Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328300 | XP_013463550.2 | 80.588 | 170 | 24 | 2 | 1 | 169 | 313 | 474 | 1.03e-88 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328300 | sp|P33629|TBA_PRUDU | 72.727 | 132 | 36 | 0 | 1 | 132 | 318 | 449 | 3.38e-62 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0246160 | Msa0328300 | 0.809556 | 1.784627e-50 | -8.615850e-47 |
| Msa0319650 | Msa0328300 | 0.835411 | 1.704395e-56 | -8.615850e-47 |
| Msa0328300 | Msa0999120 | 0.803890 | 2.809364e-49 | -8.615850e-47 |
| Msa0328300 | Msa1324720 | 0.807219 | 5.625640e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328300 | MtrunA17_Chr2g0300491 | 86.184 | 152 | 20 | 1 | 1 | 151 | 313 | 464 | 6.89e-92 | 278 |
| Msa0328300 | MtrunA17_Chr2g0300671 | 89.764 | 127 | 13 | 0 | 1 | 127 | 313 | 439 | 2.37e-80 | 248 |
| Msa0328300 | MtrunA17_Chr1g0206881 | 71.212 | 132 | 38 | 0 | 1 | 132 | 318 | 449 | 3.84e-62 | 201 |
| Msa0328300 | MtrunA17_Chr4g0054511 | 78.632 | 117 | 25 | 0 | 1 | 117 | 318 | 434 | 1.89e-61 | 199 |
| Msa0328300 | MtrunA17_Chr3g0140821 | 78.632 | 117 | 25 | 0 | 1 | 117 | 318 | 434 | 2.53e-61 | 199 |
| Msa0328300 | MtrunA17_Chr8g0378821 | 76.068 | 117 | 28 | 0 | 1 | 117 | 318 | 434 | 1.16e-59 | 194 |
| Msa0328300 | MtrunA17_Chr7g0253411 | 75.214 | 117 | 29 | 0 | 1 | 117 | 318 | 434 | 9.93e-59 | 192 |
| Msa0328300 | MtrunA17_Chr6g0461281 | 72.650 | 117 | 32 | 0 | 1 | 117 | 319 | 435 | 1.64e-56 | 186 |
| Msa0328300 | MtrunA17_Chr3g0109241 | 76.136 | 88 | 21 | 0 | 1 | 88 | 51 | 138 | 9.63e-45 | 147 |
| Msa0328300 | MtrunA17_Chr1g0203181 | 30.508 | 118 | 74 | 1 | 1 | 118 | 316 | 425 | 4.06e-16 | 77.0 |
| Msa0328300 | MtrunA17_Chr4g0051631 | 30.508 | 118 | 74 | 1 | 1 | 118 | 316 | 425 | 4.63e-16 | 76.6 |
| Msa0328300 | MtrunA17_Chr8g0386781 | 28.814 | 118 | 76 | 1 | 1 | 118 | 316 | 425 | 7.05e-16 | 76.3 |
| Msa0328300 | MtrunA17_Chr4g0007371 | 29.661 | 118 | 75 | 1 | 1 | 118 | 318 | 427 | 1.34e-15 | 75.5 |
| Msa0328300 | MtrunA17_Chr4g0008361 | 29.661 | 118 | 75 | 1 | 1 | 118 | 316 | 425 | 1.54e-15 | 75.1 |
| Msa0328300 | MtrunA17_Chr4g0008401 | 29.661 | 118 | 75 | 1 | 1 | 118 | 316 | 425 | 1.66e-15 | 75.1 |
| Msa0328300 | MtrunA17_Chr2g0292921 | 29.661 | 118 | 75 | 1 | 1 | 118 | 316 | 425 | 2.04e-15 | 74.7 |
| Msa0328300 | MtrunA17_Chr3g0142731 | 28.814 | 118 | 76 | 1 | 1 | 118 | 318 | 427 | 3.48e-15 | 74.3 |
| Msa0328300 | MtrunA17_Chr7g0255791 | 29.661 | 118 | 75 | 2 | 1 | 118 | 316 | 425 | 1.38e-14 | 72.4 |
| Msa0328300 | MtrunA17_Chr8g0393021 | 27.778 | 126 | 81 | 2 | 1 | 124 | 317 | 434 | 6.00e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328300 | AT1G50010.1 | 78.632 | 117 | 25 | 0 | 1 | 117 | 318 | 434 | 5.17e-61 | 198 |
| Msa0328300 | AT1G04820.1 | 78.632 | 117 | 25 | 0 | 1 | 117 | 318 | 434 | 5.17e-61 | 198 |
| Msa0328300 | AT4G14960.2 | 78.632 | 117 | 25 | 0 | 1 | 117 | 318 | 434 | 5.45e-61 | 198 |
| Msa0328300 | AT5G19780.1 | 76.923 | 117 | 27 | 0 | 1 | 117 | 318 | 434 | 6.35e-60 | 195 |
| Msa0328300 | AT5G19770.1 | 76.923 | 117 | 27 | 0 | 1 | 117 | 318 | 434 | 6.35e-60 | 195 |
| Msa0328300 | AT1G64740.1 | 74.359 | 117 | 30 | 0 | 1 | 117 | 318 | 434 | 9.23e-59 | 192 |
| Msa0328300 | AT4G14960.1 | 72.464 | 69 | 19 | 0 | 1 | 69 | 318 | 386 | 1.32e-27 | 109 |
| Msa0328300 | AT2G29550.1 | 29.032 | 124 | 80 | 1 | 1 | 124 | 316 | 431 | 4.02e-16 | 77.4 |
