AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0328350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328350 MtrunA17_Chr2g0309561 91.781 511 38 3 1 510 1 508 0.0 917
Msa0328350 MtrunA17_Chr5g0442921 27.096 513 295 15 34 510 84 553 1.40e-36 142
Msa0328350 MtrunA17_Chr3g0130931 27.680 513 281 22 14 511 12 449 2.92e-36 140
Msa0328350 MtrunA17_Chr3g0095891 27.235 481 278 14 63 511 19 459 3.75e-34 134
Msa0328350 MtrunA17_Chr6g0484901 26.407 462 263 17 61 510 95 491 1.23e-33 133
Msa0328350 MtrunA17_Chr7g0275731 28.638 426 237 17 95 510 116 484 5.45e-32 128
Msa0328350 MtrunA17_Chr1g0210201 27.206 408 225 14 112 510 123 467 4.46e-31 125
Msa0328350 MtrunA17_Chr3g0099891 26.471 408 227 12 113 510 110 454 1.39e-30 124
Msa0328350 MtrunA17_Chr3g0099901 27.451 408 231 13 112 510 134 485 1.49e-29 121
Msa0328350 MtrunA17_Chr8g0352671 28.288 403 228 15 117 510 86 436 1.79e-29 120
Msa0328350 MtrunA17_Chr5g0395931 28.186 408 220 16 118 510 86 435 3.13e-27 114
Msa0328350 MtrunA17_Chr5g0435871 27.665 394 236 12 119 510 88 434 3.24e-27 114
Msa0328350 MtrunA17_Chr8g0352661 27.251 411 223 17 119 511 85 437 6.94e-27 113
Msa0328350 MtrunA17_Chr5g0415951 28.753 393 230 14 121 510 89 434 1.13e-26 112
Msa0328350 MtrunA17_Chr5g0435971 27.411 394 237 12 119 510 85 431 1.42e-26 112
Msa0328350 MtrunA17_Chr1g0212321 25.681 514 296 17 14 510 42 486 2.33e-26 112
Msa0328350 MtrunA17_Chr5g0395911 27.250 400 233 14 118 510 65 413 4.58e-25 107
Msa0328350 MtrunA17_Chr8g0386441 26.952 397 235 15 119 511 85 430 6.56e-25 107
Msa0328350 MtrunA17_Chr1g0165201 24.486 486 277 16 35 510 64 469 1.66e-24 106
Msa0328350 MtrunA17_Chr6g0457401 26.371 474 274 17 46 510 29 436 3.54e-24 105
Msa0328350 MtrunA17_Chr5g0419291 23.669 507 298 17 12 510 3 428 7.40e-24 103
Msa0328350 MtrunA17_Chr6g0486981 26.448 397 238 14 120 510 88 436 8.51e-24 103
Msa0328350 MtrunA17_Chr2g0310831 28.148 405 221 19 119 510 93 440 2.09e-23 102
Msa0328350 MtrunA17_Chr2g0320621 26.588 425 243 14 107 511 63 438 2.35e-23 103
Msa0328350 MtrunA17_Chr5g0434411 27.674 430 232 17 100 511 70 438 6.14e-23 101
Msa0328350 MtrunA17_Chr3g0087851 26.250 400 237 15 119 510 87 436 6.38e-22 98.2
Msa0328350 MtrunA17_Chr4g0027681 23.821 403 256 10 119 511 76 437 1.14e-21 98.2
Msa0328350 MtrunA17_Chr6g0487471 25.500 400 240 13 119 510 85 434 2.36e-21 96.7
Msa0328350 MtrunA17_Chr2g0333991 22.312 493 282 16 37 508 21 433 2.42e-21 96.7
Msa0328350 MtrunA17_Chr1g0189381 23.041 434 275 14 92 511 42 430 3.74e-21 96.3
Msa0328350 MtrunA17_Chr2g0310801 27.160 486 272 21 36 511 21 434 4.68e-21 95.9
Msa0328350 MtrunA17_Chr2g0291201 25.121 414 243 16 110 510 92 451 6.42e-21 95.5
Msa0328350 MtrunA17_Chr2g0310821 25.458 491 265 23 36 511 39 443 6.89e-21 95.1
Msa0328350 MtrunA17_Chr7g0267171 25.537 419 243 16 119 510 89 465 2.51e-20 94.0
Msa0328350 MtrunA17_Chr7g0265331 24.402 418 262 13 106 511 66 441 6.20e-19 89.7
Msa0328350 MtrunA17_Chr2g0308001 26.551 403 232 16 120 510 58 408 6.90e-19 89.4
Msa0328350 MtrunA17_Chr2g0311451 22.653 490 288 17 37 510 21 435 9.70e-19 88.6
Msa0328350 MtrunA17_Chr1g0179751 23.843 432 277 12 92 511 79 470 1.41e-18 88.6
Msa0328350 MtrunA17_Chr5g0401601 23.951 405 244 11 119 511 87 439 1.58e-18 89.0
Msa0328350 MtrunA17_Chr1g0164401 23.838 495 278 21 26 506 15 424 2.90e-18 87.0
Msa0328350 MtrunA17_Chr5g0395891 29.129 333 193 16 194 510 7 312 3.31e-18 85.5
Msa0328350 MtrunA17_Chr2g0307991 24.810 395 244 13 120 510 59 404 4.12e-18 86.7
Msa0328350 MtrunA17_Chr4g0001991 25.951 447 264 17 73 511 131 518 9.53e-18 86.3
Msa0328350 MtrunA17_Chr7g0221681 23.778 450 275 18 81 511 34 434 1.80e-17 85.1
Msa0328350 MtrunA17_Chr2g0312941 26.034 411 232 17 121 507 88 450 2.54e-17 84.3
Msa0328350 MtrunA17_Chr4g0053721 23.515 404 245 11 119 510 79 430 5.19e-17 84.3
Msa0328350 MtrunA17_Chr8g0352691 27.660 282 158 13 247 511 8 260 6.81e-17 80.9
Msa0328350 MtrunA17_Chr8g0353261 25.513 439 247 18 86 506 53 429 2.16e-16 81.6
Msa0328350 MtrunA17_Chr5g0419151 28.520 277 178 11 239 510 106 367 4.58e-16 79.7
Msa0328350 MtrunA17_Chr8g0390761 23.501 417 248 14 105 511 101 456 6.11e-15 77.0
Msa0328350 MtrunA17_Chr3g0112051 23.399 406 221 17 123 510 76 409 9.21e-14 73.2
Msa0328350 MtrunA17_Chr4g0023351 28.148 270 142 12 120 385 58 279 4.48e-13 70.1
Msa0328350 MtrunA17_Chr3g0133071 29.493 217 130 9 306 511 234 438 9.11e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0328350 AT3G12700.1 35.050 505 254 14 13 511 25 461 1.41e-95 298
