AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251230 MtrunA17_Chr2g0309561 91.977 511 37 3 1 510 1 508 0.0 917
Msa0251230 MtrunA17_Chr3g0130931 27.875 513 280 22 14 511 12 449 1.85e-36 140
Msa0251230 MtrunA17_Chr5g0442921 27.096 513 295 15 34 510 84 553 2.18e-36 142
Msa0251230 MtrunA17_Chr3g0095891 27.235 481 278 14 63 511 19 459 5.65e-34 133
Msa0251230 MtrunA17_Chr6g0484901 26.407 462 263 17 61 510 95 491 8.48e-34 133
Msa0251230 MtrunA17_Chr7g0275731 27.216 485 276 18 36 510 67 484 4.50e-32 128
Msa0251230 MtrunA17_Chr1g0210201 27.206 408 225 14 112 510 123 467 3.41e-31 125
Msa0251230 MtrunA17_Chr3g0099891 26.471 408 227 12 113 510 110 454 1.31e-30 124
Msa0251230 MtrunA17_Chr3g0099901 27.451 408 231 13 112 510 134 485 1.56e-29 121
Msa0251230 MtrunA17_Chr8g0352671 28.288 403 228 15 117 510 86 436 1.79e-29 120
Msa0251230 MtrunA17_Chr5g0395931 28.186 408 220 16 118 510 86 435 3.22e-27 114
Msa0251230 MtrunA17_Chr5g0435871 27.665 394 236 12 119 510 88 434 3.33e-27 114
Msa0251230 MtrunA17_Chr8g0352661 27.251 411 223 17 119 511 85 437 7.56e-27 112
Msa0251230 MtrunA17_Chr5g0415951 28.753 393 230 14 121 510 89 434 1.03e-26 112
Msa0251230 MtrunA17_Chr5g0435971 27.411 394 237 12 119 510 85 431 1.35e-26 112
Msa0251230 MtrunA17_Chr1g0212321 25.681 514 296 17 14 510 42 486 2.12e-26 112
Msa0251230 MtrunA17_Chr5g0395911 27.250 400 233 14 118 510 65 413 4.63e-25 107
Msa0251230 MtrunA17_Chr8g0386441 26.952 397 235 15 119 511 85 430 6.26e-25 107
Msa0251230 MtrunA17_Chr1g0165201 24.486 486 277 16 35 510 64 469 1.49e-24 106
Msa0251230 MtrunA17_Chr6g0457401 26.582 474 273 17 46 510 29 436 2.48e-24 105
Msa0251230 MtrunA17_Chr6g0486981 26.448 397 238 14 120 510 88 436 8.05e-24 103
Msa0251230 MtrunA17_Chr5g0419291 23.669 507 298 17 12 510 3 428 1.06e-23 103
Msa0251230 MtrunA17_Chr2g0310831 28.148 405 221 19 119 510 93 440 1.91e-23 102
Msa0251230 MtrunA17_Chr2g0320621 26.588 425 243 14 107 511 63 438 2.29e-23 103
Msa0251230 MtrunA17_Chr5g0434411 27.674 430 232 17 100 511 70 438 6.68e-23 101
Msa0251230 MtrunA17_Chr3g0087851 26.250 400 237 15 119 510 87 436 6.10e-22 98.6
Msa0251230 MtrunA17_Chr4g0027681 23.821 403 256 10 119 511 76 437 1.24e-21 97.8
Msa0251230 MtrunA17_Chr6g0487471 25.500 400 240 13 119 510 85 434 2.54e-21 96.7
Msa0251230 MtrunA17_Chr2g0310801 26.763 482 279 19 36 511 21 434 2.95e-21 96.3
Msa0251230 MtrunA17_Chr2g0333991 23.571 420 247 14 107 508 70 433 2.96e-21 96.3
Msa0251230 MtrunA17_Chr1g0189381 23.041 434 275 14 92 511 42 430 3.71e-21 96.3
Msa0251230 MtrunA17_Chr2g0310821 25.662 491 264 23 36 511 39 443 4.52e-21 95.9
Msa0251230 MtrunA17_Chr2g0291201 25.121 414 243 16 110 510 92 451 5.65e-21 95.5
Msa0251230 MtrunA17_Chr7g0267171 25.537 419 243 16 119 510 89 465 2.63e-20 93.6
Msa0251230 MtrunA17_Chr7g0265331 24.402 418 262 13 106 511 66 441 6.15e-19 89.7
Msa0251230 MtrunA17_Chr2g0308001 26.551 403 232 16 120 510 58 408 7.42e-19 89.0
Msa0251230 MtrunA17_Chr2g0311451 22.449 490 289 17 37 510 21 435 1.49e-18 88.2
Msa0251230 MtrunA17_Chr1g0179751 23.843 432 277 12 92 511 79 470 1.50e-18 88.6
Msa0251230 MtrunA17_Chr5g0401601 23.951 405 244 11 119 511 87 439 1.50e-18 89.0
Msa0251230 MtrunA17_Chr1g0164401 23.838 495 278 21 26 506 15 424 3.09e-18 87.0
Msa0251230 MtrunA17_Chr5g0395891 29.129 333 193 16 194 510 7 312 3.50e-18 85.5
Msa0251230 MtrunA17_Chr2g0307991 24.810 395 244 13 120 510 59 404 4.12e-18 86.7
Msa0251230 MtrunA17_Chr4g0001991 25.893 448 263 17 73 511 131 518 9.04e-18 86.3
Msa0251230 MtrunA17_Chr7g0221681 23.778 450 275 18 81 511 34 434 1.68e-17 85.1
Msa0251230 MtrunA17_Chr2g0312941 26.034 411 232 17 121 507 88 450 2.45e-17 84.3
Msa0251230 MtrunA17_Chr4g0053721 23.515 404 245 11 119 510 79 430 4.55e-17 84.3
Msa0251230 MtrunA17_Chr8g0352691 27.660 282 158 13 247 511 8 260 7.21e-17 80.5
Msa0251230 MtrunA17_Chr8g0353261 25.513 439 247 18 86 506 53 429 2.37e-16 81.3
Msa0251230 MtrunA17_Chr5g0419151 28.520 277 178 11 239 510 106 367 4.67e-16 79.7
Msa0251230 MtrunA17_Chr8g0390761 23.501 417 248 14 105 511 101 456 6.27e-15 77.0
Msa0251230 MtrunA17_Chr3g0112051 23.399 406 221 17 123 510 76 409 8.89e-14 73.2
Msa0251230 MtrunA17_Chr4g0023351 28.148 270 142 12 120 385 58 279 4.57e-13 70.1
