AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227440 MtrunA17_Chr2g0309561 91.270 504 40 3 1 503 1 501 0.0 896
Msa0227440 MtrunA17_Chr5g0442921 26.877 506 291 15 34 503 84 546 2.06e-33 133
Msa0227440 MtrunA17_Chr3g0130931 26.969 508 281 22 14 506 12 444 5.24e-32 128
Msa0227440 MtrunA17_Chr6g0484901 26.154 455 259 17 61 503 95 484 3.42e-31 126
Msa0227440 MtrunA17_Chr3g0095891 27.215 474 271 14 63 503 19 451 8.62e-31 124
Msa0227440 MtrunA17_Chr1g0210201 26.933 401 221 14 112 503 123 460 4.09e-28 117
Msa0227440 MtrunA17_Chr7g0275731 28.261 414 230 17 95 498 116 472 5.56e-28 117
Msa0227440 MtrunA17_Chr3g0099891 26.817 399 213 13 113 498 110 442 6.37e-28 116
Msa0227440 MtrunA17_Chr3g0099901 27.525 396 222 13 112 498 134 473 3.57e-27 114
Msa0227440 MtrunA17_Chr8g0352671 27.778 396 225 15 117 503 86 429 1.65e-26 112
Msa0227440 MtrunA17_Chr8g0352661 27.543 403 216 17 119 503 85 429 2.36e-24 105
Msa0227440 MtrunA17_Chr5g0395931 27.723 404 233 15 118 513 86 438 2.85e-24 105
Msa0227440 MtrunA17_Chr5g0415951 27.778 396 236 14 121 513 89 437 1.18e-23 103
Msa0227440 MtrunA17_Chr5g0435871 27.487 382 228 12 119 498 88 422 1.18e-23 103
Msa0227440 MtrunA17_Chr1g0212321 25.506 494 282 17 14 490 42 466 1.35e-23 103
Msa0227440 MtrunA17_Chr5g0435971 27.225 382 229 12 119 498 85 419 4.69e-23 101
Msa0227440 MtrunA17_Chr5g0395911 26.551 403 238 14 118 513 65 416 1.21e-22 100
Msa0227440 MtrunA17_Chr1g0165201 24.786 468 258 18 35 490 64 449 3.64e-22 99.4
Msa0227440 MtrunA17_Chr2g0320621 26.456 412 234 14 107 498 63 425 1.25e-21 97.8
Msa0227440 MtrunA17_Chr6g0457401 25.577 477 280 17 46 513 29 439 2.86e-21 96.3
Msa0227440 MtrunA17_Chr6g0486981 25.564 399 243 14 120 512 88 438 3.31e-21 96.3
Msa0227440 MtrunA17_Chr8g0386441 26.684 386 224 15 119 498 85 417 3.80e-21 95.9
Msa0227440 MtrunA17_Chr4g0027681 23.590 390 247 10 119 498 76 424 4.87e-20 93.2
Msa0227440 MtrunA17_Chr2g0333991 23.373 415 244 14 107 503 70 428 8.59e-20 92.0
Msa0227440 MtrunA17_Chr1g0189381 23.040 421 265 14 92 498 42 417 9.18e-20 92.0
Msa0227440 MtrunA17_Chr6g0487471 25.515 388 231 13 119 498 85 422 3.33e-19 90.1
Msa0227440 MtrunA17_Chr3g0087851 25.495 404 239 16 119 512 87 438 5.48e-19 89.4
Msa0227440 MtrunA17_Chr2g0310801 26.383 470 270 20 36 498 21 421 5.04e-18 86.7
Msa0227440 MtrunA17_Chr2g0310821 25.732 478 254 23 36 498 39 430 5.51e-18 86.7
Msa0227440 MtrunA17_Chr2g0308001 26.768 396 226 16 120 503 58 401 5.55e-18 86.3
Msa0227440 MtrunA17_Chr7g0267171 25.307 407 235 16 119 498 89 453 5.80e-18 86.7
Msa0227440 MtrunA17_Chr7g0265331 24.444 405 252 13 106 498 66 428 8.16e-18 86.3
Msa0227440 MtrunA17_Chr1g0179751 23.753 421 269 12 92 500 79 459 4.11e-17 84.3
Msa0227440 MtrunA17_Chr1g0164401 23.517 489 271 21 26 498 15 416 4.16e-17 83.6
Msa0227440 MtrunA17_Chr3g0110191 23.474 426 239 13 95 500 70 428 9.91e-17 82.4
Msa0227440 MtrunA17_Chr5g0401601 23.785 391 234 11 119 497 87 425 1.17e-16 83.2
Msa0227440 MtrunA17_Chr2g0307991 24.433 397 247 13 120 512 59 406 1.37e-16 82.0
Msa0227440 MtrunA17_Chr5g0395891 28.662 314 198 14 208 513 20 315 2.25e-16 80.1
Msa0227440 MtrunA17_Chr2g0311451 22.336 488 278 17 37 503 21 428 3.43e-16 80.9
Msa0227440 MtrunA17_Chr5g0395871 27.848 395 208 16 119 498 80 412 6.83e-16 79.7
Msa0227440 MtrunA17_Chr7g0221681 23.799 437 265 18 81 498 34 421 1.62e-15 79.0
Msa0227440 MtrunA17_Chr8g0390761 23.844 411 242 14 105 505 101 450 2.09e-15 78.6
Msa0227440 MtrunA17_Chr4g0053721 23.291 395 239 11 119 501 79 421 2.39e-15 79.0
Msa0227440 MtrunA17_Chr4g0001991 25.806 434 253 17 73 497 131 504 4.54e-15 77.8
Msa0227440 MtrunA17_Chr2g0307461 24.010 404 239 13 121 505 71 425 5.26e-15 77.0
Msa0227440 MtrunA17_Chr8g0352691 26.148 283 163 13 247 512 8 261 2.04e-13 70.5
Msa0227440 MtrunA17_Chr4g0023351 28.148 270 142 12 120 385 58 279 3.53e-13 70.1
Msa0227440 MtrunA17_Chr5g0419151 28.731 268 169 12 239 500 106 357 1.88e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227440 AT3G12700.1 34.608 497 251 14 13 503 25 453 8.57e-91 285
Msa0227440 AT3G25700.1 31.340 418 228 15 96 497 62 436 9.31e-46 166
Msa0227440 AT3G18490.1 26.250 480 267 15 36 505 93 495 6.45e-36 140
Msa0227440 AT1G25510.1 27.027 481 285 17 31 503 54 476 2.17e-33 132
Msa0227440 AT1G01300.1 29.925 401 218 16 106 498 127 472 7.34e-31 125
Msa0227440 AT5G10770.1 25.268 467 282 14 38 497 54 460 1.03e-29 122
Msa0227440 AT3G61820.1 28.297 417 234 16 94 498 108 471 4.90e-29 120
Msa0227440 AT2G42980.1 28.155 412 237 11 109 503 148 517 1.36e-27 116
Msa0227440 AT3G59080.1 27.512 418 230 12 109 503 158 525 1.96e-27 116
Msa0227440 AT1G64830.1 27.456 397 205 16 119 497 84 415 1.91e-26 112
Msa0227440 AT5G33340.1 28.463 397 214 16 119 502 88 427 2.18e-24 106
Msa0227440 AT5G10760.1 25.910 467 259 18 43 498 62 452 1.79e-23 103
Msa0227440 AT2G35615.1 26.243 503 283 18 11 498 2 431 3.75e-23 102
Msa0227440 AT1G31450.1 27.578 417 239 13 95 498 63 429 3.80e-21 96.7
Msa0227440 AT5G22850.1 24.242 396 240 10 118 498 78 428 8.66e-21 95.9
Msa0227440 AT1G08210.4 25.253 396 237 11 118 500 115 464 1.04e-20 95.9
Msa0227440 AT1G08210.3 25.253 396 237 11 118 500 129 478 1.14e-20 95.9
Msa0227440 AT1G08210.1 25.253 396 237 11 118 500 81 430 1.15e-20 95.5
Msa0227440 AT3G54400.1 26.471 408 220 17 110 503 76 417 4.96e-19 90.1
Msa0227440 AT3G20015.1 24.520 469 287 15 35 497 50 457 9.10e-19 89.4
Msa0227440 AT1G08210.2 25.984 381 223 11 118 485 81 415 9.12e-19 89.7
Msa0227440 AT1G09750.1 24.688 401 233 16 110 498 93 436 3.04e-18 87.8
Msa0227440 AT3G02740.1 25.250 400 228 16 117 498 81 427 1.49e-17 85.9
Msa0227440 AT5G37540.1 26.884 398 216 16 123 498 82 426 8.52e-17 83.2
Msa0227440 AT3G02740.2 25.000 396 226 16 121 498 10 352 3.14e-16 81.3
Msa0227440 AT4G30030.1 24.742 388 216 14 119 492 76 401 3.98e-16 80.9
Msa0227440 AT3G59080.2 28.667 300 181 10 224 503 203 489 5.73e-16 80.9
Msa0227440 AT2G28220.1 24.873 394 216 16 121 504 67 390 1.06e-15 79.7
Msa0227440 AT2G23945.1 26.648 364 185 15 108 453 83 382 1.61e-15 79.3
Msa0227440 AT3G25700.2 37.607 117 68 3 384 497 220 334 2.04e-15 78.2
Msa0227440 AT2G36670.2 23.445 418 267 13 93 500 73 447 2.75e-15 79.0
Msa0227440 AT2G36670.1 23.590 390 246 12 121 500 105 452 3.89e-14 75.5
Msa0227440 AT1G77480.2 25.124 402 232 15 112 497 58 406 4.15e-14 74.7
Msa0227440 AT1G77480.1 25.124 402 232 15 112 497 58 406 5.22e-14 74.7
Msa0227440 AT1G05840.1 24.594 431 255 19 92 503 52 431 5.78e-14 74.7
Msa0227440 AT2G36670.4 23.797 395 239 12 121 500 34 381 1.09e-13 73.6
Msa0227440 AT2G36670.3 23.797 395 239 12 121 500 34 381 1.09e-13 73.6