Msa0328350 AT3G25700.1 31.090 431 238 15 96 510 62 449 3.53e-47 170
Msa0328350 AT3G18490.1 26.598 485 269 15 36 510 93 500 3.58e-38 146
Msa0328350 AT1G25510.1 27.459 488 288 17 31 510 54 483 4.59e-36 140
Msa0328350 AT1G01300.1 30.266 413 225 16 106 510 127 484 3.38e-35 138
Msa0328350 AT5G10770.1 25.572 481 291 14 38 511 54 474 3.99e-33 132
Msa0328350 AT3G59080.1 27.765 425 234 12 109 510 158 532 7.45e-31 126
Msa0328350 AT2G03200.1 27.536 414 218 18 119 510 105 458 9.83e-31 124
Msa0328350 AT2G42980.1 28.401 419 241 11 109 510 148 524 9.97e-31 125
Msa0328350 AT3G61820.1 27.972 429 244 16 94 510 108 483 2.38e-30 124
Msa0328350 AT1G64830.1 27.494 411 215 16 119 511 84 429 2.41e-29 120
Msa0328350 AT5G33340.1 28.465 404 220 15 119 510 88 434 2.02e-28 117
Msa0328350 AT5G10760.1 26.305 479 266 18 43 510 62 464 5.66e-27 114
Msa0328350 AT2G35615.1 26.357 516 292 18 11 511 2 444 2.85e-25 108
Msa0328350 AT1G09750.1 25.604 414 239 16 110 511 93 449 2.65e-23 102
Msa0328350 AT1G31450.1 27.674 430 248 13 95 511 63 442 4.18e-23 102
Msa0328350 AT1G08210.1 25.553 407 244 11 118 511 81 441 1.21e-22 101
Msa0328350 AT1G08210.3 25.553 407 244 11 118 511 129 489 1.27e-22 101
Msa0328350 AT1G08210.4 25.553 407 244 11 118 511 115 475 1.29e-22 101
Msa0328350 AT5G22850.1 24.505 404 255 10 118 511 78 441 2.63e-22 100
Msa0328350 AT3G20015.1 24.689 482 296 15 35 510 50 470 1.45e-21 97.8
Msa0328350 AT3G54400.1 26.265 415 226 17 110 510 76 424 7.06e-20 92.4
Msa0328350 AT3G59080.2 28.990 307 185 10 224 510 203 496 2.54e-19 91.3
Msa0328350 AT3G02740.1 24.939 413 239 16 117 511 81 440 8.02e-19 89.7
Msa0328350 AT1G08210.2 25.984 381 223 11 118 485 81 415 2.22e-18 88.6
Msa0328350 AT2G28220.1 24.688 401 223 15 121 511 67 398 1.49e-17 85.1
Msa0328350 AT3G02740.2 24.694 409 237 16 121 511 10 365 1.50e-17 85.1
Msa0328350 AT1G66180.1 25.641 429 235 18 103 511 63 427 3.01e-17 84.3
Msa0328350 AT2G36670.2 23.598 428 276 12 93 511 73 458 3.16e-17 84.7
Msa0328350 AT5G07030.1 24.096 415 240 16 110 511 103 455 3.60e-17 84.3
Msa0328350 AT3G25700.2 36.508 126 75 3 384 506 220 343 9.81e-17 82.0
Msa0328350 AT5G43100.1 23.472 409 233 14 119 511 74 418 1.36e-16 83.2
Msa0328350 AT4G30040.1 25.495 404 221 17 121 505 85 427 1.92e-16 82.0
Msa0328350 AT1G77480.1 25.721 416 240 16 112 511 58 420 1.99e-16 82.0
Msa0328350 AT1G77480.2 25.721 416 240 16 112 511 58 420 2.02e-16 82.0
Msa0328350 AT5G43100.2 23.472 409 233 14 119 511 74 418 2.32e-16 82.0
Msa0328350 AT2G36670.1 23.951 405 248 11 121 511 105 463 3.37e-16 81.6
Msa0328350 AT2G36670.4 23.951 405 248 11 121 511 34 392 8.45e-16 80.1
Msa0328350 AT2G36670.3 23.951 405 248 11 121 511 34 392 8.45e-16 80.1
Msa0328350 AT5G36260.1 22.816 412 256 12 114 511 71 434 1.05e-15 80.1
Msa0328350 AT2G23945.1 26.870 361 182 15 108 450 83 379 2.62e-15 78.6
Msa0328350 AT2G28010.1 24.566 403 217 17 121 511 65 392 3.37e-15 77.8
Msa0328350 AT1G05840.1 24.374 439 262 19 92 511 52 439 6.71e-15 77.4
Msa0328350 AT2G28030.1 24.304 395 228 12 121 511 61 388 3.00e-14 75.1
Msa0328350 AT5G02190.1 23.278 421 225 16 130 511 82 443 1.88e-13 72.8
Msa0328350 AT2G28040.2 24.060 399 225 16 120 511 55 382 3.15e-13 71.6
Msa0328350 AT1G79720.1 25.000 420 241 15 107 510 121 482 5.61e-13 71.6
Msa0328350 AT2G28040.1 24.060 399 225 16 120 511 64 391 6.72e-13 70.9
Msa0328350 AT5G45120.1 22.072 444 265 16 110 510 73 478 8.56e-12 67.8

Find 95 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCAAACCACCATTATT+TGG 0.151656 2_4:-40594490 None:intergenic
GAATGATTTGAATCAATAAA+AGG 0.191126 2_4:-40591353 None:intergenic
GGAACACGTAATTCTATTAT+TGG 0.204040 2_4:+40594661 Msa0328350:CDS
GAATTACGTGTTCCATTTAC+TGG 0.216571 2_4:-40594652 None:intergenic
GACAATGCTGGTCTAAAATT+TGG 0.217971 2_4:+40594136 Msa0328350:CDS
CCTAGGTTAGTGTTTCATTT+TGG 0.230464 2_4:+40594550 Msa0328350:CDS
GATCAAGTTGAAGCTATAAA+AGG 0.233864 2_4:+40591483 Msa0328350:CDS
TTATGCAGCAAAATCATCTT+TGG 0.272951 2_4:+40594689 Msa0328350:CDS
TCACTCAACAATTTGACTTT+TGG 0.277317 2_4:-40594235 None:intergenic
TCATCTGCTGTGGGATTCTA+TGG 0.294165 2_4:+40593956 Msa0328350:CDS
TCAGGAAGAGATGTTGAAAT+TGG 0.314062 2_4:+40591636 Msa0328350:CDS
GTAACATTCACACCATAAAA+TGG 0.329917 2_4:-40594289 None:intergenic
GTTTCAAGCTACCTAACATT+TGG 0.330880 2_4:+40594205 Msa0328350:CDS