Msa0251230 MtrunA17_Chr3g0133071 29.493 217 130 9 306 511 234 438 8.64e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251230 AT3G12700.1 35.050 505 254 14 13 511 25 461 1.22e-95 298
Msa0251230 AT3G25700.1 31.090 431 238 15 96 510 62 449 3.68e-47 170
Msa0251230 AT3G18490.1 26.598 485 269 15 36 510 93 500 3.05e-38 146
Msa0251230 AT1G25510.1 27.459 488 288 17 31 510 54 483 3.01e-36 140
Msa0251230 AT1G01300.1 30.266 413 225 16 106 510 127 484 3.48e-35 137
Msa0251230 AT5G10770.1 25.572 481 291 14 38 511 54 474 2.65e-33 132
Msa0251230 AT3G59080.1 27.765 425 234 12 109 510 158 532 7.24e-31 126
Msa0251230 AT2G03200.1 27.536 414 218 18 119 510 105 458 9.92e-31 124
Msa0251230 AT2G42980.1 28.401 419 241 11 109 510 148 524 1.02e-30 125
Msa0251230 AT3G61820.1 27.972 429 244 16 94 510 108 483 2.24e-30 124
Msa0251230 AT1G64830.1 27.494 411 215 16 119 511 84 429 2.29e-29 120
Msa0251230 AT5G33340.1 28.465 404 220 15 119 510 88 434 1.93e-28 117
Msa0251230 AT5G10760.1 26.115 471 277 15 43 510 62 464 3.70e-27 114
Msa0251230 AT2G35615.1 26.357 516 292 18 11 511 2 444 2.59e-25 108
Msa0251230 AT1G09750.1 25.604 414 239 16 110 511 93 449 2.70e-23 102
Msa0251230 AT1G31450.1 27.674 430 248 13 95 511 63 442 3.88e-23 102
Msa0251230 AT1G08210.1 25.553 407 244 11 118 511 81 441 1.15e-22 101
Msa0251230 AT1G08210.3 25.553 407 244 11 118 511 129 489 1.22e-22 101
Msa0251230 AT1G08210.4 25.553 407 244 11 118 511 115 475 1.22e-22 101
Msa0251230 AT5G22850.1 24.505 404 255 10 118 511 78 441 2.40e-22 100
Msa0251230 AT3G20015.1 24.689 482 296 15 35 510 50 470 1.15e-21 98.2
Msa0251230 AT3G54400.1 26.265 415 226 17 110 510 76 424 7.26e-20 92.4
Msa0251230 AT3G59080.2 28.990 307 185 10 224 510 203 496 2.54e-19 91.3
Msa0251230 AT3G02740.1 24.939 413 239 16 117 511 81 440 8.16e-19 89.7
Msa0251230 AT1G08210.2 25.984 381 223 11 118 485 81 415 2.32e-18 88.6
Msa0251230 AT2G28220.1 24.688 401 223 15 121 511 67 398 1.34e-17 85.5
Msa0251230 AT3G02740.2 24.694 409 237 16 121 511 10 365 1.50e-17 85.1
Msa0251230 AT1G66180.1 25.641 429 235 18 103 511 63 427 3.24e-17 84.3
Msa0251230 AT2G36670.2 23.598 428 276 12 93 511 73 458 3.49e-17 84.7
Msa0251230 AT5G07030.1 24.096 415 240 16 110 511 103 455 3.70e-17 84.3
Msa0251230 AT3G25700.2 36.508 126 75 3 384 506 220 343 9.91e-17 82.0
Msa0251230 AT5G43100.1 23.472 409 233 14 119 511 74 418 1.33e-16 83.2
Msa0251230 AT4G30040.1 25.495 404 221 17 121 505 85 427 1.93e-16 82.0
Msa0251230 AT1G77480.1 25.721 416 240 16 112 511 58 420 2.12e-16 82.0
Msa0251230 AT1G77480.2 25.721 416 240 16 112 511 58 420 2.14e-16 82.0
Msa0251230 AT5G43100.2 23.472 409 233 14 119 511 74 418 2.18e-16 82.0
Msa0251230 AT2G36670.1 23.951 405 248 11 121 511 105 463 3.37e-16 81.6
Msa0251230 AT2G36670.4 23.951 405 248 11 121 511 34 392 9.17e-16 80.1
Msa0251230 AT2G36670.3 23.951 405 248 11 121 511 34 392 9.17e-16 80.1
Msa0251230 AT5G36260.1 22.816 412 256 12 114 511 71 434 1.15e-15 80.1
Msa0251230 AT2G23945.1 26.870 361 182 15 108 450 83 379 2.48e-15 79.0
Msa0251230 AT2G28010.1 24.566 403 217 17 121 511 65 392 3.50e-15 77.8
Msa0251230 AT1G05840.1 24.374 439 262 19 92 511 52 439 6.14e-15 77.8
Msa0251230 AT2G28030.1 24.304 395 228 12 121 511 61 388 3.29e-14 74.7
Msa0251230 AT5G02190.1 23.278 421 225 16 130 511 82 443 2.03e-13 72.8
Msa0251230 AT2G28040.2 24.060 399 225 16 120 511 55 382 2.91e-13 72.0
Msa0251230 AT1G79720.1 25.000 420 241 15 107 510 121 482 5.76e-13 71.6
Msa0251230 AT2G28040.1 24.060 399 225 16 120 511 64 391 7.09e-13 70.9
Msa0251230 AT5G45120.1 22.072 444 265 16 110 510 73 478 1.02e-11 67.8

Find 97 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCAAACCACCATTATT+TGG 0.151656 2_2:-40517214 None:intergenic
GAATGATTTGAATCAATAAA+AGG 0.191126 2_2:-40514188 None:intergenic
GGAACACGTAATTCTATTAT+TGG 0.204040 2_2:+40517385 Msa0251230:CDS
GAATTACGTGTTCCATTTAC+TGG 0.216571 2_2:-40517376 None:intergenic
GACAATGCTGGTCTAAAATT+TGG 0.217971 2_2:+40516860 Msa0251230:CDS
GATCAAGTTGAAGCTATAAA+AGG 0.233864 2_2:+40514318 Msa0251230:CDS
CCTAGGTTAGTGTTTCATTT+TGG 0.250952 2_2:+40517274 Msa0251230:CDS
TTATGCAACAAAATCATCTT+TGG 0.270285 2_2:+40517413 Msa0251230:CDS
TCACTCAACAATTTGACTTT+TGG 0.277317 2_2:-40516959 None:intergenic
TCATCTGCTGTGGGATTCTA+TGG 0.294165 2_2:+40516680 Msa0251230:CDS
TCAGGAAGAGATGTTGAAAT+TGG 0.314062 2_2:+40514471 Msa0251230:CDS
TCAAAAGGGATATATTTAGA+AGG 0.328714 2_2:+40514346 Msa0251230:CDS