Msa0227440 AT5G36260.1 22.556 399 247 12 114 498 71 421 1.31e-13 73.6
Msa0227440 AT2G28030.1 24.346 382 216 13 121 497 61 374 4.05e-12 68.6
Msa0227440 AT1G79720.1 25.307 407 230 15 107 497 121 469 7.23e-12 68.2
Msa0227440 AT5G02190.1 23.585 318 177 12 130 430 82 350 8.76e-11 64.7

Find 94 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCAAACCACCATTATT+TGG 0.179270 2_1:+78545614 None:intergenic
GAATGATTTGAATCAATAAA+AGG 0.191126 2_1:+78548931 None:intergenic
GGAACACGTAATTCTATTAT+TGG 0.204040 2_1:-78545443 Msa0227440:CDS
ACCATTATTTGGATCATTAA+TGG 0.207608 2_1:+78545625 None:intergenic
GAATTACGTGTTCCATTTAC+TGG 0.216571 2_1:+78545452 None:intergenic
GACAATGCTGGTCTAAAATT+TGG 0.217971 2_1:-78545968 Msa0227440:CDS
GATCAAGTTGAAGCTATAAA+AGG 0.233864 2_1:-78548801 Msa0227440:CDS
CCTAGGTTAGTGTTTCATTT+TGG 0.250952 2_1:-78545554 Msa0227440:CDS
AAAAGAGAGAGAGAAGAAAA+AGG 0.267425 2_1:+78549134 None:intergenic
TCACTCAACAATTTGACTTT+AGG 0.269056 2_1:+78545869 None:intergenic
TTATGCAGCAAAATCATCTT+TGG 0.272951 2_1:-78545415 Msa0227440:CDS
TCATCAGCTGTGGGATTCTA+TGG 0.292908 2_1:-78546148 Msa0227440:CDS
GAACACCAGGTCAAAAGTTT+TGG 0.302891 2_1:-78548599 Msa0227440:CDS
TCAGGAAGAGATGTTGAAAT+TGG 0.314062 2_1:-78548648 Msa0227440:CDS
TCAAAAGGGATATATTTAGA+AGG 0.328714 2_1:-78548773 Msa0227440:CDS
ACCATTAATGATCCAAATAA+TGG 0.339168 2_1:-78545626 Msa0227440:CDS
TGAAAATACCACCAAAGGTT+TGG 0.339533 2_1:-78545766 Msa0227440:CDS
GTAACATTCACACCATAAAA+TGG 0.341602 2_1:+78545815 None:intergenic
GTTTCAAGCTACCTAACATT+TGG 0.348267 2_1:-78545899 Msa0227440:CDS
GAAAATACCACCAAAGGTTT+GGG 0.356538 2_1:-78545765 Msa0227440:CDS
TGCCTCTACAACAGGATAAT+AGG 0.358648 2_1:+78545676 None:intergenic
TCATGAAGAGCATGAGAATA+TGG 0.359184 2_1:-78548880 Msa0227440:CDS
AGGCATGATTCAAGATTTCT+TGG 0.371809 2_1:-78548831 Msa0227440:CDS
TGATATTTATAAAACACTAT+TGG 0.372983 2_1:-78545387 Msa0227440:CDS
TGACAATCAGTCAAACTATA+AGG 0.373919 2_1:+78548327 None:intergenic
ATCCATGCCTTTATGAAGTC+AGG 0.375990 2_1:-78548293 Msa0227440:intron
CTCTGATGTTAATGATTCAA+TGG 0.376518 2_1:-78545166 Msa0227440:three_prime_UTR
TAGGAGTTGCTCCAAATGTT+AGG 0.384814 2_1:+78545888 None:intergenic
AAGCTTCAAAATCAAACAAT+TGG 0.385729 2_1:-78546082 Msa0227440:CDS
TGATCCAAATAATGGTGGTT+TGG 0.393986 2_1:-78545618 Msa0227440:CDS
CAAATGATCAACAAGACAAT+AGG 0.405740 2_1:+78545934 None:intergenic
TTCAAGAACAAGTGCAGTTA+AGG 0.408146 2_1:+78545700 None:intergenic
TATGCAGCAAAATCATCTTT+GGG 0.427055 2_1:-78545414 Msa0227440:CDS
TTGGTTTAAATGTATGAGAA+AGG 0.428615 2_1:-78548547 Msa0227440:CDS
GTAATGAAATTGTGAATAAG+AGG 0.431201 2_1:+78549105 None:intergenic
CTATAAAAGGGTTCATCAAA+AGG 0.433627 2_1:-78548788 Msa0227440:CDS
GGCATGATTCAAGATTTCTT+GGG 0.435229 2_1:-78548830 Msa0227440:CDS
CATAAACATAATAAACATAA+AGG 0.437149 2_1:-78548501 Msa0227440:CDS
GCTTCAAAATCCCAAACCTT+TGG 0.441065 2_1:+78545755 None:intergenic
AAACAAACCTGACTTCATAA+AGG 0.442694 2_1:+78548286 None:intergenic
CATTCATTTGTTGACAATGC+TGG 0.443741 2_1:-78545980 Msa0227440:CDS
ATATTTGTACTTGTGATTCA+AGG 0.448474 2_1:+78549079 None:intergenic
GTTGGTGGAATATTAGCCTT+AGG 0.448786 2_1:-78546013 Msa0227440:CDS
TATTATGTTTATGTTTATGT+TGG 0.454187 2_1:+78548511 None:intergenic
ATACAGGAAGTGAGTTAACT+TGG 0.474918 2_1:-78548566 Msa0227440:CDS
GAAATCTTGAATCATGCCTA+TGG 0.478263 2_1:+78548835 None:intergenic
GAAATGATGGATCAAAGAAT+AGG 0.483791 2_1:-78548750 Msa0227440:CDS
AATGATTTGAATCAATAAAA+GGG 0.488996 2_1:+78548932 None:intergenic
ATGTTAATGATTCAATGGTA+TGG 0.492588 2_1:-78545161 Msa0227440:three_prime_UTR
CTCATACAGCAAGAAGAAGA+AGG 0.494652 2_1:-78548449 Msa0227440:CDS
TATATTTAGAAGGGAAATGA+TGG 0.495318 2_1:-78548763 Msa0227440:CDS
ATCAAGTTGAAGCTATAAAA+GGG 0.495500 2_1:-78548800 Msa0227440:CDS
TCAAAATCCCAAACCTTTGG+TGG 0.503674 2_1:+78545758 None:intergenic
TATAAAAGGGTTCATCAAAA+GGG 0.507128 2_1:-78548787 Msa0227440:CDS
ATGAATTATCAAGGTGGTCA+TGG 0.510467 2_1:-78548726 Msa0227440:CDS
ATCTTTGACAGCTATGGTAG+TGG 0.513051 2_1:-78546175 Msa0227440:intron
TGAAGAGGAAATTGATGCAA+TGG 0.528126 2_1:-78548974 Msa0227440:CDS
AGAATAGGAATGAATTATCA+AGG 0.529627 2_1:-78548735 Msa0227440:CDS
TTCCCATATGAAAATGTTGG+TGG 0.533682 2_1:-78546028 Msa0227440:CDS
CAGCATTGTCAACAAATGAA+TGG 0.541187 2_1:+78545981 None:intergenic
ACTCTCTAGTTGCATGGAGA+AGG 0.546138 2_1:+78545357 None:intergenic
CAAAAGGGATATATTTAGAA+GGG 0.548098 2_1:-78548772 Msa0227440:CDS
TGAATGGTGTCTAAAGCCTA+AGG 0.550436 2_1:+78545997 None:intergenic
TCATAAAGGCATGGATCAGA+AGG 0.555785 2_1:+78548300 None:intergenic
TCAATGATGTAACTCTTCAC+TGG 0.557173 2_1:+78545509 None:intergenic
TATTTGTACTTGTGATTCAA+GGG 0.559719 2_1:+78549080 None:intergenic
GGTTTCCCATATGAAAATGT+TGG 0.562696 2_1:-78546031 Msa0227440:CDS
AGAACAACTCTCTAGTTGCA+TGG 0.577195 2_1:+78545351 None:intergenic
GCATGATTCAAGATTTCTTG+GGG 0.578453 2_1:-78548829 Msa0227440:CDS
TATCTAATATGCAAATGAAG+AGG 0.579339 2_1:-78548989 Msa0227440:exon
AAACATAATAAACATAAAGG+AGG 0.582793 2_1:-78548498 Msa0227440:CDS
CCAAAATGAAACACTAACCT+AGG 0.589520 2_1:+78545554 None:intergenic
TCATACAGCAAGAAGAAGAA+GGG 0.591156 2_1:-78548448 Msa0227440:CDS
TTGATGAGAGTATTGCGCCT+AGG 0.591169 2_1:-78545571 Msa0227440:CDS
AGCCTATTATCCTGTTGTAG+AGG 0.592083 2_1:-78545678 Msa0227440:CDS
TAATGAAATTGTGAATAAGA+GGG 0.593140 2_1:+78549106 None:intergenic
GGTGTTACAGTTGGAACACC+AGG 0.594771 2_1:-78548612 Msa0227440:CDS
GAAGGGATGATCATTGACTC+AGG 0.595985 2_1:-78545728 Msa0227440:CDS
TTTCAGCATTTGATCGTCGA+CGG 0.598961 2_1:+78545784 None:intergenic
AACCTGACTTCATAAAGGCA+TGG 0.599467 2_1:+78548291 None:intergenic
ATTAATGATCCAAATAATGG+TGG 0.600681 2_1:-78545623 Msa0227440:CDS
AATGCTGAAAATACCACCAA+AGG 0.605104 2_1:-78545771 Msa0227440:CDS
TGTTAATGATTCAATGGTAT+GGG 0.605609 2_1:-78545160 Msa0227440:three_prime_UTR
TAGTGGAATATCATCAGCTG+TGG 0.608753 2_1:-78546158 Msa0227440:CDS
AACATAATAAACATAAAGGA+GGG 0.609603 2_1:-78548497 Msa0227440:CDS
CAATCAGTGATAAATAGTCC+AGG 0.618605 2_1:-78546052 Msa0227440:CDS
TGAGTCTAGAACTTATCCAT+AGG 0.624401 2_1:-78548851 Msa0227440:CDS
TTACTATTTGAGGTGTGTCG+AGG 0.632858 2_1:+78549186 None:intergenic
AGTGGAATATCATCAGCTGT+GGG 0.653217 2_1:-78546157 Msa0227440:CDS
ATGATGTAACTCTTCACTGG+TGG 0.683679 2_1:+78545512 None:intergenic
GGACAAAACATATCATCACA+AGG 0.716631 2_1:+78548411 None:intergenic
ATAGGAATGAATTATCAAGG+TGG 0.746997 2_1:-78548732 Msa0227440:CDS
TGTTCATAGCATCAACAACG+AGG 0.756855 2_1:-78548907 Msa0227440:CDS
TGAAATGTATGAGAACGATG+AGG 0.786483 2_1:+78548390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGAAACAATTAA+AGG - chr2_1:78546564-78546583 Msa0227440:intron 10.0%
!! AAAAAGTAATAAATAGTTAA+AGG - chr2_1:78546680-78546699 Msa0227440:intron 10.0%
