Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191840 | XP_024636184.2 | 90.270 | 185 | 15 | 1 | 14 | 195 | 1 | 185 | 3.74e-114 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191840 | A0A2K3JN45 | 68.342 | 199 | 57 | 3 | 1 | 195 | 35 | 231 | 4.20e-79 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa0191840 | 0.808757 | 2.647163e-50 | -8.615850e-47 |
| Msa0110260 | Msa0191840 | 0.801171 | 1.021261e-48 | -8.615850e-47 |
| Msa0191840 | Msa0331450 | 0.804165 | 2.462162e-49 | -8.615850e-47 |
| Msa0191840 | Msa0900980 | 0.812064 | 5.117250e-51 | -8.615850e-47 |
| Msa0191840 | Msa0967280 | 0.811733 | 6.038825e-51 | -8.615850e-47 |
| Msa0191840 | Msa0998680 | 0.803419 | 3.517619e-49 | -8.615850e-47 |
| Msa0191840 | Msa1054020 | 0.868917 | 4.570256e-66 | -8.615850e-47 |
| Msa0191840 | Msa1241130 | -0.821348 | 4.236341e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191840 | MtrunA17_Chr2g0325841 | 50.952 | 210 | 85 | 5 | 1 | 195 | 800 | 1006 | 2.27e-61 | 206 |
| Msa0191840 | MtrunA17_Chr4g0010671 | 48.810 | 168 | 66 | 5 | 1 | 158 | 310 | 467 | 1.72e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAACATGTTGGGAAATT+TGG | 0.085053 | 2_1:-7512040 | None:intergenic |
| CCTCCCAACAAGAGATATTA+TGG | 0.232167 | 2_1:+7513320 | Msa0191840:CDS |
| ACATATAATTCACACTCTTC+TGG | 0.254643 | 2_1:-7512142 | None:intergenic |
| TATGCGTCTAGTTTCTAATA+AGG | 0.273911 | 2_1:+7512366 | Msa0191840:CDS |
| CATAATAAGCTGTTAGAAAA+TGG | 0.284504 | 2_1:+7512223 | Msa0191840:CDS |
| GAGAACATGTTGGGAAATTT+GGG | 0.303343 | 2_1:-7512039 | None:intergenic |
| TTCTAACAGCTTATTATGTA+TGG | 0.333876 | 2_1:-7512218 | None:intergenic |
| GCGGGATTTATCATCTATTC+CGG | 0.359802 | 2_1:+7512000 | Msa0191840:CDS |
| CATATAATTCACACTCTTCT+GGG | 0.400238 | 2_1:-7512141 | None:intergenic |
| TGTCACCTCATCTGTGGGCA+TGG | 0.403135 | 2_1:-7512296 | None:intergenic |
| CCCTCAACACTTTCATTCAA+TGG | 0.409637 | 2_1:+7512332 | Msa0191840:CDS |
| GTCACCTCATCTGTGGGCAT+GGG | 0.412439 | 2_1:-7512295 | None:intergenic |
| CATTGAAAAGTTGATGTTAA+GGG | 0.416482 | 2_1:+7513242 | Msa0191840:CDS |
| GCATTGAAAAGTTGATGTTA+AGG | 0.433322 | 2_1:+7513241 | Msa0191840:CDS |
| CAGACCTGACTAAGGAGATC+AGG | 0.446729 | 2_1:+7511966 | Msa0191840:CDS |
| AACTCCATAATATCTCTTGT+TGG | 0.458167 | 2_1:-7513324 | None:intergenic |
| GATCCCTGATCTCCTTAGTC+AGG | 0.462362 | 2_1:-7511970 | None:intergenic |
| CTTGCAGGTATATCGGTACT+AGG | 0.462675 | 2_1:-7512061 | None:intergenic |
| TCATCATCATCCTCTGGTAT+AGG | 0.466265 | 2_1:-7512112 | None:intergenic |
| ACTCCATAATATCTCTTGTT+GGG | 0.480185 | 2_1:-7513323 | None:intergenic |
| ATGTCCTCATCATCATCCTC+TGG | 0.493045 | 2_1:-7512118 | None:intergenic |
| CGGTACTAGGAGAACATGTT+GGG | 0.495155 | 2_1:-7512048 | None:intergenic |
| AACAGCTTATTATGTATGGT+TGG | 0.498505 | 2_1:-7512214 | None:intergenic |
| GATATACCTGCAAGCACAAA+AGG | 0.504357 | 2_1:+7512070 | Msa0191840:CDS |
| ACCTTTGTCACCTCATCTGT+GGG | 0.504424 | 2_1:-7512301 | None:intergenic |
| CATGAAAGCAGACCTGACTA+AGG | 0.506146 | 2_1:+7511958 | None:intergenic |