GTAACATTCACACCATAAAA+TGG 0.329917 2_2:-40517013 None:intergenic
GTTTCAAGCTACCTAACATT+TGG 0.330880 2_2:+40516929 Msa0251230:CDS
GAACACCAGGACAAAAGTTT+TGG 0.330929 2_2:+40514520 Msa0251230:CDS
GATATTTATAAGAACACTAT+TGG 0.342468 2_2:+40517442 Msa0251230:CDS
GAAAATCCCACCAAAGGTTT+GGG 0.350338 2_2:+40517063 Msa0251230:CDS
ACGATTAATGATCCAAATAA+TGG 0.354193 2_2:+40517202 Msa0251230:CDS
TGCCTCTACAACAGGATAAT+AGG 0.358648 2_2:-40517152 None:intergenic
TCATGAAGAGCATGAGAATA+TGG 0.359184 2_2:+40514239 Msa0251230:CDS
AGGCATGATTCAAGATTTCT+TGG 0.371809 2_2:+40514288 Msa0251230:CDS
TGAAAATCCCACCAAAGGTT+TGG 0.372838 2_2:+40517062 Msa0251230:CDS
TGACAATCAGTCAAACTATA+AGG 0.373919 2_2:-40514792 None:intergenic
ATCCATGCCTTTATGAAGTC+AGG 0.375990 2_2:+40514826 Msa0251230:CDS
CTCTGATGTTAATGATTCAA+TGG 0.376518 2_2:+40517666 Msa0251230:three_prime_UTR
AAGCTTCAAAATCAAACAAT+TGG 0.385729 2_2:+40516746 Msa0251230:CDS
TGATCCAAATAATGGTGGTT+TGG 0.393986 2_2:+40517210 Msa0251230:CDS
TATGCAACAAAATCATCTTT+GGG 0.404556 2_2:+40517414 Msa0251230:CDS
TTCAAGAACAAGTGCTGTTA+AGG 0.405664 2_2:-40517128 None:intergenic
CAAATGGTCAACAAGACAAT+AGG 0.406150 2_2:-40516894 None:intergenic
TTGGAGTTGTTCCAAATGTT+AGG 0.416424 2_2:-40516940 None:intergenic
AAACAAACCTGACTTCATAA+AGG 0.428120 2_2:-40514833 None:intergenic
TTGGTTTAAATGTATGAGAA+AGG 0.428615 2_2:+40514572 Msa0251230:CDS
GTAATGAAATTGTGAATAAG+AGG 0.431201 2_2:-40514011 None:intergenic
CTATAAAAGGGTTCATCAAA+AGG 0.433627 2_2:+40514331 Msa0251230:CDS
GGCATGATTCAAGATTTCTT+GGG 0.435229 2_2:+40514289 Msa0251230:CDS
CATAAACATAATAAACATAA+AGG 0.437149 2_2:+40514618 Msa0251230:CDS
GCTTCAAAATCCCAAACCTT+TGG 0.441065 2_2:-40517073 None:intergenic
CATTCATTTGTTGACAATGC+TGG 0.443741 2_2:+40516848 Msa0251230:CDS
ATATTTGTACTTGTGATTCA+AGG 0.448474 2_2:-40514037 None:intergenic
GTTGGTGGAATATTAGCCTT+AGG 0.448786 2_2:+40516815 Msa0251230:CDS
TATTATGTTTATGTTTATGT+TGG 0.454187 2_2:-40514608 None:intergenic
AGATATATATGTATGTATCT+AGG 0.459314 2_2:-40514112 None:intergenic
ATACAGGAAGTGAGTTAACT+TGG 0.474918 2_2:+40514553 Msa0251230:CDS
GAAATCTTGAATCATGCCTA+TGG 0.478263 2_2:-40514284 None:intergenic
TCAAAATCCCAAACCTTTGG+TGG 0.478987 2_2:-40517070 None:intergenic
AAAAGAGAGAGAGAAGAAAG+AGG 0.482478 2_2:-40513982 None:intergenic
GAAATGATGGATCAAAGAAT+AGG 0.483791 2_2:+40514369 Msa0251230:CDS
AATGATTTGAATCAATAAAA+GGG 0.488996 2_2:-40514187 None:intergenic
ATGTTAATGATTCAATGGTA+TGG 0.492588 2_2:+40517671 Msa0251230:three_prime_UTR
CTCATACAGCAAGAAGAAGA+AGG 0.494652 2_2:+40514670 Msa0251230:CDS
TATATTTAGAAGGGAAATGA+TGG 0.495318 2_2:+40514356 Msa0251230:CDS
ATCAAGTTGAAGCTATAAAA+GGG 0.495500 2_2:+40514319 Msa0251230:CDS
TATAAAAGGGTTCATCAAAA+GGG 0.507128 2_2:+40514332 Msa0251230:CDS
ATGAATTATCAAGGTGGTCA+TGG 0.510467 2_2:+40514393 Msa0251230:CDS
TTGATCGTCGACGGAGATGC+CGG 0.510880 2_2:-40517035 None:intergenic
ATCTTTGACAGCTATGGTAG+TGG 0.513051 2_2:+40516653 Msa0251230:intron
CAAAATCCCAAACCTTTGGT+GGG 0.519085 2_2:-40517069 None:intergenic
TGAAGAGGAAATTGATGCAA+TGG 0.528126 2_2:+40514145 Msa0251230:CDS
AGAATAGGAATGAATTATCA+AGG 0.529627 2_2:+40514384 Msa0251230:CDS
TTCCCATATGAAAATGTTGG+TGG 0.533682 2_2:+40516800 Msa0251230:CDS
CAGCATTGTCAACAAATGAA+TGG 0.541187 2_2:-40516847 None:intergenic
ACTCTCTAGTTGCATGGAGA+AGG 0.546138 2_2:-40517472 None:intergenic
CAAAAGGGATATATTTAGAA+GGG 0.548098 2_2:+40514347 Msa0251230:CDS
TGAATGGTGTCTAAAGCCTA+AGG 0.550436 2_2:-40516831 None:intergenic
TCATAAAGGCATGGATCAGA+AGG 0.555785 2_2:-40514819 None:intergenic
TCAATGATGTAACTCTTCAC+TGG 0.557173 2_2:-40517319 None:intergenic
GAAGTTTGCTTTGATGCAGA+AGG 0.557366 2_2:+40517232 Msa0251230:CDS
TATTTGTACTTGTGATTCAA+GGG 0.559719 2_2:-40514036 None:intergenic
ATAACAACTCTCTAGTTGCA+TGG 0.561768 2_2:-40517478 None:intergenic
GGTTTCCCATATGAAAATGT+TGG 0.562696 2_2:+40516797 Msa0251230:CDS
GCATGATTCAAGATTTCTTG+GGG 0.578453 2_2:+40514290 Msa0251230:CDS
TATCTAATATGCAAATGAAG+AGG 0.579339 2_2:+40514130 Msa0251230:exon
AAACATAATAAACATAAAGG+AGG 0.582793 2_2:+40514621 Msa0251230:CDS
GGTGTTACAGTTGGAACACC+AGG 0.586302 2_2:+40514507 Msa0251230:CDS
CCAAAATGAAACACTAACCT+AGG 0.589520 2_2:-40517274 None:intergenic
TCATACAGCAAGAAGAAGAA+GGG 0.591156 2_2:+40514671 Msa0251230:CDS
TTGATGAGAGTATTGCGCCT+AGG 0.591169 2_2:+40517257 Msa0251230:CDS
