Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0704800 | Msa0793420 | 0.802024 | 6.827426e-49 | -8.615850e-47 |
| Msa0744090 | Msa0793420 | 0.802929 | 4.442669e-49 | -8.615850e-47 |
| Msa0756930 | Msa0793420 | 0.806729 | 7.142220e-50 | -8.615850e-47 |
| Msa0793420 | Msa0795660 | 0.819667 | 1.029830e-52 | -8.615850e-47 |
| Msa0793420 | Msa0825280 | 0.800274 | 1.556607e-48 | -8.615850e-47 |
| Msa0793420 | Msa0832820 | 0.838241 | 3.231570e-57 | -8.615850e-47 |
| Msa0793420 | Msa0869010 | 0.801158 | 1.027656e-48 | -8.615850e-47 |
| Msa0793420 | Msa0888940 | 0.810529 | 1.101689e-50 | -8.615850e-47 |
| Msa0793420 | Msa0980940 | 0.807184 | 5.722465e-50 | -8.615850e-47 |
| Msa0793420 | Msa1057420 | 0.886751 | 2.604304e-72 | -8.615850e-47 |
| Msa0793420 | Msa1057430 | 0.909773 | 3.929443e-82 | -8.615850e-47 |
| Msa0793420 | Msa1192850 | 0.800966 | 1.124758e-48 | -8.615850e-47 |
| Msa0431770 | Msa0793420 | 0.801897 | 7.248809e-49 | -8.615850e-47 |
| Msa0322590 | Msa0793420 | 0.800586 | 1.344422e-48 | -8.615850e-47 |
| Msa0323510 | Msa0793420 | 0.820714 | 5.928928e-53 | -8.615850e-47 |
| Msa0332750 | Msa0793420 | 0.821062 | 4.929944e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 5_3:-5401375 | Msa0793420:CDS |
| TTAGTGTTCTGTTGCAAATC+AGG | 0.302736 | 5_3:-5400550 | Msa0793420:intron |
| CGATGTAGGCGAAGTTAATT+CGG | 0.329255 | 5_3:-5401427 | Msa0793420:intron |
| TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 5_3:-5401352 | Msa0793420:CDS |
| AGAAAGTGAATTGGGAAACT+TGG | 0.386832 | 5_3:-5400763 | Msa0793420:three_prime_UTR |
| AAAGGTGGTTTCCTATGATA+TGG | 0.387309 | 5_3:-5400584 | Msa0793420:three_prime_UTR |
| TTCATCACATTGGCAATCAT+TGG | 0.392408 | 5_3:+5399554 | None:intergenic |
| GGGTTCAATTTCATTGATGA+TGG | 0.393070 | 5_3:+5401928 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.407565 | 5_3:-5400910 | Msa0793420:CDS |
| AAAAGTTGAGAAAGTGAATT+GGG | 0.425338 | 5_3:-5400771 | Msa0793420:three_prime_UTR |
| ATCTCAACACGCCATATCAT+AGG | 0.436205 | 5_3:+5400573 | None:intergenic |
| ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 5_3:-5401351 | Msa0793420:CDS |
| TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 5_3:-5401364 | Msa0793420:CDS |
| AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 5_3:-5401384 | Msa0793420:CDS |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 5_3:-5400917 | Msa0793420:CDS |
| TCAAGAGCAAGAACTGGAAC+AGG | 0.482132 | 5_3:+5401786 | None:intergenic |
| CCAGTTCTTGCTCTTGACAT+CGG | 0.484096 | 5_3:-5401780 | Msa0793420:CDS |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 5_3:-5400954 | Msa0793420:intron |
| CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 5_3:-5401347 | Msa0793420:intron |
| CCGATGTCAAGAGCAAGAAC+TGG | 0.503027 | 5_3:+5401780 | None:intergenic |
| ATCAGTGATGATAAGCTAGC+AGG | 0.503324 | 5_3:-5400331 | Msa0793420:three_prime_UTR |
| GAGCAGGAATGTTGTGTGTA+GGG | 0.507902 | 5_3:-5400410 | Msa0793420:three_prime_UTR |
| CAGGCATAAGCAAGTGATGT+AGG | 0.511195 | 5_3:-5399580 | Msa0793420:three_prime_UTR |