| TCGGTACTAGGAGAACATGT+TGG | 0.515851 | 2_1:-7512049 | None:intergenic |
| TCATTCAAATCGAACTTCAC+AGG | 0.517008 | 2_1:-7513282 | None:intergenic |
| AAGATGATCTTCCATCCAAA+AGG | 0.520107 | 2_1:+7513199 | Msa0191840:CDS |
| TCACCTCATCTGTGGGCATG+GGG | 0.520539 | 2_1:-7512294 | None:intergenic |
| CCATTGAATGAAAGTGTTGA+GGG | 0.526005 | 2_1:-7512332 | None:intergenic |
| AACCTTTGTCACCTCATCTG+TGG | 0.529223 | 2_1:-7512302 | None:intergenic |
| GATCAGGGATCAAGTGATGC+GGG | 0.557898 | 2_1:+7511982 | Msa0191840:CDS |
| TAAGCTGTTAGAAAATGGTA+TGG | 0.563206 | 2_1:+7512228 | Msa0191840:CDS |
| ACAGATGAGGTGACAAAGGT+TGG | 0.570661 | 2_1:+7512304 | Msa0191840:CDS |
| GGGAAATGTTGAGAGAAAGC+CGG | 0.574648 | 2_1:-7512019 | None:intergenic |
| GCCATTGAATGAAAGTGTTG+AGG | 0.582439 | 2_1:-7512333 | None:intergenic |
| AGACCTGACTAAGGAGATCA+GGG | 0.596835 | 2_1:+7511967 | Msa0191840:CDS |
| AGTCCCCATGCCCACAGATG+AGG | 0.605255 | 2_1:+7512291 | Msa0191840:CDS |
| GCCCACAGATGAGGTGACAA+AGG | 0.615741 | 2_1:+7512300 | Msa0191840:CDS |
| AGAAAATGGTATGGTGAGGG+TGG | 0.621632 | 2_1:+7512237 | Msa0191840:CDS |
| TCATCATCCTCTGGTATAGG+CGG | 0.624833 | 2_1:-7512109 | None:intergenic |
| AGATCAGGGATCAAGTGATG+CGG | 0.639256 | 2_1:+7511981 | Msa0191840:CDS |
| CCATAATATCTCTTGTTGGG+AGG | 0.640804 | 2_1:-7513320 | None:intergenic |
| TATACCAGAGGATGATGATG+AGG | 0.648051 | 2_1:+7512114 | Msa0191840:CDS |
| TGCAGCGCCGCCTATACCAG+AGG | 0.648332 | 2_1:+7512102 | Msa0191840:CDS |
| GTTAGAAAATGGTATGGTGA+GGG | 0.676123 | 2_1:+7512234 | Msa0191840:CDS |
| TGTTAGAAAATGGTATGGTG+AGG | 0.693673 | 2_1:+7512233 | Msa0191840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTAAATTGTTT+AGG | + | chr2_1:7513158-7513177 | Msa0191840:intron | 10.0% |
| !!! | TATTTTATCTTAAATTGTTT+AGG | + | chr2_1:7513158-7513177 | Msa0191840:intron | 10.0% |
| !! | AAGTTACTAATTCAATATTA+TGG | + | chr2_1:7513097-7513116 | Msa0191840:intron | 15.0% |
| !! | AAGTTACTAATTCAATATTA+TGG | + | chr2_1:7513097-7513116 | Msa0191840:intron | 15.0% |
| !! | ATATGCAAATGTATATAAGT+TGG | + | chr2_1:7512189-7512208 | Msa0191840:intron | 20.0% |
| !! | TATGCAAATGTATATAAGTT+GGG | + | chr2_1:7512190-7512209 | Msa0191840:intron | 20.0% |
| !! | ATCACAAAAAAAAAGTTACA+CGG | - | chr2_1:7512423-7512442 | None:intergenic | 20.0% |
| !! | ATATGCAAATGTATATAAGT+TGG | + | chr2_1:7512189-7512208 | Msa0191840:intron | 20.0% |
| !! | TATGCAAATGTATATAAGTT+GGG | + | chr2_1:7512190-7512209 | Msa0191840:intron | 20.0% |
| !! | ATCACAAAAAAAAAGTTACA+CGG | - | chr2_1:7512423-7512442 | None:intergenic | 20.0% |
| ! | TTCTAACAGCTTATTATGTA+TGG | - | chr2_1:7512221-7512240 | None:intergenic | 25.0% |
| ! | CATAATAAGCTGTTAGAAAA+TGG | + | chr2_1:7512223-7512242 | Msa0191840:CDS | 25.0% |
| ! | AAAAAAAAGTTACACGGAAA+AGG | - | chr2_1:7512417-7512436 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAAATGATAG+AGG | + | chr2_1:7512462-7512481 | Msa0191840:intron | 25.0% |
| ! | AATTCTCTGGTATATAAATG+TGG | + | chr2_1:7512526-7512545 | Msa0191840:intron | 25.0% |
| ! | AGTTGTAATTGGTAAATACT+AGG | + | chr2_1:7512625-7512644 | Msa0191840:intron | 25.0% |