AGCCTATTATCCTGTTGTAG+AGG 0.592083 2_2:+40517150 Msa0251230:CDS
TAATGAAATTGTGAATAAGA+GGG 0.593140 2_2:-40514010 None:intergenic
TTTCAGCATTTGATCGTCGA+CGG 0.594223 2_2:-40517044 None:intergenic
GAAGGGATGATCATTGACTC+AGG 0.595985 2_2:+40517100 Msa0251230:CDS
AACCTGACTTCATAAAGGCA+TGG 0.599467 2_2:-40514828 None:intergenic
ATTAATGATCCAAATAATGG+TGG 0.600681 2_2:+40517205 Msa0251230:CDS
TGTTAATGATTCAATGGTAT+GGG 0.605609 2_2:+40517672 Msa0251230:three_prime_UTR
AACATAATAAACATAAAGGA+GGG 0.609603 2_2:+40514622 Msa0251230:CDS
AATGCTGAAAATCCCACCAA+AGG 0.615934 2_2:+40517057 Msa0251230:CDS
CAATCAGTGATAAATAGTCC+AGG 0.618605 2_2:+40516776 Msa0251230:CDS
TGAGTCTAGAACTTATCCAT+AGG 0.624401 2_2:+40514268 Msa0251230:CDS
TTACTATTTGAGGTGTGTCG+AGG 0.632858 2_2:-40513930 None:intergenic
TAGTGGAATATCATCTGCTG+TGG 0.650542 2_2:+40516670 Msa0251230:CDS
AGTGGAATATCATCTGCTGT+GGG 0.677617 2_2:+40516671 Msa0251230:CDS
ATGATGTAACTCTTCACTGG+TGG 0.683679 2_2:-40517316 None:intergenic
GGACAAAACATATCATCACA+AGG 0.716631 2_2:-40514708 None:intergenic
ATAGGAATGAATTATCAAGG+TGG 0.746997 2_2:+40514387 Msa0251230:CDS
TGTTCATAGCATCAACAACG+AGG 0.756855 2_2:+40514212 Msa0251230:CDS
TGAAATGTATGAGAACGATG+AGG 0.786483 2_2:-40514729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTATTTATTTTT+TGG - chr2_2:40515811-40515830 None:intergenic 0.0%
!!! AATCAAAATATCATTTATTT+TGG - chr2_2:40515003-40515022 None:intergenic 10.0%
!!! AAATGATATTTTGATTTTTA+AGG + chr2_2:40515007-40515026 Msa0251230:intron 10.0%
!!! TTAATCTCTAAAAAATTAAA+CGG + chr2_2:40516096-40516115 Msa0251230:intron 10.0%
!!! AAATTTCTCATATTTATTTT+AGG + chr2_2:40516569-40516588 Msa0251230:intron 10.0%
!! AATGATTTGAATCAATAAAA+GGG - chr2_2:40514190-40514209 None:intergenic 15.0%
!! TATTATGTTTATGTTTATGT+TGG - chr2_2:40514611-40514630 None:intergenic 15.0%
!! CATAAACATAATAAACATAA+AGG + chr2_2:40514618-40514637 Msa0251230:CDS 15.0%
!!! ATTAATAAATAGGATTGTTT+TGG + chr2_2:40514940-40514959 Msa0251230:intron 15.0%
!!! TAAGAAAAAAACTACATTTT+AGG + chr2_2:40515137-40515156 Msa0251230:intron 15.0%
!! TAAAGATATATTAATATGTC+TGG - chr2_2:40515287-40515306 None:intergenic 15.0%
!! TAGAGATTAAAATCAAAATT+CGG - chr2_2:40516086-40516105 None:intergenic 15.0%
!! TTATAAATGAGAATTAATGT+TGG + chr2_2:40516302-40516321 Msa0251230:intron 15.0%
!!! TTTTTCAATTTTAGTTTGAA+AGG - chr2_2:40516464-40516483 None:intergenic 15.0%
!! TAATGAAATTGTGAATAAGA+GGG - chr2_2:40514013-40514032 None:intergenic 20.0%
!! AGATATATATGTATGTATCT+AGG - chr2_2:40514115-40514134 None:intergenic 20.0%
!! GAATGATTTGAATCAATAAA+AGG - chr2_2:40514191-40514210 None:intergenic 20.0%
!! AAACATAATAAACATAAAGG+AGG + chr2_2:40514621-40514640 Msa0251230:CDS 20.0%
!! AACATAATAAACATAAAGGA+GGG + chr2_2:40514622-40514641 Msa0251230:CDS 20.0%
!!! AAATATGAGAAATTGTTTTG+TGG + chr2_2:40514902-40514921 Msa0251230:intron 20.0%
!!! AATATGAGAAATTGTTTTGT+GGG + chr2_2:40514903-40514922 Msa0251230:intron 20.0%
!! TTGGAAGTAGATTAATAAAT+AGG + chr2_2:40514930-40514949 Msa0251230:intron 20.0%
!!! TTTTTTCTTATATTAGTGAC+CGG - chr2_2:40515127-40515146 None:intergenic 20.0%
!! CATTCATTTAATGAAGTATA+TGG + chr2_2:40515162-40515181 Msa0251230:intron 20.0%
!! TATATTTAACTATGCATCTA+TGG + chr2_2:40515305-40515324 Msa0251230:intron 20.0%
!! GAAAAGATAAGAGAAATTAA+AGG + chr2_2:40515400-40515419 Msa0251230:intron 20.0%
!! TAATCAATGTGTTTGATTAT+AGG + chr2_2:40516029-40516048 Msa0251230:intron 20.0%
!! AATCAATGTGTTTGATTATA+GGG + chr2_2:40516030-40516049 Msa0251230:intron 20.0%
!! CAAAATTCGGTATATTTATA+GGG - chr2_2:40516073-40516092 None:intergenic 20.0%
!! TCAAAATTCGGTATATTTAT+AGG - chr2_2:40516074-40516093 None:intergenic 20.0%
!! AATGTAAGTTAATATATGTG+AGG - chr2_2:40516133-40516152 None:intergenic 20.0%
!! TAATTCTCATTTATAACCAA+TGG - chr2_2:40516298-40516317 None:intergenic 20.0%
!! CAAAAGTTTGATAAATGAAT+TGG + chr2_2:40516495-40516514 Msa0251230:intron 20.0%
!! GATATTTATAAGAACACTAT+TGG + chr2_2:40517442-40517461 Msa0251230:CDS 20.0%
!!! AATGTTTTTTCTTATTCTCA+TGG + chr2_2:40517508-40517527 Msa0251230:three_prime_UTR 20.0%
!!! TTTTGTGTATTTGATTGAAT+TGG + chr2_2:40517543-40517562 Msa0251230:three_prime_UTR 20.0%
!! AGATTGTGTTTTACTATTTG+AGG - chr2_2:40513943-40513962 None:intergenic 25.0%
! GTAATGAAATTGTGAATAAG+AGG - chr2_2:40514014-40514033 None:intergenic 25.0%
