Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331450 | RHN71717.1 | 42.553 | 235 | 133 | 2 | 4 | 238 | 51 | 283 | 8.64e-58 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191840 | Msa0331450 | 0.804165 | 2.462162e-49 | -8.615850e-47 |
| Msa0331450 | Msa0814870 | 0.812595 | 3.918073e-51 | -8.615850e-47 |
| Msa0331450 | Msa0956940 | 0.816120 | 6.514231e-52 | -8.615850e-47 |
| Msa0331450 | Msa1248300 | 0.801347 | 9.400907e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0331450 | MtrunA17_Chr2g0279841 | 42.553 | 235 | 133 | 2 | 4 | 238 | 51 | 283 | 7.95e-62 | 196 |
| Msa0331450 | MtrunA17_Chr3g0102191 | 41.102 | 236 | 139 | 0 | 2 | 237 | 49 | 284 | 7.11e-58 | 186 |
| Msa0331450 | MtrunA17_Chr1g0196291 | 42.718 | 103 | 58 | 1 | 60 | 162 | 6 | 107 | 2.26e-22 | 88.6 |
| Msa0331450 | MtrunA17_Chr1g0162271 | 43.548 | 62 | 35 | 0 | 101 | 162 | 36 | 97 | 6.70e-13 | 63.2 |
| Msa0331450 | MtrunA17_Chr7g0266351 | 26.601 | 203 | 145 | 4 | 41 | 239 | 7 | 209 | 8.86e-12 | 62.8 |
| Msa0331450 | MtrunA17_Chr3g0089751 | 41.538 | 65 | 36 | 1 | 105 | 167 | 3 | 67 | 9.34e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTCCCTTGTATTAATTC+TGG | 0.236184 | 2_4:-47180076 | Msa0331450:CDS |
| GTACTACTTTGTGGAAAATC+TGG | 0.304023 | 2_4:-47180687 | Msa0331450:CDS |
| AATAAGACCCATCCAAGTTT+TGG | 0.321597 | 2_4:+47180114 | None:intergenic |
| ATGGGTCTTATTCCCAAGTA+TGG | 0.324377 | 2_4:-47180103 | Msa0331450:CDS |
| TTGCTGTCATATTTATTAGT+AGG | 0.347960 | 2_4:-47180189 | Msa0331450:CDS |
| CCGGCTTCTGCTGTTTAAAC+AGG | 0.360330 | 2_4:+47180647 | None:intergenic |
| GCAAGGGCTTCAGCTGTTGC+TGG | 0.375840 | 2_4:+47180376 | None:intergenic |
| ACTGAAGCTGGACCGTGTTT+TGG | 0.395106 | 2_4:-47180323 | Msa0331450:CDS |
| TGTCACTGCAGCTGATGGCC+TGG | 0.406462 | 2_4:-47180617 | Msa0331450:CDS |
| CATTCGCTGGTCTTTGCAGA+AGG | 0.415543 | 2_4:-47180353 | Msa0331450:CDS |
| TATTCATGTCCCTGCTGAAC+TGG | 0.423300 | 2_4:-47180773 | Msa0331450:CDS |
| AGGGAGGTCAACTCCATACT+TGG | 0.428160 | 2_4:+47180090 | None:intergenic |
| TCTGCTGTTTAAACAGGCAT+TGG | 0.430573 | 2_4:+47180653 | None:intergenic |
| CCCCATGTCACTGCAGCTGA+TGG | 0.439220 | 2_4:-47180622 | Msa0331450:CDS |
| TAGATGCCCACCATATGGTT+GGG | 0.439343 | 2_4:-47180156 | Msa0331450:CDS |
| CTGAACTGGATGTGAATGAT+TGG | 0.441750 | 2_4:-47180759 | Msa0331450:CDS |
| ATATAGTTGGCTCCAAAACT+TGG | 0.452413 | 2_4:-47180126 | Msa0331450:CDS |
| TGTGGAAAATCTGGTTTGCT+AGG | 0.461663 | 2_4:-47180678 | Msa0331450:CDS |