!!! AAATTTCTAGTATTTATTTT+AGG - chr2_1:78548043-78548062 Msa0227440:intron 10.0%
!!! TTTTTTTTTGAAACAATTAA+AGG - chr2_1:78546564-78546583 Msa0227440:intron 10.0%
!! AAAAAGTAATAAATAGTTAA+AGG - chr2_1:78546680-78546699 Msa0227440:intron 10.0%
!!! AAATTTCTAGTATTTATTTT+AGG - chr2_1:78548043-78548062 Msa0227440:intron 10.0%
!! AATGATTTGAATCAATAAAA+GGG + chr2_1:78545375-78545394 None:intergenic 15.0%
!! TATTATGTTTATGTTTATGT+TGG + chr2_1:78545796-78545815 None:intergenic 15.0%
!! CATAAACATAATAAACATAA+AGG - chr2_1:78545803-78545822 Msa0227440:CDS 15.0%
!! AAAAATAAAACATGAAAAGA+AGG + chr2_1:78546052-78546071 None:intergenic 15.0%
!!! TTAATTTTGTTTTGTTTTGA+TGG - chr2_1:78546106-78546125 Msa0227440:CDS 15.0%
!!! CAAAAAATTAGAAGATTTTT+AGG - chr2_1:78546178-78546197 Msa0227440:intron 15.0%
!!! ATCAAAATGGTAATTTATTT+TGG + chr2_1:78546296-78546315 None:intergenic 15.0%
!! TTAAATATATTGAATTGAGA+TGG + chr2_1:78546385-78546404 None:intergenic 15.0%
!! ATCTCAATTCAATATATTTA+AGG - chr2_1:78546384-78546403 Msa0227440:intron 15.0%
!! TCTCAATTCAATATATTTAA+GGG - chr2_1:78546385-78546404 Msa0227440:intron 15.0%
!! AGAGATATATTAATATGTAT+TGG + chr2_1:78546418-78546437 None:intergenic 15.0%
!!! GTCAAATGTTTTTTATAAAT+AGG + chr2_1:78546805-78546824 None:intergenic 15.0%
!!! TTAATCTCTAAAAAACTAAA+TGG - chr2_1:78547385-78547404 Msa0227440:intron 15.0%
!! TTATAAATGAGAATTAATGT+TGG - chr2_1:78547586-78547605 Msa0227440:intron 15.0%
!!! CTTTTCAATTTAAATTTGAA+AGG + chr2_1:78547747-78547766 None:intergenic 15.0%
!! GAAAACTATGTATTAAAAAT+TGG + chr2_1:78547996-78548015 None:intergenic 15.0%
!! AAATTTAAAGACATGTATTA+AGG + chr2_1:78548029-78548048 None:intergenic 15.0%
!! TGATATTTATAAAACACTAT+TGG - chr2_1:78548917-78548936 Msa0227440:CDS 15.0%
!! AATGATTTGAATCAATAAAA+GGG + chr2_1:78545375-78545394 None:intergenic 15.0%
!! TATTATGTTTATGTTTATGT+TGG + chr2_1:78545796-78545815 None:intergenic 15.0%
!! CATAAACATAATAAACATAA+AGG - chr2_1:78545803-78545822 Msa0227440:CDS 15.0%
!! AAAAATAAAACATGAAAAGA+AGG + chr2_1:78546052-78546071 None:intergenic 15.0%
!!! TTAATTTTGTTTTGTTTTGA+TGG - chr2_1:78546106-78546125 Msa0227440:CDS 15.0%
!!! CAAAAAATTAGAAGATTTTT+AGG - chr2_1:78546178-78546197 Msa0227440:intron 15.0%
!!! ATCAAAATGGTAATTTATTT+TGG + chr2_1:78546296-78546315 None:intergenic 15.0%
!! TTAAATATATTGAATTGAGA+TGG + chr2_1:78546385-78546404 None:intergenic 15.0%
!! ATCTCAATTCAATATATTTA+AGG - chr2_1:78546384-78546403 Msa0227440:intron 15.0%
!! TCTCAATTCAATATATTTAA+GGG - chr2_1:78546385-78546404 Msa0227440:intron 15.0%
!! AGAGATATATTAATATGTAT+TGG + chr2_1:78546418-78546437 None:intergenic 15.0%
!!! GTCAAATGTTTTTTATAAAT+AGG + chr2_1:78546805-78546824 None:intergenic 15.0%
!!! TTAATCTCTAAAAAACTAAA+TGG - chr2_1:78547385-78547404 Msa0227440:intron 15.0%
!! TTATAAATGAGAATTAATGT+TGG - chr2_1:78547586-78547605 Msa0227440:intron 15.0%
!!! CTTTTCAATTTAAATTTGAA+AGG + chr2_1:78547747-78547766 None:intergenic 15.0%
!! GAAAACTATGTATTAAAAAT+TGG + chr2_1:78547996-78548015 None:intergenic 15.0%
!! AAATTTAAAGACATGTATTA+AGG + chr2_1:78548029-78548048 None:intergenic 15.0%
!! TGATATTTATAAAACACTAT+TGG - chr2_1:78548917-78548936 Msa0227440:CDS 15.0%
!! TAATGAAATTGTGAATAAGA+GGG + chr2_1:78545201-78545220 None:intergenic 20.0%
!! GAATGATTTGAATCAATAAA+AGG + chr2_1:78545376-78545395 None:intergenic 20.0%
!! AAACATAATAAACATAAAGG+AGG - chr2_1:78545806-78545825 Msa0227440:CDS 20.0%
!! AACATAATAAACATAAAGGA+GGG - chr2_1:78545807-78545826 Msa0227440:CDS 20.0%
!! TATTGTCTTGAAAATCAAAA+TGG + chr2_1:78546309-78546328 None:intergenic 20.0%
!! TATATTTAACTATGCTTCTA+TGG - chr2_1:78546437-78546456 Msa0227440:intron 20.0%
!! GAGAAAAGATGATAAATTAA+AGG - chr2_1:78546529-78546548 Msa0227440:intron 20.0%
!!! ATGTTTTTTATAAATAGGAC+TGG + chr2_1:78546800-78546819 None:intergenic 20.0%
!! AATCAATGTGTTTGATTATA+TGG - chr2_1:78547319-78547338 Msa0227440:intron 20.0%
!! AATATAAGTCAATATATGTG+AGG + chr2_1:78547422-78547441 None:intergenic 20.0%
!! TAATTCTCATTTATAACCAA+TGG + chr2_1:78547582-78547601 None:intergenic 20.0%
!! ATTTAAATTTGAAAGGAGTA+AGG + chr2_1:78547740-78547759 None:intergenic 20.0%
!! CAAAAGTTTGATAAATGAAT+TGG - chr2_1:78547784-78547803 Msa0227440:intron 20.0%
!!! AACCACTTTTTAATAACTTT+TGG - chr2_1:78547836-78547855 Msa0227440:intron 20.0%
!!! AATGTTTTTTCTTATTCTCA+TGG - chr2_1:78548983-78549002 Msa0227440:CDS 20.0%
!!! TTTTGTGTATTTGATTGAAT+TGG - chr2_1:78549018-78549037 Msa0227440:five_prime_UTR 20.0%
!! TAATGAAATTGTGAATAAGA+GGG + chr2_1:78545201-78545220 None:intergenic 20.0%
!! GAATGATTTGAATCAATAAA+AGG + chr2_1:78545376-78545395 None:intergenic 20.0%
!! AAACATAATAAACATAAAGG+AGG - chr2_1:78545806-78545825 Msa0227440:CDS 20.0%
!! AACATAATAAACATAAAGGA+GGG - chr2_1:78545807-78545826 Msa0227440:CDS 20.0%
!! TATTGTCTTGAAAATCAAAA+TGG + chr2_1:78546309-78546328 None:intergenic 20.0%
!! TATATTTAACTATGCTTCTA+TGG - chr2_1:78546437-78546456 Msa0227440:intron 20.0%
!! GAGAAAAGATGATAAATTAA+AGG - chr2_1:78546529-78546548 Msa0227440:intron 20.0%
!!! ATGTTTTTTATAAATAGGAC+TGG + chr2_1:78546800-78546819 None:intergenic 20.0%
!! AATCAATGTGTTTGATTATA+TGG - chr2_1:78547319-78547338 Msa0227440:intron 20.0%
!! AATATAAGTCAATATATGTG+AGG + chr2_1:78547422-78547441 None:intergenic 20.0%
!! TAATTCTCATTTATAACCAA+TGG + chr2_1:78547582-78547601 None:intergenic 20.0%
!! ATTTAAATTTGAAAGGAGTA+AGG + chr2_1:78547740-78547759 None:intergenic 20.0%
!! CAAAAGTTTGATAAATGAAT+TGG - chr2_1:78547784-78547803 Msa0227440:intron 20.0%
!!! AACCACTTTTTAATAACTTT+TGG - chr2_1:78547836-78547855 Msa0227440:intron 20.0%
!!! AATGTTTTTTCTTATTCTCA+TGG - chr2_1:78548983-78549002 Msa0227440:CDS 20.0%
!!! TTTTGTGTATTTGATTGAAT+TGG - chr2_1:78549018-78549037 Msa0227440:five_prime_UTR 20.0%
!! AGATTGTGTTTTACTATTTG+AGG + chr2_1:78545131-78545150 None:intergenic 25.0%
! GTAATGAAATTGTGAATAAG+AGG + chr2_1:78545202-78545221 None:intergenic 25.0%
! TATTTGTACTTGTGATTCAA+GGG + chr2_1:78545227-78545246 None:intergenic 25.0%
! ATATTTGTACTTGTGATTCA+AGG + chr2_1:78545228-78545247 None:intergenic 25.0%
! TATCTAATATGCAAATGAAG+AGG - chr2_1:78545315-78545334 Msa0227440:three_prime_UTR 25.0%
!!! ATCAAGTTGAAGCTATAAAA+GGG - chr2_1:78545504-78545523 Msa0227440:CDS 25.0%
! TATAAAAGGGTTCATCAAAA+GGG - chr2_1:78545517-78545536 Msa0227440:CDS 25.0%
! TCAAAAGGGATATATTTAGA+AGG - chr2_1:78545531-78545550 Msa0227440:CDS 25.0%
! CAAAAGGGATATATTTAGAA+GGG - chr2_1:78545532-78545551 Msa0227440:CDS 25.0%
! TATATTTAGAAGGGAAATGA+TGG - chr2_1:78545541-78545560 Msa0227440:CDS 25.0%
! AGAATAGGAATGAATTATCA+AGG - chr2_1:78545569-78545588 Msa0227440:CDS 25.0%