| GGTTCAATTTCATTGATGAT+GGG | 0.521972 | 5_3:+5401929 | None:intergenic |
| TCTTGACAAGTGACAAGAGC+AGG | 0.523090 | 5_3:-5400426 | Msa0793420:three_prime_UTR |
| ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 5_3:-5400901 | Msa0793420:intron |
| TTGAGGCTTCTTCATCACAT+TGG | 0.542685 | 5_3:+5399544 | None:intergenic |
| AGAGCAGGAATGTTGTGTGT+AGG | 0.557288 | 5_3:-5400411 | Msa0793420:three_prime_UTR |
| ACAAAGGCGATGAGAAAAGC+TGG | 0.582423 | 5_3:+5401813 | None:intergenic |
| TCAGTGATGATAAGCTAGCA+GGG | 0.587456 | 5_3:-5400330 | Msa0793420:three_prime_UTR |
| TAAGCTAGCAGGGAATTAAG+AGG | 0.588536 | 5_3:-5400320 | Msa0793420:intron |
| TAATTAGAGTTACTCAAAGG+TGG | 0.588769 | 5_3:-5400599 | Msa0793420:three_prime_UTR |
| GATGCTAATGTTATCACTGT+TGG | 0.589755 | 5_3:-5401390 | Msa0793420:CDS |
| TCATCAACATATCGGCATCA+GGG | 0.604907 | 5_3:-5400909 | Msa0793420:CDS |
| GTCTAATTAGAGTTACTCAA+AGG | 0.623856 | 5_3:-5400602 | Msa0793420:three_prime_UTR |
| AACTGGAACAGGAACAACAA+AGG | 0.628523 | 5_3:+5401797 | None:intergenic |
| GTGAATTGGGAAACTTGGAT+AGG | 0.638935 | 5_3:-5400758 | Msa0793420:intron |
| CTGATGCCGATATGTTGATG+AGG | 0.666580 | 5_3:+5400911 | None:intergenic |
| GTATTCGGGAGATATTCTTG+AGG | 0.675734 | 5_3:+5399527 | None:intergenic |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 5_3:+5400912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTGATTTTATATTT+GGG | - | chr5_3:5400355-5400374 | Msa0793420:three_prime_UTR | 10.0% |
| !!! | GTAATAATTATTTTACAATA+TGG | - | chr5_3:5401298-5401317 | Msa0793420:intron | 10.0% |
| !!! | TTTATATAATTTTTTCCTAA+AGG | - | chr5_3:5401364-5401383 | Msa0793420:CDS | 10.0% |
| !! | TTACTGGATTTATTATATTT+AGG | - | chr5_3:5399703-5399722 | Msa0793420:intron | 15.0% |
| !! | TACTGGATTTATTATATTTA+GGG | - | chr5_3:5399704-5399723 | Msa0793420:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | - | chr5_3:5400079-5400098 | Msa0793420:intron | 15.0% |
| !!! | CTATAGATTGATTTTATATT+TGG | - | chr5_3:5400354-5400373 | Msa0793420:three_prime_UTR | 15.0% |
| !!! | AAAATCTTTTACAAGATTTA+GGG | + | chr5_3:5401495-5401514 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTACAAGATTT+AGG | + | chr5_3:5401496-5401515 | None:intergenic | 15.0% |
| !! | ACTGGATTTATTATATTTAG+GGG | - | chr5_3:5399705-5399724 | Msa0793420:intron | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | + | chr5_3:5400264-5400283 | None:intergenic | 20.0% |
| !!! | AGTATTTTAGTTACAATTCT+TGG | - | chr5_3:5400707-5400726 | Msa0793420:intron | 20.0% |
| !!! | TGCATATTTTTTTTTGCATA+TGG | - | chr5_3:5400840-5400859 | Msa0793420:intron | 20.0% |
| !!! | ATAAATTTTCTCCATTGAAA+AGG | + | chr5_3:5401180-5401199 | None:intergenic | 20.0% |
| !! | TTCATAAAATTACATCCTTT+AGG | + | chr5_3:5401382-5401401 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTACTATTGTAC+AGG | - | chr5_3:5401747-5401766 | Msa0793420:intron | 20.0% |
| !!! | ACAATGACTTTTATTGTATT+CGG | + | chr5_3:5401837-5401856 | None:intergenic | 20.0% |
| !! | AAAATCTGGAACTTAACTAA+CGG | + | chr5_3:5399443-5399462 | None:intergenic | 25.0% |