GAACACCAGGACAAAAGTTT+TGG 0.330929 2_4:+40591685 Msa0328350:CDS
TCAAAAGGGATATATTTAGA+AGG 0.341495 2_4:+40591511 Msa0328350:CDS
GAAAATCCCACCAAAGGTTT+GGG 0.350338 2_4:+40594339 Msa0328350:CDS
ACGATTAATGATCCAAATAA+TGG 0.354193 2_4:+40594478 Msa0328350:CDS
TGCCTCTACAACAGGATAAT+AGG 0.358648 2_4:-40594428 None:intergenic
TCATGAAGAGCATGAGAATA+TGG 0.359184 2_4:+40591404 Msa0328350:CDS
AGGCATGATTCAAGATTTCT+TGG 0.371809 2_4:+40591453 Msa0328350:CDS
TGAAAATCCCACCAAAGGTT+TGG 0.372838 2_4:+40594338 Msa0328350:CDS
TGACAATCAGTCAAACTATA+AGG 0.373919 2_4:-40591957 None:intergenic
ATCCATGCCTTTATGAAGTC+AGG 0.375990 2_4:+40591991 Msa0328350:CDS
CTCTGATGTTAATGATTCAA+TGG 0.376518 2_4:+40594939 Msa0328350:three_prime_UTR
AAGCTTCAAAATCAAACAAT+TGG 0.385729 2_4:+40594022 Msa0328350:CDS
TGATCCAAATAATGGTGGTT+TGG 0.393986 2_4:+40594486 Msa0328350:CDS
CAAATGGTCAACAAGACAAT+AGG 0.406150 2_4:-40594170 None:intergenic
TTCAAGAACAAGTGCAGTTA+AGG 0.408146 2_4:-40594404 None:intergenic
TTGGAGTTGTTCCAAATGTT+AGG 0.416424 2_4:-40594216 None:intergenic
TATGCAGCAAAATCATCTTT+GGG 0.427055 2_4:+40594690 Msa0328350:CDS
TTGGTTTAAATGTATGAGAA+AGG 0.428615 2_4:+40591737 Msa0328350:CDS
GTAATGAAATTGTGAATAAG+AGG 0.431201 2_4:-40591180 None:intergenic
GGCATGATTCAAGATTTCTT+GGG 0.435229 2_4:+40591454 Msa0328350:CDS
CATAAACATAATAAACATAA+AGG 0.437149 2_4:+40591783 Msa0328350:CDS
GCTTCAAAATCCCAAACCTT+TGG 0.441065 2_4:-40594349 None:intergenic
CTATAAAAGGGTTCGTCAAA+AGG 0.442221 2_4:+40591496 Msa0328350:CDS
AAACAAACCTGACTTCATAA+AGG 0.442694 2_4:-40591998 None:intergenic
CATTCATTTGTTGACAATGC+TGG 0.443741 2_4:+40594124 Msa0328350:CDS
ATATTTGTACTTGTGATTCA+AGG 0.448474 2_4:-40591206 None:intergenic
GTTGGTGGAATATTAGCCTT+AGG 0.448786 2_4:+40594091 Msa0328350:CDS
TATTATGTTTATGTTTATGT+TGG 0.454187 2_4:-40591773 None:intergenic
ATACAGGAAGTGAGTTAACT+TGG 0.474918 2_4:+40591718 Msa0328350:CDS
GAAATCTTGAATCATGCCTA+TGG 0.478263 2_4:-40591449 None:intergenic
TCAAAATCCCAAACCTTTGG+TGG 0.478987 2_4:-40594346 None:intergenic
GAAATGATGGATCAAAGAAT+AGG 0.483791 2_4:+40591534 Msa0328350:CDS
AATGATTTGAATCAATAAAA+GGG 0.488996 2_4:-40591352 None:intergenic
ATGTTAATGATTCAATGGTA+TGG 0.492588 2_4:+40594944 Msa0328350:three_prime_UTR
CTCATACAGCAAGAAGAAGA+AGG 0.494652 2_4:+40591835 Msa0328350:CDS
TATATTTAGAAGGGAAATGA+TGG 0.495318 2_4:+40591521 Msa0328350:CDS
ATCAAGTTGAAGCTATAAAA+GGG 0.495500 2_4:+40591484 Msa0328350:CDS
TATAAAAGGGTTCGTCAAAA+GGG 0.504396 2_4:+40591497 Msa0328350:CDS
AATAGTGAGAGAGAAGAAAG+AGG 0.509311 2_4:-40591150 None:intergenic
ATGAATTATCAAGGTGGTCA+TGG 0.510467 2_4:+40591558 Msa0328350:CDS
TTGATCGTCGACGGAGATGC+CGG 0.510880 2_4:-40594311 None:intergenic
ATCTTTGACAGCTATGGTAG+TGG 0.513051 2_4:+40593929 Msa0328350:intron
CAAAATCCCAAACCTTTGGT+GGG 0.519085 2_4:-40594345 None:intergenic
TGAAGAGGAAATTGATGCAA+TGG 0.528126 2_4:+40591310 Msa0328350:CDS
AGAATAGGAATGAATTATCA+AGG 0.529627 2_4:+40591549 Msa0328350:CDS
TTCCCATATGAAAATGTTGG+TGG 0.533682 2_4:+40594076 Msa0328350:CDS
CAGCATTGTCAACAAATGAA+TGG 0.541187 2_4:-40594123 None:intergenic
ACTCTCTAGTTGCATGGAGA+AGG 0.546138 2_4:-40594748 None:intergenic
TGAATGGTGTCTAAAGCCTA+AGG 0.550436 2_4:-40594107 None:intergenic
TCATAAAGGCATGGATCAGA+AGG 0.555785 2_4:-40591984 None:intergenic
TCAATGATGTAACTCTTCAC+TGG 0.557173 2_4:-40594595 None:intergenic
GAAGTTTGCTTTGATGCAGA+AGG 0.557366 2_4:+40594508 Msa0328350:CDS
CAAAAGGGATATATTTAGAA+GGG 0.558091 2_4:+40591512 Msa0328350:CDS
TATTTGTACTTGTGATTCAA+GGG 0.559719 2_4:-40591205 None:intergenic
GGTTTCCCATATGAAAATGT+TGG 0.562696 2_4:+40594073 Msa0328350:CDS
AGAACAACTCTCTAGTTGCA+TGG 0.577195 2_4:-40594754 None:intergenic
GCATGATTCAAGATTTCTTG+GGG 0.578453 2_4:+40591455 Msa0328350:CDS
TATCTAATATGCAAATGAAG+AGG 0.579339 2_4:+40591295 Msa0328350:exon
AAACATAATAAACATAAAGG+AGG 0.582793 2_4:+40591786 Msa0328350:CDS
GGTGTTACAGTTGGAACACC+AGG 0.586302 2_4:+40591672 Msa0328350:CDS
TCATACAGCAAGAAGAAGAA+GGG 0.591156 2_4:+40591836 Msa0328350:CDS
AGCCTATTATCCTGTTGTAG+AGG 0.592083 2_4:+40594426 Msa0328350:CDS
TAATGAAATTGTGAATAAGA+GGG 0.593140 2_4:-40591179 None:intergenic
TTTCAGCATTTGATCGTCGA+CGG 0.594223 2_4:-40594320 None:intergenic
GAAGGGATGATCATTGACTC+AGG 0.595985 2_4:+40594376 Msa0328350:CDS
AACCTGACTTCATAAAGGCA+TGG 0.599467 2_4:-40591993 None:intergenic
CCAAAATGAAACACTAACCT+AGG 0.600070 2_4:-40594550 None:intergenic
ATTAATGATCCAAATAATGG+TGG 0.600681 2_4:+40594481 Msa0328350:CDS