| Msa0328300 | AT5G23860.2 | 30.508 | 118 | 74 | 1 | 1 | 118 | 316 | 425 | 5.60e-16 | 77.0 |
| Msa0328300 | AT5G23860.1 | 30.508 | 118 | 74 | 1 | 1 | 118 | 316 | 425 | 5.60e-16 | 77.0 |
| Msa0328300 | AT1G75780.1 | 28.814 | 118 | 76 | 1 | 1 | 118 | 317 | 426 | 8.81e-16 | 76.3 |
| Msa0328300 | AT5G62690.1 | 29.661 | 118 | 75 | 1 | 1 | 118 | 316 | 425 | 1.08e-15 | 76.3 |
| Msa0328300 | AT5G62700.1 | 29.661 | 118 | 75 | 1 | 1 | 118 | 316 | 425 | 1.08e-15 | 76.3 |
| Msa0328300 | AT1G20010.1 | 27.966 | 118 | 77 | 1 | 1 | 118 | 317 | 426 | 1.24e-14 | 73.2 |
| Msa0328300 | AT5G12250.1 | 29.661 | 118 | 75 | 2 | 1 | 118 | 316 | 425 | 2.10e-14 | 72.4 |
| Msa0328300 | AT5G44340.1 | 28.814 | 118 | 76 | 2 | 1 | 118 | 316 | 425 | 6.28e-14 | 70.9 |
| Msa0328300 | AT4G20890.1 | 27.966 | 118 | 77 | 1 | 1 | 118 | 316 | 425 | 8.99e-14 | 70.5 |
Find 48 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGACATTACAGCTTA+TGG | 0.214177 | 2_4:-40509196 | Msa0328300:CDS |
| AGGAATCTTTCAACAATATA+TGG | 0.247016 | 2_4:-40509524 | Msa0328300:CDS |
| CATCCTCCAACTGTTGTTCC+TGG | 0.304673 | 2_4:-40511861 | Msa0328300:CDS |
| ACATGTAGCAAAACTTCTTT+TGG | 0.309825 | 2_4:+40509313 | None:intergenic |
| GATCGATAAATTTCAACTTC+TGG | 0.325737 | 2_4:+40509224 | None:intergenic |
| CGCCCTACTCTAGTGATACT+TGG | 0.345169 | 2_4:-40511626 | Msa0328300:CDS |
| AAATCAAACCCTTCAATTTG+TGG | 0.348538 | 2_4:-40511922 | Msa0328300:CDS |
| ATCAAGTGCAGAAGGGTTGC+AGG | 0.351349 | 2_4:-40509498 | Msa0328300:intron |
| TCTTGTTGTTTGATGTATCA+TGG | 0.371239 | 2_4:-40511993 | None:intergenic |
| CTGGTATGTGTGTGAGGGTA+TGG | 0.423994 | 2_4:-40511715 | Msa0328300:CDS |
| CTTTGTTTGCAAGAGTCCTT+CGG | 0.428908 | 2_4:-40508474 | Msa0328300:CDS |
| AAACCCTTCAATTTGTGGAT+TGG | 0.430531 | 2_4:-40511917 | Msa0328300:CDS |
| TGCTCTCGAGGAGGAGTATG+AGG | 0.466608 | 2_4:-40511655 | Msa0328300:CDS |
| ATCGAACTTATGATCAATCC+TGG | 0.473677 | 2_4:+40511767 | None:intergenic |
| AACACCAATCCACAAATTGA+AGG | 0.502009 | 2_4:+40511913 | None:intergenic |
| ACCATAAGCTGTAATGTCAA+AGG | 0.502893 | 2_4:+40509195 | None:intergenic |
| CCATAAGCTGTAATGTCAAA+GGG | 0.510424 | 2_4:+40509196 | None:intergenic |
| CCAGTGCACAAAAGCACGCT+TGG | 0.524306 | 2_4:+40511734 | None:intergenic |
| GTGATCTTGCCAAGGTGCAG+AGG | 0.524868 | 2_4:-40511836 | Msa0328300:CDS |
| TATGGTTTATCAAGTGCAGA+AGG | 0.536979 | 2_4:-40509506 | Msa0328300:CDS |
| ACACCAATCCACAAATTGAA+GGG | 0.539639 | 2_4:+40511914 | None:intergenic |
| GTGTGTGAGGGTATGGAAGA+AGG | 0.547203 | 2_4:-40511708 | Msa0328300:CDS |
| TCCTGGTGGTGATCTTGCCA+AGG | 0.548720 | 2_4:-40511844 | Msa0328300:CDS |
| TTCCCAAGTATCACTAGAGT+AGG | 0.553967 | 2_4:+40511623 | None:intergenic |
| CCACCAGGAACAACAGTTGG+AGG | 0.556528 | 2_4:+40511858 | None:intergenic |
| TCACCACCAGGAACAACAGT+TGG | 0.562091 | 2_4:+40511855 | None:intergenic |
| GGAAAACACTTGAGCAACAC+TGG | 0.569938 | 2_4:+40511788 | None:intergenic |
| TGTGCACTGGTATGTGTGTG+AGG | 0.578974 | 2_4:-40511721 | Msa0328300:CDS |
| TGAGGATCTTGCTGCTCTCG+AGG | 0.580308 | 2_4:-40511667 | Msa0328300:CDS |
| AGTTCGTTCATATTTGCCGA+AGG | 0.583482 | 2_4:+40508458 | None:intergenic |
| TGATCTTGCCAAGGTGCAGA+GGG | 0.583911 | 2_4:-40511835 | Msa0328300:CDS |
| TCCTACAGCCCTCTGCACCT+TGG | 0.585062 | 2_4:+40511827 | None:intergenic |
| GCCAAGGTGCAGAGGGCTGT+AGG | 0.585778 | 2_4:-40511828 | Msa0328300:CDS |