!! TTTGAATTTTCAATGCATTC+AGG - chr2_1:78545638-78545657 Msa0227440:CDS 25.0%
!! GAAATTGGTGAATATTTTGT+TGG - chr2_1:78545671-78545690 Msa0227440:CDS 25.0%
! TTGGTTTAAATGTATGAGAA+AGG - chr2_1:78545757-78545776 Msa0227440:CDS 25.0%
!!! TTTGCTAGAAAATTGTTTTG+TGG - chr2_1:78546070-78546089 Msa0227440:CDS 25.0%
!!! TTGCTAGAAAATTGTTTTGT+GGG - chr2_1:78546071-78546090 Msa0227440:CDS 25.0%
!! TTTTGTTGCAAGTAGATTAT+AGG - chr2_1:78546141-78546160 Msa0227440:CDS 25.0%
!! AGTAGATTATAGGATTGTTT+TGG - chr2_1:78546151-78546170 Msa0227440:CDS 25.0%
!!! TTTTACCTTTTGCTTTTTCA+TGG - chr2_1:78546469-78546488 Msa0227440:intron 25.0%
!! ACAATTAAAGGCTATCTTTT+TGG - chr2_1:78546576-78546595 Msa0227440:intron 25.0%
! AAAAAGAGAAGGTAAATTTG+AGG + chr2_1:78546603-78546622 None:intergenic 25.0%
!! AAATTTACCTTCTCTTTTTG+TGG - chr2_1:78546604-78546623 Msa0227440:intron 25.0%
!! AATTTACCTTCTCTTTTTGT+GGG - chr2_1:78546605-78546624 Msa0227440:intron 25.0%
!! TTTTTATAAATAGGACTGGA+GGG + chr2_1:78546796-78546815 None:intergenic 25.0%
!!! TTTTTTATAAATAGGACTGG+AGG + chr2_1:78546797-78546816 None:intergenic 25.0%
! CATTGCATAAATGATGAATT+TGG - chr2_1:78546835-78546854 Msa0227440:intron 25.0%
! ATTGTAACACATAGTCAAAA+CGG + chr2_1:78547061-78547080 None:intergenic 25.0%
! CCAATTGAAATTGAAATCTT+TGG + chr2_1:78547159-78547178 None:intergenic 25.0%
! CCAAAGATTTCAATTTCAAT+TGG - chr2_1:78547156-78547175 Msa0227440:intron 25.0%
! AGATTTCAATTTCAATTGGT+TGG - chr2_1:78547160-78547179 Msa0227440:intron 25.0%
!!! AATTGGTTGGTTTGTTTATA+AGG - chr2_1:78547173-78547192 Msa0227440:intron 25.0%
!! TCTTAAGTGCACATTAATTT+TGG + chr2_1:78547210-78547229 None:intergenic 25.0%
!! CAAACACATTGATTATTGAT+GGG + chr2_1:78547313-78547332 None:intergenic 25.0%
!! TCAAACACATTGATTATTGA+TGG + chr2_1:78547314-78547333 None:intergenic 25.0%
! CAAAATTCGCTATATTTACA+AGG + chr2_1:78547362-78547381 None:intergenic 25.0%
!! TCTCTAAAAAACTAAATGGA+AGG - chr2_1:78547389-78547408 Msa0227440:intron 25.0%
!!! TATGAGGAGTACTTTTTTAA+AGG + chr2_1:78547507-78547526 None:intergenic 25.0%
! AAATGAGAATTAATGTTGGT+AGG - chr2_1:78547590-78547609 Msa0227440:intron 25.0%
! GTCCAAAAGTTATTAAAAAG+TGG + chr2_1:78547841-78547860 None:intergenic 25.0%
! AACCTAAGCAATAAAAAGAT+AGG - chr2_1:78548198-78548217 Msa0227440:intron 25.0%
!! TTCCTATCTTTTTATTGCTT+AGG + chr2_1:78548203-78548222 None:intergenic 25.0%
! AAGCTTCAAAATCAAACAAT+TGG - chr2_1:78548222-78548241 Msa0227440:intron 25.0%
!! CTTTTGTATCAACCATTTTA+TGG - chr2_1:78548477-78548496 Msa0227440:CDS 25.0%
! ACCATTAATGATCCAAATAA+TGG - chr2_1:78548678-78548697 Msa0227440:CDS 25.0%
! ACCATTATTTGGATCATTAA+TGG + chr2_1:78548682-78548701 None:intergenic 25.0%
! ATTAATGATCCAAATAATGG+TGG - chr2_1:78548681-78548700 Msa0227440:CDS 25.0%
! ATGTTAATGATTCAATGGTA+TGG - chr2_1:78549143-78549162 Msa0227440:five_prime_UTR 25.0%
! TGTTAATGATTCAATGGTAT+GGG - chr2_1:78549144-78549163 Msa0227440:five_prime_UTR 25.0%
!!! ATAACCACTTTTTCATTGTA+TGG + chr2_1:78549183-78549202 None:intergenic 25.0%
! ACAATGAAAAAGTGGTTATT+TGG - chr2_1:78549184-78549203 Msa0227440:five_prime_UTR 25.0%
! CAATGAAAAAGTGGTTATTT+GGG - chr2_1:78549185-78549204 Msa0227440:five_prime_UTR 25.0%
!! AGATTGTGTTTTACTATTTG+AGG + chr2_1:78545131-78545150 None:intergenic 25.0%
! GTAATGAAATTGTGAATAAG+AGG + chr2_1:78545202-78545221 None:intergenic 25.0%
! TATTTGTACTTGTGATTCAA+GGG + chr2_1:78545227-78545246 None:intergenic 25.0%
! ATATTTGTACTTGTGATTCA+AGG + chr2_1:78545228-78545247 None:intergenic 25.0%
! TATCTAATATGCAAATGAAG+AGG - chr2_1:78545315-78545334 Msa0227440:three_prime_UTR 25.0%
!!! ATCAAGTTGAAGCTATAAAA+GGG - chr2_1:78545504-78545523 Msa0227440:CDS 25.0%
! TATAAAAGGGTTCATCAAAA+GGG - chr2_1:78545517-78545536 Msa0227440:CDS 25.0%
! TCAAAAGGGATATATTTAGA+AGG - chr2_1:78545531-78545550 Msa0227440:CDS 25.0%
! CAAAAGGGATATATTTAGAA+GGG - chr2_1:78545532-78545551 Msa0227440:CDS 25.0%
! TATATTTAGAAGGGAAATGA+TGG - chr2_1:78545541-78545560 Msa0227440:CDS 25.0%
! AGAATAGGAATGAATTATCA+AGG - chr2_1:78545569-78545588 Msa0227440:CDS 25.0%
!! TTTGAATTTTCAATGCATTC+AGG - chr2_1:78545638-78545657 Msa0227440:CDS 25.0%
!! GAAATTGGTGAATATTTTGT+TGG - chr2_1:78545671-78545690 Msa0227440:CDS 25.0%
! TTGGTTTAAATGTATGAGAA+AGG - chr2_1:78545757-78545776 Msa0227440:CDS 25.0%
!!! TTTGCTAGAAAATTGTTTTG+TGG - chr2_1:78546070-78546089 Msa0227440:CDS 25.0%
!!! TTGCTAGAAAATTGTTTTGT+GGG - chr2_1:78546071-78546090 Msa0227440:CDS 25.0%
!! TTTTGTTGCAAGTAGATTAT+AGG - chr2_1:78546141-78546160 Msa0227440:CDS 25.0%
!! AGTAGATTATAGGATTGTTT+TGG - chr2_1:78546151-78546170 Msa0227440:CDS 25.0%
!!! TTTTACCTTTTGCTTTTTCA+TGG - chr2_1:78546469-78546488 Msa0227440:intron 25.0%
!! ACAATTAAAGGCTATCTTTT+TGG - chr2_1:78546576-78546595 Msa0227440:intron 25.0%
! AAAAAGAGAAGGTAAATTTG+AGG + chr2_1:78546603-78546622 None:intergenic 25.0%
!! AAATTTACCTTCTCTTTTTG+TGG - chr2_1:78546604-78546623 Msa0227440:intron 25.0%
!! AATTTACCTTCTCTTTTTGT+GGG - chr2_1:78546605-78546624 Msa0227440:intron 25.0%
!! TTTTTATAAATAGGACTGGA+GGG + chr2_1:78546796-78546815 None:intergenic 25.0%
!!! TTTTTTATAAATAGGACTGG+AGG + chr2_1:78546797-78546816 None:intergenic 25.0%
! CATTGCATAAATGATGAATT+TGG - chr2_1:78546835-78546854 Msa0227440:intron 25.0%
! ATTGTAACACATAGTCAAAA+CGG + chr2_1:78547061-78547080 None:intergenic 25.0%
! CCAATTGAAATTGAAATCTT+TGG + chr2_1:78547159-78547178 None:intergenic 25.0%
! CCAAAGATTTCAATTTCAAT+TGG - chr2_1:78547156-78547175 Msa0227440:intron 25.0%
! AGATTTCAATTTCAATTGGT+TGG - chr2_1:78547160-78547179 Msa0227440:intron 25.0%
!!! AATTGGTTGGTTTGTTTATA+AGG - chr2_1:78547173-78547192 Msa0227440:intron 25.0%
!! TCTTAAGTGCACATTAATTT+TGG + chr2_1:78547210-78547229 None:intergenic 25.0%
!! CAAACACATTGATTATTGAT+GGG + chr2_1:78547313-78547332 None:intergenic 25.0%
!! TCAAACACATTGATTATTGA+TGG + chr2_1:78547314-78547333 None:intergenic 25.0%
! CAAAATTCGCTATATTTACA+AGG + chr2_1:78547362-78547381 None:intergenic 25.0%
!! TCTCTAAAAAACTAAATGGA+AGG - chr2_1:78547389-78547408 Msa0227440:intron 25.0%
!!! TATGAGGAGTACTTTTTTAA+AGG + chr2_1:78547507-78547526 None:intergenic 25.0%
! AAATGAGAATTAATGTTGGT+AGG - chr2_1:78547590-78547609 Msa0227440:intron 25.0%
! GTCCAAAAGTTATTAAAAAG+TGG + chr2_1:78547841-78547860 None:intergenic 25.0%
! AACCTAAGCAATAAAAAGAT+AGG - chr2_1:78548198-78548217 Msa0227440:intron 25.0%
!! TTCCTATCTTTTTATTGCTT+AGG + chr2_1:78548203-78548222 None:intergenic 25.0%
! AAGCTTCAAAATCAAACAAT+TGG - chr2_1:78548222-78548241 Msa0227440:intron 25.0%
!! CTTTTGTATCAACCATTTTA+TGG - chr2_1:78548477-78548496 Msa0227440:CDS 25.0%