TGTTAATGATTCAATGGTAT+GGG 0.605609 2_4:+40594945 Msa0328350:three_prime_UTR
AACATAATAAACATAAAGGA+GGG 0.609603 2_4:+40591787 Msa0328350:CDS
AATGCTGAAAATCCCACCAA+AGG 0.615934 2_4:+40594333 Msa0328350:CDS
CAATCAGTGATAAATAGTCC+AGG 0.618605 2_4:+40594052 Msa0328350:CDS
TGAGTCTAGAACTTATCCAT+AGG 0.624401 2_4:+40591433 Msa0328350:CDS
TTACTATTTGAGGTGTGTCG+AGG 0.632858 2_4:-40591100 None:intergenic
TTGATGAGAGTATTGCACCT+AGG 0.634165 2_4:+40594533 Msa0328350:CDS
TAGTGGAATATCATCTGCTG+TGG 0.650542 2_4:+40593946 Msa0328350:CDS
AGTGGAATATCATCTGCTGT+GGG 0.677617 2_4:+40593947 Msa0328350:CDS
ATGATGTAACTCTTCACTGG+TGG 0.683679 2_4:-40594592 None:intergenic
GGACAAAACATATCATCACA+AGG 0.713390 2_4:-40591873 None:intergenic
TGAAATGTATGAGAACGATG+TGG 0.744665 2_4:-40591894 None:intergenic
ATAGGAATGAATTATCAAGG+TGG 0.746997 2_4:+40591552 Msa0328350:CDS
TGTTCATAGCATCAACAACG+AGG 0.756855 2_4:+40591377 Msa0328350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTATTTATTTTT+TGG - chr2_4:40593088-40593107 None:intergenic 0.0%
!!! TTTTTTTTTGAAACAATTAA+AGG + chr2_4:40592548-40592567 Msa0328350:intron 10.0%
!! AAAAAGTAATAAATAGTTAA+AGG + chr2_4:40592664-40592683 Msa0328350:intron 10.0%
!!! AAATTTCTCATATTTATTTT+AGG + chr2_4:40593845-40593864 Msa0328350:intron 10.0%
!! AATGATTTGAATCAATAAAA+GGG - chr2_4:40591355-40591374 None:intergenic 15.0%
!! TATTATGTTTATGTTTATGT+TGG - chr2_4:40591776-40591795 None:intergenic 15.0%
!! CATAAACATAATAAACATAA+AGG + chr2_4:40591783-40591802 Msa0328350:CDS 15.0%
!! AAATAAAACATGAAAAAAGA+GGG - chr2_4:40592032-40592051 None:intergenic 15.0%
!! AAAATAAAACATGAAAAAAG+AGG - chr2_4:40592033-40592052 None:intergenic 15.0%
!!! TTAATTTTGTTTTGTTTTGA+TGG + chr2_4:40592089-40592108 Msa0328350:intron 15.0%
!!! ATCAAAATGGTAATTTATTT+TGG - chr2_4:40592279-40592298 None:intergenic 15.0%
!! TTAAATATATTGAATTGAGA+TGG - chr2_4:40592368-40592387 None:intergenic 15.0%
!! ATCTCAATTCAATATATTTA+AGG + chr2_4:40592367-40592386 Msa0328350:intron 15.0%
!! TCTCAATTCAATATATTTAA+GGG + chr2_4:40592368-40592387 Msa0328350:intron 15.0%
!! AGAGATATATTAATATGTAT+TGG - chr2_4:40592401-40592420 None:intergenic 15.0%
!!! GTCAAATGTTTTTTATAAAT+AGG - chr2_4:40592789-40592808 None:intergenic 15.0%
!!! TTAATCTCTAAAAAACTAAA+TGG + chr2_4:40593369-40593388 Msa0328350:intron 15.0%
!! TTATAAATGAGAATTAATGT+TGG + chr2_4:40593572-40593591 Msa0328350:intron 15.0%
!!! CTTTTCAATTTAAATTTGAA+AGG - chr2_4:40593733-40593752 None:intergenic 15.0%
!! AAATTTAAAGACATGTATTA+AGG - chr2_4:40593831-40593850 None:intergenic 15.0%
!! GATATTTATAAAAACACTAT+TGG + chr2_4:40594718-40594737 Msa0328350:CDS 15.0%
!! TAATGAAATTGTGAATAAGA+GGG - chr2_4:40591182-40591201 None:intergenic 20.0%
!! GAATGATTTGAATCAATAAA+AGG - chr2_4:40591356-40591375 None:intergenic 20.0%
!! AAACATAATAAACATAAAGG+AGG + chr2_4:40591786-40591805 Msa0328350:CDS 20.0%
!! AACATAATAAACATAAAGGA+GGG + chr2_4:40591787-40591806 Msa0328350:CDS 20.0%
!!! CAAAAAATTAGAAGGTTTTT+AGG + chr2_4:40592161-40592180 Msa0328350:intron 20.0%
!! TATTGTCTTGAAAATCAAAA+TGG - chr2_4:40592292-40592311 None:intergenic 20.0%
!! TATATTTAACTATGCTTCTA+TGG + chr2_4:40592420-40592439 Msa0328350:intron 20.0%
!!! TTTTACTTTTTGCTTTTTCA+TGG + chr2_4:40592453-40592472 Msa0328350:intron 20.0%
!!! ATGTTTTTTATAAATAGGAC+TGG - chr2_4:40592784-40592803 None:intergenic 20.0%
!!! TCTTAAGTGAACATTAATTT+TGG - chr2_4:40593198-40593217 None:intergenic 20.0%
!! AATCAATGTGTTTGATTATA+TGG + chr2_4:40593303-40593322 Msa0328350:intron 20.0%
!! AATATAAGTCAATATATGTG+AGG - chr2_4:40593406-40593425 None:intergenic 20.0%
!! TAATTCTCATTTATAACCAA+TGG - chr2_4:40593568-40593587 None:intergenic 20.0%
!! ATTTAAATTTGAAAGGAGTA+AGG - chr2_4:40593726-40593745 None:intergenic 20.0%
!! CAAAAGTTTGATAAATGAAT+TGG + chr2_4:40593771-40593790 Msa0328350:intron 20.0%
!!! AATGTTTTTTCTTATTCTCA+TGG + chr2_4:40594784-40594803 Msa0328350:three_prime_UTR 20.0%
!!! TTTTGTGTATTTGATTGAAT+TGG + chr2_4:40594819-40594838 Msa0328350:three_prime_UTR 20.0%
!!! ATAACCATTTTTTCATTGTA+TGG - chr2_4:40594984-40595003 None:intergenic 20.0%
!! ACAATGAAAAAATGGTTATT+TGG + chr2_4:40594985-40595004 Msa0328350:three_prime_UTR 20.0%
!! CAATGAAAAAATGGTTATTT+GGG + chr2_4:40594986-40595005 Msa0328350:three_prime_UTR 20.0%
!! AGATTGTGTTTTACTATTTG+AGG - chr2_4:40591113-40591132 None:intergenic 25.0%
! GTAATGAAATTGTGAATAAG+AGG - chr2_4:40591183-40591202 None:intergenic 25.0%