! TATTTGTACTTGTGATTCAA+GGG - chr2_2:40514039-40514058 None:intergenic 25.0%
! ATATTTGTACTTGTGATTCA+AGG - chr2_2:40514040-40514059 None:intergenic 25.0%
! TATCTAATATGCAAATGAAG+AGG + chr2_2:40514130-40514149 Msa0251230:exon 25.0%
!!! ATCAAGTTGAAGCTATAAAA+GGG + chr2_2:40514319-40514338 Msa0251230:CDS 25.0%
! TATAAAAGGGTTCATCAAAA+GGG + chr2_2:40514332-40514351 Msa0251230:CDS 25.0%
! TCAAAAGGGATATATTTAGA+AGG + chr2_2:40514346-40514365 Msa0251230:CDS 25.0%
! CAAAAGGGATATATTTAGAA+GGG + chr2_2:40514347-40514366 Msa0251230:CDS 25.0%
! TATATTTAGAAGGGAAATGA+TGG + chr2_2:40514356-40514375 Msa0251230:CDS 25.0%
! AGAATAGGAATGAATTATCA+AGG + chr2_2:40514384-40514403 Msa0251230:CDS 25.0%
!! TTTGAATTTTCAATGCATTC+AGG + chr2_2:40514453-40514472 Msa0251230:CDS 25.0%
!! GAAATTGGTGAATATTTTGT+TGG + chr2_2:40514486-40514505 Msa0251230:CDS 25.0%
! TTGGTTTAAATGTATGAGAA+AGG + chr2_2:40514572-40514591 Msa0251230:CDS 25.0%
!!! ATATGAGAAATTGTTTTGTG+GGG + chr2_2:40514904-40514923 Msa0251230:intron 25.0%
! TATTTAAGAAATACACCATC+CGG + chr2_2:40515105-40515124 Msa0251230:intron 25.0%
! CATTTATTTAATGATGCACA+TGG - chr2_2:40515201-40515220 None:intergenic 25.0%
!! AAATTTACCTTCTCTTTTGT+GGG + chr2_2:40515472-40515491 Msa0251230:intron 25.0%
! ATTGTAACACATAGTCAAAA+CGG - chr2_2:40515772-40515791 None:intergenic 25.0%
! CCAATTGAAATTGAAATCTT+TGG - chr2_2:40515870-40515889 None:intergenic 25.0%
! CCAAAGATTTCAATTTCAAT+TGG + chr2_2:40515867-40515886 Msa0251230:intron 25.0%
! AGATTTCAATTTCAATTGGT+TGG + chr2_2:40515871-40515890 Msa0251230:intron 25.0%
!!! AATTGGTTGGTTTGTTTATA+AGG + chr2_2:40515884-40515903 Msa0251230:intron 25.0%
!! TCTTAAGTGCACATTAATTT+TGG - chr2_2:40515921-40515940 None:intergenic 25.0%
!! ATTATTGATGGGTATAAACA+AGG - chr2_2:40516013-40516032 None:intergenic 25.0%
!! CAAACACATTGATTATTGAT+GGG - chr2_2:40516024-40516043 None:intergenic 25.0%
!! TCAAACACATTGATTATTGA+TGG - chr2_2:40516025-40516044 None:intergenic 25.0%
!!! GTATGAGAAGTACTTTTTAA+AGG - chr2_2:40516222-40516241 None:intergenic 25.0%
! AAATGAGAATTAATGTTGGT+AGG + chr2_2:40516306-40516325 Msa0251230:intron 25.0%
! ATATCTAGATATAGTTGTCA+AGG - chr2_2:40516433-40516452 None:intergenic 25.0%
! AAATTTAAAGACACGTGTTA+AGG - chr2_2:40516555-40516574 None:intergenic 25.0%
! AACCTAAGCAATAAAAAGAT+AGG + chr2_2:40516722-40516741 Msa0251230:CDS 25.0%
!! TTCCTATCTTTTTATTGCTT+AGG - chr2_2:40516727-40516746 None:intergenic 25.0%
! AAGCTTCAAAATCAAACAAT+TGG + chr2_2:40516746-40516765 Msa0251230:CDS 25.0%
! ACGATTAATGATCCAAATAA+TGG + chr2_2:40517202-40517221 Msa0251230:CDS 25.0%
! ATTAATGATCCAAATAATGG+TGG + chr2_2:40517205-40517224 Msa0251230:CDS 25.0%
! TTATGCAACAAAATCATCTT+TGG + chr2_2:40517413-40517432 Msa0251230:CDS 25.0%
! TATGCAACAAAATCATCTTT+GGG + chr2_2:40517414-40517433 Msa0251230:CDS 25.0%
! ATGTTAATGATTCAATGGTA+TGG + chr2_2:40517671-40517690 Msa0251230:three_prime_UTR 25.0%
! TGTTAATGATTCAATGGTAT+GGG + chr2_2:40517672-40517691 Msa0251230:three_prime_UTR 25.0%
!!! ATAACCACTTTTTCATTGTA+TGG - chr2_2:40517711-40517730 None:intergenic 25.0%
! ACAATGAAAAAGTGGTTATT+TGG + chr2_2:40517712-40517731 Msa0251230:three_prime_UTR 25.0%
! CAATGAAAAAGTGGTTATTT+GGG + chr2_2:40517713-40517732 Msa0251230:three_prime_UTR 25.0%
!! GATCAAGTTGAAGCTATAAA+AGG + chr2_2:40514318-40514337 Msa0251230:CDS 30.0%
CTATAAAAGGGTTCATCAAA+AGG + chr2_2:40514331-40514350 Msa0251230:CDS 30.0%
!! GAAATGATGGATCAAAGAAT+AGG + chr2_2:40514369-40514388 Msa0251230:CDS 30.0%
ATAGGAATGAATTATCAAGG+TGG + chr2_2:40514387-40514406 Msa0251230:CDS 30.0%
!!! TATTTTGTTGGTGTTACAGT+TGG + chr2_2:40514498-40514517 Msa0251230:CDS 30.0%
TGACAATCAGTCAAACTATA+AGG - chr2_2:40514795-40514814 None:intergenic 30.0%
AAACAAACCTGACTTCATAA+AGG - chr2_2:40514836-40514855 None:intergenic 30.0%
!! TATGAGAAATTGTTTTGTGG+GGG + chr2_2:40514905-40514924 Msa0251230:intron 30.0%
! ACAAGTGTTGCTAAATGAAT+AGG + chr2_2:40515363-40515382 Msa0251230:intron 30.0%
! CAAGTGTTGCTAAATGAATA+GGG + chr2_2:40515364-40515383 Msa0251230:intron 30.0%
! ATTAAAGGCTTGCATCTTTT+TGG + chr2_2:40515444-40515463 Msa0251230:intron 30.0%
CAAAAGAGAAGGTAAATTTG+AGG - chr2_2:40515471-40515490 None:intergenic 30.0%
! CAAATTTACCTTCTCTTTTG+TGG + chr2_2:40515471-40515490 Msa0251230:intron 30.0%
! TCTCACATTATAAGTGGTTT+TGG - chr2_2:40515637-40515656 None:intergenic 30.0%