! ACCATTAATGATCCAAATAA+TGG - chr2_1:78548678-78548697 Msa0227440:CDS 25.0%
! ACCATTATTTGGATCATTAA+TGG + chr2_1:78548682-78548701 None:intergenic 25.0%
! ATTAATGATCCAAATAATGG+TGG - chr2_1:78548681-78548700 Msa0227440:CDS 25.0%
! ATGTTAATGATTCAATGGTA+TGG - chr2_1:78549143-78549162 Msa0227440:five_prime_UTR 25.0%
! TGTTAATGATTCAATGGTAT+GGG - chr2_1:78549144-78549163 Msa0227440:five_prime_UTR 25.0%
!!! ATAACCACTTTTTCATTGTA+TGG + chr2_1:78549183-78549202 None:intergenic 25.0%
! ACAATGAAAAAGTGGTTATT+TGG - chr2_1:78549184-78549203 Msa0227440:five_prime_UTR 25.0%
! CAATGAAAAAGTGGTTATTT+GGG - chr2_1:78549185-78549204 Msa0227440:five_prime_UTR 25.0%
AAAAGAGAGAGAGAAGAAAA+AGG + chr2_1:78545173-78545192 None:intergenic 30.0%
!! GATCAAGTTGAAGCTATAAA+AGG - chr2_1:78545503-78545522 Msa0227440:CDS 30.0%
CTATAAAAGGGTTCATCAAA+AGG - chr2_1:78545516-78545535 Msa0227440:CDS 30.0%
!! GAAATGATGGATCAAAGAAT+AGG - chr2_1:78545554-78545573 Msa0227440:CDS 30.0%
ATAGGAATGAATTATCAAGG+TGG - chr2_1:78545572-78545591 Msa0227440:CDS 30.0%
!!! TATTTTGTTGGTGTTACAGT+TGG - chr2_1:78545683-78545702 Msa0227440:CDS 30.0%
TGACAATCAGTCAAACTATA+AGG + chr2_1:78545980-78545999 None:intergenic 30.0%
AAACAAACCTGACTTCATAA+AGG + chr2_1:78546021-78546040 None:intergenic 30.0%
!! TGCTAGAAAATTGTTTTGTG+GGG - chr2_1:78546072-78546091 Msa0227440:CDS 30.0%
TGTTTCCATGAAAAAGCAAA+AGG + chr2_1:78546477-78546496 None:intergenic 30.0%
! ACAAGTGTTGCTAAATGAAT+AGG - chr2_1:78546494-78546513 Msa0227440:intron 30.0%
! CAAGTGTTGCTAAATGAATA+GGG - chr2_1:78546495-78546514 Msa0227440:intron 30.0%
AGATCACAAATTAAGACAGT+TGG - chr2_1:78546634-78546653 Msa0227440:intron 30.0%
GATCACAAATTAAGACAGTT+GGG - chr2_1:78546635-78546654 Msa0227440:intron 30.0%
ATCACAAATTAAGACAGTTG+GGG - chr2_1:78546636-78546655 Msa0227440:intron 30.0%
GTCTCACATTATACTCATTT+GGG + chr2_1:78546930-78546949 None:intergenic 30.0%
TGTCTCACATTATACTCATT+TGG + chr2_1:78546931-78546950 None:intergenic 30.0%
TAAAAACCAGCCAAAATACT+CGG - chr2_1:78546982-78547001 Msa0227440:intron 30.0%
AAATCTTTGGATATGTCTTG+TGG + chr2_1:78547146-78547165 None:intergenic 30.0%
TATCAGAACTCTAAATACGT+TGG + chr2_1:78547256-78547275 None:intergenic 30.0%
! AACGTATTTAGAGTTCTGAT+AGG - chr2_1:78547255-78547274 Msa0227440:intron 30.0%
TCTCATTTATAACCAATGGT+TGG + chr2_1:78547578-78547597 None:intergenic 30.0%
!! TTGTTTTTCTCACTTCTTAC+TGG + chr2_1:78547926-78547945 None:intergenic 30.0%
AGTAAGAAGTGAGAAAAACA+AGG - chr2_1:78547925-78547944 Msa0227440:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr2_1:78547951-78547970 Msa0227440:intron 30.0%
AATCTTATCTTTGACAGCTA+TGG - chr2_1:78548123-78548142 Msa0227440:intron 30.0%
! TTCCACCAACATTTTCATAT+GGG + chr2_1:78548281-78548300 None:intergenic 30.0%
! ATTCCACCAACATTTTCATA+TGG + chr2_1:78548282-78548301 None:intergenic 30.0%
CAAATGATCAACAAGACAAT+AGG + chr2_1:78548373-78548392 None:intergenic 30.0%
! TCACTCAACAATTTGACTTT+AGG + chr2_1:78548438-78548457 None:intergenic 30.0%
GTAACATTCACACCATAAAA+TGG + chr2_1:78548492-78548511 None:intergenic 30.0%
! TTTTATGGTGTGAATGTTAC+TGG - chr2_1:78548492-78548511 Msa0227440:CDS 30.0%
!!! AATCCAAGACACTTTGTTTT+TGG + chr2_1:78548828-78548847 None:intergenic 30.0%
GGAACACGTAATTCTATTAT+TGG - chr2_1:78548861-78548880 Msa0227440:CDS 30.0%
TTATGCAGCAAAATCATCTT+TGG - chr2_1:78548889-78548908 Msa0227440:CDS 30.0%
TATGCAGCAAAATCATCTTT+GGG - chr2_1:78548890-78548909 Msa0227440:CDS 30.0%
CTCTGATGTTAATGATTCAA+TGG - chr2_1:78549138-78549157 Msa0227440:five_prime_UTR 30.0%
AAAAGAGAGAGAGAAGAAAA+AGG + chr2_1:78545173-78545192 None:intergenic 30.0%
!! GATCAAGTTGAAGCTATAAA+AGG - chr2_1:78545503-78545522 Msa0227440:CDS 30.0%
CTATAAAAGGGTTCATCAAA+AGG - chr2_1:78545516-78545535 Msa0227440:CDS 30.0%
!! GAAATGATGGATCAAAGAAT+AGG - chr2_1:78545554-78545573 Msa0227440:CDS 30.0%
ATAGGAATGAATTATCAAGG+TGG - chr2_1:78545572-78545591 Msa0227440:CDS 30.0%
!!! TATTTTGTTGGTGTTACAGT+TGG - chr2_1:78545683-78545702 Msa0227440:CDS 30.0%
TGACAATCAGTCAAACTATA+AGG + chr2_1:78545980-78545999 None:intergenic 30.0%
AAACAAACCTGACTTCATAA+AGG + chr2_1:78546021-78546040 None:intergenic 30.0%
!! TGCTAGAAAATTGTTTTGTG+GGG - chr2_1:78546072-78546091 Msa0227440:CDS 30.0%
TGTTTCCATGAAAAAGCAAA+AGG + chr2_1:78546477-78546496 None:intergenic 30.0%
! ACAAGTGTTGCTAAATGAAT+AGG - chr2_1:78546494-78546513 Msa0227440:intron 30.0%
! CAAGTGTTGCTAAATGAATA+GGG - chr2_1:78546495-78546514 Msa0227440:intron 30.0%
AGATCACAAATTAAGACAGT+TGG - chr2_1:78546634-78546653 Msa0227440:intron 30.0%
GATCACAAATTAAGACAGTT+GGG - chr2_1:78546635-78546654 Msa0227440:intron 30.0%
ATCACAAATTAAGACAGTTG+GGG - chr2_1:78546636-78546655 Msa0227440:intron 30.0%
GTCTCACATTATACTCATTT+GGG + chr2_1:78546930-78546949 None:intergenic 30.0%
TGTCTCACATTATACTCATT+TGG + chr2_1:78546931-78546950 None:intergenic 30.0%
TAAAAACCAGCCAAAATACT+CGG - chr2_1:78546982-78547001 Msa0227440:intron 30.0%
AAATCTTTGGATATGTCTTG+TGG + chr2_1:78547146-78547165 None:intergenic 30.0%
TATCAGAACTCTAAATACGT+TGG + chr2_1:78547256-78547275 None:intergenic 30.0%
! AACGTATTTAGAGTTCTGAT+AGG - chr2_1:78547255-78547274 Msa0227440:intron 30.0%
TCTCATTTATAACCAATGGT+TGG + chr2_1:78547578-78547597 None:intergenic 30.0%
!! TTGTTTTTCTCACTTCTTAC+TGG + chr2_1:78547926-78547945 None:intergenic 30.0%
AGTAAGAAGTGAGAAAAACA+AGG - chr2_1:78547925-78547944 Msa0227440:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr2_1:78547951-78547970 Msa0227440:intron 30.0%
AATCTTATCTTTGACAGCTA+TGG - chr2_1:78548123-78548142 Msa0227440:intron 30.0%
! TTCCACCAACATTTTCATAT+GGG + chr2_1:78548281-78548300 None:intergenic 30.0%
! ATTCCACCAACATTTTCATA+TGG + chr2_1:78548282-78548301 None:intergenic 30.0%
CAAATGATCAACAAGACAAT+AGG + chr2_1:78548373-78548392 None:intergenic 30.0%
! TCACTCAACAATTTGACTTT+AGG + chr2_1:78548438-78548457 None:intergenic 30.0%
GTAACATTCACACCATAAAA+TGG + chr2_1:78548492-78548511 None:intergenic 30.0%
! TTTTATGGTGTGAATGTTAC+TGG - chr2_1:78548492-78548511 Msa0227440:CDS 30.0%
!!! AATCCAAGACACTTTGTTTT+TGG + chr2_1:78548828-78548847 None:intergenic 30.0%
GGAACACGTAATTCTATTAT+TGG - chr2_1:78548861-78548880 Msa0227440:CDS 30.0%
TTATGCAGCAAAATCATCTT+TGG - chr2_1:78548889-78548908 Msa0227440:CDS 30.0%
TATGCAGCAAAATCATCTTT+GGG - chr2_1:78548890-78548909 Msa0227440:CDS 30.0%
CTCTGATGTTAATGATTCAA+TGG - chr2_1:78549138-78549157 Msa0227440:five_prime_UTR 30.0%
TGAAGAGGAAATTGATGCAA+TGG - chr2_1:78545330-78545349 Msa0227440:exon 35.0%
! TCATGAAGAGCATGAGAATA+TGG - chr2_1:78545424-78545443 Msa0227440:CDS 35.0%
! TGAGTCTAGAACTTATCCAT+AGG - chr2_1:78545453-78545472 Msa0227440:CDS 35.0%