| ! | GTAAATACTAGGTGATAAAA+GGG | + | chr2_1:7512636-7512655 | Msa0191840:intron | 25.0% |
| ! | TAAATACTAGGTGATAAAAG+GGG | + | chr2_1:7512637-7512656 | Msa0191840:intron | 25.0% |
| !!! | TTTTGGGTTTTTCATGTATA+GGG | + | chr2_1:7512863-7512882 | Msa0191840:intron | 25.0% |
| ! | TGAAAAAATACAAACCCATA+AGG | - | chr2_1:7512956-7512975 | None:intergenic | 25.0% |
| ! | TCATCGAATTTCACATAAAA+TGG | - | chr2_1:7512984-7513003 | None:intergenic | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | + | chr2_1:7513242-7513261 | Msa0191840:CDS | 25.0% |
| ! | TTCTAACAGCTTATTATGTA+TGG | - | chr2_1:7512221-7512240 | None:intergenic | 25.0% |
| ! | CATAATAAGCTGTTAGAAAA+TGG | + | chr2_1:7512223-7512242 | Msa0191840:CDS | 25.0% |
| ! | AAAAAAAAGTTACACGGAAA+AGG | - | chr2_1:7512417-7512436 | None:intergenic | 25.0% |
| ! | AGTGATTATCAAAATGATAG+AGG | + | chr2_1:7512462-7512481 | Msa0191840:intron | 25.0% |
| ! | AATTCTCTGGTATATAAATG+TGG | + | chr2_1:7512526-7512545 | Msa0191840:intron | 25.0% |
| ! | AGTTGTAATTGGTAAATACT+AGG | + | chr2_1:7512625-7512644 | Msa0191840:intron | 25.0% |
| ! | GTAAATACTAGGTGATAAAA+GGG | + | chr2_1:7512636-7512655 | Msa0191840:intron | 25.0% |
| ! | TAAATACTAGGTGATAAAAG+GGG | + | chr2_1:7512637-7512656 | Msa0191840:intron | 25.0% |
| !!! | TTTTGGGTTTTTCATGTATA+GGG | + | chr2_1:7512863-7512882 | Msa0191840:intron | 25.0% |
| ! | TGAAAAAATACAAACCCATA+AGG | - | chr2_1:7512956-7512975 | None:intergenic | 25.0% |
| ! | TCATCGAATTTCACATAAAA+TGG | - | chr2_1:7512984-7513003 | None:intergenic | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | + | chr2_1:7513242-7513261 | Msa0191840:CDS | 25.0% |
| CATATAATTCACACTCTTCT+GGG | - | chr2_1:7512144-7512163 | None:intergenic | 30.0% | |
| ACATATAATTCACACTCTTC+TGG | - | chr2_1:7512145-7512164 | None:intergenic | 30.0% | |
| AACAGCTTATTATGTATGGT+TGG | - | chr2_1:7512217-7512236 | None:intergenic | 30.0% | |
| TAAGCTGTTAGAAAATGGTA+TGG | + | chr2_1:7512228-7512247 | Msa0191840:CDS | 30.0% | |
| ! | TATGCGTCTAGTTTCTAATA+AGG | + | chr2_1:7512366-7512385 | Msa0191840:CDS | 30.0% |
| ! | TGTTTTGTCTATGAATTCTC+TGG | + | chr2_1:7512513-7512532 | Msa0191840:intron | 30.0% |
| TGGTATATAAATGTGGTCTA+TGG | + | chr2_1:7512533-7512552 | Msa0191840:intron | 30.0% | |
| AATAGCTTGATTAATACGCA+TGG | + | chr2_1:7512596-7512615 | Msa0191840:intron | 30.0% | |
| GGTAAATACTAGGTGATAAA+AGG | + | chr2_1:7512635-7512654 | Msa0191840:intron | 30.0% | |
| !!! | GCATATTCTGCTTGTTTTTT+TGG | + | chr2_1:7512750-7512769 | Msa0191840:intron | 30.0% |
| !!! | CGTCTCATATTCTGTTTTTT+TGG | + | chr2_1:7512775-7512794 | Msa0191840:intron | 30.0% |
| !!! | CAGGTTTTGTTTTTCTGTTT+CGG | + | chr2_1:7512816-7512835 | Msa0191840:intron | 30.0% |
| !! | TTGTTTTTCTGTTTCGGTTT+AGG | + | chr2_1:7512822-7512841 | Msa0191840:intron | 30.0% |
| TACATGAAAAACCCAAAACT+AGG | - | chr2_1:7512861-7512880 | None:intergenic | 30.0% | |
| !!! | GTTTTGGGTTTTTCATGTAT+AGG | + | chr2_1:7512862-7512881 | Msa0191840:intron | 30.0% |
| CTTGTTTATGTAAGCAAAGA+TGG | + | chr2_1:7513024-7513043 | Msa0191840:intron | 30.0% | |