| TCATTCACATCCAGTTCAGC+AGG | 0.469937 | 2_4:+47180763 | None:intergenic |
| CTGAAGCCCTTGCCATTCGC+TGG | 0.472829 | 2_4:-47180366 | Msa0331450:CDS |
| CTAATATCACCTCATCTGCT+TGG | 0.478197 | 2_4:+47180431 | None:intergenic |
| GAAGGCGCAGGAACTGAAGC+TGG | 0.479840 | 2_4:-47180335 | Msa0331450:CDS |
| GAATCTAGATGCCCACCATA+TGG | 0.482396 | 2_4:-47180161 | Msa0331450:CDS |
| GGCCATCAGCTGCAGTGACA+TGG | 0.489315 | 2_4:+47180620 | None:intergenic |
| CTGGTCTTTGCAGAAGGCGC+AGG | 0.490799 | 2_4:-47180347 | Msa0331450:CDS |
| TGATGGCCTGGACTTTGTGT+TGG | 0.503351 | 2_4:-47180605 | Msa0331450:CDS |
| TACTATACTTTCTCTGTCAC+AGG | 0.504955 | 2_4:+47180405 | None:intergenic |
| GCCATCAGCTGCAGTGACAT+GGG | 0.505399 | 2_4:+47180621 | None:intergenic |
| TGAGAATGGAACAGTAGCAC+TGG | 0.507723 | 2_4:-47180470 | Msa0331450:CDS |
| GCTGCAGTGACATGGGGCAC+CGG | 0.508062 | 2_4:+47180628 | None:intergenic |
| AATGTCATTCAAGTTGATGC+TGG | 0.514803 | 2_4:-47180499 | Msa0331450:CDS |
| TATTACCTACCCCAACCATA+TGG | 0.517454 | 2_4:+47180146 | None:intergenic |
| AATCAGAAACTATAGGTTCA+AGG | 0.523522 | 2_4:+47180242 | None:intergenic |
| AGTTGGCTCCAAAACTTGGA+TGG | 0.525223 | 2_4:-47180122 | Msa0331450:CDS |
| AGCTTACAATCAGAAACTAT+AGG | 0.527450 | 2_4:+47180235 | None:intergenic |
| GTCTGATGCACTTGTTGTGG+TGG | 0.533161 | 2_4:-47180296 | Msa0331450:CDS |
| CTAGATGCCCACCATATGGT+TGG | 0.558114 | 2_4:-47180157 | Msa0331450:CDS |
| GATGCTGGATGTTATGAGAA+TGG | 0.559202 | 2_4:-47180484 | Msa0331450:CDS |
| CCTGTTTAAACAGCAGAAGC+CGG | 0.564693 | 2_4:-47180647 | Msa0331450:CDS |
| GTTGGGGTAGGTAATATAGT+TGG | 0.566888 | 2_4:-47180139 | Msa0331450:CDS |
| CAAAGACCAGCGAATGGCAA+GGG | 0.572342 | 2_4:+47180360 | None:intergenic |
| TGAATTCCAACACAAAGTCC+AGG | 0.574489 | 2_4:+47180599 | None:intergenic |
| GTTGGCTCCAAAACTTGGAT+GGG | 0.582916 | 2_4:-47180121 | Msa0331450:CDS |
| TACCTACCCCAACCATATGG+TGG | 0.584075 | 2_4:+47180149 | None:intergenic |
| ACATTAAAGCCACGATACAC+AGG | 0.584125 | 2_4:+47180517 | None:intergenic |
| AGATGCCCACCATATGGTTG+GGG | 0.589068 | 2_4:-47180155 | Msa0331450:CDS |
| ACCTACCCCAACCATATGGT+GGG | 0.589117 | 2_4:+47180150 | None:intergenic |
| GCAAAGACCAGCGAATGGCA+AGG | 0.595920 | 2_4:+47180359 | None:intergenic |
| AAAACACCAGAATTAATACA+AGG | 0.598158 | 2_4:+47180070 | None:intergenic |
| CAGAGAAATTAATATCATTG+AGG | 0.612478 | 2_4:+47180269 | None:intergenic |
| AGCAGGGACATGAATACCAA+GGG | 0.615810 | 2_4:+47180780 | None:intergenic |