AAATCTTTGGATATGTCTTG+TGG - chr2_2:40515857-40515876 None:intergenic 30.0%
! AACGTATTTAGAGTTCTGAT+AGG + chr2_2:40515965-40515984 Msa0251230:intron 30.0%
TCTCATTTATAACCAATGGT+TGG - chr2_2:40516294-40516313 None:intergenic 30.0%
!!! TTTTAGTTTGAAAGGAGTGA+AGG - chr2_2:40516456-40516475 None:intergenic 30.0%
GAACATTAATCATAGAGTAC+TGG - chr2_2:40516604-40516623 None:intergenic 30.0%
AATCTTATCTTTGACAGCTA+TGG + chr2_2:40516647-40516666 Msa0251230:intron 30.0%
! TTCCACCAACATTTTCATAT+GGG - chr2_2:40516805-40516824 None:intergenic 30.0%
! ATTCCACCAACATTTTCATA+TGG - chr2_2:40516806-40516825 None:intergenic 30.0%
! AAACATTTTTGTGGCTCAAA+TGG - chr2_2:40516913-40516932 None:intergenic 30.0%
!! TCACTCAACAATTTGACTTT+TGG - chr2_2:40516962-40516981 None:intergenic 30.0%
! CTTCTCTATCAACCATTTTA+TGG + chr2_2:40517001-40517020 Msa0251230:CDS 30.0%
GTAACATTCACACCATAAAA+TGG - chr2_2:40517016-40517035 None:intergenic 30.0%
! TTTTATGGTGTGAATGTTAC+CGG + chr2_2:40517016-40517035 Msa0251230:CDS 30.0%
!!! AATCCAAGACACTTTGTTTT+TGG - chr2_2:40517352-40517371 None:intergenic 30.0%
GGAACACGTAATTCTATTAT+TGG + chr2_2:40517385-40517404 Msa0251230:CDS 30.0%
CTCTGATGTTAATGATTCAA+TGG + chr2_2:40517666-40517685 Msa0251230:three_prime_UTR 30.0%
AAAAGAGAGAGAGAAGAAAG+AGG - chr2_2:40513985-40514004 None:intergenic 35.0%
TGAAGAGGAAATTGATGCAA+TGG + chr2_2:40514145-40514164 Msa0251230:CDS 35.0%
! TCATGAAGAGCATGAGAATA+TGG + chr2_2:40514239-40514258 Msa0251230:CDS 35.0%
! TGAGTCTAGAACTTATCCAT+AGG + chr2_2:40514268-40514287 Msa0251230:CDS 35.0%
GAAATCTTGAATCATGCCTA+TGG - chr2_2:40514287-40514306 None:intergenic 35.0%
AGGCATGATTCAAGATTTCT+TGG + chr2_2:40514288-40514307 Msa0251230:CDS 35.0%
GGCATGATTCAAGATTTCTT+GGG + chr2_2:40514289-40514308 Msa0251230:CDS 35.0%
GCATGATTCAAGATTTCTTG+GGG + chr2_2:40514290-40514309 Msa0251230:CDS 35.0%
ATGAATTATCAAGGTGGTCA+TGG + chr2_2:40514393-40514412 Msa0251230:CDS 35.0%
TCAGGAAGAGATGTTGAAAT+TGG + chr2_2:40514471-40514490 Msa0251230:CDS 35.0%
! ATAAGCCAAAACTTTTGTCC+TGG - chr2_2:40514528-40514547 None:intergenic 35.0%
!!! TTTTGGCTTATTGCTGATAC+AGG + chr2_2:40514537-40514556 Msa0251230:CDS 35.0%
ATACAGGAAGTGAGTTAACT+TGG + chr2_2:40514553-40514572 Msa0251230:CDS 35.0%
TCATACAGCAAGAAGAAGAA+GGG + chr2_2:40514671-40514690 Msa0251230:CDS 35.0%
GGACAAAACATATCATCACA+AGG - chr2_2:40514711-40514730 None:intergenic 35.0%
TGAAATGTATGAGAACGATG+AGG - chr2_2:40514732-40514751 None:intergenic 35.0%
TTCTTATATTAGTGACCGGA+TGG - chr2_2:40515123-40515142 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr2_2:40515239-40515258 Msa0251230:intron 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr2_2:40515240-40515259 Msa0251230:intron 35.0%
AATTTGTCCCACAAAAGAGA+AGG - chr2_2:40515482-40515501 None:intergenic 35.0%
TGGGACAAATTAAGACAGTT+GGG + chr2_2:40515491-40515510 Msa0251230:intron 35.0%
ACAGAGGAAGTTATTAGTAG+CGG + chr2_2:40515656-40515675 Msa0251230:intron 35.0%
CAAAAACCAGCCAAAATACT+TGG + chr2_2:40515690-40515709 Msa0251230:intron 35.0%
! GAGACATGTTCCAAGTATTT+TGG - chr2_2:40515703-40515722 None:intergenic 35.0%
CTCATAAGACATTTAGTAGC+AGG + chr2_2:40516195-40516214 Msa0251230:intron 35.0%
TGCCTTGAATGAAGAAATGT+GGG - chr2_2:40516345-40516364 None:intergenic 35.0%
ATGCCTTGAATGAAGAAATG+TGG - chr2_2:40516346-40516365 None:intergenic 35.0%
CACAGATTTAACAAAGAGAC+TGG - chr2_2:40516378-40516397 None:intergenic 35.0%
TATAGTTGTCAAGGTGAACA+GGG - chr2_2:40516424-40516443 None:intergenic 35.0%
ATATAGTTGTCAAGGTGAAC+AGG - chr2_2:40516425-40516444 None:intergenic 35.0%
CAATCAGTGATAAATAGTCC+AGG + chr2_2:40516776-40516795 Msa0251230:CDS 35.0%
! ACATTTTCATATGGGAAACC+TGG - chr2_2:40516797-40516816 None:intergenic 35.0%
GGTTTCCCATATGAAAATGT+TGG + chr2_2:40516797-40516816 Msa0251230:CDS 35.0%
TTCCCATATGAAAATGTTGG+TGG + chr2_2:40516800-40516819 Msa0251230:CDS 35.0%
CAGCATTGTCAACAAATGAA+TGG - chr2_2:40516850-40516869 None:intergenic 35.0%
! CATTCATTTGTTGACAATGC+TGG + chr2_2:40516848-40516867 Msa0251230:CDS 35.0%
! GACAATGCTGGTCTAAAATT+TGG + chr2_2:40516860-40516879 Msa0251230:CDS 35.0%
CAAATGGTCAACAAGACAAT+AGG - chr2_2:40516897-40516916 None:intergenic 35.0%
! GGTAGCTTGAAACATTTTTG+TGG - chr2_2:40516922-40516941 None:intergenic 35.0%
GTTTCAAGCTACCTAACATT+TGG + chr2_2:40516929-40516948 Msa0251230:CDS 35.0%
TTGGAGTTGTTCCAAATGTT+AGG - chr2_2:40516943-40516962 None:intergenic 35.0%