! TATTTGTACTTGTGATTCAA+GGG - chr2_4:40591208-40591227 None:intergenic 25.0%
! ATATTTGTACTTGTGATTCA+AGG - chr2_4:40591209-40591228 None:intergenic 25.0%
! TATCTAATATGCAAATGAAG+AGG + chr2_4:40591295-40591314 Msa0328350:exon 25.0%
!!! ATCAAGTTGAAGCTATAAAA+GGG + chr2_4:40591484-40591503 Msa0328350:CDS 25.0%
! TCAAAAGGGATATATTTAGA+AGG + chr2_4:40591511-40591530 Msa0328350:CDS 25.0%
! CAAAAGGGATATATTTAGAA+GGG + chr2_4:40591512-40591531 Msa0328350:CDS 25.0%
! TATATTTAGAAGGGAAATGA+TGG + chr2_4:40591521-40591540 Msa0328350:CDS 25.0%
! AGAATAGGAATGAATTATCA+AGG + chr2_4:40591549-40591568 Msa0328350:CDS 25.0%
!! TTTGAATTTTCAATGCATTC+AGG + chr2_4:40591618-40591637 Msa0328350:CDS 25.0%
!! GAAATTGGTGAATATTTTGT+TGG + chr2_4:40591651-40591670 Msa0328350:CDS 25.0%
! TTGGTTTAAATGTATGAGAA+AGG + chr2_4:40591737-40591756 Msa0328350:CDS 25.0%
!!! TTTGCTAGAAAATTGTTTTG+TGG + chr2_4:40592052-40592071 Msa0328350:intron 25.0%
!!! TTGCTAGAAAATTGTTTTGT+GGG + chr2_4:40592053-40592072 Msa0328350:intron 25.0%
!! TTTTGTTGCAAGTAGATTAT+AGG + chr2_4:40592124-40592143 Msa0328350:intron 25.0%
!! AGTAGATTATAGGATTGTTT+TGG + chr2_4:40592134-40592153 Msa0328350:intron 25.0%
! TTGGAGAACAAAAAATTAGA+AGG + chr2_4:40592153-40592172 Msa0328350:intron 25.0%
! GAGAAAAGATGAGAAATTAA+AGG + chr2_4:40592513-40592532 Msa0328350:intron 25.0%
!! ACAATTAAAGGCTATCTTTT+TGG + chr2_4:40592560-40592579 Msa0328350:intron 25.0%
! AAAAAGAGAAGGTAAATTTG+AGG - chr2_4:40592587-40592606 None:intergenic 25.0%
!! AAATTTACCTTCTCTTTTTG+TGG + chr2_4:40592588-40592607 Msa0328350:intron 25.0%
!! AATTTACCTTCTCTTTTTGT+GGG + chr2_4:40592589-40592608 Msa0328350:intron 25.0%
!! TTTTTATAAATAGGACTGGA+GGG - chr2_4:40592780-40592799 None:intergenic 25.0%
!!! TTTTTTATAAATAGGACTGG+AGG - chr2_4:40592781-40592800 None:intergenic 25.0%
! CAATGCATAAATGATGAATT+TGG + chr2_4:40592819-40592838 Msa0328350:intron 25.0%
! ATTGTAACACATAGTCAAAA+CGG - chr2_4:40593049-40593068 None:intergenic 25.0%
! CCAATTGAAATTGAAATCTT+TGG - chr2_4:40593147-40593166 None:intergenic 25.0%
! CCAAAGATTTCAATTTCAAT+TGG + chr2_4:40593144-40593163 Msa0328350:intron 25.0%
! AGATTTCAATTTCAATTGGT+TGG + chr2_4:40593148-40593167 Msa0328350:intron 25.0%
!!! AATTGGTTGGTTTGTTTATA+AGG + chr2_4:40593161-40593180 Msa0328350:intron 25.0%
!! CAAACACATTGATTATTGAT+GGG - chr2_4:40593297-40593316 None:intergenic 25.0%
!! TCAAACACATTGATTATTGA+TGG - chr2_4:40593298-40593317 None:intergenic 25.0%
! CAAAATTCGCTATATTTACA+AGG - chr2_4:40593346-40593365 None:intergenic 25.0%
!! TCTCTAAAAAACTAAATGGA+AGG + chr2_4:40593373-40593392 Msa0328350:intron 25.0%
!!! TATGAGGAGTACTTTTTTAA+AGG - chr2_4:40593492-40593511 None:intergenic 25.0%
! AAATGAGAATTAATGTTGGT+AGG + chr2_4:40593576-40593595 Msa0328350:intron 25.0%
! AACCTAAGCAATAAAAAGAT+AGG + chr2_4:40593998-40594017 Msa0328350:CDS 25.0%
!! TTCCTATCTTTTTATTGCTT+AGG - chr2_4:40594003-40594022 None:intergenic 25.0%
! AAGCTTCAAAATCAAACAAT+TGG + chr2_4:40594022-40594041 Msa0328350:CDS 25.0%
! ACGATTAATGATCCAAATAA+TGG + chr2_4:40594478-40594497 Msa0328350:CDS 25.0%
! ATTAATGATCCAAATAATGG+TGG + chr2_4:40594481-40594500 Msa0328350:CDS 25.0%
! ATGTTAATGATTCAATGGTA+TGG + chr2_4:40594944-40594963 Msa0328350:three_prime_UTR 25.0%
! TGTTAATGATTCAATGGTAT+GGG + chr2_4:40594945-40594964 Msa0328350:three_prime_UTR 25.0%
!! GATCAAGTTGAAGCTATAAA+AGG + chr2_4:40591483-40591502 Msa0328350:CDS 30.0%
TATAAAAGGGTTCGTCAAAA+GGG + chr2_4:40591497-40591516 Msa0328350:CDS 30.0%
!! GAAATGATGGATCAAAGAAT+AGG + chr2_4:40591534-40591553 Msa0328350:CDS 30.0%
ATAGGAATGAATTATCAAGG+TGG + chr2_4:40591552-40591571 Msa0328350:CDS 30.0%
!!! TATTTTGTTGGTGTTACAGT+TGG + chr2_4:40591663-40591682 Msa0328350:CDS 30.0%
TGACAATCAGTCAAACTATA+AGG - chr2_4:40591960-40591979 None:intergenic 30.0%
AAACAAACCTGACTTCATAA+AGG - chr2_4:40592001-40592020 None:intergenic 30.0%
!! TGCTAGAAAATTGTTTTGTG+GGG + chr2_4:40592054-40592073 Msa0328350:intron 30.0%
! ACAAGTGTTGCTAAATGAAT+AGG + chr2_4:40592478-40592497 Msa0328350:intron 30.0%
! CAAGTGTTGCTAAATGAATA+GGG + chr2_4:40592479-40592498 Msa0328350:intron 30.0%
AGATCACAAATTAAGACAGT+TGG + chr2_4:40592618-40592637 Msa0328350:intron 30.0%
GATCACAAATTAAGACAGTT+GGG + chr2_4:40592619-40592638 Msa0328350:intron 30.0%
ATCACAAATTAAGACAGTTG+GGG + chr2_4:40592620-40592639 Msa0328350:intron 30.0%
! GTCTCACATTTTACTCATTT+CGG - chr2_4:40592915-40592934 None:intergenic 30.0%