| GGGAGGTCAACTCCATACTT+GGG | 0.624645 | 2_4:+47180091 | None:intergenic |
| CTTCTGCAAAGACCAGCGAA+TGG | 0.624775 | 2_4:+47180354 | None:intergenic |
| CCATCAGCTGCAGTGACATG+GGG | 0.625421 | 2_4:+47180622 | None:intergenic |
| GCCCACCATATGGTTGGGGT+AGG | 0.649987 | 2_4:-47180151 | Msa0331450:CDS |
| GCAGTCTGATGCACTTGTTG+TGG | 0.654256 | 2_4:-47180299 | Msa0331450:CDS |
| GTTAACGAGCCTGTGTATCG+TGG | 0.657373 | 2_4:-47180526 | Msa0331450:CDS |
| GAGAATGGAACAGTAGCACT+GGG | 0.663612 | 2_4:-47180469 | Msa0331450:CDS |
| CAGCAGGGACATGAATACCA+AGG | 0.668482 | 2_4:+47180779 | None:intergenic |
| CATCAGACTGCACCAAAACA+CGG | 0.672988 | 2_4:+47180311 | None:intergenic |
| CACCAGAATTAATACAAGGG+AGG | 0.674189 | 2_4:+47180074 | None:intergenic |
| AAACACCAGAATTAATACAA+GGG | 0.685999 | 2_4:+47180071 | None:intergenic |
| CATTCACATCCAGTTCAGCA+GGG | 0.687435 | 2_4:+47180764 | None:intergenic |
| AGGGACATGAATACCAAGGG+GGG | 0.702706 | 2_4:+47180783 | None:intergenic |
| GCAGGGACATGAATACCAAG+GGG | 0.719763 | 2_4:+47180781 | None:intergenic |
| CAGGGACATGAATACCAAGG+GGG | 0.747589 | 2_4:+47180782 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATCATTTTGCTACTC+AGG | - | chr2_4:47180146-47180165 | Msa0331450:CDS | 25.0% |
| ! | CAGAGAAATTAATATCATTG+AGG | + | chr2_4:47180596-47180615 | None:intergenic | 25.0% |
| ! | TTGCTGTCATATTTATTAGT+AGG | - | chr2_4:47180673-47180692 | Msa0331450:CDS | 25.0% |
| ! | AAACACCAGAATTAATACAA+GGG | + | chr2_4:47180794-47180813 | None:intergenic | 25.0% |
| ! | AAAACACCAGAATTAATACA+AGG | + | chr2_4:47180795-47180814 | None:intergenic | 25.0% |
| !! | TAAAAATCATTTTGCTACTC+AGG | - | chr2_4:47180146-47180165 | Msa0331450:CDS | 25.0% |
| ! | CAGAGAAATTAATATCATTG+AGG | + | chr2_4:47180596-47180615 | None:intergenic | 25.0% |
| ! | TTGCTGTCATATTTATTAGT+AGG | - | chr2_4:47180673-47180692 | Msa0331450:CDS | 25.0% |
| ! | AAACACCAGAATTAATACAA+GGG | + | chr2_4:47180794-47180813 | None:intergenic | 25.0% |
| ! | AAAACACCAGAATTAATACA+AGG | + | chr2_4:47180795-47180814 | None:intergenic | 25.0% |
| !!! | GTCTAAGGACTTTTTTACAA+GGG | + | chr2_4:47180299-47180318 | None:intergenic | 30.0% |
| !!! | TGTCTAAGGACTTTTTTACA+AGG | + | chr2_4:47180300-47180319 | None:intergenic | 30.0% |
| AATCAGAAACTATAGGTTCA+AGG | + | chr2_4:47180623-47180642 | None:intergenic | 30.0% | |
| AGCTTACAATCAGAAACTAT+AGG | + | chr2_4:47180630-47180649 | None:intergenic | 30.0% | |
| !!! | GTCTAAGGACTTTTTTACAA+GGG | + | chr2_4:47180299-47180318 | None:intergenic | 30.0% |
