr2_4:27533877-27533896 | None:intergenic | 40.0% |
| TCATCAACATATCGGCATCA+GGG | - | chr2_4:27533877-27533896 | Msa0323510:three_prime_UTR | 40.0% | |
| AGAAAGTGAACTGGGAAACT+TGG | - | chr2_4:27534023-27534042 | Msa0323510:three_prime_UTR | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | - | chr2_4:27534321-27534340 | Msa0323510:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | - | chr2_4:27534322-27534341 | Msa0323510:intron | 40.0% | |
| ATCAGTGATGATAAGCTAGC+AGG | - | chr2_4:27534463-27534482 | Msa0323510:intron | 40.0% | |
| TCAGTGATGATAAGCTAGCA+GGG | - | chr2_4:27534464-27534483 | Msa0323510:intron | 40.0% | |
| TAAGCTAGCAGGGAATTAAG+AGG | - | chr2_4:27534474-27534493 | Msa0323510:intron | 40.0% | |
| TAGCAGGGAATTAAGAGGTA+TGG | - | chr2_4:27534479-27534498 | Msa0323510:intron | 40.0% | |
| TTACTAGTGACCTCTAGTGT+TGG | - | chr2_4:27535007-27535026 | Msa0323510:intron | 40.0% | |
| TACTAGTGACCTCTAGTGTT+GGG | - | chr2_4:27535008-27535027 | Msa0323510:intron | 40.0% | |
| TTGAGGCTTCTTCATCACAT+TGG | + | chr2_4:27535254-27535273 | None:intergenic | 40.0% | |
| GTATTCGGGAGATATTCTTG+AGG | + | chr2_4:27535271-27535290 | None:intergenic | 40.0% | |
| GCAAAGGCGATGAGAAAATC+TGG | + | chr2_4:27532976-27532995 | None:intergenic | 45.0% | |
| AACTGGAACAGGAACAGCAA+AGG | + | chr2_4:27532992-27533011 | None:intergenic | 45.0% | |
| TCAAGAGCAAGAACTGGAAC+AGG | + | chr2_4:27533003-27533022 | None:intergenic | 45.0% | |
| CCAGTTCTTGCTCTTGACAT+CGG | - | chr2_4:27533006-27533025 | Msa0323510:three_prime_UTR | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | - | chr2_4:27533178-27533197 | Msa0323510:intron | 45.0% |
| GGATCTTAAGCCATGTTGGA+TGG | + | chr2_4:27533279-27533298 | None:intergenic | 45.0% | |
| CGATGTAGGCGAAGTGAATT+CGG | - | chr2_4:27533359-27533378 | Msa0323510:intron | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | + | chr2_4:27533878-27533897 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | - | chr2_4:27533876-27533895 | Msa0323510:three_prime_UTR | 45.0% | |
| GTGAACTGGGAAACTTGGAT+AGG | - | chr2_4:27534028-27534047 | Msa0323510:three_prime_UTR | 45.0% | |
| TCTTGACAAGTGACAAGAGC+AGG | - | chr2_4:27534368-27534387 | Msa0323510:CDS | 45.0% | |
| AGAGCAGGAATGTTGTGTGT+AGG | - | chr2_4:27534383-27534402 | Msa0323510:CDS | 45.0% | |
| GAGCAGGAATGTTGTGTGTA+GGG | - | chr2_4:27534384-27534403 | Msa0323510:CDS | 45.0% | |
| ! | GGCTTGTCTTTGATGGCTAT+TGG | - | chr2_4:27534767-27534786 | Msa0323510:intron | 45.0% |
| TTGATTGTGCCCAACACTAG+AGG | + | chr2_4:27535020-27535039 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGGGCACAATCAA+TGG | - | chr2_4:27535020-27535039 | Msa0323510:intron | 45.0% |
| ACACGGTGGAAAACTGGAAC+AGG | + | chr2_4:27532913-27532932 | None:intergenic | 50.0% | |
| GGAACAACACGGTGGAAAAC+TGG | + | chr2_4:27532919-27532938 | None:intergenic | 50.0% | |