! TTCAAGAACAAGTGCTGTTA+AGG - chr2_2:40517131-40517150 None:intergenic 35.0%
!! TTTTTCAATGCCTCTACAAC+AGG - chr2_2:40517163-40517182 None:intergenic 35.0%
TGATCCAAATAATGGTGGTT+TGG + chr2_2:40517210-40517229 Msa0251230:CDS 35.0%
ACTTCCAAACCACCATTATT+TGG - chr2_2:40517217-40517236 None:intergenic 35.0%
CCAAAATGAAACACTAACCT+AGG - chr2_2:40517277-40517296 None:intergenic 35.0%
! CCTAGGTTAGTGTTTCATTT+TGG + chr2_2:40517274-40517293 Msa0251230:CDS 35.0%
! AGGTTAGTGTTTCATTTTGG+TGG + chr2_2:40517277-40517296 Msa0251230:CDS 35.0%
!! TTAGTGTTTCATTTTGGTGG+AGG + chr2_2:40517280-40517299 Msa0251230:CDS 35.0%
!! TTCATTTTGGTGGAGGAATA+AGG + chr2_2:40517287-40517306 Msa0251230:CDS 35.0%
TCAATGATGTAACTCTTCAC+TGG - chr2_2:40517322-40517341 None:intergenic 35.0%
! CTTGGATTTTTGCCAGTAAA+TGG + chr2_2:40517364-40517383 Msa0251230:CDS 35.0%
GAATTACGTGTTCCATTTAC+TGG - chr2_2:40517379-40517398 None:intergenic 35.0%
ATAACAACTCTCTAGTTGCA+TGG - chr2_2:40517481-40517500 None:intergenic 35.0%
GCATCCATACAATGAAAAAG+TGG + chr2_2:40517704-40517723 Msa0251230:three_prime_UTR 35.0%
! TTACTATTTGAGGTGTGTCG+AGG - chr2_2:40513933-40513952 None:intergenic 40.0%
TGTTCATAGCATCAACAACG+AGG + chr2_2:40514212-40514231 Msa0251230:CDS 40.0%
! GAACACCAGGACAAAAGTTT+TGG + chr2_2:40514520-40514539 Msa0251230:CDS 40.0%
CTCATACAGCAAGAAGAAGA+AGG + chr2_2:40514670-40514689 Msa0251230:CDS 40.0%
! TCATAAAGGCATGGATCAGA+AGG - chr2_2:40514822-40514841 None:intergenic 40.0%
ATCCATGCCTTTATGAAGTC+AGG + chr2_2:40514826-40514845 Msa0251230:CDS 40.0%
AACCTGACTTCATAAAGGCA+TGG - chr2_2:40514831-40514850 None:intergenic 40.0%
!! AAATTGTTTTGTGGGGGTGT+TGG + chr2_2:40514911-40514930 Msa0251230:intron 40.0%
! ACCAGAGGGTGTATGTTTAA+GGG + chr2_2:40515254-40515273 Msa0251230:intron 40.0%
GTGGGACAAATTAAGACAGT+TGG + chr2_2:40515490-40515509 Msa0251230:intron 40.0%
GGGACAAATTAAGACAGTTG+GGG + chr2_2:40515492-40515511 Msa0251230:intron 40.0%
ACAAATTAAGACAGTTGGGG+AGG + chr2_2:40515495-40515514 Msa0251230:intron 40.0%
CCTCTGTCTCACATTATAAG+TGG - chr2_2:40515643-40515662 None:intergenic 40.0%
CCACTTATAATGTGAGACAG+AGG + chr2_2:40515640-40515659 Msa0251230:intron 40.0%
!!! CATGTTCCAAGTATTTTGGC+TGG - chr2_2:40515699-40515718 None:intergenic 40.0%
GAGCAGAACATTGTCTAGTA+CGG + chr2_2:40515941-40515960 Msa0251230:intron 40.0%
! TAGAGTTCTGATAGGAGTGA+TGG + chr2_2:40515973-40515992 Msa0251230:intron 40.0%
TATAACCAATGGTTGGATGC+TGG - chr2_2:40516287-40516306 None:intergenic 40.0%
GTCCCACATTTCTTCATTCA+AGG + chr2_2:40516340-40516359 Msa0251230:intron 40.0%
TTTCTTCATTCAAGGCATGC+AGG + chr2_2:40516348-40516367 Msa0251230:intron 40.0%
TAAAAGGTTGGGCTAATTGC+TGG - chr2_2:40516401-40516420 None:intergenic 40.0%
ATCTTTGACAGCTATGGTAG+TGG + chr2_2:40516653-40516672 Msa0251230:intron 40.0%
TAGTGGAATATCATCTGCTG+TGG + chr2_2:40516670-40516689 Msa0251230:CDS 40.0%
AGTGGAATATCATCTGCTGT+GGG + chr2_2:40516671-40516690 Msa0251230:CDS 40.0%
!! GTTGGTGGAATATTAGCCTT+AGG + chr2_2:40516815-40516834 Msa0251230:CDS 40.0%
! TGAATGGTGTCTAAAGCCTA+AGG - chr2_2:40516834-40516853 None:intergenic 40.0%
TTTCAGCATTTGATCGTCGA+CGG - chr2_2:40517047-40517066 None:intergenic 40.0%
AATGCTGAAAATCCCACCAA+AGG + chr2_2:40517057-40517076 Msa0251230:CDS 40.0%
TGAAAATCCCACCAAAGGTT+TGG + chr2_2:40517062-40517081 Msa0251230:CDS 40.0%
GAAAATCCCACCAAAGGTTT+GGG + chr2_2:40517063-40517082 Msa0251230:CDS 40.0%
CAAAATCCCAAACCTTTGGT+GGG - chr2_2:40517072-40517091 None:intergenic 40.0%
TCAAAATCCCAAACCTTTGG+TGG - chr2_2:40517073-40517092 None:intergenic 40.0%
GCTTCAAAATCCCAAACCTT+TGG - chr2_2:40517076-40517095 None:intergenic 40.0%
!!! AAGGTTTGGGATTTTGAAGC+TGG + chr2_2:40517076-40517095 Msa0251230:CDS 40.0%
AGCCTATTATCCTGTTGTAG+AGG + chr2_2:40517150-40517169 Msa0251230:CDS 40.0%
TGCCTCTACAACAGGATAAT+AGG - chr2_2:40517155-40517174 None:intergenic 40.0%
! GAAGTTTGCTTTGATGCAGA+AGG + chr2_2:40517232-40517251 Msa0251230:CDS 40.0%
ATGATGTAACTCTTCACTGG+TGG - chr2_2:40517319-40517338 None:intergenic 40.0%
! GCACCAAAAACAAAGTGTCT+TGG + chr2_2:40517346-40517365 Msa0251230:CDS 40.0%
! GACCAGAGGGTGTATGTTTA+AGG + chr2_2:40515253-40515272 Msa0251230:intron 45.0%
ACCCTTAAACATACACCCTC+TGG - chr2_2:40515258-40515277 None:intergenic 45.0%
! GTTGCTGGGTCATCTTTTTG+TGG - chr2_2:40516256-40516275 None:intergenic 45.0%