| !!! | TGTCTAAGGACTTTTTTACA+AGG | + | chr2_4:47180300-47180319 | None:intergenic | 30.0% |
| AATCAGAAACTATAGGTTCA+AGG | + | chr2_4:47180623-47180642 | None:intergenic | 30.0% | |
| AGCTTACAATCAGAAACTAT+AGG | + | chr2_4:47180630-47180649 | None:intergenic | 30.0% | |
| !!! | TGAATGATTGGCTTTTACAC+TGG | - | chr2_4:47180115-47180134 | Msa0331450:CDS | 35.0% |
| ! | AGGTCTTTTGTACTACTTTG+TGG | - | chr2_4:47180166-47180185 | Msa0331450:CDS | 35.0% |
| GTACTACTTTGTGGAAAATC+TGG | - | chr2_4:47180175-47180194 | Msa0331450:CDS | 35.0% | |
| !! | AATGTCATTCAAGTTGATGC+TGG | - | chr2_4:47180363-47180382 | Msa0331450:CDS | 35.0% |
| CATTAAAAACCAAGCAGATG+AGG | - | chr2_4:47180422-47180441 | Msa0331450:CDS | 35.0% | |
| TACTATACTTTCTCTGTCAC+AGG | + | chr2_4:47180460-47180479 | None:intergenic | 35.0% | |
| ! | ATATAGTTGGCTCCAAAACT+TGG | - | chr2_4:47180736-47180755 | Msa0331450:CDS | 35.0% |
| ! | AATAAGACCCATCCAAGTTT+TGG | + | chr2_4:47180751-47180770 | None:intergenic | 35.0% |
| !!! | TGAATGATTGGCTTTTACAC+TGG | - | chr2_4:47180115-47180134 | Msa0331450:CDS | 35.0% |
| ! | AGGTCTTTTGTACTACTTTG+TGG | - | chr2_4:47180166-47180185 | Msa0331450:CDS | 35.0% |
| GTACTACTTTGTGGAAAATC+TGG | - | chr2_4:47180175-47180194 | Msa0331450:CDS | 35.0% | |
| !! | AATGTCATTCAAGTTGATGC+TGG | - | chr2_4:47180363-47180382 | Msa0331450:CDS | 35.0% |
| CATTAAAAACCAAGCAGATG+AGG | - | chr2_4:47180422-47180441 | Msa0331450:CDS | 35.0% | |
| TACTATACTTTCTCTGTCAC+AGG | + | chr2_4:47180460-47180479 | None:intergenic | 35.0% | |
| ! | ATATAGTTGGCTCCAAAACT+TGG | - | chr2_4:47180736-47180755 | Msa0331450:CDS | 35.0% |
| ! | AATAAGACCCATCCAAGTTT+TGG | + | chr2_4:47180751-47180770 | None:intergenic | 35.0% |
| CTGAACTGGATGTGAATGAT+TGG | - | chr2_4:47180103-47180122 | Msa0331450:CDS | 40.0% | |
| !! | TGTGGAAAATCTGGTTTGCT+AGG | - | chr2_4:47180184-47180203 | Msa0331450:CDS | 40.0% |
| ! | TCTGCTGTTTAAACAGGCAT+TGG | + | chr2_4:47180212-47180231 | None:intergenic | 40.0% |
| TGAATTCCAACACAAAGTCC+AGG | + | chr2_4:47180266-47180285 | None:intergenic | 40.0% | |
| !!! | CAGAAGTGTTTTGCTGTCTA+AGG | + | chr2_4:47180314-47180333 | None:intergenic | 40.0% |
| ACATTAAAGCCACGATACAC+AGG | + | chr2_4:47180348-47180367 | None:intergenic | 40.0% | |
| GATGCTGGATGTTATGAGAA+TGG | - | chr2_4:47180378-47180397 | Msa0331450:CDS | 40.0% | |
| CTAATATCACCTCATCTGCT+TGG | + | chr2_4:47180434-47180453 | None:intergenic | 40.0% | |