| ! | AAAATAATTCTGATGAGATG+AGG | + | chr5_3:5399685-5399704 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | - | chr5_3:5399687-5399706 | Msa0793420:intron | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | - | chr5_3:5399870-5399889 | Msa0793420:intron | 25.0% |
| ! | GTTAATTCGGAAAAATTCAA+CGG | - | chr5_3:5399932-5399951 | Msa0793420:intron | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | - | chr5_3:5400024-5400043 | Msa0793420:intron | 25.0% |
| ! | AATGAAACAAACAGGAAAAT+AGG | + | chr5_3:5400240-5400259 | None:intergenic | 25.0% |
| ! | AAGTGAGAATAATAAAGACA+AGG | + | chr5_3:5400504-5400523 | None:intergenic | 25.0% |
| !! | GTCTTTATTATTCTCACTTT+TGG | - | chr5_3:5400505-5400524 | Msa0793420:intron | 25.0% |
| !! | ATTCACTTTCTCAACTTTTT+GGG | + | chr5_3:5400574-5400593 | None:intergenic | 25.0% |
| !! | AATTCACTTTCTCAACTTTT+TGG | + | chr5_3:5400575-5400594 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAGAAAGTGAAT+TGG | - | chr5_3:5400574-5400593 | Msa0793420:three_prime_UTR | 25.0% |
| ! | AAAAGTTGAGAAAGTGAATT+GGG | - | chr5_3:5400575-5400594 | Msa0793420:three_prime_UTR | 25.0% |
| !! | AAATATGCATAAAAAAGTGC+AGG | + | chr5_3:5400829-5400848 | None:intergenic | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | - | chr5_3:5400858-5400877 | Msa0793420:intron | 25.0% |
| !!! | CTCTATTTTTTGCTGATTAA+TGG | - | chr5_3:5400964-5400983 | Msa0793420:intron | 25.0% |
| !!! | GAAGAGTTTAATTTGTTTTG+TGG | - | chr5_3:5401060-5401079 | Msa0793420:intron | 25.0% |
| !! | AGTTTCTTTAACCTTTTCAA+TGG | - | chr5_3:5401166-5401185 | Msa0793420:intron | 25.0% |
| ! | TTATCAGCTTCATTACTAAA+CGG | - | chr5_3:5401196-5401215 | Msa0793420:intron | 25.0% |
| !!! | TTATGTGACATTCAAGTTTT+AGG | + | chr5_3:5401419-5401438 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | - | chr5_3:5401702-5401721 | Msa0793420:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+GGG | + | chr5_3:5401836-5401855 | None:intergenic | 25.0% |
| ! | GGTTCAATTTCATTGATGAT+GGG | + | chr5_3:5399420-5399439 | None:intergenic | 30.0% |
| ! | AAATCTGGAACTTAACTAAC+GGG | + | chr5_3:5399442-5399461 | None:intergenic | 30.0% |
| ! | GTTAAGTTCCAGATTTTCAA+TGG | - | chr5_3:5399446-5399465 | Msa0793420:three_prime_UTR | 30.0% |
| ! | AAATCAACAAAATCTGGAAC+AGG | + | chr5_3:5399500-5399519 | None:intergenic | 30.0% |
| TGAACAAACATGATGAAAAG+AGG | + | chr5_3:5399629-5399648 | None:intergenic | 30.0% | |
| AAGTTCGTTCAATCACAAAT+GGG | - | chr5_3:5399648-5399667 | Msa0793420:intron | 30.0% | |
| ATATTTAGGGGATAGAATGA+AGG | - | chr5_3:5399717-5399736 | Msa0793420:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | + | chr5_3:5399860-5399879 | None:intergenic | 30.0% |
| GTCTAATTAGAGTTACTCAA+AGG | - | chr5_3:5400744-5400763 | Msa0793420:intron | 30.0% | |
| TAATTAGAGTTACTCAAAGG+TGG | - | chr5_3:5400747-5400766 | Msa0793420:intron | 30.0% | |
| ! | GAATTAAGAGGTATGGATTA+TGG | - | chr5_3:5401038-5401057 | Msa0793420:intron | 30.0% |
| ! | GGTTAGTTAGTTGAATAAGA+TGG | - | chr5_3:5401081-5401100 | Msa0793420:intron | 30.0% |
