Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108870 | Msa1057430 | 0.805106 | 1.567015e-49 | -8.615850e-47 |
| Msa0659990 | Msa1057430 | 0.810428 | 1.158378e-50 | -8.615850e-47 |
| Msa0704800 | Msa1057430 | 0.815724 | 7.985107e-52 | -8.615850e-47 |
| Msa0793420 | Msa1057430 | 0.909773 | 3.929443e-82 | -8.615850e-47 |
| Msa0795660 | Msa1057430 | 0.828235 | 1.006515e-54 | -8.615850e-47 |
| Msa0832820 | Msa1057430 | 0.833940 | 3.995256e-56 | -8.615850e-47 |
| Msa0171850 | Msa1057430 | 0.800509 | 1.394200e-48 | -8.615850e-47 |
| Msa0179950 | Msa1057430 | 0.801249 | 9.841649e-49 | -8.615850e-47 |
| Msa0193600 | Msa1057430 | 0.800929 | 1.144221e-48 | -8.615850e-47 |
| Msa0215360 | Msa1057430 | 0.822984 | 1.768157e-53 | -8.615850e-47 |
| Msa0221600 | Msa1057430 | 0.823077 | 1.682125e-53 | -8.615850e-47 |
| Msa0398230 | Msa1057430 | 0.801132 | 1.040173e-48 | -8.615850e-47 |
| Msa0431770 | Msa1057430 | 0.810113 | 1.354870e-50 | -8.615850e-47 |
| Msa0478580 | Msa1057430 | 0.803398 | 3.553263e-49 | -8.615850e-47 |
| Msa1057420 | Msa1057430 | 0.897831 | 9.596344e-77 | -8.615850e-47 |
| Msa1057430 | Msa1323990 | 0.809914 | 1.495101e-50 | -8.615850e-47 |
| Msa1057430 | Msa1325930 | 0.813323 | 2.713375e-51 | -8.615850e-47 |
| Msa0323510 | Msa1057430 | 0.825417 | 4.742266e-54 | -8.615850e-47 |
| Msa0332750 | Msa1057430 | 0.828782 | 7.425083e-55 | -8.615850e-47 |
| Msa0337510 | Msa1057430 | 0.816409 | 5.613400e-52 | -8.615850e-47 |
| Msa0537530 | Msa1057430 | 0.803528 | 3.339548e-49 | -8.615850e-47 |
| Msa0869010 | Msa1057430 | 0.806760 | 7.033424e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 7_2:+39209392 | Msa1057430:CDS |
| TTAGTGTTCTGTTGCAAATC+AGG | 0.302736 | 7_2:+39210217 | Msa1057430:three_prime_UTR |
| CGATGTAGGCGAAGTTAATT+CGG | 0.329255 | 7_2:+39209340 | Msa1057430:intron |
| TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 7_2:+39209415 | Msa1057430:CDS |
| AAAGGTGGTTTCCTATGATA+TGG | 0.387309 | 7_2:+39210183 | Msa1057430:three_prime_UTR |
| TTCATCACATTGGCAATCAT+TGG | 0.392408 | 7_2:-39211221 | None:intergenic |
| GGGTTCAATTTCATTGATGA+TGG | 0.393070 | 7_2:-39208839 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.407565 | 7_2:+39209857 | Msa1057430:CDS |
| AGAAAGTGAACTGGGAAACT+TGG | 0.423349 | 7_2:+39210004 | Msa1057430:three_prime_UTR |
| ATCTCAACACGCCATATCAT+AGG | 0.436205 | 7_2:-39210194 | None:intergenic |
| ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 7_2:+39209416 | Msa1057430:CDS |
| TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 7_2:+39209403 | Msa1057430:CDS |
| AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 7_2:+39209383 | Msa1057430:CDS |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 7_2:+39209850 | Msa1057430:CDS |