| GTGCACTGGTATGTGTGTGA+GGG | 0.593925 | 2_4:-40511720 | Msa0328300:CDS |
| GGAAGAAGGTGAGTTATCAC+AGG | 0.598693 | 2_4:-40511694 | Msa0328300:CDS |
| CCTCCAACTGTTGTTCCTGG+TGG | 0.599359 | 2_4:-40511858 | Msa0328300:CDS |
| TGTTCAACTAAGTACAAGGC+AGG | 0.599372 | 2_4:-40511894 | Msa0328300:CDS |
| GCCCTACTCTAGTGATACTT+GGG | 0.605167 | 2_4:-40511625 | Msa0328300:CDS |
| TCCCAAGTATCACTAGAGTA+GGG | 0.611067 | 2_4:+40511624 | None:intergenic |
| TGAAGATCGAAGCACACCCC+AGG | 0.616996 | 2_4:-40508436 | None:intergenic |
| TGAGTTATCACAGGCTCGTG+AGG | 0.622873 | 2_4:-40511685 | Msa0328300:CDS |
| ATGGTTTATCAAGTGCAGAA+GGG | 0.627461 | 2_4:-40509505 | Msa0328300:CDS |
| TTGGTGTTCAACTAAGTACA+AGG | 0.635789 | 2_4:-40511898 | Msa0328300:CDS |
| TTTGCTACATGTATCTACGA+AGG | 0.636290 | 2_4:-40509302 | Msa0328300:CDS |
| ACCTTGGCAAGATCACCACC+AGG | 0.670200 | 2_4:+40511843 | None:intergenic |
| GGATCTTGCTGCTCTCGAGG+AGG | 0.675941 | 2_4:-40511664 | Msa0328300:CDS |
| TGATATTGTGCATAAAGATG+CGG | 0.695168 | 2_4:-40511970 | Msa0328300:CDS |
| AGTTGAAAGTGATGACTGCG+AGG | 0.710481 | 2_4:-40511601 | Msa0328300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATACAATTTTTTACT+CGG | + | chr2_4:40509526-40509545 | None:intergenic | 10.0% |
| !!! | TTAATAAATGTCATTTTATT+AGG | - | chr2_4:40510812-40510831 | Msa0328300:intron | 10.0% |
| !! | TTAATTAATTCATTAACATT+TGG | - | chr2_4:40511910-40511929 | Msa0328300:CDS | 10.0% |
| !!! | ATTTATACAATTTTTTACTC+GGG | + | chr2_4:40509525-40509544 | None:intergenic | 15.0% |
| !! | TTAAATGAAATTACATGTAT+CGG | - | chr2_4:40510264-40510283 | Msa0328300:intron | 15.0% |
| !!! | TAAATTTTGGTGAATTAAAA+CGG | - | chr2_4:40510703-40510722 | Msa0328300:intron | 15.0% |
| !!! | AAAAAATTATGTGATGCTTT+TGG | - | chr2_4:40509119-40509138 | Msa0328300:intron | 20.0% |
| !! | AAACAATTTAGTACCAAAAA+AGG | + | chr2_4:40509193-40509212 | None:intergenic | 20.0% |
| !! | TATTGATAAGACAATTACTT+CGG | + | chr2_4:40509229-40509248 | None:intergenic | 20.0% |
| !!! | ATTTGCAATGTTTTTAAATC+CGG | - | chr2_4:40509384-40509403 | Msa0328300:intron | 20.0% |
| !! | TATGATTGAACTAGATAAAT+CGG | - | chr2_4:40509482-40509501 | Msa0328300:intron | 20.0% |
| !!! | AATTTGATAATCTATGATGA+TGG | - | chr2_4:40509732-40509751 | Msa0328300:intron | 20.0% |
| !!! | AGATTTAAAGCACTTTTTAT+TGG | - | chr2_4:40510844-40510863 | Msa0328300:intron | 20.0% |
| !!! | GATTTAAAGCACTTTTTATT+GGG | - | chr2_4:40510845-40510864 | Msa0328300:intron | 20.0% |
| !!! | ACATAACAATTTAAGCTTTT+GGG | + | chr2_4:40511342-40511361 | None:intergenic | 20.0% |
| !! | GTAATATAATGCTAATATTC+TGG | - | chr2_4:40511416-40511435 | Msa0328300:intron | 20.0% |
| !!! | AAACAAAGTTTCTAATTTTG+TGG | + | chr2_4:40511563-40511582 | None:intergenic | 20.0% |
| !! | ACAAAATTAGAAACTTTGTT+TGG | - | chr2_4:40511562-40511581 | Msa0328300:CDS | 20.0% |
| !!! | ATTATTTTGTGTAACACAAA+TGG | + | chr2_4:40511635-40511654 | None:intergenic | 20.0% |
| !!! | AAATTTTCATTTTTTGAGTG+AGG | - | chr2_4:40511801-40511820 | Msa0328300:CDS | 20.0% |
| !! | ATGAATTAATTAATGCATAG+TGG | + | chr2_4:40511903-40511922 | None:intergenic | 20.0% |
| ! | ATTTATGTGAACAGAATTGT+GGG | + | chr2_4:40509312-40509331 | None:intergenic | 25.0% |
| ! | TATTTATGTGAACAGAATTG+TGG | + | chr2_4:40509313-40509332 | None:intergenic | 25.0% |
| ! | GTATACCTTAAATGATTTAC+AGG | + | chr2_4:40509623-40509642 | None:intergenic | 25.0% |