| TATTACCTACCCCAACCATA+TGG | + | chr2_4:47180719-47180738 | None:intergenic | 40.0% | |
| GTTGGGGTAGGTAATATAGT+TGG | - | chr2_4:47180723-47180742 | Msa0331450:CDS | 40.0% | |
| !! | ATGGGTCTTATTCCCAAGTA+TGG | - | chr2_4:47180759-47180778 | Msa0331450:CDS | 40.0% |
| GACCTCCCTTGTATTAATTC+TGG | - | chr2_4:47180786-47180805 | Msa0331450:CDS | 40.0% | |
| CACCAGAATTAATACAAGGG+AGG | + | chr2_4:47180791-47180810 | None:intergenic | 40.0% | |
| CTGAACTGGATGTGAATGAT+TGG | - | chr2_4:47180103-47180122 | Msa0331450:CDS | 40.0% | |
| !! | TGTGGAAAATCTGGTTTGCT+AGG | - | chr2_4:47180184-47180203 | Msa0331450:CDS | 40.0% |
| ! | TCTGCTGTTTAAACAGGCAT+TGG | + | chr2_4:47180212-47180231 | None:intergenic | 40.0% |
| TGAATTCCAACACAAAGTCC+AGG | + | chr2_4:47180266-47180285 | None:intergenic | 40.0% | |
| !!! | CAGAAGTGTTTTGCTGTCTA+AGG | + | chr2_4:47180314-47180333 | None:intergenic | 40.0% |
| ACATTAAAGCCACGATACAC+AGG | + | chr2_4:47180348-47180367 | None:intergenic | 40.0% | |
| GATGCTGGATGTTATGAGAA+TGG | - | chr2_4:47180378-47180397 | Msa0331450:CDS | 40.0% | |
| CTAATATCACCTCATCTGCT+TGG | + | chr2_4:47180434-47180453 | None:intergenic | 40.0% | |
| TATTACCTACCCCAACCATA+TGG | + | chr2_4:47180719-47180738 | None:intergenic | 40.0% | |
| GTTGGGGTAGGTAATATAGT+TGG | - | chr2_4:47180723-47180742 | Msa0331450:CDS | 40.0% | |
| !! | ATGGGTCTTATTCCCAAGTA+TGG | - | chr2_4:47180759-47180778 | Msa0331450:CDS | 40.0% |
| GACCTCCCTTGTATTAATTC+TGG | - | chr2_4:47180786-47180805 | Msa0331450:CDS | 40.0% | |
| CACCAGAATTAATACAAGGG+AGG | + | chr2_4:47180791-47180810 | None:intergenic | 40.0% | |
| AGCAGGGACATGAATACCAA+GGG | + | chr2_4:47180085-47180104 | None:intergenic | 45.0% | |
| TATTCATGTCCCTGCTGAAC+TGG | - | chr2_4:47180089-47180108 | Msa0331450:CDS | 45.0% | |
| CATTCACATCCAGTTCAGCA+GGG | + | chr2_4:47180101-47180120 | None:intergenic | 45.0% | |
| TCATTCACATCCAGTTCAGC+AGG | + | chr2_4:47180102-47180121 | None:intergenic | 45.0% | |
| CCTGTTTAAACAGCAGAAGC+CGG | - | chr2_4:47180215-47180234 | Msa0331450:CDS | 45.0% | |
| TGAGAATGGAACAGTAGCAC+TGG | - | chr2_4:47180392-47180411 | Msa0331450:CDS | 45.0% | |
| GAGAATGGAACAGTAGCACT+GGG | - | chr2_4:47180393-47180412 | Msa0331450:CDS | 45.0% | |
| CATCAGACTGCACCAAAACA+CGG | + | chr2_4:47180554-47180573 | None:intergenic | 45.0% | |
| GAATCTAGATGCCCACCATA+TGG | - | chr2_4:47180701-47180720 | Msa0331450:CDS | 45.0% | |
| TAGATGCCCACCATATGGTT+GGG | - | chr2_4:47180706-47180725 | Msa0331450:CDS | 45.0% | |