| TCAAGAGCAAGAACTGGAAC+AGG | 0.482132 | 7_2:-39208981 | None:intergenic |
| CCAGTTCTTGCTCTTGACAT+CGG | 0.484096 | 7_2:+39208987 | Msa1057430:CDS |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 7_2:+39209813 | Msa1057430:intron |
| CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 7_2:+39209420 | Msa1057430:CDS |
| CCGATGTCAAGAGCAAGAAC+TGG | 0.503027 | 7_2:-39208987 | None:intergenic |
| ATCAGTGATGATAAGCTAGC+AGG | 0.503324 | 7_2:+39210444 | Msa1057430:three_prime_UTR |
| GAGCAGGAATGTTGTGTGTA+GGG | 0.507902 | 7_2:+39210365 | Msa1057430:three_prime_UTR |
| CAGGCATAAGCAAGTGATGT+AGG | 0.511195 | 7_2:+39211195 | Msa1057430:intron |
| GGTTCAATTTCATTGATGAT+GGG | 0.521972 | 7_2:-39208838 | None:intergenic |
| TCTTGACAAGTGACAAGAGC+AGG | 0.523090 | 7_2:+39210349 | Msa1057430:three_prime_UTR |
| ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 7_2:+39209866 | Msa1057430:CDS |
| TTGAGGCTTCTTCATCACAT+TGG | 0.542685 | 7_2:-39211231 | None:intergenic |
| AGAGCAGGAATGTTGTGTGT+AGG | 0.557288 | 7_2:+39210364 | Msa1057430:three_prime_UTR |
| ACAAAGGCGATGAGAAAAGC+TGG | 0.582423 | 7_2:-39208954 | None:intergenic |
| TCAGTGATGATAAGCTAGCA+GGG | 0.587456 | 7_2:+39210445 | Msa1057430:three_prime_UTR |
| TAAGCTAGCAGGGAATTAAG+AGG | 0.588536 | 7_2:+39210455 | Msa1057430:three_prime_UTR |
| TAATTAGAGTTACTCAAAGG+TGG | 0.588769 | 7_2:+39210168 | Msa1057430:three_prime_UTR |
| GATGCTAATGTTATCACTGT+TGG | 0.589755 | 7_2:+39209377 | Msa1057430:CDS |
| AAAAGTTGAGAAAGTGAACT+GGG | 0.600211 | 7_2:+39209996 | Msa1057430:three_prime_UTR |
| TCATCAACATATCGGCATCA+GGG | 0.604907 | 7_2:+39209858 | Msa1057430:CDS |
| GTCTAATTAGAGTTACTCAA+AGG | 0.623856 | 7_2:+39210165 | Msa1057430:three_prime_UTR |
| AACTGGAACAGGAACAACAA+AGG | 0.628523 | 7_2:-39208970 | None:intergenic |
| CTGATGCCGATATGTTGATG+AGG | 0.666580 | 7_2:-39209856 | None:intergenic |
| GTGAACTGGGAAACTTGGAT+AGG | 0.670748 | 7_2:+39210009 | Msa1057430:three_prime_UTR |
| GTATTCGGGAGATATTCTTG+AGG | 0.675734 | 7_2:-39211248 | None:intergenic |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 7_2:-39209855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTGATTTTATATTT+GGG | + | chr7_2:39209776-39209795 | Msa1057430:intron | 10.0% |
| !!! | TTTTTATTTTTTTTTGCATA+TGG | + | chr7_2:39210269-39210288 | Msa1057430:intron | 10.0% |
| !!! | GTAATAATTATTTTACAATA+TGG | + | chr7_2:39210727-39210746 | Msa1057430:intron | 10.0% |
| !!! | TTTATATAATTTTTTCCTAA+AGG | + | chr7_2:39210793-39210812 | Msa1057430:intron | 10.0% |
| !! | TTACTGGATTTATTATATTT+AGG | + | chr7_2:39209124-39209143 | Msa1057430:intron | 15.0% |
| !! | TACTGGATTTATTATATTTA+GGG | + | chr7_2:39209125-39209144 | Msa1057430:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | + | chr7_2:39209500-39209519 | Msa1057430:intron | 15.0% |