| ! | GACATCCTTACATTAAAATA+TGG | + | chr2_4:40509676-40509695 | None:intergenic | 25.0% |
| !! | TTTTAATGTAAGGATGTCTT+CGG | - | chr2_4:40509678-40509697 | Msa0328300:intron | 25.0% |
| ! | GTTGTTATGAAGTACATATA+CGG | - | chr2_4:40509870-40509889 | Msa0328300:intron | 25.0% |
| !!! | CTTCTTGTTTCTTCAATTTT+AGG | - | chr2_4:40510397-40510416 | Msa0328300:intron | 25.0% |
| ! | ACAATTAATCACATTAGTTC+TGG | + | chr2_4:40510539-40510558 | None:intergenic | 25.0% |
| ! | GATTAATTGTCAATTGTTCT+CGG | - | chr2_4:40510549-40510568 | Msa0328300:intron | 25.0% |
| !! | ATTGGACAGTGTTTAAATTT+TGG | - | chr2_4:40510690-40510709 | Msa0328300:intron | 25.0% |
| ! | AGGAATCTTTCAACAATATA+TGG | - | chr2_4:40510894-40510913 | Msa0328300:intron | 25.0% |
| !! | CACATAACAATTTAAGCTTT+TGG | + | chr2_4:40511343-40511362 | None:intergenic | 25.0% |
| ! | CAAAAGCTTAAATTGTTATG+TGG | - | chr2_4:40511341-40511360 | Msa0328300:intron | 25.0% |
| ! | ACATGAATGAAATGCATAAA+AGG | + | chr2_4:40511466-40511485 | None:intergenic | 25.0% |
| TGATATTGTGCATAAAGATG+CGG | - | chr2_4:40508448-40508467 | Msa0328300:CDS | 30.0% | |
| AAATCAAACCCTTCAATTTG+TGG | - | chr2_4:40508496-40508515 | Msa0328300:intron | 30.0% | |
| CTATAGGATCTTGGTTATTT+CGG | - | chr2_4:40508912-40508931 | Msa0328300:intron | 30.0% | |
| ! | TATAGGATCTTGGTTATTTC+GGG | - | chr2_4:40508913-40508932 | Msa0328300:intron | 30.0% |
| ! | TGTTGAAATTGATGACTATG+AGG | - | chr2_4:40508980-40508999 | Msa0328300:intron | 30.0% |
| ACATAAATATTGAGCTTTGC+TGG | - | chr2_4:40509324-40509343 | Msa0328300:CDS | 30.0% | |
| CAACAAAAGAAAAATTGAGC+TGG | - | chr2_4:40509360-40509379 | Msa0328300:intron | 30.0% | |
| !! | CAATGTTTTTAAATCCGGTT+TGG | - | chr2_4:40509389-40509408 | Msa0328300:intron | 30.0% |
| !! | TTTGAAATTTGCACCTGTTT+TGG | + | chr2_4:40509583-40509602 | None:intergenic | 30.0% |
| CAGTTCCTGTAAATCATTTA+AGG | - | chr2_4:40509615-40509634 | Msa0328300:intron | 30.0% | |
| ! | ACGCATATACATTGACTAAA+GGG | + | chr2_4:40509645-40509664 | None:intergenic | 30.0% |
| !!! | GGTGTCCATATTTTAATGTA+AGG | - | chr2_4:40509668-40509687 | Msa0328300:intron | 30.0% |
| ACACTGATGATATAAGATGA+TGG | - | chr2_4:40509822-40509841 | Msa0328300:intron | 30.0% | |
| ACTTCTTCAAAATGAAGTGT+CGG | - | chr2_4:40510101-40510120 | Msa0328300:intron | 30.0% | |
| GATATTACACAATCCTGATA+CGG | - | chr2_4:40510202-40510221 | Msa0328300:intron | 30.0% | |
| !! | TTGCGTTGAAAGTATTGTTA+CGG | - | chr2_4:40510362-40510381 | Msa0328300:intron | 30.0% |
| !! | TTGTTTCTTCAATTTTAGGC+AGG | - | chr2_4:40510401-40510420 | Msa0328300:intron | 30.0% |
| ! | TTGTTCTCGGTTCTTTTAAT+CGG | - | chr2_4:40510562-40510581 | Msa0328300:intron | 30.0% |
| ACAGCAATGTAAACTCTAAA+GGG | + | chr2_4:40510737-40510756 | None:intergenic | 30.0% | |
| AACAGCAATGTAAACTCTAA+AGG | + | chr2_4:40510738-40510757 | None:intergenic | 30.0% | |
| ! | ATTGCTGTTGTATTTGTCAA+TGG | - | chr2_4:40510749-40510768 | Msa0328300:intron | 30.0% |
| TTCGCAGTAGTATCTTAATT+TGG | - | chr2_4:40510970-40510989 | Msa0328300:intron | 30.0% | |
| ! | ACATGTAGCAAAACTTCTTT+TGG | + | chr2_4:40511108-40511127 | None:intergenic | 30.0% |
| ! | AATCATTGATGTGTTTTCTC+AGG | - | chr2_4:40511155-40511174 | Msa0328300:intron | 30.0% |
| ! | ATCATTGATGTGTTTTCTCA+GGG | - | chr2_4:40511156-40511175 | Msa0328300:intron | 30.0% |
| GATCGATAAATTTCAACTTC+TGG | + | chr2_4:40511197-40511216 | None:intergenic | 30.0% | |