| CCGATGTCAAGAGCAAGAAC+TGG | + | chr2_4:27533009-27533028 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGGTATTGCTC+TGG | - | chr2_4:27533422-27533441 | Msa0323510:intron | 50.0% |
| CTCTGGTTGTACTCTTGGGA+AGG | - | chr2_4:27533439-27533458 | Msa0323510:intron | 50.0% | |
| ATATCGGCATCAGGGCAACT+TGG | - | chr2_4:27533885-27533904 | Msa0323510:three_prime_UTR | 50.0% | |
| CTGGAACAGGAACAACACGG+TGG | + | chr2_4:27532927-27532946 | None:intergenic | 55.0% | |
| !! | ACTGTTGGTGCTGGTGTTGC+TGG | - | chr2_4:27533411-27533430 | Msa0323510:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 27532845 | 27535412 | 27532845 | ID=Msa0323510;Name=Msa0323510 |
| chr2_4 | mRNA | 27532845 | 27535412 | 27532845 | ID=Msa0323510-mRNA-1;Parent=Msa0323510;Name=Msa0323510-mRNA-1;_AED=0.20;_eAED=0.33;_QI=0|0.71|0.75|1|0.57|0.62|8|488|101 |
| chr2_4 | exon | 27532845 | 27533039 | 27532845 | ID=Msa0323510-mRNA-1:exon:9576;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27533762 | 27533914 | 27533762 | ID=Msa0323510-mRNA-1:exon:9575;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27534000 | 27534081 | 27534000 | ID=Msa0323510-mRNA-1:exon:9574;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27534208 | 27534279 | 27534208 | ID=Msa0323510-mRNA-1:exon:9573;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27534351 | 27534421 | 27534351 | ID=Msa0323510-mRNA-1:exon:9572;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27534797 | 27534890 | 27534797 | ID=Msa0323510-mRNA-1:exon:9571;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27535221 | 27535310 | 27535221 | ID=Msa0323510-mRNA-1:exon:9570;Parent=Msa0323510-mRNA-1 |
| chr2_4 | exon | 27535376 | 27535412 | 27535376 | ID=Msa0323510-mRNA-1:exon:9569;Parent=Msa0323510-mRNA-1 |
| chr2_4 | CDS | 27535376 | 27535412 | 27535376 | ID=Msa0323510-mRNA-1:cds;Parent=Msa0323510-mRNA-1 |
| chr2_4 | CDS | 27535221 | 27535310 | 27535221 | ID=Msa0323510-mRNA-1:cds;Parent=Msa0323510-mRNA-1 |
| chr2_4 | CDS | 27534797 | 27534890 | 27534797 | ID=Msa0323510-mRNA-1:cds;Parent=Msa0323510-mRNA-1 |
| chr2_4 | CDS | 27534351 | 27534421 | 27534351 | ID=Msa0323510-mRNA-1:cds;Parent=Msa0323510-mRNA-1 |
| chr2_4 | CDS | 27534266 | 27534279 | 27534266 | ID=Msa0323510-mRNA-1:cds;Parent=Msa0323510-mRNA-1 |
| chr2_4 | three_prime_UTR | 27534208 | 27534265 | 27534208 | ID=Msa0323510-mRNA-1:three_prime_utr;Parent=Msa0323510-mRNA-1 |
| chr2_4 | three_prime_UTR | 27534000 | 27534081 | 27534000 | ID=Msa0323510-mRNA-1:three_prime_utr;Parent=Msa0323510-mRNA-1 |
| chr2_4 | three_prime_UTR | 27533762 | 27533914 | 27533762 | ID=Msa0323510-mRNA-1:three_prime_utr;Parent=Msa0323510-mRNA-1 |
| chr2_4 | three_prime_UTR | 27532845 | 27533039 | 27532845 | ID=Msa0323510-mRNA-1:three_prime_utr;Parent=Msa0323510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