TAAAAACCAGCCAAAATACT+CGG + chr2_4:40592967-40592986 Msa0328350:intron 30.0%
AAATCTTTGGATATGTCTTG+TGG - chr2_4:40593134-40593153 None:intergenic 30.0%
TATCAGAACTCTAAATACGT+TGG - chr2_4:40593244-40593263 None:intergenic 30.0%
! AACGTATTTAGAGTTCTGAT+AGG + chr2_4:40593243-40593262 Msa0328350:intron 30.0%
TCTCATTTATAACCAATGGT+TGG - chr2_4:40593564-40593583 None:intergenic 30.0%
GAACATTAATCATAGAGTAC+TGG - chr2_4:40593880-40593899 None:intergenic 30.0%
AATCTTATCTTTGACAGCTA+TGG + chr2_4:40593923-40593942 Msa0328350:intron 30.0%
! TTCCACCAACATTTTCATAT+GGG - chr2_4:40594081-40594100 None:intergenic 30.0%
! ATTCCACCAACATTTTCATA+TGG - chr2_4:40594082-40594101 None:intergenic 30.0%
! AAACATTTTTGTGGCTCAAA+TGG - chr2_4:40594189-40594208 None:intergenic 30.0%
!! TCACTCAACAATTTGACTTT+TGG - chr2_4:40594238-40594257 None:intergenic 30.0%
! CTTCTCTATCAACCATTTTA+TGG + chr2_4:40594277-40594296 Msa0328350:CDS 30.0%
GTAACATTCACACCATAAAA+TGG - chr2_4:40594292-40594311 None:intergenic 30.0%
! TTTTATGGTGTGAATGTTAC+CGG + chr2_4:40594292-40594311 Msa0328350:CDS 30.0%
!!! AATCCAAGACACTTTGTTTT+TGG - chr2_4:40594628-40594647 None:intergenic 30.0%
GGAACACGTAATTCTATTAT+TGG + chr2_4:40594661-40594680 Msa0328350:CDS 30.0%
TTATGCAGCAAAATCATCTT+TGG + chr2_4:40594689-40594708 Msa0328350:CDS 30.0%
TATGCAGCAAAATCATCTTT+GGG + chr2_4:40594690-40594709 Msa0328350:CDS 30.0%
CTCTGATGTTAATGATTCAA+TGG + chr2_4:40594939-40594958 Msa0328350:three_prime_UTR 30.0%
GCATCCATACAATGAAAAAA+TGG + chr2_4:40594977-40594996 Msa0328350:three_prime_UTR 30.0%
AATAGTGAGAGAGAAGAAAG+AGG - chr2_4:40591153-40591172 None:intergenic 35.0%
TGAAGAGGAAATTGATGCAA+TGG + chr2_4:40591310-40591329 Msa0328350:CDS 35.0%
! TCATGAAGAGCATGAGAATA+TGG + chr2_4:40591404-40591423 Msa0328350:CDS 35.0%
! TGAGTCTAGAACTTATCCAT+AGG + chr2_4:40591433-40591452 Msa0328350:CDS 35.0%
GAAATCTTGAATCATGCCTA+TGG - chr2_4:40591452-40591471 None:intergenic 35.0%
AGGCATGATTCAAGATTTCT+TGG + chr2_4:40591453-40591472 Msa0328350:CDS 35.0%
GGCATGATTCAAGATTTCTT+GGG + chr2_4:40591454-40591473 Msa0328350:CDS 35.0%
GCATGATTCAAGATTTCTTG+GGG + chr2_4:40591455-40591474 Msa0328350:CDS 35.0%
CTATAAAAGGGTTCGTCAAA+AGG + chr2_4:40591496-40591515 Msa0328350:CDS 35.0%
ATGAATTATCAAGGTGGTCA+TGG + chr2_4:40591558-40591577 Msa0328350:CDS 35.0%
TCAGGAAGAGATGTTGAAAT+TGG + chr2_4:40591636-40591655 Msa0328350:CDS 35.0%
! ATAAGCCAAAACTTTTGTCC+TGG - chr2_4:40591693-40591712 None:intergenic 35.0%
!!! TTTTGGCTTATTGCTGATAC+AGG + chr2_4:40591702-40591721 Msa0328350:CDS 35.0%
ATACAGGAAGTGAGTTAACT+TGG + chr2_4:40591718-40591737 Msa0328350:CDS 35.0%
TCATACAGCAAGAAGAAGAA+GGG + chr2_4:40591836-40591855 Msa0328350:CDS 35.0%
GGACAAAACATATCATCACA+AGG - chr2_4:40591876-40591895 None:intergenic 35.0%
TGAAATGTATGAGAACGATG+TGG - chr2_4:40591897-40591916 None:intergenic 35.0%
!! AAAATTGTTTTGTGGGGTGT+TGG + chr2_4:40592060-40592079 Msa0328350:intron 35.0%
! TGTTTTACAAATGTGTCACG+TGG - chr2_4:40592250-40592269 None:intergenic 35.0%
ATGAGTAAAATGTGAGACAG+AGG + chr2_4:40592917-40592936 Msa0328350:intron 35.0%
ACAGAGGAAGTTATTAGTAG+TGG + chr2_4:40592933-40592952 Msa0328350:intron 35.0%
! TAGAGTTCTGATAGGAGTAA+TGG + chr2_4:40593251-40593270 Msa0328350:intron 35.0%
! TGTGGTAATGTATGTGTATG+AGG - chr2_4:40593508-40593527 None:intergenic 35.0%
TGCCTTGAATGAAGAAATGT+GGG - chr2_4:40593615-40593634 None:intergenic 35.0%
ATGCCTTGAATGAAGAAATG+TGG - chr2_4:40593616-40593635 None:intergenic 35.0%
CACAGATTTAACAAAGAGAC+TGG - chr2_4:40593648-40593667 None:intergenic 35.0%
TATAGTTGTCAACGTGAACA+GGG - chr2_4:40593694-40593713 None:intergenic 35.0%
ATATAGTTGTCAACGTGAAC+AGG - chr2_4:40593695-40593714 None:intergenic 35.0%
CAATCAGTGATAAATAGTCC+AGG + chr2_4:40594052-40594071 Msa0328350:CDS 35.0%
! ACATTTTCATATGGGAAACC+TGG - chr2_4:40594073-40594092 None:intergenic 35.0%
GGTTTCCCATATGAAAATGT+TGG + chr2_4:40594073-40594092 Msa0328350:CDS 35.0%
TTCCCATATGAAAATGTTGG+TGG + chr2_4:40594076-40594095 Msa0328350:CDS 35.0%
CAGCATTGTCAACAAATGAA+TGG - chr2_4:40594126-40594145 None:intergenic 35.0%
! CATTCATTTGTTGACAATGC+TGG + chr2_4:40594124-40594143 Msa0328350:CDS 35.0%
! GACAATGCTGGTCTAAAATT+TGG + chr2_4:40594136-40594155 Msa0328350:CDS 35.0%
CAAATGGTCAACAAGACAAT+AGG - chr2_4:40594173-40594192 None:intergenic 35.0%
! GGTAGCTTGAAACATTTTTG+TGG - chr2_4:40594198-40594217 None:intergenic 35.0%