| !!! | CTATAGATTGATTTTATATT+TGG | + | chr7_2:39209775-39209794 | Msa1057430:intron | 15.0% |
| !!! | AAAATCTTTTACAAGATTTA+GGG | - | chr7_2:39210924-39210943 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTACAAGATTT+AGG | - | chr7_2:39210925-39210944 | None:intergenic | 15.0% |
| !! | ACTGGATTTATTATATTTAG+GGG | + | chr7_2:39209126-39209145 | Msa1057430:intron | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | - | chr7_2:39209685-39209704 | None:intergenic | 20.0% |
| !!! | AGTATTTTAGTTACAATTCT+TGG | + | chr7_2:39210128-39210147 | Msa1057430:intron | 20.0% |
| !!! | ATAAATTTTCTCCATTGAAA+AGG | - | chr7_2:39210609-39210628 | None:intergenic | 20.0% |
| !! | TTCATAAAATTACATCCTTT+AGG | - | chr7_2:39210811-39210830 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTACTATTGTAC+AGG | + | chr7_2:39211176-39211195 | Msa1057430:intron | 20.0% |
| !!! | ACAATGACTTTTATTGTATT+CGG | - | chr7_2:39211266-39211285 | None:intergenic | 20.0% |
| !! | AAAATCTGGAACTTAACTAA+CGG | - | chr7_2:39208864-39208883 | None:intergenic | 25.0% |
| ! | AAAATAATTCTGATGAGATG+AGG | - | chr7_2:39209106-39209125 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | + | chr7_2:39209108-39209127 | Msa1057430:intron | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | + | chr7_2:39209291-39209310 | Msa1057430:intron | 25.0% |
| ! | GTTAATTCGGAAAAATTCAA+CGG | + | chr7_2:39209353-39209372 | Msa1057430:CDS | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | + | chr7_2:39209445-39209464 | Msa1057430:intron | 25.0% |
| !! | TGATTTGATTTATTTGGTGA+TGG | + | chr7_2:39209506-39209525 | Msa1057430:intron | 25.0% |
| ! | AATGAAACAAACAGGAAAAT+AGG | - | chr7_2:39209661-39209680 | None:intergenic | 25.0% |
| ! | AAGTGAGAATAATAAAGACA+AGG | - | chr7_2:39209925-39209944 | None:intergenic | 25.0% |
| !! | GTCTTTATTATTCTCACTTT+TGG | + | chr7_2:39209926-39209945 | Msa1057430:intron | 25.0% |
| !! | AAATATGCATAAAAAAGTGC+AGG | - | chr7_2:39210250-39210269 | None:intergenic | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | + | chr7_2:39210287-39210306 | Msa1057430:intron | 25.0% |
| !!! | CTCTATTTTTTGCTGATTAA+TGG | + | chr7_2:39210393-39210412 | Msa1057430:three_prime_UTR | 25.0% |
| !!! | GAAGAGTTTAATTTGTTTTG+TGG | + | chr7_2:39210489-39210508 | Msa1057430:intron | 25.0% |
| !! | AGTTTCTTTAACCTTTTCAA+TGG | + | chr7_2:39210595-39210614 | Msa1057430:intron | 25.0% |
| ! | TTATCAGCTTCATTACTAAA+CGG | + | chr7_2:39210625-39210644 | Msa1057430:intron | 25.0% |
| !!! | TTATGTGACATTCAAGTTTT+AGG | - | chr7_2:39210848-39210867 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | + | chr7_2:39211131-39211150 | Msa1057430:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+GGG | - | chr7_2:39211265-39211284 | None:intergenic | 25.0% |