| GAAGTCAATTGATACATATG+TGG | - | chr2_4:40511294-40511313 | Msa0328300:intron | 30.0% | |
| !!! | TTTAAGCTTTTGGGTTGATT+TGG | + | chr2_4:40511333-40511352 | None:intergenic | 30.0% |
| ! | AAATGCATAAAAGGTACACT+AGG | + | chr2_4:40511457-40511476 | None:intergenic | 30.0% |
| ! | ACATCAAACATTGTGTTTTC+TGG | - | chr2_4:40511526-40511545 | Msa0328300:intron | 30.0% |
| ACACAAATGGAATGCATAAA+AGG | + | chr2_4:40511622-40511641 | None:intergenic | 30.0% | |
| ATTTGCAAACACTATGTTCT+TGG | - | chr2_4:40511671-40511690 | Msa0328300:CDS | 30.0% | |
| !! | AAATGGCTTTGTTGCAATAT+CGG | - | chr2_4:40511773-40511792 | Msa0328300:CDS | 30.0% |
| !!! | TTTTCATTTTTTGAGTGAGG+AGG | - | chr2_4:40511804-40511823 | Msa0328300:CDS | 30.0% |
| AAACCCTTCAATTTGTGGAT+TGG | - | chr2_4:40508501-40508520 | Msa0328300:intron | 35.0% | |
| ACACCAATCCACAAATTGAA+GGG | + | chr2_4:40508507-40508526 | None:intergenic | 35.0% | |
| AACACCAATCCACAAATTGA+AGG | + | chr2_4:40508508-40508527 | None:intergenic | 35.0% | |
| ! | TTGGTGTTCAACTAAGTACA+AGG | - | chr2_4:40508520-40508539 | Msa0328300:intron | 35.0% |
| ATCGAACTTATGATCAATCC+TGG | + | chr2_4:40508654-40508673 | None:intergenic | 35.0% | |
| TTATTTCGGGAAGGATTATG+AGG | - | chr2_4:40508926-40508945 | Msa0328300:intron | 35.0% | |
| AATAGATGAGCAACTCACTT+TGG | + | chr2_4:40509266-40509285 | None:intergenic | 35.0% | |
| TCATCTATTTCGATGGTGTT+AGG | - | chr2_4:40509277-40509296 | Msa0328300:CDS | 35.0% | |
| ACTAGATAAATCGGATGACT+CGG | - | chr2_4:40509491-40509510 | Msa0328300:intron | 35.0% | |
| TGCATCATTCAATCCAAAAC+AGG | - | chr2_4:40509567-40509586 | Msa0328300:intron | 35.0% | |
| ! | CACGCATATACATTGACTAA+AGG | + | chr2_4:40509646-40509665 | None:intergenic | 35.0% |
| TAGTCAATGTATATGCGTGT+AGG | - | chr2_4:40509647-40509666 | Msa0328300:intron | 35.0% | |
| GGTTATACTACTTTAGCTGT+AGG | - | chr2_4:40510422-40510441 | Msa0328300:intron | 35.0% | |
| TATACTACTTTAGCTGTAGG+TGG | - | chr2_4:40510425-40510444 | Msa0328300:intron | 35.0% | |
| !! | TAGGTGGTTGATGGATATTT+CGG | - | chr2_4:40510441-40510460 | Msa0328300:intron | 35.0% |
| ! | TGTTCTCGGTTCTTTTAATC+GGG | - | chr2_4:40510563-40510582 | Msa0328300:intron | 35.0% |
| TCTGATGAACTTAGCAAATG+CGG | + | chr2_4:40510614-40510633 | None:intergenic | 35.0% | |
| ! | TCATGTGATAATGCTATCCT+AGG | - | chr2_4:40510639-40510658 | Msa0328300:intron | 35.0% |
| AATTCGATTAACAGAAGCCT+AGG | + | chr2_4:40510659-40510678 | None:intergenic | 35.0% | |
| AGGCTTCTGTTAATCGAATT+TGG | - | chr2_4:40510659-40510678 | Msa0328300:intron | 35.0% | |
| TCTGTTAATCGAATTTGGCT+AGG | - | chr2_4:40510664-40510683 | Msa0328300:intron | 35.0% | |
| CTGTTAATCGAATTTGGCTA+GGG | - | chr2_4:40510665-40510684 | Msa0328300:intron | 35.0% | |
| ! | CAGCAATGTAAACTCTAAAG+GGG | + | chr2_4:40510736-40510755 | None:intergenic | 35.0% |
| TATGGTTTATCAAGTGCAGA+AGG | - | chr2_4:40510912-40510931 | Msa0328300:intron | 35.0% | |
| ATGGTTTATCAAGTGCAGAA+GGG | - | chr2_4:40510913-40510932 | Msa0328300:intron | 35.0% | |
| TTTGCTACATGTATCTACGA+AGG | - | chr2_4:40511116-40511135 | Msa0328300:intron | 35.0% | |
| CCATAAGCTGTAATGTCAAA+GGG | + | chr2_4:40511225-40511244 | None:intergenic | 35.0% | |
| ACCATAAGCTGTAATGTCAA+AGG | + | chr2_4:40511226-40511245 | None:intergenic | 35.0% | |
| ATGGTAAGCATTTCAGTGTT+TGG | - | chr2_4:40511241-40511260 | Msa0328300:intron | 35.0% | |