GTTTCAAGCTACCTAACATT+TGG + chr2_4:40594205-40594224 Msa0328350:CDS 35.0%
TTGGAGTTGTTCCAAATGTT+AGG - chr2_4:40594219-40594238 None:intergenic 35.0%
TTCAAGAACAAGTGCAGTTA+AGG - chr2_4:40594407-40594426 None:intergenic 35.0%
!! TTTTTCAATGCCTCTACAAC+AGG - chr2_4:40594439-40594458 None:intergenic 35.0%
TGATCCAAATAATGGTGGTT+TGG + chr2_4:40594486-40594505 Msa0328350:CDS 35.0%
ACTTCCAAACCACCATTATT+TGG - chr2_4:40594493-40594512 None:intergenic 35.0%
CCAAAATGAAACACTAACCT+AGG - chr2_4:40594553-40594572 None:intergenic 35.0%
! CCTAGGTTAGTGTTTCATTT+TGG + chr2_4:40594550-40594569 Msa0328350:CDS 35.0%
! AGGTTAGTGTTTCATTTTGG+TGG + chr2_4:40594553-40594572 Msa0328350:CDS 35.0%
!! TTAGTGTTTCATTTTGGTGG+AGG + chr2_4:40594556-40594575 Msa0328350:CDS 35.0%
!! TTCATTTTGGTGGAGGAATA+AGG + chr2_4:40594563-40594582 Msa0328350:CDS 35.0%
TCAATGATGTAACTCTTCAC+TGG - chr2_4:40594598-40594617 None:intergenic 35.0%
! CTTGGATTTTTGCCAGTAAA+TGG + chr2_4:40594640-40594659 Msa0328350:CDS 35.0%
GAATTACGTGTTCCATTTAC+TGG - chr2_4:40594655-40594674 None:intergenic 35.0%
! TTACTATTTGAGGTGTGTCG+AGG - chr2_4:40591103-40591122 None:intergenic 40.0%
TGTTCATAGCATCAACAACG+AGG + chr2_4:40591377-40591396 Msa0328350:CDS 40.0%
! GAACACCAGGACAAAAGTTT+TGG + chr2_4:40591685-40591704 Msa0328350:CDS 40.0%
CTCATACAGCAAGAAGAAGA+AGG + chr2_4:40591835-40591854 Msa0328350:CDS 40.0%
! TCATAAAGGCATGGATCAGA+AGG - chr2_4:40591987-40592006 None:intergenic 40.0%
ATCCATGCCTTTATGAAGTC+AGG + chr2_4:40591991-40592010 Msa0328350:CDS 40.0%
AACCTGACTTCATAAAGGCA+TGG - chr2_4:40591996-40592015 None:intergenic 40.0%
TTACAAATGTGTCACGTGGA+TGG - chr2_4:40592246-40592265 None:intergenic 40.0%
! ACCTTCTCTTTTTGTGGGAA+AGG + chr2_4:40592594-40592613 Msa0328350:intron 40.0%
! CCTTCTCTTTTTGTGGGAAA+GGG + chr2_4:40592595-40592614 Msa0328350:intron 40.0%
ACAAATTAAGACAGTTGGGG+AGG + chr2_4:40592623-40592642 Msa0328350:intron 40.0%
! GAGACATGTTCCGAGTATTT+TGG - chr2_4:40592980-40592999 None:intergenic 40.0%
CAAATGTCTCATGAGCATCA+AGG - chr2_4:40593460-40593479 None:intergenic 40.0%
CTTGATGCTCATGAGACATT+TGG + chr2_4:40593458-40593477 Msa0328350:intron 40.0%
CTCATGAGACATTTGGTAAG+AGG + chr2_4:40593465-40593484 Msa0328350:intron 40.0%
TATAACCAATGGTTGGATGC+TGG - chr2_4:40593557-40593576 None:intergenic 40.0%
GTCCCACATTTCTTCATTCA+AGG + chr2_4:40593610-40593629 Msa0328350:intron 40.0%
TTTCTTCATTCAAGGCATGC+AGG + chr2_4:40593618-40593637 Msa0328350:intron 40.0%
TAAAAGGTTGGGCTAATTGC+AGG - chr2_4:40593671-40593690 None:intergenic 40.0%
ATCTTTGACAGCTATGGTAG+TGG + chr2_4:40593929-40593948 Msa0328350:intron 40.0%
TAGTGGAATATCATCTGCTG+TGG + chr2_4:40593946-40593965 Msa0328350:CDS 40.0%
AGTGGAATATCATCTGCTGT+GGG + chr2_4:40593947-40593966 Msa0328350:CDS 40.0%
!! GTTGGTGGAATATTAGCCTT+AGG + chr2_4:40594091-40594110 Msa0328350:CDS 40.0%
! TGAATGGTGTCTAAAGCCTA+AGG - chr2_4:40594110-40594129 None:intergenic 40.0%
TTTCAGCATTTGATCGTCGA+CGG - chr2_4:40594323-40594342 None:intergenic 40.0%
AATGCTGAAAATCCCACCAA+AGG + chr2_4:40594333-40594352 Msa0328350:CDS 40.0%
TGAAAATCCCACCAAAGGTT+TGG + chr2_4:40594338-40594357 Msa0328350:CDS 40.0%
GAAAATCCCACCAAAGGTTT+GGG + chr2_4:40594339-40594358 Msa0328350:CDS 40.0%
CAAAATCCCAAACCTTTGGT+GGG - chr2_4:40594348-40594367 None:intergenic 40.0%
TCAAAATCCCAAACCTTTGG+TGG - chr2_4:40594349-40594368 None:intergenic 40.0%
GCTTCAAAATCCCAAACCTT+TGG - chr2_4:40594352-40594371 None:intergenic 40.0%
!!! AAGGTTTGGGATTTTGAAGC+TGG + chr2_4:40594352-40594371 Msa0328350:CDS 40.0%
AGCCTATTATCCTGTTGTAG+AGG + chr2_4:40594426-40594445 Msa0328350:CDS 40.0%
TGCCTCTACAACAGGATAAT+AGG - chr2_4:40594431-40594450 None:intergenic 40.0%
! GAAGTTTGCTTTGATGCAGA+AGG + chr2_4:40594508-40594527 Msa0328350:CDS 40.0%
!! TTGATGAGAGTATTGCACCT+AGG + chr2_4:40594533-40594552 Msa0328350:CDS 40.0%
ATGATGTAACTCTTCACTGG+TGG - chr2_4:40594595-40594614 None:intergenic 40.0%
! GCACCAAAAACAAAGTGTCT+TGG + chr2_4:40594622-40594641 Msa0328350:CDS 40.0%
AGAACAACTCTCTAGTTGCA+TGG - chr2_4:40594757-40594776 None:intergenic 40.0%
AATGTGTCACGTGGATGGAA+AGG - chr2_4:40592241-40592260 None:intergenic 45.0%
CCCTTTCCCACAAAAAGAGA+AGG - chr2_4:40592598-40592617 None:intergenic 45.0%
!!! CATGTTCCGAGTATTTTGGC+TGG - chr2_4:40592976-40592995 None:intergenic 45.0%
GAGCAGACCATTGTCTAGTA+CGG + chr2_4:40593218-40593237 Msa0328350:intron 45.0%
! GTTGCTGGGTCATCTTTTTG+TGG - chr2_4:40593526-40593545 None:intergenic 45.0%