| ! | GGTTCAATTTCATTGATGAT+GGG | - | chr7_2:39208841-39208860 | None:intergenic | 30.0% |
| ! | AAATCTGGAACTTAACTAAC+GGG | - | chr7_2:39208863-39208882 | None:intergenic | 30.0% |
| ! | GTTAAGTTCCAGATTTTCAA+TGG | + | chr7_2:39208867-39208886 | Msa1057430:intron | 30.0% |
| ! | AAATCAACAAAATCTGGAAC+AGG | - | chr7_2:39208921-39208940 | None:intergenic | 30.0% |
| GTTACTTCTCTCATCTTATA+AGG | + | chr7_2:39209018-39209037 | Msa1057430:intron | 30.0% | |
| TGAACAAACATGATGAAAAG+AGG | - | chr7_2:39209050-39209069 | None:intergenic | 30.0% | |
| AAGTTCGTTCAATCACAAAT+GGG | + | chr7_2:39209069-39209088 | Msa1057430:intron | 30.0% | |
| ATATTTAGGGGATAGAATGA+AGG | + | chr7_2:39209138-39209157 | Msa1057430:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | - | chr7_2:39209281-39209300 | None:intergenic | 30.0% |
| ! | GTTCACTTTCTCAACTTTTT+GGG | - | chr7_2:39209995-39210014 | None:intergenic | 30.0% |
| ! | AGTTCACTTTCTCAACTTTT+TGG | - | chr7_2:39209996-39210015 | None:intergenic | 30.0% |
| AAAAAGTTGAGAAAGTGAAC+TGG | + | chr7_2:39209995-39210014 | Msa1057430:three_prime_UTR | 30.0% | |
| AAAAGTTGAGAAAGTGAACT+GGG | + | chr7_2:39209996-39210015 | Msa1057430:three_prime_UTR | 30.0% | |
| GTCTAATTAGAGTTACTCAA+AGG | + | chr7_2:39210165-39210184 | Msa1057430:three_prime_UTR | 30.0% | |
| TAATTAGAGTTACTCAAAGG+TGG | + | chr7_2:39210168-39210187 | Msa1057430:three_prime_UTR | 30.0% | |
| ! | GAATTAAGAGGTATGGATTA+TGG | + | chr7_2:39210467-39210486 | Msa1057430:intron | 30.0% |
| ! | GGTTAGTTAGTTGAATAAGA+TGG | + | chr7_2:39210510-39210529 | Msa1057430:intron | 30.0% |
| !!! | CTAGCTATACTGTTGTTTTA+AGG | + | chr7_2:39210678-39210697 | Msa1057430:intron | 30.0% |
| GGGTTCAATTTCATTGATGA+TGG | - | chr7_2:39208842-39208861 | None:intergenic | 35.0% | |
| ! | AATCTGGAACTTAACTAACG+GGG | - | chr7_2:39208862-39208881 | None:intergenic | 35.0% |
| ACGCGAAAATCAACAAAATC+TGG | - | chr7_2:39208927-39208946 | None:intergenic | 35.0% | |
| CAAGTTCGTTCAATCACAAA+TGG | + | chr7_2:39209068-39209087 | Msa1057430:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | + | chr7_2:39209155-39209174 | Msa1057430:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | + | chr7_2:39209156-39209175 | Msa1057430:intron | 35.0% |
| ATTGTGACGATTATCGATGT+AGG | + | chr7_2:39209326-39209345 | Msa1057430:intron | 35.0% | |
| GATGCTAATGTTATCACTGT+TGG | + | chr7_2:39209377-39209396 | Msa1057430:CDS | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | - | chr7_2:39209614-39209633 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | + | chr7_2:39209850-39209869 | Msa1057430:CDS | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | - | chr7_2:39209905-39209924 | None:intergenic | 35.0% | |