| TTATGTAAGCAAAGATGGTT+AGG | + | chr2_1:7513029-7513048 | Msa0191840:intron | 30.0% | |
| ! | TTTTCAATGCAGGATTTTTC+AGG | - | chr2_1:7513231-7513250 | None:intergenic | 30.0% |
| ! | TAACATCAACTTTTCAATGC+AGG | - | chr2_1:7513241-7513260 | None:intergenic | 30.0% |
| !! | GCATTGAAAAGTTGATGTTA+AGG | + | chr2_1:7513241-7513260 | Msa0191840:CDS | 30.0% |
| CATATAATTCACACTCTTCT+GGG | - | chr2_1:7512144-7512163 | None:intergenic | 30.0% | |
| ACATATAATTCACACTCTTC+TGG | - | chr2_1:7512145-7512164 | None:intergenic | 30.0% | |
| AACAGCTTATTATGTATGGT+TGG | - | chr2_1:7512217-7512236 | None:intergenic | 30.0% | |
| TAAGCTGTTAGAAAATGGTA+TGG | + | chr2_1:7512228-7512247 | Msa0191840:CDS | 30.0% | |
| ! | TATGCGTCTAGTTTCTAATA+AGG | + | chr2_1:7512366-7512385 | Msa0191840:CDS | 30.0% |
| ! | TGTTTTGTCTATGAATTCTC+TGG | + | chr2_1:7512513-7512532 | Msa0191840:intron | 30.0% |
| TGGTATATAAATGTGGTCTA+TGG | + | chr2_1:7512533-7512552 | Msa0191840:intron | 30.0% | |
| AATAGCTTGATTAATACGCA+TGG | + | chr2_1:7512596-7512615 | Msa0191840:intron | 30.0% | |
| GGTAAATACTAGGTGATAAA+AGG | + | chr2_1:7512635-7512654 | Msa0191840:intron | 30.0% | |
| !!! | GCATATTCTGCTTGTTTTTT+TGG | + | chr2_1:7512750-7512769 | Msa0191840:intron | 30.0% |
| !!! | CGTCTCATATTCTGTTTTTT+TGG | + | chr2_1:7512775-7512794 | Msa0191840:intron | 30.0% |
| !!! | CAGGTTTTGTTTTTCTGTTT+CGG | + | chr2_1:7512816-7512835 | Msa0191840:intron | 30.0% |
| !! | TTGTTTTTCTGTTTCGGTTT+AGG | + | chr2_1:7512822-7512841 | Msa0191840:intron | 30.0% |
| TACATGAAAAACCCAAAACT+AGG | - | chr2_1:7512861-7512880 | None:intergenic | 30.0% | |
| !!! | GTTTTGGGTTTTTCATGTAT+AGG | + | chr2_1:7512862-7512881 | Msa0191840:intron | 30.0% |
| CTTGTTTATGTAAGCAAAGA+TGG | + | chr2_1:7513024-7513043 | Msa0191840:intron | 30.0% | |
| TTATGTAAGCAAAGATGGTT+AGG | + | chr2_1:7513029-7513048 | Msa0191840:intron | 30.0% | |
| ! | TTTTCAATGCAGGATTTTTC+AGG | - | chr2_1:7513231-7513250 | None:intergenic | 30.0% |
| ! | TAACATCAACTTTTCAATGC+AGG | - | chr2_1:7513241-7513260 | None:intergenic | 30.0% |
| !! | GCATTGAAAAGTTGATGTTA+AGG | + | chr2_1:7513241-7513260 | Msa0191840:CDS | 30.0% |
| GAGAACATGTTGGGAAATTT+GGG | - | chr2_1:7512042-7512061 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGCAGGTATAT+CGG | - | chr2_1:7512071-7512090 | None:intergenic | 35.0% |
| TGTTAGAAAATGGTATGGTG+AGG | + | chr2_1:7512233-7512252 | Msa0191840:CDS | 35.0% | |
| GTTAGAAAATGGTATGGTGA+GGG | + | chr2_1:7512234-7512253 | Msa0191840:CDS | 35.0% | |
| !! | CCATTGAATGAAAGTGTTGA+GGG | - | chr2_1:7512335-7512354 | None:intergenic | 35.0% |
| ! | ACTAGACGCATAAGTCTTTT+TGG | - | chr2_1:7512358-7512377 | None:intergenic | 35.0% |
| !! | TTTTGTCTTCTTAGGTACTG+CGG | + | chr2_1:7512562-7512581 | Msa0191840:intron | 35.0% |
| CATGGTTCATGAGTTGTAAT+TGG | + | chr2_1:7512614-7512633 | Msa0191840:intron | 35.0% | |
| !!! | TTCTGTTTTTTTGGATCTGC+TGG | + | chr2_1:7512784-7512803 | Msa0191840:intron | 35.0% |
| ! | TTTTCTGTTTCGGTTTAGGA+AGG | + | chr2_1:7512826-7512845 | Msa0191840:intron | 35.0% |
| TTTCTGTTTCGGTTTAGGAA+GGG | + | chr2_1:7512827-7512846 | Msa0191840:intron | 35.0% | |