| !!! | CTAGCTATACTGTTGTTTTA+AGG | - | chr5_3:5401249-5401268 | Msa0793420:intron | 30.0% |
| GGGTTCAATTTCATTGATGA+TGG | + | chr5_3:5399421-5399440 | None:intergenic | 35.0% | |
| ! | AATCTGGAACTTAACTAACG+GGG | + | chr5_3:5399441-5399460 | None:intergenic | 35.0% |
| ACGCGAAAATCAACAAAATC+TGG | + | chr5_3:5399506-5399525 | None:intergenic | 35.0% | |
| CAAGTTCGTTCAATCACAAA+TGG | - | chr5_3:5399647-5399666 | Msa0793420:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | - | chr5_3:5399734-5399753 | Msa0793420:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | - | chr5_3:5399735-5399754 | Msa0793420:intron | 35.0% |
| ATTGTGACGATTATCGATGT+AGG | - | chr5_3:5399905-5399924 | Msa0793420:intron | 35.0% | |
| GATGCTAATGTTATCACTGT+TGG | - | chr5_3:5399956-5399975 | Msa0793420:intron | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | + | chr5_3:5400193-5400212 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | - | chr5_3:5400429-5400448 | Msa0793420:three_prime_UTR | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | + | chr5_3:5400484-5400503 | None:intergenic | 35.0% | |
| !! | TCTCACTTTTGGTTAAATGC+AGG | - | chr5_3:5400516-5400535 | Msa0793420:intron | 35.0% |
| AGAAAGTGAATTGGGAAACT+TGG | - | chr5_3:5400583-5400602 | Msa0793420:three_prime_UTR | 35.0% | |
| AAAGGTGGTTTCCTATGATA+TGG | - | chr5_3:5400762-5400781 | Msa0793420:three_prime_UTR | 35.0% | |
| TTAGTGTTCTGTTGCAAATC+AGG | - | chr5_3:5400796-5400815 | Msa0793420:three_prime_UTR | 35.0% | |
| TTCATATGCTTCATCACTTG+AGG | + | chr5_3:5401112-5401131 | None:intergenic | 35.0% | |
| GGTAATCCTCGTTGTAATTA+AGG | - | chr5_3:5401217-5401236 | Msa0793420:intron | 35.0% | |
| TCAAGTCCTTAATTACAACG+AGG | + | chr5_3:5401226-5401245 | None:intergenic | 35.0% | |
| ! | ACAATATGGCTTGTCTTTGA+TGG | - | chr5_3:5401312-5401331 | Msa0793420:intron | 35.0% |
| !!! | GACATTCAAGTTTTAGGTCA+CGG | + | chr5_3:5401413-5401432 | None:intergenic | 35.0% |
| TGTCACATAAAATCATGCAC+AGG | - | chr5_3:5401429-5401448 | Msa0793420:intron | 35.0% | |
| CAAATGTGATGTAGAACAGA+AGG | - | chr5_3:5401622-5401641 | Msa0793420:intron | 35.0% | |
| TTCATCACATTGGCAATCAT+TGG | + | chr5_3:5401795-5401814 | None:intergenic | 35.0% | |
| GAACAGGACCATTGAAAATC+TGG | + | chr5_3:5399457-5399476 | None:intergenic | 40.0% | |
| ! | AATCTGGAACAGGAACAACA+CGG | + | chr5_3:5399490-5399509 | None:intergenic | 40.0% |
| AACTGGAACAGGAACAACAA+AGG | + | chr5_3:5399552-5399571 | None:intergenic | 40.0% | |
| !!! | ATTCTTGTGTTTTGGGAGGT+AGG | - | chr5_3:5399742-5399761 | Msa0793420:intron | 40.0% |
| TTGGGAGGTAGGAGTAAAAA+TGG | - | chr5_3:5399753-5399772 | Msa0793420:intron | 40.0% | |
| GTTGGATGGCAAATTCTTGT+TGG | + | chr5_3:5399825-5399844 | None:intergenic | 40.0% | |
| CAAGAATTTGCCATCCAACA+TGG | - | chr5_3:5399826-5399845 | Msa0793420:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | + | chr5_3:5399843-5399862 | None:intergenic | 40.0% | |
| CGATGTAGGCGAAGTTAATT+CGG | - | chr5_3:5399919-5399938 | Msa0793420:intron | 40.0% | |