GAAATCTTGAATCATGCCTA+TGG + chr2_1:78545472-78545491 None:intergenic 35.0%
AGGCATGATTCAAGATTTCT+TGG - chr2_1:78545473-78545492 Msa0227440:CDS 35.0%
GGCATGATTCAAGATTTCTT+GGG - chr2_1:78545474-78545493 Msa0227440:CDS 35.0%
GCATGATTCAAGATTTCTTG+GGG - chr2_1:78545475-78545494 Msa0227440:CDS 35.0%
ATGAATTATCAAGGTGGTCA+TGG - chr2_1:78545578-78545597 Msa0227440:CDS 35.0%
TCAGGAAGAGATGTTGAAAT+TGG - chr2_1:78545656-78545675 Msa0227440:CDS 35.0%
! ATAAGCCAAAACTTTTGACC+TGG + chr2_1:78545713-78545732 None:intergenic 35.0%
!!! TTTTGGCTTATTGCTGATAC+AGG - chr2_1:78545722-78545741 Msa0227440:CDS 35.0%
ATACAGGAAGTGAGTTAACT+TGG - chr2_1:78545738-78545757 Msa0227440:CDS 35.0%
TCATACAGCAAGAAGAAGAA+GGG - chr2_1:78545856-78545875 Msa0227440:CDS 35.0%
GGACAAAACATATCATCACA+AGG + chr2_1:78545896-78545915 None:intergenic 35.0%
TGAAATGTATGAGAACGATG+AGG + chr2_1:78545917-78545936 None:intergenic 35.0%
!! AAAATTGTTTTGTGGGGTGT+TGG - chr2_1:78546078-78546097 Msa0227440:CDS 35.0%
! TGTTTTACAAATGTGTCACG+TGG + chr2_1:78546267-78546286 None:intergenic 35.0%
ATGAGTATAATGTGAGACAG+AGG - chr2_1:78546932-78546951 Msa0227440:intron 35.0%
ACAGAGGAAGTTATTAGTAG+TGG - chr2_1:78546948-78546967 Msa0227440:intron 35.0%
! TAGAGTTCTGATAGGAGTAA+TGG - chr2_1:78547263-78547282 Msa0227440:intron 35.0%
! TGTGGTAATGTATGTGTATG+AGG + chr2_1:78547523-78547542 None:intergenic 35.0%
TGCCTTGAATGAAGAAATGT+GGG + chr2_1:78547629-78547648 None:intergenic 35.0%
ATGCCTTGAATGAAGAAATG+TGG + chr2_1:78547630-78547649 None:intergenic 35.0%
CACAGATTTAACAAAGAGAC+TGG + chr2_1:78547662-78547681 None:intergenic 35.0%
TATAGTTGTCAACGTGAACA+GGG + chr2_1:78547708-78547727 None:intergenic 35.0%
ATATAGTTGTCAACGTGAAC+AGG + chr2_1:78547709-78547728 None:intergenic 35.0%
GAACATTAATCATAGAGCAC+TGG + chr2_1:78548078-78548097 None:intergenic 35.0%
CAATCAGTGATAAATAGTCC+AGG - chr2_1:78548252-78548271 Msa0227440:intron 35.0%
! ACATTTTCATATGGGAAACC+TGG + chr2_1:78548273-78548292 None:intergenic 35.0%
GGTTTCCCATATGAAAATGT+TGG - chr2_1:78548273-78548292 Msa0227440:intron 35.0%
TTCCCATATGAAAATGTTGG+TGG - chr2_1:78548276-78548295 Msa0227440:intron 35.0%
CAGCATTGTCAACAAATGAA+TGG + chr2_1:78548326-78548345 None:intergenic 35.0%
! CATTCATTTGTTGACAATGC+TGG - chr2_1:78548324-78548343 Msa0227440:CDS 35.0%
! GACAATGCTGGTCTAAAATT+TGG - chr2_1:78548336-78548355 Msa0227440:CDS 35.0%
! GGTAGCTTGAAACATTTTTG+TGG + chr2_1:78548398-78548417 None:intergenic 35.0%
GTTTCAAGCTACCTAACATT+TGG - chr2_1:78548405-78548424 Msa0227440:CDS 35.0%
AATGCTGAAAATACCACCAA+AGG - chr2_1:78548533-78548552 Msa0227440:CDS 35.0%
TGAAAATACCACCAAAGGTT+TGG - chr2_1:78548538-78548557 Msa0227440:CDS 35.0%
GAAAATACCACCAAAGGTTT+GGG - chr2_1:78548539-78548558 Msa0227440:CDS 35.0%
TTCAAGAACAAGTGCAGTTA+AGG + chr2_1:78548607-78548626 None:intergenic 35.0%
!! TTTTTCAATGCCTCTACAAC+AGG + chr2_1:78548639-78548658 None:intergenic 35.0%
TGATCCAAATAATGGTGGTT+TGG - chr2_1:78548686-78548705 Msa0227440:CDS 35.0%
ACTTCCAAACCACCATTATT+TGG + chr2_1:78548693-78548712 None:intergenic 35.0%
!!! GAAGTTTGTTTTGATGCAGA+AGG - chr2_1:78548708-78548727 Msa0227440:CDS 35.0%
CCAAAATGAAACACTAACCT+AGG + chr2_1:78548753-78548772 None:intergenic 35.0%
! CCTAGGTTAGTGTTTCATTT+TGG - chr2_1:78548750-78548769 Msa0227440:CDS 35.0%
! AGGTTAGTGTTTCATTTTGG+TGG - chr2_1:78548753-78548772 Msa0227440:CDS 35.0%
!! TTAGTGTTTCATTTTGGTGG+AGG - chr2_1:78548756-78548775 Msa0227440:CDS 35.0%
TCAATGATGTAACTCTTCAC+TGG + chr2_1:78548798-78548817 None:intergenic 35.0%
! CTTGGATTTTTGCCAGTAAA+TGG - chr2_1:78548840-78548859 Msa0227440:CDS 35.0%
GAATTACGTGTTCCATTTAC+TGG + chr2_1:78548855-78548874 None:intergenic 35.0%
GCATCCATACAATGAAAAAG+TGG - chr2_1:78549176-78549195 Msa0227440:five_prime_UTR 35.0%
TGAAGAGGAAATTGATGCAA+TGG - chr2_1:78545330-78545349 Msa0227440:exon 35.0%
! TCATGAAGAGCATGAGAATA+TGG - chr2_1:78545424-78545443 Msa0227440:CDS 35.0%
! TGAGTCTAGAACTTATCCAT+AGG - chr2_1:78545453-78545472 Msa0227440:CDS 35.0%
GAAATCTTGAATCATGCCTA+TGG + chr2_1:78545472-78545491 None:intergenic 35.0%
AGGCATGATTCAAGATTTCT+TGG - chr2_1:78545473-78545492 Msa0227440:CDS 35.0%
GGCATGATTCAAGATTTCTT+GGG - chr2_1:78545474-78545493 Msa0227440:CDS 35.0%
GCATGATTCAAGATTTCTTG+GGG - chr2_1:78545475-78545494 Msa0227440:CDS 35.0%
ATGAATTATCAAGGTGGTCA+TGG - chr2_1:78545578-78545597 Msa0227440:CDS 35.0%
TCAGGAAGAGATGTTGAAAT+TGG - chr2_1:78545656-78545675 Msa0227440:CDS 35.0%
! ATAAGCCAAAACTTTTGACC+TGG + chr2_1:78545713-78545732 None:intergenic 35.0%
!!! TTTTGGCTTATTGCTGATAC+AGG - chr2_1:78545722-78545741 Msa0227440:CDS 35.0%
ATACAGGAAGTGAGTTAACT+TGG - chr2_1:78545738-78545757 Msa0227440:CDS 35.0%
TCATACAGCAAGAAGAAGAA+GGG - chr2_1:78545856-78545875 Msa0227440:CDS 35.0%
GGACAAAACATATCATCACA+AGG + chr2_1:78545896-78545915 None:intergenic 35.0%
TGAAATGTATGAGAACGATG+AGG + chr2_1:78545917-78545936 None:intergenic 35.0%
!! AAAATTGTTTTGTGGGGTGT+TGG - chr2_1:78546078-78546097 Msa0227440:CDS 35.0%
! TGTTTTACAAATGTGTCACG+TGG + chr2_1:78546267-78546286 None:intergenic 35.0%
ATGAGTATAATGTGAGACAG+AGG - chr2_1:78546932-78546951 Msa0227440:intron 35.0%
ACAGAGGAAGTTATTAGTAG+TGG - chr2_1:78546948-78546967 Msa0227440:intron 35.0%
! TAGAGTTCTGATAGGAGTAA+TGG - chr2_1:78547263-78547282 Msa0227440:intron 35.0%
! TGTGGTAATGTATGTGTATG+AGG + chr2_1:78547523-78547542 None:intergenic 35.0%
TGCCTTGAATGAAGAAATGT+GGG + chr2_1:78547629-78547648 None:intergenic 35.0%
ATGCCTTGAATGAAGAAATG+TGG + chr2_1:78547630-78547649 None:intergenic 35.0%
CACAGATTTAACAAAGAGAC+TGG + chr2_1:78547662-78547681 None:intergenic 35.0%
TATAGTTGTCAACGTGAACA+GGG + chr2_1:78547708-78547727 None:intergenic 35.0%
ATATAGTTGTCAACGTGAAC+AGG + chr2_1:78547709-78547728 None:intergenic 35.0%
GAACATTAATCATAGAGCAC+TGG + chr2_1:78548078-78548097 None:intergenic 35.0%
CAATCAGTGATAAATAGTCC+AGG - chr2_1:78548252-78548271 Msa0227440:intron 35.0%
! ACATTTTCATATGGGAAACC+TGG + chr2_1:78548273-78548292 None:intergenic 35.0%
GGTTTCCCATATGAAAATGT+TGG - chr2_1:78548273-78548292 Msa0227440:intron 35.0%
TTCCCATATGAAAATGTTGG+TGG - chr2_1:78548276-78548295 Msa0227440:intron 35.0%
CAGCATTGTCAACAAATGAA+TGG + chr2_1:78548326-78548345 None:intergenic 35.0%
! CATTCATTTGTTGACAATGC+TGG - chr2_1:78548324-78548343 Msa0227440:CDS 35.0%
! GACAATGCTGGTCTAAAATT+TGG - chr2_1:78548336-78548355 Msa0227440:CDS 35.0%
! GGTAGCTTGAAACATTTTTG+TGG + chr2_1:78548398-78548417 None:intergenic 35.0%
GTTTCAAGCTACCTAACATT+TGG - chr2_1:78548405-78548424 Msa0227440:CDS 35.0%
AATGCTGAAAATACCACCAA+AGG - chr2_1:78548533-78548552 Msa0227440:CDS 35.0%
TGAAAATACCACCAAAGGTT+TGG - chr2_1:78548538-78548557 Msa0227440:CDS 35.0%