| AAGATGATCTTCCATCCAAA+AGG | + | chr2_1:7513199-7513218 | Msa0191840:CDS | 35.0% | |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | - | chr2_1:7513217-7513236 | None:intergenic | 35.0% |
| TCATTCAAATCGAACTTCAC+AGG | - | chr2_1:7513285-7513304 | None:intergenic | 35.0% | |
| GAGAACATGTTGGGAAATTT+GGG | - | chr2_1:7512042-7512061 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGCAGGTATAT+CGG | - | chr2_1:7512071-7512090 | None:intergenic | 35.0% |
| TGTTAGAAAATGGTATGGTG+AGG | + | chr2_1:7512233-7512252 | Msa0191840:CDS | 35.0% | |
| GTTAGAAAATGGTATGGTGA+GGG | + | chr2_1:7512234-7512253 | Msa0191840:CDS | 35.0% | |
| !! | CCATTGAATGAAAGTGTTGA+GGG | - | chr2_1:7512335-7512354 | None:intergenic | 35.0% |
| ! | ACTAGACGCATAAGTCTTTT+TGG | - | chr2_1:7512358-7512377 | None:intergenic | 35.0% |
| !! | TTTTGTCTTCTTAGGTACTG+CGG | + | chr2_1:7512562-7512581 | Msa0191840:intron | 35.0% |
| CATGGTTCATGAGTTGTAAT+TGG | + | chr2_1:7512614-7512633 | Msa0191840:intron | 35.0% | |
| !!! | TTCTGTTTTTTTGGATCTGC+TGG | + | chr2_1:7512784-7512803 | Msa0191840:intron | 35.0% |
| ! | TTTTCTGTTTCGGTTTAGGA+AGG | + | chr2_1:7512826-7512845 | Msa0191840:intron | 35.0% |
| TTTCTGTTTCGGTTTAGGAA+GGG | + | chr2_1:7512827-7512846 | Msa0191840:intron | 35.0% | |
| AAGATGATCTTCCATCCAAA+AGG | + | chr2_1:7513199-7513218 | Msa0191840:CDS | 35.0% | |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | - | chr2_1:7513217-7513236 | None:intergenic | 35.0% |
| TCATTCAAATCGAACTTCAC+AGG | - | chr2_1:7513285-7513304 | None:intergenic | 35.0% | |
| GCGGGATTTATCATCTATTC+CGG | + | chr2_1:7512000-7512019 | Msa0191840:CDS | 40.0% | |
| GGAGAACATGTTGGGAAATT+TGG | - | chr2_1:7512043-7512062 | None:intergenic | 40.0% | |
| GATATACCTGCAAGCACAAA+AGG | + | chr2_1:7512070-7512089 | Msa0191840:CDS | 40.0% | |
| TCATCATCATCCTCTGGTAT+AGG | - | chr2_1:7512115-7512134 | None:intergenic | 40.0% | |
| ! | TATACCAGAGGATGATGATG+AGG | + | chr2_1:7512114-7512133 | Msa0191840:CDS | 40.0% |
| CCCTCAACACTTTCATTCAA+TGG | + | chr2_1:7512332-7512351 | Msa0191840:CDS | 40.0% | |
| !! | GCCATTGAATGAAAGTGTTG+AGG | - | chr2_1:7512336-7512355 | None:intergenic | 40.0% |
| AAGTTACACGGAAAAGGAGA+AGG | - | chr2_1:7512411-7512430 | None:intergenic | 40.0% | |
| ATAAATGTGGTCTATGGCTG+TGG | + | chr2_1:7512539-7512558 | Msa0191840:intron | 40.0% | |
| TACTAGGTGATAAAAGGGGA+AGG | + | chr2_1:7512641-7512660 | Msa0191840:intron | 40.0% | |
| ACTAGGTGATAAAAGGGGAA+GGG | + | chr2_1:7512642-7512661 | Msa0191840:intron | 40.0% | |
| GAGAATGCATAGTTAGTGTG+TGG | + | chr2_1:7512687-7512706 | Msa0191840:intron | 40.0% | |
| TAGTTAGTGTGTGGTGATCT+AGG | + | chr2_1:7512696-7512715 | Msa0191840:intron | 40.0% | |
| AGTTAGTGTGTGGTGATCTA+GGG | + | chr2_1:7512697-7512716 | Msa0191840:intron | 40.0% | |
| CGGTACAATTGTATTGTCAC+TGG | + | chr2_1:7512728-7512747 | Msa0191840:intron | 40.0% | |
| !! | TTTTTATGGCAGTGGCCTTA+TGG | + | chr2_1:7512938-7512957 | Msa0191840:intron | 40.0% |
| !!! | TTTTATGGCAGTGGCCTTAT+GGG | + | chr2_1:7512939-7512958 | Msa0191840:intron | 40.0% |