| !! | TCTCACTTTTGGTTAAATGC+AGG | + | chr7_2:39209937-39209956 | Msa1057430:intron | 35.0% |
| AAAGGTGGTTTCCTATGATA+TGG | + | chr7_2:39210183-39210202 | Msa1057430:three_prime_UTR | 35.0% | |
| TTAGTGTTCTGTTGCAAATC+AGG | + | chr7_2:39210217-39210236 | Msa1057430:three_prime_UTR | 35.0% | |
| TTCATATGCTTCATCACTTG+AGG | - | chr7_2:39210541-39210560 | None:intergenic | 35.0% | |
| GGTAATCCTCGTTGTAATTA+AGG | + | chr7_2:39210646-39210665 | Msa1057430:intron | 35.0% | |
| TCAAGTCCTTAATTACAACG+AGG | - | chr7_2:39210655-39210674 | None:intergenic | 35.0% | |
| ! | ACAATATGGCTTGTCTTTGA+TGG | + | chr7_2:39210741-39210760 | Msa1057430:intron | 35.0% |
| !!! | GACATTCAAGTTTTAGGTCA+CGG | - | chr7_2:39210842-39210861 | None:intergenic | 35.0% |
| TGTCACATAAAATCATGCAC+AGG | + | chr7_2:39210858-39210877 | Msa1057430:intron | 35.0% | |
| CAAATGTGATGTAGAACAGA+AGG | + | chr7_2:39211051-39211070 | Msa1057430:intron | 35.0% | |
| TTCATCACATTGGCAATCAT+TGG | - | chr7_2:39211224-39211243 | None:intergenic | 35.0% | |
| GAACAGGACCATTGAAAATC+TGG | - | chr7_2:39208878-39208897 | None:intergenic | 40.0% | |
| ! | AATCTGGAACAGGAACAACA+CGG | - | chr7_2:39208911-39208930 | None:intergenic | 40.0% |
| AACTGGAACAGGAACAACAA+AGG | - | chr7_2:39208973-39208992 | None:intergenic | 40.0% | |
| GATGAGATGAGGAACAAAAG+TGG | - | chr7_2:39209095-39209114 | None:intergenic | 40.0% | |
| !!! | ATTCTTGTGTTTTGGGAGGT+AGG | + | chr7_2:39209163-39209182 | Msa1057430:intron | 40.0% |
| TTGGGAGGTAGGAGTAAAAA+TGG | + | chr7_2:39209174-39209193 | Msa1057430:intron | 40.0% | |
| GTTGGATGGCAAATTCTTGT+TGG | - | chr7_2:39209246-39209265 | None:intergenic | 40.0% | |
| CAAGAATTTGCCATCCAACA+TGG | + | chr7_2:39209247-39209266 | Msa1057430:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | - | chr7_2:39209264-39209283 | None:intergenic | 40.0% | |
| CGATGTAGGCGAAGTTAATT+CGG | + | chr7_2:39209340-39209359 | Msa1057430:intron | 40.0% | |
| AATGTTATCACTGTTGGTGC+TGG | + | chr7_2:39209383-39209402 | Msa1057430:CDS | 40.0% | |
| TATTGCTCTGGTTGTACTCT+TGG | + | chr7_2:39209415-39209434 | Msa1057430:CDS | 40.0% | |
| ATTGCTCTGGTTGTACTCTT+GGG | + | chr7_2:39209416-39209435 | Msa1057430:CDS | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | - | chr7_2:39209464-39209483 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | - | chr7_2:39209473-39209492 | None:intergenic | 40.0% | |
| CACACGGAAATGAAACAAAC+AGG | - | chr7_2:39209669-39209688 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | + | chr7_2:39209813-39209832 | Msa1057430:intron | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | - | chr7_2:39209858-39209877 | None:intergenic | 40.0% |
| TCATCAACATATCGGCATCA+GGG | + | chr7_2:39209858-39209877 | Msa1057430:CDS | 40.0% | |