| ! | AGTTGGCTCCAAAACTTGGA+TGG | - | chr2_4:47180740-47180759 | Msa0331450:CDS | 45.0% |
| ! | GTTGGCTCCAAAACTTGGAT+GGG | - | chr2_4:47180741-47180760 | Msa0331450:CDS | 45.0% |
| AGCAGGGACATGAATACCAA+GGG | + | chr2_4:47180085-47180104 | None:intergenic | 45.0% | |
| TATTCATGTCCCTGCTGAAC+TGG | - | chr2_4:47180089-47180108 | Msa0331450:CDS | 45.0% | |
| CATTCACATCCAGTTCAGCA+GGG | + | chr2_4:47180101-47180120 | None:intergenic | 45.0% | |
| TCATTCACATCCAGTTCAGC+AGG | + | chr2_4:47180102-47180121 | None:intergenic | 45.0% | |
| CCTGTTTAAACAGCAGAAGC+CGG | - | chr2_4:47180215-47180234 | Msa0331450:CDS | 45.0% | |
| TGAGAATGGAACAGTAGCAC+TGG | - | chr2_4:47180392-47180411 | Msa0331450:CDS | 45.0% | |
| GAGAATGGAACAGTAGCACT+GGG | - | chr2_4:47180393-47180412 | Msa0331450:CDS | 45.0% | |
| CATCAGACTGCACCAAAACA+CGG | + | chr2_4:47180554-47180573 | None:intergenic | 45.0% | |
| GAATCTAGATGCCCACCATA+TGG | - | chr2_4:47180701-47180720 | Msa0331450:CDS | 45.0% | |
| TAGATGCCCACCATATGGTT+GGG | - | chr2_4:47180706-47180725 | Msa0331450:CDS | 45.0% | |
| ! | AGTTGGCTCCAAAACTTGGA+TGG | - | chr2_4:47180740-47180759 | Msa0331450:CDS | 45.0% |
| ! | GTTGGCTCCAAAACTTGGAT+GGG | - | chr2_4:47180741-47180760 | Msa0331450:CDS | 45.0% |
| AGGGACATGAATACCAAGGG+GGG | + | chr2_4:47180082-47180101 | None:intergenic | 50.0% | |
| CAGGGACATGAATACCAAGG+GGG | + | chr2_4:47180083-47180102 | None:intergenic | 50.0% | |
| GCAGGGACATGAATACCAAG+GGG | + | chr2_4:47180084-47180103 | None:intergenic | 50.0% | |
| CAGCAGGGACATGAATACCA+AGG | + | chr2_4:47180086-47180105 | None:intergenic | 50.0% | |
| ! | CCGGCTTCTGCTGTTTAAAC+AGG | + | chr2_4:47180218-47180237 | None:intergenic | 50.0% |
| TGATGGCCTGGACTTTGTGT+TGG | - | chr2_4:47180257-47180276 | Msa0331450:CDS | 50.0% | |
| GTTAACGAGCCTGTGTATCG+TGG | - | chr2_4:47180336-47180355 | Msa0331450:CDS | 50.0% | |
| CAAAGACCAGCGAATGGCAA+GGG | + | chr2_4:47180505-47180524 | None:intergenic | 50.0% | |
| CTTCTGCAAAGACCAGCGAA+TGG | + | chr2_4:47180511-47180530 | None:intergenic | 50.0% | |
| !! | CATTCGCTGGTCTTTGCAGA+AGG | - | chr2_4:47180509-47180528 | Msa0331450:CDS | 50.0% |
| ! | ACTGAAGCTGGACCGTGTTT+TGG | - | chr2_4:47180539-47180558 | Msa0331450:CDS | 50.0% |
| ! | GCAGTCTGATGCACTTGTTG+TGG | - | chr2_4:47180563-47180582 | Msa0331450:CDS | 50.0% |
| !! | GTCTGATGCACTTGTTGTGG+TGG | - | chr2_4:47180566-47180585 | Msa0331450:CDS | 50.0% |
| CTAGATGCCCACCATATGGT+TGG | - | chr2_4:47180705-47180724 | Msa0331450:CDS | 50.0% | |