| AATGTTATCACTGTTGGTGC+TGG | - | chr5_3:5399962-5399981 | Msa0793420:intron | 40.0% | |
| TATTGCTCTGGTTGTACTCT+TGG | - | chr5_3:5399994-5400013 | Msa0793420:intron | 40.0% | |
| ATTGCTCTGGTTGTACTCTT+GGG | - | chr5_3:5399995-5400014 | Msa0793420:intron | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | + | chr5_3:5400043-5400062 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | + | chr5_3:5400052-5400071 | None:intergenic | 40.0% | |
| CACACGGAAATGAAACAAAC+AGG | + | chr5_3:5400248-5400267 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | - | chr5_3:5400392-5400411 | Msa0793420:three_prime_UTR | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | + | chr5_3:5400437-5400456 | None:intergenic | 40.0% |
| TCATCAACATATCGGCATCA+GGG | - | chr5_3:5400437-5400456 | Msa0793420:three_prime_UTR | 40.0% | |
| GTGAATTGGGAAACTTGGAT+AGG | - | chr5_3:5400588-5400607 | Msa0793420:three_prime_UTR | 40.0% | |
| ATCTCAACACGCCATATCAT+AGG | + | chr5_3:5400776-5400795 | None:intergenic | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | - | chr5_3:5400873-5400892 | Msa0793420:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | - | chr5_3:5400874-5400893 | Msa0793420:intron | 40.0% | |
| ATCAGTGATGATAAGCTAGC+AGG | - | chr5_3:5401015-5401034 | Msa0793420:intron | 40.0% | |
| TCAGTGATGATAAGCTAGCA+GGG | - | chr5_3:5401016-5401035 | Msa0793420:intron | 40.0% | |
| TAAGCTAGCAGGGAATTAAG+AGG | - | chr5_3:5401026-5401045 | Msa0793420:intron | 40.0% | |
| TAGCAGGGAATTAAGAGGTA+TGG | - | chr5_3:5401031-5401050 | Msa0793420:intron | 40.0% | |
| TTACTAGTGACCTCTAGTGT+TGG | - | chr5_3:5401559-5401578 | Msa0793420:intron | 40.0% | |
| TACTAGTGACCTCTAGTGTT+GGG | - | chr5_3:5401560-5401579 | Msa0793420:intron | 40.0% | |
| TTGAGGCTTCTTCATCACAT+TGG | + | chr5_3:5401805-5401824 | None:intergenic | 40.0% | |
| GTATTCGGGAGATATTCTTG+AGG | + | chr5_3:5401822-5401841 | None:intergenic | 40.0% | |
| ACAAAGGCGATGAGAAAAGC+TGG | + | chr5_3:5399536-5399555 | None:intergenic | 45.0% | |
| TCAAGAGCAAGAACTGGAAC+AGG | + | chr5_3:5399563-5399582 | None:intergenic | 45.0% | |
| CCAGTTCTTGCTCTTGACAT+CGG | - | chr5_3:5399566-5399585 | Msa0793420:three_prime_UTR | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | - | chr5_3:5399738-5399757 | Msa0793420:intron | 45.0% |
| GGATCTTAAGCCATGTTGGA+TGG | + | chr5_3:5399839-5399858 | None:intergenic | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | + | chr5_3:5400438-5400457 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | - | chr5_3:5400436-5400455 | Msa0793420:three_prime_UTR | 45.0% | |
| TCTTGACAAGTGACAAGAGC+AGG | - | chr5_3:5400920-5400939 | Msa0793420:CDS | 45.0% | |
| AGAGCAGGAATGTTGTGTGT+AGG | - | chr5_3:5400935-5400954 | Msa0793420:CDS | 45.0% | |
| GAGCAGGAATGTTGTGTGTA+GGG | - | chr5_3:5400936-5400955 | Msa0793420:CDS | 45.0% | |
| ! | GGCTTGTCTTTGATGGCTAT+TGG | - | chr5_3:5401319-5401338 | Msa0793420:intron | 45.0% |
| TTGATTGTGCCCAACACTAG+AGG | + | chr5_3:5401572-5401591 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGGGCACAATCAA+TGG | - | chr5_3:5401572-5401591 | Msa0793420:intron | 45.0% |