TGCTGGAAAGAATGGTTGCT+GGG - chr2_4:40593540-40593559 None:intergenic 45.0%
ATGCTGGAAAGAATGGTTGC+TGG - chr2_4:40593541-40593560 None:intergenic 45.0%
TGGTTGGATGCTGGAAAGAA+TGG - chr2_4:40593548-40593567 None:intergenic 45.0%
TCTTTCCAGCATCCAACCAT+TGG + chr2_4:40593549-40593568 Msa0328350:intron 45.0%
CGTGAACAGGGTAAAAGGTT+GGG - chr2_4:40593682-40593701 None:intergenic 45.0%
ACGTGAACAGGGTAAAAGGT+TGG - chr2_4:40593683-40593702 None:intergenic 45.0%
GTCAACGTGAACAGGGTAAA+AGG - chr2_4:40593687-40593706 None:intergenic 45.0%
TCATCTGCTGTGGGATTCTA+TGG + chr2_4:40593956-40593975 Msa0328350:CDS 45.0%
!!! TGGGATTTTGAAGCTGGTGA+AGG + chr2_4:40594358-40594377 Msa0328350:CDS 45.0%
!!! GGGATTTTGAAGCTGGTGAA+GGG + chr2_4:40594359-40594378 Msa0328350:CDS 45.0%
!! GAAGGGATGATCATTGACTC+AGG + chr2_4:40594376-40594395 Msa0328350:CDS 45.0%
ACTCTCTAGTTGCATGGAGA+AGG - chr2_4:40594751-40594770 None:intergenic 45.0%
! GGTGTTACAGTTGGAACACC+AGG + chr2_4:40591672-40591691 Msa0328350:CDS 50.0%
TGTCACGTGGATGGAAAGGA+TGG - chr2_4:40592237-40592256 None:intergenic 50.0%
! CTGGAGGGAGTAAGTGGTTT+TGG - chr2_4:40592765-40592784 None:intergenic 50.0%
ATAGGACTGGAGGGAGTAAG+TGG - chr2_4:40592771-40592790 None:intergenic 50.0%
ACGTTGGCCGTACTAGACAA+TGG - chr2_4:40593228-40593247 None:intergenic 50.0%
TTGATCGTCGACGGAGATGC+CGG - chr2_4:40594314-40594333 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 40591100 40595009 40591100 ID=Msa0328350;Name=Msa0328350
chr2_4 mRNA 40591100 40595009 40591100 ID=Msa0328350-mRNA-1;Parent=Msa0328350;Name=Msa0328350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=203|1|1|1|1|1|2|244|511
chr2_4 exon 40591100 40592012 40591100 ID=Msa0328350-mRNA-1:exon:12437;Parent=Msa0328350-mRNA-1
chr2_4 exon 40593940 40595009 40593940 ID=Msa0328350-mRNA-1:exon:12438;Parent=Msa0328350-mRNA-1
chr2_4 five_prime_UTR 40591100 40591302 40591100 ID=Msa0328350-mRNA-1:five_prime_utr;Parent=Msa0328350-mRNA-1
chr2_4 CDS 40591303 40592012 40591303 ID=Msa0328350-mRNA-1:cds;Parent=Msa0328350-mRNA-1
chr2_4 CDS 40593940 40594765 40593940 ID=Msa0328350-mRNA-1:cds;Parent=Msa0328350-mRNA-1
chr2_4 three_prime_UTR 40594766 40595009 40594766 ID=Msa0328350-mRNA-1:three_prime_utr;Parent=Msa0328350-mRNA-1
Gene Sequence

>Msa0328350

ATGCAAATGAAGAGGAAATTGATGCAATGGAGTACACAAATTCTCATGACCCTTTTATTGATTCAAATCATTCATGTTCATAGCATCAACAACGAGGAAGATCATGAAGAGCATGAGAATATGGAGAAGATGAGTCTAGAACTTATCCATAGGCATGATTCAAGATTTCTTGGGGAGATAGATCAAGTTGAAGCTATAAAAGGGTTCGTCAAAAGGGATATATTTAGAAGGGAAATGATGGATCAAAGAATAGGAATGAATTATCAAGGTGGTCATGGTAATAATAGAAGAAAAGACATTGAAATGAAACAAGATTTTGAATTTTCAATGCATTCAGGAAGAGATGTTGAAATTGGTGAATATTTTGTTGGTGTTACAGTTGGAACACCAGGACAAAAGTTTTGGCTTATTGCTGATACAGGAAGTGAGTTAACTTGGTTTAAATGTATGAGAAAGGTTCATCATAATCACCAACATAAACATAAACATAATAAACATAAAGGAGGGTCAAAGACAAAATCAAGAACAAAATCTCATACAGCAAGAAGAAGAAGGGCTCATTCTCATAATCCTTGTGATGATATGTTTTGTCCACATCGTTCTCATACATTTCATCAAATTTCTTGTTCATCTAAAATGTGCATTGCTGAACTTCCTTATAGTTTGACTGATTGTCAAAGTCCTTCTGATCCATGCCTTTATGAAGTCAGCTATGGTAGTGGAATATCATCTGCTGTGGGATTCTATGGCACTGACACAATATCAATAAACCTAAGCAATAAAAAGATAGGAAAGCTTCAAAATCAAACAATTGGATGCACACAATCAGTGATAAATAGTCCAGGTTTCCCATATGAAAATGTTGGTGGAATATTAGCCTTAGGCTTTAGACACCATTCATTTGTTGACAATGCTGGTCTAAAATTTGGTTCAAAATTTTCCTATTGTCTTGTTGACCATTTGAGCCACAAAAATGTTTCAAGCTACCTAACATTTGGAACAACTCCAAAAGTCAAATTGTTGAGTGAAATCAAAAGAACAGACATGCTTCTCTATCAACCATTTTATGGTGTGAATGTTACCGGCATCTCCGTCGACGATCAAATGCTGAAAATCCCACCAAAGGTTTGGGATTTTGAAGCTGGTGAAGGGATGATCATTGACTCAGGTTTTACCTTAACTGCACTTGTTCTTGAAGCCTATTATCCTGTTGTAGAGGCATTGAAAAAATCTTTGCACAATGTGAAAACGATTAATGATCCAAATAATGGTGGTTTGGAAGTTTGCTTTGATGCAGAAGGTTTTGATGAGAGTATTGCACCTAGGTTAGTGTTTCATTTTGGTGGAGGAATAAGGTTTGAACCACCAGTGAAGAGTTACATCATTGATGCTGCACCAAAAACAAAGTGTCTTGGATTTTTGCCAGTAAATGGAACACGTAATTCTATTATTGGTAATATTATGCAGCAAAATCATCTTTGGGAATTTGATATTTATAAAAACACTATTGGTTTTGCTCCTTCTCCATGCAACTAG
Protein sequence

>Msa0328350

MQMKRKLMQWSTQILMTLLLIQIIHVHSINNEEDHEEHENMEKMSLELIHRHDSRFLGEIDQVEAIKGFVKRDIFRREMMDQRIGMNYQGGHGNNRRKDIEMKQDFEFSMHSGRDVEIGEYFVGVTVGTPGQKFWLIADTGSELTWFKCMRKVHHNHQHKHKHNKHKGGSKTKSRTKSHTARRRRAHSHNPCDDMFCPHRSHTFHQISCSSKMCIAELPYSLTDCQSPSDPCLYEVSYGSGISSAVGFYGTDTISINLSNKKIGKLQNQTIGCTQSVINSPGFPYENVGGILALGFRHHSFVDNAGLKFGSKFSYCLVDHLSHKNVSSYLTFGTTPKVKLLSEIKRTDMLLYQPFYGVNVTGISVDDQMLKIPPKVWDFEAGEGMIIDSGFTLTALVLEAYYPVVEALKKSLHNVKTINDPNNGGLEVCFDAEGFDESIAPRLVFHFGGGIRFEPPVKSYIIDAAPKTKCLGFLPVNGTRNSIIGNIMQQNHLWEFDIYKNTIGFAPSPCN*