| AGATGCCCACCATATGGTTG+GGG | - | chr2_4:47180707-47180726 | Msa0331450:CDS | 50.0% | |
| ACCTACCCCAACCATATGGT+GGG | + | chr2_4:47180715-47180734 | None:intergenic | 50.0% | |
| TACCTACCCCAACCATATGG+TGG | + | chr2_4:47180716-47180735 | None:intergenic | 50.0% | |
| GGGAGGTCAACTCCATACTT+GGG | + | chr2_4:47180774-47180793 | None:intergenic | 50.0% | |
| AGGGAGGTCAACTCCATACT+TGG | + | chr2_4:47180775-47180794 | None:intergenic | 50.0% | |
| AGGGACATGAATACCAAGGG+GGG | + | chr2_4:47180082-47180101 | None:intergenic | 50.0% | |
| CAGGGACATGAATACCAAGG+GGG | + | chr2_4:47180083-47180102 | None:intergenic | 50.0% | |
| GCAGGGACATGAATACCAAG+GGG | + | chr2_4:47180084-47180103 | None:intergenic | 50.0% | |
| CAGCAGGGACATGAATACCA+AGG | + | chr2_4:47180086-47180105 | None:intergenic | 50.0% | |
| ! | CCGGCTTCTGCTGTTTAAAC+AGG | + | chr2_4:47180218-47180237 | None:intergenic | 50.0% |
| TGATGGCCTGGACTTTGTGT+TGG | - | chr2_4:47180257-47180276 | Msa0331450:CDS | 50.0% | |
| GTTAACGAGCCTGTGTATCG+TGG | - | chr2_4:47180336-47180355 | Msa0331450:CDS | 50.0% | |
| CAAAGACCAGCGAATGGCAA+GGG | + | chr2_4:47180505-47180524 | None:intergenic | 50.0% | |
| CTTCTGCAAAGACCAGCGAA+TGG | + | chr2_4:47180511-47180530 | None:intergenic | 50.0% | |
| !! | CATTCGCTGGTCTTTGCAGA+AGG | - | chr2_4:47180509-47180528 | Msa0331450:CDS | 50.0% |
| ! | ACTGAAGCTGGACCGTGTTT+TGG | - | chr2_4:47180539-47180558 | Msa0331450:CDS | 50.0% |
| ! | GCAGTCTGATGCACTTGTTG+TGG | - | chr2_4:47180563-47180582 | Msa0331450:CDS | 50.0% |
| !! | GTCTGATGCACTTGTTGTGG+TGG | - | chr2_4:47180566-47180585 | Msa0331450:CDS | 50.0% |
| CTAGATGCCCACCATATGGT+TGG | - | chr2_4:47180705-47180724 | Msa0331450:CDS | 50.0% | |
| AGATGCCCACCATATGGTTG+GGG | - | chr2_4:47180707-47180726 | Msa0331450:CDS | 50.0% | |
| ACCTACCCCAACCATATGGT+GGG | + | chr2_4:47180715-47180734 | None:intergenic | 50.0% | |
| TACCTACCCCAACCATATGG+TGG | + | chr2_4:47180716-47180735 | None:intergenic | 50.0% | |
| GGGAGGTCAACTCCATACTT+GGG | + | chr2_4:47180774-47180793 | None:intergenic | 50.0% | |
| AGGGAGGTCAACTCCATACT+TGG | + | chr2_4:47180775-47180794 | None:intergenic | 50.0% | |
| GTATGGTTCTCTTCCCCCCT+TGG | - | chr2_4:47180066-47180085 | Msa0331450:CDS | 55.0% | |
| CCATCAGCTGCAGTGACATG+GGG | + | chr2_4:47180243-47180262 | None:intergenic | 55.0% | |
| GCCATCAGCTGCAGTGACAT+GGG | + | chr2_4:47180244-47180263 | None:intergenic | 55.0% | |
| GCAAAGACCAGCGAATGGCA+AGG | + | chr2_4:47180506-47180525 | None:intergenic | 55.0% | |