TGCTGGAAAGAATGGTTGCT+GGG - chr2_2:40516270-40516289 None:intergenic 45.0%
ATGCTGGAAAGAATGGTTGC+TGG - chr2_2:40516271-40516290 None:intergenic 45.0%
TGGTTGGATGCTGGAAAGAA+TGG - chr2_2:40516278-40516297 None:intergenic 45.0%
TCTTTCCAGCATCCAACCAT+TGG + chr2_2:40516279-40516298 Msa0251230:intron 45.0%
GGTGAACAGGGTAAAAGGTT+GGG - chr2_2:40516412-40516431 None:intergenic 45.0%
AGGTGAACAGGGTAAAAGGT+TGG - chr2_2:40516413-40516432 None:intergenic 45.0%
GTCAAGGTGAACAGGGTAAA+AGG - chr2_2:40516417-40516436 None:intergenic 45.0%
TCATCTGCTGTGGGATTCTA+TGG + chr2_2:40516680-40516699 Msa0251230:CDS 45.0%
!!! TGGGATTTTGAAGCTGGTGA+AGG + chr2_2:40517082-40517101 Msa0251230:CDS 45.0%
!!! GGGATTTTGAAGCTGGTGAA+GGG + chr2_2:40517083-40517102 Msa0251230:CDS 45.0%
!! GAAGGGATGATCATTGACTC+AGG + chr2_2:40517100-40517119 Msa0251230:CDS 45.0%
!! TTGATGAGAGTATTGCGCCT+AGG + chr2_2:40517257-40517276 Msa0251230:CDS 45.0%
ACTCTCTAGTTGCATGGAGA+AGG - chr2_2:40517475-40517494 None:intergenic 45.0%
!!! ATATTTTTTTTAACAATTAA+AGG + chr2_2:40515429-40515448 Msa0251230:intron 5.0%
!! AAAAAGTAATAAATAATTAA+AGG + chr2_2:40515536-40515555 Msa0251230:intron 5.0%
! GGTGTTACAGTTGGAACACC+AGG + chr2_2:40514507-40514526 Msa0251230:CDS 50.0%
TTGATCGTCGACGGAGATGC+CGG - chr2_2:40517038-40517057 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 40513930 40517736 40513930 ID=Msa0251230;Name=Msa0251230
chr2_2 mRNA 40513930 40517736 40513930 ID=Msa0251230-mRNA-1;Parent=Msa0251230;Name=Msa0251230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=208|1|1|1|1|1|2|247|511
chr2_2 exon 40513930 40514847 40513930 ID=Msa0251230-mRNA-1:exon:12692;Parent=Msa0251230-mRNA-1
chr2_2 exon 40516664 40517736 40516664 ID=Msa0251230-mRNA-1:exon:12693;Parent=Msa0251230-mRNA-1
chr2_2 five_prime_UTR 40513930 40514137 40513930 ID=Msa0251230-mRNA-1:five_prime_utr;Parent=Msa0251230-mRNA-1
chr2_2 CDS 40514138 40514847 40514138 ID=Msa0251230-mRNA-1:cds;Parent=Msa0251230-mRNA-1
chr2_2 CDS 40516664 40517489 40516664 ID=Msa0251230-mRNA-1:cds;Parent=Msa0251230-mRNA-1
chr2_2 three_prime_UTR 40517490 40517736 40517490 ID=Msa0251230-mRNA-1:three_prime_utr;Parent=Msa0251230-mRNA-1
Gene Sequence

>Msa0251230

ATGCAAATGAAGAGGAAATTGATGCAATGGAGTACACAAATTCTCATGACCCTTTTATTGATTCAAATCATTCATGTTCATAGCATCAACAACGAGGAAGATCATGAAGAGCATGAGAATATGGAGAAGATGAGTCTAGAACTTATCCATAGGCATGATTCAAGATTTCTTGGGGAGATAGATCAAGTTGAAGCTATAAAAGGGTTCATCAAAAGGGATATATTTAGAAGGGAAATGATGGATCAAAGAATAGGAATGAATTATCAAGGTGGTCATGGTAATAATAGAAGAAAAGACATTGAAATGAAACAAGATTTTGAATTTTCAATGCATTCAGGAAGAGATGTTGAAATTGGTGAATATTTTGTTGGTGTTACAGTTGGAACACCAGGACAAAAGTTTTGGCTTATTGCTGATACAGGAAGTGAGTTAACTTGGTTTAAATGTATGAGAAAGGTTCATCATAATCACCAACATAAACATAAACATAATAAACATAAAGGAGGGTCAAAGACAAAATCAAGAACAAAATCTCATACAGCAAGAAGAAGAAGGGCTCATTCTCATAATCCTTGTGATGATATGTTTTGTCCTCATCGTTCTCATACATTTCATCAAATTTCTTGTTCATCTAAAATGTGCATTGCTGAACTTCCTTATAGTTTGACTGATTGTCAAAGTCCTTCTGATCCATGCCTTTATGAAGTCAGCTATGGTAGTGGAATATCATCTGCTGTGGGATTCTATGGCACTGACACAATATCAATAAACCTAAGCAATAAAAAGATAGGAAAGCTTCAAAATCAAACAATTGGATGCACACAATCAGTGATAAATAGTCCAGGTTTCCCATATGAAAATGTTGGTGGAATATTAGCCTTAGGCTTTAGACACCATTCATTTGTTGACAATGCTGGTCTAAAATTTGGTTCAAAATTTTCCTATTGTCTTGTTGACCATTTGAGCCACAAAAATGTTTCAAGCTACCTAACATTTGGAACAACTCCAAAAGTCAAATTGTTGAGTGAAATCAAAAGAACAGACATGCTTCTCTATCAACCATTTTATGGTGTGAATGTTACCGGCATCTCCGTCGACGATCAAATGCTGAAAATCCCACCAAAGGTTTGGGATTTTGAAGCTGGTGAAGGGATGATCATTGACTCAGGTTTTACCTTAACAGCACTTGTTCTTGAAGCCTATTATCCTGTTGTAGAGGCATTGAAAAAATCTTTGCACAATGTGAAAACGATTAATGATCCAAATAATGGTGGTTTGGAAGTTTGCTTTGATGCAGAAGGTTTTGATGAGAGTATTGCGCCTAGGTTAGTGTTTCATTTTGGTGGAGGAATAAGGTTTGAACCACCAGTGAAGAGTTACATCATTGATGCTGCACCAAAAACAAAGTGTCTTGGATTTTTGCCAGTAAATGGAACACGTAATTCTATTATTGGTAATATTATGCAACAAAATCATCTTTGGGAATTTGATATTTATAAGAACACTATTGGTTTTGCTCCTTCTCCATGCAACTAG
Protein sequence

>Msa0251230

MQMKRKLMQWSTQILMTLLLIQIIHVHSINNEEDHEEHENMEKMSLELIHRHDSRFLGEIDQVEAIKGFIKRDIFRREMMDQRIGMNYQGGHGNNRRKDIEMKQDFEFSMHSGRDVEIGEYFVGVTVGTPGQKFWLIADTGSELTWFKCMRKVHHNHQHKHKHNKHKGGSKTKSRTKSHTARRRRAHSHNPCDDMFCPHRSHTFHQISCSSKMCIAELPYSLTDCQSPSDPCLYEVSYGSGISSAVGFYGTDTISINLSNKKIGKLQNQTIGCTQSVINSPGFPYENVGGILALGFRHHSFVDNAGLKFGSKFSYCLVDHLSHKNVSSYLTFGTTPKVKLLSEIKRTDMLLYQPFYGVNVTGISVDDQMLKIPPKVWDFEAGEGMIIDSGFTLTALVLEAYYPVVEALKKSLHNVKTINDPNNGGLEVCFDAEGFDESIAPRLVFHFGGGIRFEPPVKSYIIDAAPKTKCLGFLPVNGTRNSIIGNIMQQNHLWEFDIYKNTIGFAPSPCN*