| CCATAATATCTCTTGTTGGG+AGG | - | chr2_1:7513323-7513342 | None:intergenic | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | + | chr2_1:7513320-7513339 | Msa0191840:CDS | 40.0% | |
| GCGGGATTTATCATCTATTC+CGG | + | chr2_1:7512000-7512019 | Msa0191840:CDS | 40.0% | |
| GGAGAACATGTTGGGAAATT+TGG | - | chr2_1:7512043-7512062 | None:intergenic | 40.0% | |
| GATATACCTGCAAGCACAAA+AGG | + | chr2_1:7512070-7512089 | Msa0191840:CDS | 40.0% | |
| TCATCATCATCCTCTGGTAT+AGG | - | chr2_1:7512115-7512134 | None:intergenic | 40.0% | |
| ! | TATACCAGAGGATGATGATG+AGG | + | chr2_1:7512114-7512133 | Msa0191840:CDS | 40.0% |
| CCCTCAACACTTTCATTCAA+TGG | + | chr2_1:7512332-7512351 | Msa0191840:CDS | 40.0% | |
| !! | GCCATTGAATGAAAGTGTTG+AGG | - | chr2_1:7512336-7512355 | None:intergenic | 40.0% |
| AAGTTACACGGAAAAGGAGA+AGG | - | chr2_1:7512411-7512430 | None:intergenic | 40.0% | |
| ATAAATGTGGTCTATGGCTG+TGG | + | chr2_1:7512539-7512558 | Msa0191840:intron | 40.0% | |
| TACTAGGTGATAAAAGGGGA+AGG | + | chr2_1:7512641-7512660 | Msa0191840:intron | 40.0% | |
| ACTAGGTGATAAAAGGGGAA+GGG | + | chr2_1:7512642-7512661 | Msa0191840:intron | 40.0% | |
| GAGAATGCATAGTTAGTGTG+TGG | + | chr2_1:7512687-7512706 | Msa0191840:intron | 40.0% | |
| TAGTTAGTGTGTGGTGATCT+AGG | + | chr2_1:7512696-7512715 | Msa0191840:intron | 40.0% | |
| AGTTAGTGTGTGGTGATCTA+GGG | + | chr2_1:7512697-7512716 | Msa0191840:intron | 40.0% | |
| CGGTACAATTGTATTGTCAC+TGG | + | chr2_1:7512728-7512747 | Msa0191840:intron | 40.0% | |
| !! | TTTTTATGGCAGTGGCCTTA+TGG | + | chr2_1:7512938-7512957 | Msa0191840:intron | 40.0% |
| !!! | TTTTATGGCAGTGGCCTTAT+GGG | + | chr2_1:7512939-7512958 | Msa0191840:intron | 40.0% |
| CCATAATATCTCTTGTTGGG+AGG | - | chr2_1:7513323-7513342 | None:intergenic | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | + | chr2_1:7513320-7513339 | Msa0191840:CDS | 40.0% | |
| AGACCTGACTAAGGAGATCA+GGG | + | chr2_1:7511967-7511986 | Msa0191840:CDS | 45.0% | |
| AGATCAGGGATCAAGTGATG+CGG | + | chr2_1:7511981-7512000 | Msa0191840:CDS | 45.0% | |
| GGGAAATGTTGAGAGAAAGC+CGG | - | chr2_1:7512022-7512041 | None:intergenic | 45.0% | |
| CGGTACTAGGAGAACATGTT+GGG | - | chr2_1:7512051-7512070 | None:intergenic | 45.0% | |
| TCGGTACTAGGAGAACATGT+TGG | - | chr2_1:7512052-7512071 | None:intergenic | 45.0% | |
| CTTGCAGGTATATCGGTACT+AGG | - | chr2_1:7512064-7512083 | None:intergenic | 45.0% | |
| ! | CAACTACCTTTTGTGCTTGC+AGG | - | chr2_1:7512079-7512098 | None:intergenic | 45.0% |
| TCATCATCCTCTGGTATAGG+CGG | - | chr2_1:7512112-7512131 | None:intergenic | 45.0% | |
| ATGTCCTCATCATCATCCTC+TGG | - | chr2_1:7512121-7512140 | None:intergenic | 45.0% | |
| AGAAAATGGTATGGTGAGGG+TGG | + | chr2_1:7512237-7512256 | Msa0191840:CDS | 45.0% | |
| ACCTTTGTCACCTCATCTGT+GGG | - | chr2_1:7512304-7512323 | None:intergenic | 45.0% | |
| AACCTTTGTCACCTCATCTG+TGG | - | chr2_1:7512305-7512324 | None:intergenic | 45.0% | |
| ACAGATGAGGTGACAAAGGT+TGG | + | chr2_1:7512304-7512323 | Msa0191840:CDS | 45.0% | |
| !!! | GGCTGTGGTTTTGTCTTCTT+AGG | + | chr2_1:7512554-7512573 | Msa0191840:intron | 45.0% |