| ! | CCATAGTATTTCTGAATGCA+CGG | - | chr2_4:40511589-40511608 | Msa0328300:CDS | 35.0% |
| TGTTCAACTAAGTACAAGGC+AGG | - | chr2_4:40508524-40508543 | Msa0328300:intron | 40.0% | |
| TCCCAAGTATCACTAGAGTA+GGG | + | chr2_4:40508797-40508816 | None:intergenic | 40.0% | |
| TTCCCAAGTATCACTAGAGT+AGG | + | chr2_4:40508798-40508817 | None:intergenic | 40.0% | |
| ! | ATAAGCGTTCTTTTGTGCAC+TGG | - | chr2_4:40508858-40508877 | Msa0328300:intron | 40.0% |
| GAGGAGTTTAATCCCTACAT+TGG | - | chr2_4:40508999-40509018 | Msa0328300:intron | 40.0% | |
| TCCTCAGCATAACCAATGTA+GGG | + | chr2_4:40509014-40509033 | None:intergenic | 40.0% | |
| ATCCTCAGCATAACCAATGT+AGG | + | chr2_4:40509015-40509034 | None:intergenic | 40.0% | |
| !!! | GCTGCGTTTCTTTCCTTTTT+TGG | - | chr2_4:40509177-40509196 | Msa0328300:intron | 40.0% |
| GAGTTGCTCATCTATTTCGA+TGG | - | chr2_4:40509270-40509289 | Msa0328300:CDS | 40.0% | |
| CAGCAAACTCATGAGGTTAA+TGG | - | chr2_4:40509421-40509440 | Msa0328300:intron | 40.0% | |
| CAATGCAATCAACGAGTCAA+TGG | + | chr2_4:40509452-40509471 | None:intergenic | 40.0% | |
| ACGATGTTGATACTGACACA+TGG | - | chr2_4:40509799-40509818 | Msa0328300:intron | 40.0% | |
| ! | CGATACTGATAGTGACATGT+AGG | - | chr2_4:40509896-40509915 | Msa0328300:intron | 40.0% |
| !! | ATGAAGTGTCGGTGATATGT+AGG | - | chr2_4:40510112-40510131 | Msa0328300:intron | 40.0% |
| GGAGAAATCAATCCTTGCAA+GGG | + | chr2_4:40510467-40510486 | None:intergenic | 40.0% | |
| TGGAGAAATCAATCCTTGCA+AGG | + | chr2_4:40510468-40510487 | None:intergenic | 40.0% | |
| ACATCACAGCTACATAACAC+TGG | + | chr2_4:40510488-40510507 | None:intergenic | 40.0% | |
| !!! | GTTCTTCTTTTGCTGTTGAC+AGG | - | chr2_4:40510506-40510525 | Msa0328300:intron | 40.0% |
| TCGAATTTGGCTAGGGTAAT+TGG | - | chr2_4:40510672-40510691 | Msa0328300:intron | 40.0% | |
| TTCCTGAAAGAGTAAAGACG+CGG | + | chr2_4:40510879-40510898 | None:intergenic | 40.0% | |
| GGCATTAACTGATAGTACTC+TGG | - | chr2_4:40511033-40511052 | Msa0328300:intron | 40.0% | |
| CCCTTTGACATTACAGCTTA+TGG | - | chr2_4:40511222-40511241 | Msa0328300:intron | 40.0% | |
| CCGTGCATTCAGAAATACTA+TGG | + | chr2_4:40511592-40511611 | None:intergenic | 40.0% | |
| GTATACCTTGACGATGCAAT+AGG | - | chr2_4:40511722-40511741 | Msa0328300:CDS | 40.0% | |
| TAGTACCTATTGCATCGTCA+AGG | + | chr2_4:40511730-40511749 | None:intergenic | 40.0% | |
| CAACCTCTCTTATCAGCAAA+TGG | - | chr2_4:40511756-40511775 | Msa0328300:CDS | 40.0% | |
| ! | AAGCCATTTGCTGATAAGAG+AGG | + | chr2_4:40511762-40511781 | None:intergenic | 40.0% |
| ! | CTTTGTTTGCAAGAGTCCTT+CGG | - | chr2_4:40511944-40511963 | Msa0328300:CDS | 40.0% |
| AGTTCGTTCATATTTGCCGA+AGG | + | chr2_4:40511963-40511982 | None:intergenic | 40.0% | |
| GGAAAACACTTGAGCAACAC+TGG | + | chr2_4:40508633-40508652 | None:intergenic | 45.0% | |
| !! | GTGTTGCTCAAGTGTTTTCC+AGG | - | chr2_4:40508633-40508652 | Msa0328300:intron | 45.0% |
| GGAAGAAGGTGAGTTATCAC+AGG | - | chr2_4:40508724-40508743 | Msa0328300:intron | 45.0% | |
| GCCCTACTCTAGTGATACTT+GGG | - | chr2_4:40508793-40508812 | Msa0328300:intron | 45.0% | |
| AGTTGAAAGTGATGACTGCG+AGG | - | chr2_4:40508817-40508836 | Msa0328300:intron | 45.0% | |
| ATGGAAGAAGGAGGCTCTAT+AGG | - | chr2_4:40508896-40508915 | Msa0328300:intron | 45.0% | |
| AAGGAGGCTCTATAGGATCT+TGG | - | chr2_4:40508903-40508922 | Msa0328300:intron | 45.0% | |