| AGAAAGTGAACTGGGAAACT+TGG | + | chr7_2:39210004-39210023 | Msa1057430:three_prime_UTR | 40.0% | |
| ATCTCAACACGCCATATCAT+AGG | - | chr7_2:39210197-39210216 | None:intergenic | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | + | chr7_2:39210302-39210321 | Msa1057430:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | + | chr7_2:39210303-39210322 | Msa1057430:intron | 40.0% | |
| ATCAGTGATGATAAGCTAGC+AGG | + | chr7_2:39210444-39210463 | Msa1057430:three_prime_UTR | 40.0% | |
| TCAGTGATGATAAGCTAGCA+GGG | + | chr7_2:39210445-39210464 | Msa1057430:three_prime_UTR | 40.0% | |
| TAAGCTAGCAGGGAATTAAG+AGG | + | chr7_2:39210455-39210474 | Msa1057430:three_prime_UTR | 40.0% | |
| TAGCAGGGAATTAAGAGGTA+TGG | + | chr7_2:39210460-39210479 | Msa1057430:intron | 40.0% | |
| TTACTAGTGACCACTAGTGT+TGG | + | chr7_2:39210988-39211007 | Msa1057430:intron | 40.0% | |
| TACTAGTGACCACTAGTGTT+GGG | + | chr7_2:39210989-39211008 | Msa1057430:intron | 40.0% | |
| TTGAGGCTTCTTCATCACAT+TGG | - | chr7_2:39211234-39211253 | None:intergenic | 40.0% | |
| GTATTCGGGAGATATTCTTG+AGG | - | chr7_2:39211251-39211270 | None:intergenic | 40.0% | |
| ACAAAGGCGATGAGAAAAGC+TGG | - | chr7_2:39208957-39208976 | None:intergenic | 45.0% | |
| TCAAGAGCAAGAACTGGAAC+AGG | - | chr7_2:39208984-39209003 | None:intergenic | 45.0% | |
| CCAGTTCTTGCTCTTGACAT+CGG | + | chr7_2:39208987-39209006 | Msa1057430:CDS | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | + | chr7_2:39209159-39209178 | Msa1057430:intron | 45.0% |
| GGATCTTAAGCCATGTTGGA+TGG | - | chr7_2:39209260-39209279 | None:intergenic | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | - | chr7_2:39209859-39209878 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | + | chr7_2:39209857-39209876 | Msa1057430:CDS | 45.0% | |
| GTGAACTGGGAAACTTGGAT+AGG | + | chr7_2:39210009-39210028 | Msa1057430:three_prime_UTR | 45.0% | |
| TCTTGACAAGTGACAAGAGC+AGG | + | chr7_2:39210349-39210368 | Msa1057430:three_prime_UTR | 45.0% | |
| AGAGCAGGAATGTTGTGTGT+AGG | + | chr7_2:39210364-39210383 | Msa1057430:three_prime_UTR | 45.0% | |
| GAGCAGGAATGTTGTGTGTA+GGG | + | chr7_2:39210365-39210384 | Msa1057430:three_prime_UTR | 45.0% | |
| ! | GGCTTGTCTTTGATGGCTAT+TGG | + | chr7_2:39210748-39210767 | Msa1057430:intron | 45.0% |
| TTGATTGTGCCCAACACTAG+TGG | - | chr7_2:39211001-39211020 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGGGCACAATCAA+TGG | + | chr7_2:39211001-39211020 | Msa1057430:intron | 45.0% |
| CAGGCATAAGCAAGTGATGT+AGG | + | chr7_2:39211195-39211214 | Msa1057430:intron | 45.0% | |
| ACACGGTGGAAAACTGGAAC+AGG | - | chr7_2:39208894-39208913 | None:intergenic | 50.0% | |
| GGAACAACACGGTGGAAAAC+TGG | - | chr7_2:39208900-39208919 | None:intergenic | 50.0% | |