| ! | ATAAAAGGGGAAGGGTATGC+TGG | + | chr2_1:7512650-7512669 | Msa0191840:intron | 45.0% |
| AAAAAACCAGCAGGCACACA+AGG | - | chr2_1:7512923-7512942 | None:intergenic | 45.0% | |
| !!! | GTGTGCCTGCTGGTTTTTTA+TGG | + | chr2_1:7512924-7512943 | Msa0191840:intron | 45.0% |
| CACTGCCATAAAAAACCAGC+AGG | - | chr2_1:7512932-7512951 | None:intergenic | 45.0% | |
| !!! | CTGCTGGTTTTTTATGGCAG+TGG | + | chr2_1:7512930-7512949 | Msa0191840:intron | 45.0% |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | - | chr2_1:7513213-7513232 | None:intergenic | 45.0% |
| AGACCTGACTAAGGAGATCA+GGG | + | chr2_1:7511967-7511986 | Msa0191840:CDS | 45.0% | |
| AGATCAGGGATCAAGTGATG+CGG | + | chr2_1:7511981-7512000 | Msa0191840:CDS | 45.0% | |
| GGGAAATGTTGAGAGAAAGC+CGG | - | chr2_1:7512022-7512041 | None:intergenic | 45.0% | |
| CGGTACTAGGAGAACATGTT+GGG | - | chr2_1:7512051-7512070 | None:intergenic | 45.0% | |
| TCGGTACTAGGAGAACATGT+TGG | - | chr2_1:7512052-7512071 | None:intergenic | 45.0% | |
| CTTGCAGGTATATCGGTACT+AGG | - | chr2_1:7512064-7512083 | None:intergenic | 45.0% | |
| ! | CAACTACCTTTTGTGCTTGC+AGG | - | chr2_1:7512079-7512098 | None:intergenic | 45.0% |
| TCATCATCCTCTGGTATAGG+CGG | - | chr2_1:7512112-7512131 | None:intergenic | 45.0% | |
| ATGTCCTCATCATCATCCTC+TGG | - | chr2_1:7512121-7512140 | None:intergenic | 45.0% | |
| AGAAAATGGTATGGTGAGGG+TGG | + | chr2_1:7512237-7512256 | Msa0191840:CDS | 45.0% | |
| ACCTTTGTCACCTCATCTGT+GGG | - | chr2_1:7512304-7512323 | None:intergenic | 45.0% | |
| AACCTTTGTCACCTCATCTG+TGG | - | chr2_1:7512305-7512324 | None:intergenic | 45.0% | |
| ACAGATGAGGTGACAAAGGT+TGG | + | chr2_1:7512304-7512323 | Msa0191840:CDS | 45.0% | |
| !!! | GGCTGTGGTTTTGTCTTCTT+AGG | + | chr2_1:7512554-7512573 | Msa0191840:intron | 45.0% |
| ! | ATAAAAGGGGAAGGGTATGC+TGG | + | chr2_1:7512650-7512669 | Msa0191840:intron | 45.0% |
| AAAAAACCAGCAGGCACACA+AGG | - | chr2_1:7512923-7512942 | None:intergenic | 45.0% | |
| !!! | GTGTGCCTGCTGGTTTTTTA+TGG | + | chr2_1:7512924-7512943 | Msa0191840:intron | 45.0% |
| CACTGCCATAAAAAACCAGC+AGG | - | chr2_1:7512932-7512951 | None:intergenic | 45.0% | |
| !!! | CTGCTGGTTTTTTATGGCAG+TGG | + | chr2_1:7512930-7512949 | Msa0191840:intron | 45.0% |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | - | chr2_1:7513213-7513232 | None:intergenic | 45.0% |
| CAGACCTGACTAAGGAGATC+AGG | + | chr2_1:7511966-7511985 | Msa0191840:CDS | 50.0% | |
| GATCCCTGATCTCCTTAGTC+AGG | - | chr2_1:7511973-7511992 | None:intergenic | 50.0% | |
| GATCAGGGATCAAGTGATGC+GGG | + | chr2_1:7511982-7512001 | Msa0191840:CDS | 50.0% | |
| ACGGAAAAGGAGAAGGTCGA+GGG | - | chr2_1:7512404-7512423 | None:intergenic | 50.0% | |
| ! | GGTATGCTGGCTGTTCTAAG+AGG | + | chr2_1:7512663-7512682 | Msa0191840:intron | 50.0% |
| GGTGATCTAGGGATGTGATG+CGG | + | chr2_1:7512708-7512727 | Msa0191840:intron | 50.0% | |
| ! | GATCTGCTGGTTGTTTGTGC+AGG | + | chr2_1:7512797-7512816 | Msa0191840:intron | 50.0% |
| TCGGTTTAGGAAGGGTCTGT+TGG | + | chr2_1:7512835-7512854 | Msa0191840:intron | 50.0% | |