| ! | GGATCTTGGTTATTTCGGGA+AGG | - | chr2_4:40508917-40508936 | Msa0328300:intron | 45.0% |
| TCCTCAACATCACCAGACTA+GGG | + | chr2_4:40508960-40508979 | None:intergenic | 45.0% | |
| ATCCTCAACATCACCAGACT+AGG | + | chr2_4:40508961-40508980 | None:intergenic | 45.0% | |
| ! | TCCCTACATTGGTTATGCTG+AGG | - | chr2_4:40509010-40509029 | Msa0328300:intron | 45.0% |
| AAGGAAAGAAACGCAGCACA+CGG | + | chr2_4:40509174-40509193 | None:intergenic | 45.0% | |
| GTGAACAGAATTGTGGGAGT+TGG | + | chr2_4:40509306-40509325 | None:intergenic | 45.0% | |
| ! | ATCGACTCAGCAAACTCATG+AGG | - | chr2_4:40509414-40509433 | Msa0328300:intron | 45.0% |
| ! | ATGTCTTCGGTGCAACTTTG+TGG | - | chr2_4:40509691-40509710 | Msa0328300:intron | 45.0% |
| ! | CTGATAGTGACATGTAGGCT+AGG | - | chr2_4:40509901-40509920 | Msa0328300:intron | 45.0% |
| AATGAAACCACGTGTACCAG+TGG | - | chr2_4:40510048-40510067 | Msa0328300:intron | 45.0% | |
| !! | TAGGTGTCTGTGTCGGTTAA+CGG | - | chr2_4:40510078-40510097 | Msa0328300:intron | 45.0% |
| ! | TACATGTATCGGCATCATGC+AGG | - | chr2_4:40510275-40510294 | Msa0328300:intron | 45.0% |
| GTATCACGGACACTTCATAC+TGG | + | chr2_4:40510333-40510352 | None:intergenic | 45.0% | |
| ! | ATGAAGTGTCCGTGATACAC+AGG | - | chr2_4:40510335-40510354 | Msa0328300:intron | 45.0% |
| CGCAACAAACCTGTGTATCA+CGG | + | chr2_4:40510347-40510366 | None:intergenic | 45.0% | |
| CTTTAGCTGTAGGTGGTTGA+TGG | - | chr2_4:40510432-40510451 | Msa0328300:intron | 45.0% | |
| ! | TCGGTTCTTTTAATCGGGTG+TGG | - | chr2_4:40510568-40510587 | Msa0328300:intron | 45.0% |
| ! | GGTGTGGATAGTTTTCTGCT+TGG | - | chr2_4:40510584-40510603 | Msa0328300:intron | 45.0% |
| TTCCGCGTCTTTACTCTTTC+AGG | - | chr2_4:40510874-40510893 | Msa0328300:intron | 45.0% | |
| GTCCATGAGCATTTGTTTCG+AGG | - | chr2_4:40511012-40511031 | Msa0328300:intron | 45.0% | |
| TGCCTCGAAACAAATGCTCA+TGG | + | chr2_4:40511017-40511036 | None:intergenic | 45.0% | |
| !! | TTTGAGTGAGGAGGTATCTC+AGG | - | chr2_4:40511813-40511832 | Msa0328300:CDS | 45.0% |
| CATCCTCCAACTGTTGTTCC+TGG | - | chr2_4:40508557-40508576 | Msa0328300:intron | 50.0% | |
| TCACCACCAGGAACAACAGT+TGG | + | chr2_4:40508566-40508585 | None:intergenic | 50.0% | |
| TGATCTTGCCAAGGTGCAGA+GGG | - | chr2_4:40508583-40508602 | Msa0328300:intron | 50.0% | |
| ! | TGTGCACTGGTATGTGTGTG+AGG | - | chr2_4:40508697-40508716 | Msa0328300:intron | 50.0% |
| ! | GTGCACTGGTATGTGTGTGA+GGG | - | chr2_4:40508698-40508717 | Msa0328300:intron | 50.0% |
| CTGGTATGTGTGTGAGGGTA+TGG | - | chr2_4:40508703-40508722 | Msa0328300:intron | 50.0% | |
| ! | GTGTGTGAGGGTATGGAAGA+AGG | - | chr2_4:40508710-40508729 | Msa0328300:intron | 50.0% |
| TGAGTTATCACAGGCTCGTG+AGG | - | chr2_4:40508733-40508752 | Msa0328300:intron | 50.0% | |
| CGCCCTACTCTAGTGATACT+TGG | - | chr2_4:40508792-40508811 | Msa0328300:intron | 50.0% | |
| ! | GAGGAATTTGCTCCCTAGTC+TGG | - | chr2_4:40508945-40508964 | Msa0328300:intron | 50.0% |
| ! | TCCCTAGTCTGGTGATGTTG+AGG | - | chr2_4:40508956-40508975 | Msa0328300:intron | 50.0% |
| TGCTGAGTCGATGACCAAAC+CGG | + | chr2_4:40509406-40509425 | None:intergenic | 50.0% | |
| TGTCGTGTAGGTGTCTGTGT+CGG | - | chr2_4:40510071-40510090 | Msa0328300:intron | 50.0% | |
| TGCATCTACGTGTCCGTATC+AGG | + | chr2_4:40510218-40510237 | None:intergenic | 50.0% | |
| TGGATATTTCGGCCCTTGCA+AGG | - | chr2_4:40510452-40510471 | Msa0328300:intron | 50.0% | |