| GTATGGTTCTCTTCCCCCCT+TGG | - | chr2_4:47180066-47180085 | Msa0331450:CDS | 55.0% | |
| CCATCAGCTGCAGTGACATG+GGG | + | chr2_4:47180243-47180262 | None:intergenic | 55.0% | |
| GCCATCAGCTGCAGTGACAT+GGG | + | chr2_4:47180244-47180263 | None:intergenic | 55.0% | |
| GCAAAGACCAGCGAATGGCA+AGG | + | chr2_4:47180506-47180525 | None:intergenic | 55.0% | |
| CCCCATGTCACTGCAGCTGA+TGG | - | chr2_4:47180240-47180259 | Msa0331450:CDS | 60.0% | |
| GGCCATCAGCTGCAGTGACA+TGG | + | chr2_4:47180245-47180264 | None:intergenic | 60.0% | |
| TGTCACTGCAGCTGATGGCC+TGG | - | chr2_4:47180245-47180264 | Msa0331450:CDS | 60.0% | |
| GCAAGGGCTTCAGCTGTTGC+TGG | + | chr2_4:47180489-47180508 | None:intergenic | 60.0% | |
| CTGAAGCCCTTGCCATTCGC+TGG | - | chr2_4:47180496-47180515 | Msa0331450:CDS | 60.0% | |
| ! | CTGGTCTTTGCAGAAGGCGC+AGG | - | chr2_4:47180515-47180534 | Msa0331450:CDS | 60.0% |
| ! | GAAGGCGCAGGAACTGAAGC+TGG | - | chr2_4:47180527-47180546 | Msa0331450:CDS | 60.0% |
| GCCCACCATATGGTTGGGGT+AGG | - | chr2_4:47180711-47180730 | Msa0331450:CDS | 60.0% | |
| CCCCATGTCACTGCAGCTGA+TGG | - | chr2_4:47180240-47180259 | Msa0331450:CDS | 60.0% | |
| GGCCATCAGCTGCAGTGACA+TGG | + | chr2_4:47180245-47180264 | None:intergenic | 60.0% | |
| TGTCACTGCAGCTGATGGCC+TGG | - | chr2_4:47180245-47180264 | Msa0331450:CDS | 60.0% | |
| GCAAGGGCTTCAGCTGTTGC+TGG | + | chr2_4:47180489-47180508 | None:intergenic | 60.0% | |
| CTGAAGCCCTTGCCATTCGC+TGG | - | chr2_4:47180496-47180515 | Msa0331450:CDS | 60.0% | |
| ! | CTGGTCTTTGCAGAAGGCGC+AGG | - | chr2_4:47180515-47180534 | Msa0331450:CDS | 60.0% |
| ! | GAAGGCGCAGGAACTGAAGC+TGG | - | chr2_4:47180527-47180546 | Msa0331450:CDS | 60.0% |
| GCCCACCATATGGTTGGGGT+AGG | - | chr2_4:47180711-47180730 | Msa0331450:CDS | 60.0% | |
| GCTGCAGTGACATGGGGCAC+CGG | + | chr2_4:47180237-47180256 | None:intergenic | 65.0% | |
| GCTGCAGTGACATGGGGCAC+CGG | + | chr2_4:47180237-47180256 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 47180063 | 47180821 | 47180063 | ID=Msa0331450;Name=Msa0331450 |
| chr2_4 | mRNA | 47180063 | 47180821 | 47180063 | ID=Msa0331450-mRNA-1;Parent=Msa0331450;Name=Msa0331450-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|252 |
| chr2_4 | exon | 47180063 | 47180821 | 47180063 | ID=Msa0331450-mRNA-1:exon:14238;Parent=Msa0331450-mRNA-1 |
| chr2_4 | CDS | 47180063 | 47180821 | 47180063 | ID=Msa0331450-mRNA-1:cds;Parent=Msa0331450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