GAAAATACCACCAAAGGTTT+GGG - chr2_1:78548539-78548558 Msa0227440:CDS 35.0%
TTCAAGAACAAGTGCAGTTA+AGG + chr2_1:78548607-78548626 None:intergenic 35.0%
!! TTTTTCAATGCCTCTACAAC+AGG + chr2_1:78548639-78548658 None:intergenic 35.0%
TGATCCAAATAATGGTGGTT+TGG - chr2_1:78548686-78548705 Msa0227440:CDS 35.0%
ACTTCCAAACCACCATTATT+TGG + chr2_1:78548693-78548712 None:intergenic 35.0%
!!! GAAGTTTGTTTTGATGCAGA+AGG - chr2_1:78548708-78548727 Msa0227440:CDS 35.0%
CCAAAATGAAACACTAACCT+AGG + chr2_1:78548753-78548772 None:intergenic 35.0%
! CCTAGGTTAGTGTTTCATTT+TGG - chr2_1:78548750-78548769 Msa0227440:CDS 35.0%
! AGGTTAGTGTTTCATTTTGG+TGG - chr2_1:78548753-78548772 Msa0227440:CDS 35.0%
!! TTAGTGTTTCATTTTGGTGG+AGG - chr2_1:78548756-78548775 Msa0227440:CDS 35.0%
TCAATGATGTAACTCTTCAC+TGG + chr2_1:78548798-78548817 None:intergenic 35.0%
! CTTGGATTTTTGCCAGTAAA+TGG - chr2_1:78548840-78548859 Msa0227440:CDS 35.0%
GAATTACGTGTTCCATTTAC+TGG + chr2_1:78548855-78548874 None:intergenic 35.0%
GCATCCATACAATGAAAAAG+TGG - chr2_1:78549176-78549195 Msa0227440:five_prime_UTR 35.0%
! TTACTATTTGAGGTGTGTCG+AGG + chr2_1:78545121-78545140 None:intergenic 40.0%
TGTTCATAGCATCAACAACG+AGG - chr2_1:78545397-78545416 Msa0227440:CDS 40.0%
! GAACACCAGGTCAAAAGTTT+TGG - chr2_1:78545705-78545724 Msa0227440:CDS 40.0%
CTCATACAGCAAGAAGAAGA+AGG - chr2_1:78545855-78545874 Msa0227440:CDS 40.0%
! TCATAAAGGCATGGATCAGA+AGG + chr2_1:78546007-78546026 None:intergenic 40.0%
ATCCATGCCTTTATGAAGTC+AGG - chr2_1:78546011-78546030 Msa0227440:CDS 40.0%
AACCTGACTTCATAAAGGCA+TGG + chr2_1:78546016-78546035 None:intergenic 40.0%
TTACAAATGTGTCACGTGGA+TGG + chr2_1:78546263-78546282 None:intergenic 40.0%
! ACCTTCTCTTTTTGTGGGAA+AGG - chr2_1:78546610-78546629 Msa0227440:intron 40.0%
! CCTTCTCTTTTTGTGGGAAA+GGG - chr2_1:78546611-78546630 Msa0227440:intron 40.0%
ACAAATTAAGACAGTTGGGG+AGG - chr2_1:78546639-78546658 Msa0227440:intron 40.0%
! GAGACATGTTCCGAGTATTT+TGG + chr2_1:78546995-78547014 None:intergenic 40.0%
CAAATGTCTCATGAGCATCA+AGG + chr2_1:78547475-78547494 None:intergenic 40.0%
CTTGATGCTCATGAGACATT+TGG - chr2_1:78547473-78547492 Msa0227440:intron 40.0%
CTCATGAGACATTTGGTAAG+AGG - chr2_1:78547480-78547499 Msa0227440:intron 40.0%
TATAACCAATGGTTGGATGC+TGG + chr2_1:78547571-78547590 None:intergenic 40.0%
GTCCCACATTTCTTCATTCA+AGG - chr2_1:78547624-78547643 Msa0227440:intron 40.0%
TTTCTTCATTCAAGGCATGC+AGG - chr2_1:78547632-78547651 Msa0227440:intron 40.0%
TAAAAGGTTGGGCTAATTGC+AGG + chr2_1:78547685-78547704 None:intergenic 40.0%
ATCTTTGACAGCTATGGTAG+TGG - chr2_1:78548129-78548148 Msa0227440:intron 40.0%
TAGTGGAATATCATCAGCTG+TGG - chr2_1:78548146-78548165 Msa0227440:intron 40.0%
AGTGGAATATCATCAGCTGT+GGG - chr2_1:78548147-78548166 Msa0227440:intron 40.0%
!! GTTGGTGGAATATTAGCCTT+AGG - chr2_1:78548291-78548310 Msa0227440:intron 40.0%
! TGAATGGTGTCTAAAGCCTA+AGG + chr2_1:78548310-78548329 None:intergenic 40.0%
TAGGAGTTGCTCCAAATGTT+AGG + chr2_1:78548419-78548438 None:intergenic 40.0%
TTTCAGCATTTGATCGTCGA+CGG + chr2_1:78548523-78548542 None:intergenic 40.0%
TCAAAATCCCAAACCTTTGG+TGG + chr2_1:78548549-78548568 None:intergenic 40.0%
GCTTCAAAATCCCAAACCTT+TGG + chr2_1:78548552-78548571 None:intergenic 40.0%
!!! AAGGTTTGGGATTTTGAAGC+TGG - chr2_1:78548552-78548571 Msa0227440:CDS 40.0%
AGCCTATTATCCTGTTGTAG+AGG - chr2_1:78548626-78548645 Msa0227440:CDS 40.0%
TGCCTCTACAACAGGATAAT+AGG + chr2_1:78548631-78548650 None:intergenic 40.0%
!! TTCATTTTGGTGGAGGAGTA+AGG - chr2_1:78548763-78548782 Msa0227440:CDS 40.0%
ATGATGTAACTCTTCACTGG+TGG + chr2_1:78548795-78548814 None:intergenic 40.0%
! GCACCAAAAACAAAGTGTCT+TGG - chr2_1:78548822-78548841 Msa0227440:CDS 40.0%
AGAACAACTCTCTAGTTGCA+TGG + chr2_1:78548956-78548975 None:intergenic 40.0%
! TTACTATTTGAGGTGTGTCG+AGG + chr2_1:78545121-78545140 None:intergenic 40.0%
TGTTCATAGCATCAACAACG+AGG - chr2_1:78545397-78545416 Msa0227440:CDS 40.0%
! GAACACCAGGTCAAAAGTTT+TGG - chr2_1:78545705-78545724 Msa0227440:CDS 40.0%
CTCATACAGCAAGAAGAAGA+AGG - chr2_1:78545855-78545874 Msa0227440:CDS 40.0%
! TCATAAAGGCATGGATCAGA+AGG + chr2_1:78546007-78546026 None:intergenic 40.0%
ATCCATGCCTTTATGAAGTC+AGG - chr2_1:78546011-78546030 Msa0227440:CDS 40.0%
AACCTGACTTCATAAAGGCA+TGG + chr2_1:78546016-78546035 None:intergenic 40.0%
TTACAAATGTGTCACGTGGA+TGG + chr2_1:78546263-78546282 None:intergenic 40.0%
! ACCTTCTCTTTTTGTGGGAA+AGG - chr2_1:78546610-78546629 Msa0227440:intron 40.0%
! CCTTCTCTTTTTGTGGGAAA+GGG - chr2_1:78546611-78546630 Msa0227440:intron 40.0%
ACAAATTAAGACAGTTGGGG+AGG - chr2_1:78546639-78546658 Msa0227440:intron 40.0%
! GAGACATGTTCCGAGTATTT+TGG + chr2_1:78546995-78547014 None:intergenic 40.0%
CAAATGTCTCATGAGCATCA+AGG + chr2_1:78547475-78547494 None:intergenic 40.0%
CTTGATGCTCATGAGACATT+TGG - chr2_1:78547473-78547492 Msa0227440:intron 40.0%
CTCATGAGACATTTGGTAAG+AGG - chr2_1:78547480-78547499 Msa0227440:intron 40.0%
TATAACCAATGGTTGGATGC+TGG + chr2_1:78547571-78547590 None:intergenic 40.0%
GTCCCACATTTCTTCATTCA+AGG - chr2_1:78547624-78547643 Msa0227440:intron 40.0%
TTTCTTCATTCAAGGCATGC+AGG - chr2_1:78547632-78547651 Msa0227440:intron 40.0%
TAAAAGGTTGGGCTAATTGC+AGG + chr2_1:78547685-78547704 None:intergenic 40.0%
ATCTTTGACAGCTATGGTAG+TGG - chr2_1:78548129-78548148 Msa0227440:intron 40.0%
TAGTGGAATATCATCAGCTG+TGG - chr2_1:78548146-78548165 Msa0227440:intron 40.0%
AGTGGAATATCATCAGCTGT+GGG - chr2_1:78548147-78548166 Msa0227440:intron 40.0%
!! GTTGGTGGAATATTAGCCTT+AGG - chr2_1:78548291-78548310 Msa0227440:intron 40.0%
! TGAATGGTGTCTAAAGCCTA+AGG + chr2_1:78548310-78548329 None:intergenic 40.0%
TAGGAGTTGCTCCAAATGTT+AGG + chr2_1:78548419-78548438 None:intergenic 40.0%
TTTCAGCATTTGATCGTCGA+CGG + chr2_1:78548523-78548542 None:intergenic 40.0%
TCAAAATCCCAAACCTTTGG+TGG + chr2_1:78548549-78548568 None:intergenic 40.0%
GCTTCAAAATCCCAAACCTT+TGG + chr2_1:78548552-78548571 None:intergenic 40.0%
!!! AAGGTTTGGGATTTTGAAGC+TGG - chr2_1:78548552-78548571 Msa0227440:CDS 40.0%
AGCCTATTATCCTGTTGTAG+AGG - chr2_1:78548626-78548645 Msa0227440:CDS 40.0%
TGCCTCTACAACAGGATAAT+AGG + chr2_1:78548631-78548650 None:intergenic 40.0%
!! TTCATTTTGGTGGAGGAGTA+AGG - chr2_1:78548763-78548782 Msa0227440:CDS 40.0%
ATGATGTAACTCTTCACTGG+TGG + chr2_1:78548795-78548814 None:intergenic 40.0%
! GCACCAAAAACAAAGTGTCT+TGG - chr2_1:78548822-78548841 Msa0227440:CDS 40.0%
AGAACAACTCTCTAGTTGCA+TGG + chr2_1:78548956-78548975 None:intergenic 40.0%
AATGTGTCACGTGGATGGAA+AGG + chr2_1:78546258-78546277 None:intergenic 45.0%
CCCTTTCCCACAAAAAGAGA+AGG + chr2_1:78546614-78546633 None:intergenic 45.0%