| CAGGCATAAGCAAGTGATGT+AGG | - | chr5_3:5401766-5401785 | Msa0793420:intron | 45.0% | |
| ACACGGTGGAAAACTGGAAC+AGG | + | chr5_3:5399473-5399492 | None:intergenic | 50.0% | |
| GGAACAACACGGTGGAAAAC+TGG | + | chr5_3:5399479-5399498 | None:intergenic | 50.0% | |
| CCGATGTCAAGAGCAAGAAC+TGG | + | chr5_3:5399569-5399588 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGGTATTGCTC+TGG | - | chr5_3:5399982-5400001 | Msa0793420:intron | 50.0% |
| CTCTGGTTGTACTCTTGGGA+AGG | - | chr5_3:5399999-5400018 | Msa0793420:intron | 50.0% | |
| ATATCGGCATCAGGGCAACT+TGG | - | chr5_3:5400445-5400464 | Msa0793420:three_prime_UTR | 50.0% | |
| CTGGAACAGGAACAACACGG+TGG | + | chr5_3:5399487-5399506 | None:intergenic | 55.0% | |
| !! | ACTGTTGGTGCTGGTGTTGC+TGG | - | chr5_3:5399971-5399990 | Msa0793420:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5399405 | 5401963 | 5399405 | ID=Msa0793420;Name=Msa0793420 |
| chr5_3 | mRNA | 5399405 | 5401963 | 5399405 | ID=Msa0793420-mRNA-1;Parent=Msa0793420;Name=Msa0793420-mRNA-1;_AED=0.16;_eAED=0.30;_QI=0|0.71|0.75|1|0.57|0.5|8|488|101 |
| chr5_3 | exon | 5399405 | 5399599 | 5399405 | ID=Msa0793420-mRNA-1:exon:2141;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5400321 | 5400473 | 5400321 | ID=Msa0793420-mRNA-1:exon:2140;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5400551 | 5400632 | 5400551 | ID=Msa0793420-mRNA-1:exon:2139;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5400759 | 5400830 | 5400759 | ID=Msa0793420-mRNA-1:exon:2138;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5400902 | 5400972 | 5400902 | ID=Msa0793420-mRNA-1:exon:2137;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5401348 | 5401441 | 5401348 | ID=Msa0793420-mRNA-1:exon:2136;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5401772 | 5401861 | 5401772 | ID=Msa0793420-mRNA-1:exon:2135;Parent=Msa0793420-mRNA-1 |
| chr5_3 | exon | 5401927 | 5401963 | 5401927 | ID=Msa0793420-mRNA-1:exon:2134;Parent=Msa0793420-mRNA-1 |
| chr5_3 | CDS | 5401927 | 5401963 | 5401927 | ID=Msa0793420-mRNA-1:cds;Parent=Msa0793420-mRNA-1 |
| chr5_3 | CDS | 5401772 | 5401861 | 5401772 | ID=Msa0793420-mRNA-1:cds;Parent=Msa0793420-mRNA-1 |
| chr5_3 | CDS | 5401348 | 5401441 | 5401348 | ID=Msa0793420-mRNA-1:cds;Parent=Msa0793420-mRNA-1 |
| chr5_3 | CDS | 5400902 | 5400972 | 5400902 | ID=Msa0793420-mRNA-1:cds;Parent=Msa0793420-mRNA-1 |
| chr5_3 | CDS | 5400817 | 5400830 | 5400817 | ID=Msa0793420-mRNA-1:cds;Parent=Msa0793420-mRNA-1 |
| chr5_3 | three_prime_UTR | 5400759 | 5400816 | 5400759 | ID=Msa0793420-mRNA-1:three_prime_utr;Parent=Msa0793420-mRNA-1 |
| chr5_3 | three_prime_UTR | 5400551 | 5400632 | 5400551 | ID=Msa0793420-mRNA-1:three_prime_utr;Parent=Msa0793420-mRNA-1 |
| chr5_3 | three_prime_UTR | 5400321 | 5400473 | 5400321 | ID=Msa0793420-mRNA-1:three_prime_utr;Parent=Msa0793420-mRNA-1 |
| chr5_3 | three_prime_UTR | 5399405 | 5399599 | 5399405 | ID=Msa0793420-mRNA-1:three_prime_utr;Parent=Msa0793420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