| ATCAAGTGCAGAAGGGTTGC+AGG | - | chr2_4:40510920-40510939 | Msa0328300:intron | 50.0% | |
| CCACCAGGAACAACAGTTGG+AGG | + | chr2_4:40508563-40508582 | None:intergenic | 55.0% | |
| CCTCCAACTGTTGTTCCTGG+TGG | - | chr2_4:40508560-40508579 | Msa0328300:intron | 55.0% | |
| ! | TCCTGGTGGTGATCTTGCCA+AGG | - | chr2_4:40508574-40508593 | Msa0328300:intron | 55.0% |
| ACCTTGGCAAGATCACCACC+AGG | + | chr2_4:40508578-40508597 | None:intergenic | 55.0% | |
| GTGATCTTGCCAAGGTGCAG+AGG | - | chr2_4:40508582-40508601 | Msa0328300:intron | 55.0% | |
| ! | CCAGTGCACAAAAGCACGCT+TGG | + | chr2_4:40508687-40508706 | None:intergenic | 55.0% |
| ! | CCAAGCGTGCTTTTGTGCAC+TGG | - | chr2_4:40508684-40508703 | Msa0328300:intron | 55.0% |
| TGAGGATCTTGCTGCTCTCG+AGG | - | chr2_4:40508751-40508770 | Msa0328300:intron | 55.0% | |
| ! | TGCTCTCGAGGAGGAGTATG+AGG | - | chr2_4:40508763-40508782 | Msa0328300:intron | 55.0% |
| ! | TGTGCACTGGTATGTGACCG+AGG | - | chr2_4:40508871-40508890 | Msa0328300:intron | 55.0% |
| ! | GTGCACTGGTATGTGACCGA+GGG | - | chr2_4:40508872-40508891 | Msa0328300:intron | 55.0% |
| CTGGTATGTGACCGAGGGTA+TGG | - | chr2_4:40508877-40508896 | Msa0328300:intron | 55.0% | |
| ! | GTGACCGAGGGTATGGAAGA+AGG | - | chr2_4:40508884-40508903 | Msa0328300:intron | 55.0% |
| ! | ACCGAGGGTATGGAAGAAGG+AGG | - | chr2_4:40508887-40508906 | Msa0328300:intron | 55.0% |
| GCCTCCTTCTTCCATACCCT+CGG | + | chr2_4:40508891-40508910 | None:intergenic | 55.0% | |
| !! | GTGTACCAGTGGTGTCGTGT+AGG | - | chr2_4:40510059-40510078 | Msa0328300:intron | 55.0% |
| AGACACCTACACGACACCAC+TGG | + | chr2_4:40510067-40510086 | None:intergenic | 55.0% | |
| ATCGGCATCATGCAGGCGTT+TGG | - | chr2_4:40510282-40510301 | Msa0328300:intron | 55.0% | |
| !! | AGGCGTTTGGTTCTGCTGTC+TGG | - | chr2_4:40510295-40510314 | Msa0328300:intron | 55.0% |
| TCCTACAGCCCTCTGCACCT+TGG | + | chr2_4:40508594-40508613 | None:intergenic | 60.0% | |
| GGATCTTGCTGCTCTCGAGG+AGG | - | chr2_4:40508754-40508773 | Msa0328300:intron | 60.0% | |
| CACGACACCACTGGTACACG+TGG | + | chr2_4:40510058-40510077 | None:intergenic | 60.0% | |
| GCCAAGGTGCAGAGGGCTGT+AGG | - | chr2_4:40508590-40508609 | Msa0328300:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 40508437 | 40512003 | 40508437 | ID=Msa0328300;Name=Msa0328300 |
| chr2_4 | mRNA | 40508437 | 40512003 | 40508437 | ID=Msa0328300-mRNA-1;Parent=Msa0328300;Name=Msa0328300-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.75|0.33|0.75|4|0|242 |
| chr2_4 | exon | 40511561 | 40512003 | 40511561 | ID=Msa0328300-mRNA-1:exon:12434;Parent=Msa0328300-mRNA-1 |
| chr2_4 | exon | 40509499 | 40509544 | 40509499 | ID=Msa0328300-mRNA-1:exon:12433;Parent=Msa0328300-mRNA-1 |
| chr2_4 | exon | 40509183 | 40509356 | 40509183 | ID=Msa0328300-mRNA-1:exon:12432;Parent=Msa0328300-mRNA-1 |
| chr2_4 | exon | 40508437 | 40508499 | 40508437 | ID=Msa0328300-mRNA-1:exon:12431;Parent=Msa0328300-mRNA-1 |
| chr2_4 | CDS | 40511561 | 40512003 | 40511561 | ID=Msa0328300-mRNA-1:cds;Parent=Msa0328300-mRNA-1 |
| chr2_4 | CDS | 40509499 | 40509544 | 40509499 | ID=Msa0328300-mRNA-1:cds;Parent=Msa0328300-mRNA-1 |
| chr2_4 | CDS | 40509183 | 40509356 | 40509183 | ID=Msa0328300-mRNA-1:cds;Parent=Msa0328300-mRNA-1 |
| chr2_4 | CDS | 40508437 | 40508499 | 40508437 | ID=Msa0328300-mRNA-1:cds;Parent=Msa0328300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