!!! CATGTTCCGAGTATTTTGGC+TGG + chr2_1:78546991-78547010 None:intergenic 45.0%
GAGCAGACCATTGTCTAGTA+CGG - chr2_1:78547230-78547249 Msa0227440:intron 45.0%
!!! GGTTGCTGGGTCATTTTTTG+TGG + chr2_1:78547541-78547560 None:intergenic 45.0%
TGCTGGAAAGAATGGTTGCT+GGG + chr2_1:78547554-78547573 None:intergenic 45.0%
ATGCTGGAAAGAATGGTTGC+TGG + chr2_1:78547555-78547574 None:intergenic 45.0%
TGGTTGGATGCTGGAAAGAA+TGG + chr2_1:78547562-78547581 None:intergenic 45.0%
TCTTTCCAGCATCCAACCAT+TGG - chr2_1:78547563-78547582 Msa0227440:intron 45.0%
CGTGAACAGGGTAAAAGGTT+GGG + chr2_1:78547696-78547715 None:intergenic 45.0%
ACGTGAACAGGGTAAAAGGT+TGG + chr2_1:78547697-78547716 None:intergenic 45.0%
GTCAACGTGAACAGGGTAAA+AGG + chr2_1:78547701-78547720 None:intergenic 45.0%
TCATCAGCTGTGGGATTCTA+TGG - chr2_1:78548156-78548175 Msa0227440:intron 45.0%
!!! TGGGATTTTGAAGCTGGTGA+AGG - chr2_1:78548558-78548577 Msa0227440:CDS 45.0%
!!! GGGATTTTGAAGCTGGTGAA+GGG - chr2_1:78548559-78548578 Msa0227440:CDS 45.0%
!! GAAGGGATGATCATTGACTC+AGG - chr2_1:78548576-78548595 Msa0227440:CDS 45.0%
!! TTGATGAGAGTATTGCGCCT+AGG - chr2_1:78548733-78548752 Msa0227440:CDS 45.0%
ACTCTCTAGTTGCATGGAGA+AGG + chr2_1:78548950-78548969 None:intergenic 45.0%
AATGTGTCACGTGGATGGAA+AGG + chr2_1:78546258-78546277 None:intergenic 45.0%
CCCTTTCCCACAAAAAGAGA+AGG + chr2_1:78546614-78546633 None:intergenic 45.0%
!!! CATGTTCCGAGTATTTTGGC+TGG + chr2_1:78546991-78547010 None:intergenic 45.0%
GAGCAGACCATTGTCTAGTA+CGG - chr2_1:78547230-78547249 Msa0227440:intron 45.0%
!!! GGTTGCTGGGTCATTTTTTG+TGG + chr2_1:78547541-78547560 None:intergenic 45.0%
TGCTGGAAAGAATGGTTGCT+GGG + chr2_1:78547554-78547573 None:intergenic 45.0%
ATGCTGGAAAGAATGGTTGC+TGG + chr2_1:78547555-78547574 None:intergenic 45.0%
TGGTTGGATGCTGGAAAGAA+TGG + chr2_1:78547562-78547581 None:intergenic 45.0%
TCTTTCCAGCATCCAACCAT+TGG - chr2_1:78547563-78547582 Msa0227440:intron 45.0%
CGTGAACAGGGTAAAAGGTT+GGG + chr2_1:78547696-78547715 None:intergenic 45.0%
ACGTGAACAGGGTAAAAGGT+TGG + chr2_1:78547697-78547716 None:intergenic 45.0%
GTCAACGTGAACAGGGTAAA+AGG + chr2_1:78547701-78547720 None:intergenic 45.0%
TCATCAGCTGTGGGATTCTA+TGG - chr2_1:78548156-78548175 Msa0227440:intron 45.0%
!!! TGGGATTTTGAAGCTGGTGA+AGG - chr2_1:78548558-78548577 Msa0227440:CDS 45.0%
!!! GGGATTTTGAAGCTGGTGAA+GGG - chr2_1:78548559-78548578 Msa0227440:CDS 45.0%
!! GAAGGGATGATCATTGACTC+AGG - chr2_1:78548576-78548595 Msa0227440:CDS 45.0%
!! TTGATGAGAGTATTGCGCCT+AGG - chr2_1:78548733-78548752 Msa0227440:CDS 45.0%
ACTCTCTAGTTGCATGGAGA+AGG + chr2_1:78548950-78548969 None:intergenic 45.0%
!!! TAATTTTTTTATTTATTGTT+TGG + chr2_1:78547100-78547119 None:intergenic 5.0%
!!! TAATTTTTTTATTTATTGTT+TGG + chr2_1:78547100-78547119 None:intergenic 5.0%
! GGTGTTACAGTTGGAACACC+AGG - chr2_1:78545692-78545711 Msa0227440:CDS 50.0%
TGTCACGTGGATGGAAAGGA+TGG + chr2_1:78546254-78546273 None:intergenic 50.0%
! CTGGAGGGAGTAAGTGGTTT+TGG + chr2_1:78546781-78546800 None:intergenic 50.0%
ATAGGACTGGAGGGAGTAAG+TGG + chr2_1:78546787-78546806 None:intergenic 50.0%
ACGTTGGCCGTACTAGACAA+TGG + chr2_1:78547240-78547259 None:intergenic 50.0%
! GGTGTTACAGTTGGAACACC+AGG - chr2_1:78545692-78545711 Msa0227440:CDS 50.0%
TGTCACGTGGATGGAAAGGA+TGG + chr2_1:78546254-78546273 None:intergenic 50.0%
! CTGGAGGGAGTAAGTGGTTT+TGG + chr2_1:78546781-78546800 None:intergenic 50.0%
ATAGGACTGGAGGGAGTAAG+TGG + chr2_1:78546787-78546806 None:intergenic 50.0%
ACGTTGGCCGTACTAGACAA+TGG + chr2_1:78547240-78547259 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 78545118 78549208 78545118 ID=Msa0227440;Name=Msa0227440
chr2_1 mRNA 78545118 78549208 78545118 ID=Msa0227440-mRNA-1;Parent=Msa0227440;Name=Msa0227440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=205|1|1|1|1|1|2|225|517
chr2_1 exon 78545118 78546186 78545118 ID=Msa0227440-mRNA-1:exon:23903;Parent=Msa0227440-mRNA-1
chr2_1 exon 78548294 78549208 78548294 ID=Msa0227440-mRNA-1:exon:23902;Parent=Msa0227440-mRNA-1
chr2_1 five_prime_UTR 78549004 78549208 78549004 ID=Msa0227440-mRNA-1:five_prime_utr;Parent=Msa0227440-mRNA-1
chr2_1 CDS 78548294 78549003 78548294 ID=Msa0227440-mRNA-1:cds;Parent=Msa0227440-mRNA-1
chr2_1 CDS 78545343 78546186 78545343 ID=Msa0227440-mRNA-1:cds;Parent=Msa0227440-mRNA-1
chr2_1 three_prime_UTR 78545118 78545342 78545118 ID=Msa0227440-mRNA-1:three_prime_utr;Parent=Msa0227440-mRNA-1
Gene Sequence

>Msa0227440

ATGCAAATGAAGAGGAAATTGATGCAATGGAGTACACAAATTCTCATGACCCTTTTATTGATTCAAATCATTCATGTTCATAGCATCAACAACGAGGAAGATCATGAAGAGCATGAGAATATGGAGAAGATGAGTCTAGAACTTATCCATAGGCATGATTCAAGATTTCTTGGGGAGATAGATCAAGTTGAAGCTATAAAAGGGTTCATCAAAAGGGATATATTTAGAAGGGAAATGATGGATCAAAGAATAGGAATGAATTATCAAGGTGGTCATGGTAATAATAGAAGAAAAGACATTGAAATGAAACAAGATTTTGAATTTTCAATGCATTCAGGAAGAGATGTTGAAATTGGTGAATATTTTGTTGGTGTTACAGTTGGAACACCAGGTCAAAAGTTTTGGCTTATTGCTGATACAGGAAGTGAGTTAACTTGGTTTAAATGTATGAGAAAGGTTCATCATAATCACCAACATAAACATAAACATAATAAACATAAAGGAGGGTCAAAGACAAAATCAAGAACAAAATCTCATACAGCAAGAAGAAGAAGGGCTCATTCTCATAATCCTTGTGATGATATGTTTTGTCCTCATCGTTCTCATACATTTCATCAAATTTCTTGTTCATCTAAAATGTGCATTGCTGAACTTCCTTATAGTTTGACTGATTGTCAAAGTCCTTCTGATCCATGCCTTTATGAAGTCAGCTATGGTAGTGGAATATCATCAGCTGTGGGATTCTATGGCACTGACACAATATCAATAAACCTAAGCAATAAAAAGATAGGAAAGCTTCAAAATCAAACAATTGGATGCACACAATCAGTGATAAATAGTCCAGGTTTCCCATATGAAAATGTTGGTGGAATATTAGCCTTAGGCTTTAGACACCATTCATTTGTTGACAATGCTGGTCTAAAATTTGGTTCAAAATTTTCCTATTGTCTTGTTGATCATTTGAGCCACAAAAATGTTTCAAGCTACCTAACATTTGGAGCAACTCCTAAAGTCAAATTGTTGAGTGAAATCAAAAGAACAGATATGCTTTTGTATCAACCATTTTATGGTGTGAATGTTACTGGCATCTCCGTCGACGATCAAATGCTGAAAATACCACCAAAGGTTTGGGATTTTGAAGCTGGTGAAGGGATGATCATTGACTCAGGTTTTACCTTAACTGCACTTGTTCTTGAAGCCTATTATCCTGTTGTAGAGGCATTGAAAAAATCTTTGCACAATGTGAAAACCATTAATGATCCAAATAATGGTGGTTTGGAAGTTTGTTTTGATGCAGAAGGTTTTGATGAGAGTATTGCGCCTAGGTTAGTGTTTCATTTTGGTGGAGGAGTAAGGTTTGAACCACCAGTGAAGAGTTACATCATTGATGCTGCACCAAAAACAAAGTGTCTTGGATTTTTGCCAGTAAATGGAACACGTAATTCTATTATTGGTAATATTATGCAGCAAAATCATCTTTGGGAATTTGATATTTATAAAACACTATTGGTTTTGCTCCTTCTCCATGCAACTAGAGAGTTGTTCTTGTATTGA
Protein sequence

>Msa0227440

MQMKRKLMQWSTQILMTLLLIQIIHVHSINNEEDHEEHENMEKMSLELIHRHDSRFLGEIDQVEAIKGFIKRDIFRREMMDQRIGMNYQGGHGNNRRKDIEMKQDFEFSMHSGRDVEIGEYFVGVTVGTPGQKFWLIADTGSELTWFKCMRKVHHNHQHKHKHNKHKGGSKTKSRTKSHTARRRRAHSHNPCDDMFCPHRSHTFHQISCSSKMCIAELPYSLTDCQSPSDPCLYEVSYGSGISSAVGFYGTDTISINLSNKKIGKLQNQTIGCTQSVINSPGFPYENVGGILALGFRHHSFVDNAGLKFGSKFSYCLVDHLSHKNVSSYLTFGATPKVKLLSEIKRTDMLLYQPFYGVNVTGISVDDQMLKIPPKVWDFEAGEGMIIDSGFTLTALVLEAYYPVVEALKKSLHNVKTINDPNNGGLEVCFDAEGFDESIAPRLVFHFGGGVRFEPPVKSYIIDAAPKTKCLGFLPVNGTRNSIIGNIMQQNHLWEFDIYKTLLVLLLLHATRELFLY*