| CCGATGTCAAGAGCAAGAAC+TGG | - | chr7_2:39208990-39209009 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGGTATTGCTC+TGG | + | chr7_2:39209403-39209422 | Msa1057430:CDS | 50.0% |
| CTCTGGTTGTACTCTTGGGA+AGG | + | chr7_2:39209420-39209439 | Msa1057430:CDS | 50.0% | |
| ATATCGGCATCAGGGCAACT+TGG | + | chr7_2:39209866-39209885 | Msa1057430:CDS | 50.0% | |
| CTGGAACAGGAACAACACGG+TGG | - | chr7_2:39208908-39208927 | None:intergenic | 55.0% | |
| !! | ACTGTTGGTGCTGGTGTTGC+TGG | + | chr7_2:39209392-39209411 | Msa1057430:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 39208826 | 39211392 | 39208826 | ID=Msa1057430;Name=Msa1057430 |
| chr7_2 | mRNA | 39208826 | 39211392 | 39208826 | ID=Msa1057430-mRNA-1;Parent=Msa1057430;Name=Msa1057430-mRNA-1;_AED=0.17;_eAED=0.30;_QI=0|0.71|0.75|1|0.57|0.62|8|488|101 |
| chr7_2 | exon | 39208826 | 39208862 | 39208826 | ID=Msa1057430-mRNA-1:exon:7325;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39208928 | 39209017 | 39208928 | ID=Msa1057430-mRNA-1:exon:7326;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39209348 | 39209441 | 39209348 | ID=Msa1057430-mRNA-1:exon:7327;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39209817 | 39209887 | 39209817 | ID=Msa1057430-mRNA-1:exon:7328;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39209959 | 39210030 | 39209959 | ID=Msa1057430-mRNA-1:exon:7329;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39210157 | 39210238 | 39210157 | ID=Msa1057430-mRNA-1:exon:7330;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39210324 | 39210476 | 39210324 | ID=Msa1057430-mRNA-1:exon:7331;Parent=Msa1057430-mRNA-1 |
| chr7_2 | exon | 39211198 | 39211392 | 39211198 | ID=Msa1057430-mRNA-1:exon:7332;Parent=Msa1057430-mRNA-1 |
| chr7_2 | CDS | 39208826 | 39208862 | 39208826 | ID=Msa1057430-mRNA-1:cds;Parent=Msa1057430-mRNA-1 |
| chr7_2 | CDS | 39208928 | 39209017 | 39208928 | ID=Msa1057430-mRNA-1:cds;Parent=Msa1057430-mRNA-1 |
| chr7_2 | CDS | 39209348 | 39209441 | 39209348 | ID=Msa1057430-mRNA-1:cds;Parent=Msa1057430-mRNA-1 |
| chr7_2 | CDS | 39209817 | 39209887 | 39209817 | ID=Msa1057430-mRNA-1:cds;Parent=Msa1057430-mRNA-1 |
| chr7_2 | CDS | 39209959 | 39209972 | 39209959 | ID=Msa1057430-mRNA-1:cds;Parent=Msa1057430-mRNA-1 |
| chr7_2 | three_prime_UTR | 39209973 | 39210030 | 39209973 | ID=Msa1057430-mRNA-1:three_prime_utr;Parent=Msa1057430-mRNA-1 |
| chr7_2 | three_prime_UTR | 39210157 | 39210238 | 39210157 | ID=Msa1057430-mRNA-1:three_prime_utr;Parent=Msa1057430-mRNA-1 |
| chr7_2 | three_prime_UTR | 39210324 | 39210476 | 39210324 | ID=Msa1057430-mRNA-1:three_prime_utr;Parent=Msa1057430-mRNA-1 |
| chr7_2 | three_prime_UTR | 39211198 | 39211392 | 39211198 | ID=Msa1057430-mRNA-1:three_prime_utr;Parent=Msa1057430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