| !! | AGGGTCTGTTGGCCTAGTTT+TGG | + | chr2_1:7512846-7512865 | Msa0191840:intron | 50.0% |
| !! | GGGTCTGTTGGCCTAGTTTT+GGG | + | chr2_1:7512847-7512866 | Msa0191840:intron | 50.0% |
| AGCAAAACACGGCTACAGGA+AGG | - | chr2_1:7512890-7512909 | None:intergenic | 50.0% | |
| GCCAAAGCAGGAGCAAAACA+CGG | - | chr2_1:7512901-7512920 | None:intergenic | 50.0% | |
| CAGACCTGACTAAGGAGATC+AGG | + | chr2_1:7511966-7511985 | Msa0191840:CDS | 50.0% | |
| GATCCCTGATCTCCTTAGTC+AGG | - | chr2_1:7511973-7511992 | None:intergenic | 50.0% | |
| GATCAGGGATCAAGTGATGC+GGG | + | chr2_1:7511982-7512001 | Msa0191840:CDS | 50.0% | |
| ACGGAAAAGGAGAAGGTCGA+GGG | - | chr2_1:7512404-7512423 | None:intergenic | 50.0% | |
| ! | GGTATGCTGGCTGTTCTAAG+AGG | + | chr2_1:7512663-7512682 | Msa0191840:intron | 50.0% |
| GGTGATCTAGGGATGTGATG+CGG | + | chr2_1:7512708-7512727 | Msa0191840:intron | 50.0% | |
| ! | GATCTGCTGGTTGTTTGTGC+AGG | + | chr2_1:7512797-7512816 | Msa0191840:intron | 50.0% |
| TCGGTTTAGGAAGGGTCTGT+TGG | + | chr2_1:7512835-7512854 | Msa0191840:intron | 50.0% | |
| !! | AGGGTCTGTTGGCCTAGTTT+TGG | + | chr2_1:7512846-7512865 | Msa0191840:intron | 50.0% |
| !! | GGGTCTGTTGGCCTAGTTTT+GGG | + | chr2_1:7512847-7512866 | Msa0191840:intron | 50.0% |
| AGCAAAACACGGCTACAGGA+AGG | - | chr2_1:7512890-7512909 | None:intergenic | 50.0% | |
| GCCAAAGCAGGAGCAAAACA+CGG | - | chr2_1:7512901-7512920 | None:intergenic | 50.0% | |
| TCACCTCATCTGTGGGCATG+GGG | - | chr2_1:7512297-7512316 | None:intergenic | 55.0% | |
| GTCACCTCATCTGTGGGCAT+GGG | - | chr2_1:7512298-7512317 | None:intergenic | 55.0% | |
| TGTCACCTCATCTGTGGGCA+TGG | - | chr2_1:7512299-7512318 | None:intergenic | 55.0% | |
| GCCCACAGATGAGGTGACAA+AGG | + | chr2_1:7512300-7512319 | Msa0191840:CDS | 55.0% | |
| CACGGAAAAGGAGAAGGTCG+AGG | - | chr2_1:7512405-7512424 | None:intergenic | 55.0% | |
| CAGGAGCAAAACACGGCTAC+AGG | - | chr2_1:7512894-7512913 | None:intergenic | 55.0% | |
| ! | GCCGTGTTTTGCTCCTGCTT+TGG | + | chr2_1:7512897-7512916 | Msa0191840:intron | 55.0% |
| TCACCTCATCTGTGGGCATG+GGG | - | chr2_1:7512297-7512316 | None:intergenic | 55.0% | |
| GTCACCTCATCTGTGGGCAT+GGG | - | chr2_1:7512298-7512317 | None:intergenic | 55.0% | |
| TGTCACCTCATCTGTGGGCA+TGG | - | chr2_1:7512299-7512318 | None:intergenic | 55.0% | |
| GCCCACAGATGAGGTGACAA+AGG | + | chr2_1:7512300-7512319 | Msa0191840:CDS | 55.0% | |
| CACGGAAAAGGAGAAGGTCG+AGG | - | chr2_1:7512405-7512424 | None:intergenic | 55.0% | |
| CAGGAGCAAAACACGGCTAC+AGG | - | chr2_1:7512894-7512913 | None:intergenic | 55.0% | |
| ! | GCCGTGTTTTGCTCCTGCTT+TGG | + | chr2_1:7512897-7512916 | Msa0191840:intron | 55.0% |
| AGTCCCCATGCCCACAGATG+AGG | + | chr2_1:7512291-7512310 | Msa0191840:CDS | 60.0% | |
| CAGGCACACAAGGCCAAAGC+AGG | - | chr2_1:7512913-7512932 | None:intergenic | 60.0% | |
| !! | CTTTGGCCTTGTGTGCCTGC+TGG | + | chr2_1:7512914-7512933 | Msa0191840:intron | 60.0% |
| AGTCCCCATGCCCACAGATG+AGG | + | chr2_1:7512291-7512310 | Msa0191840:CDS | 60.0% | |
| CAGGCACACAAGGCCAAAGC+AGG | - | chr2_1:7512913-7512932 | None:intergenic | 60.0% | |
| !! | CTTTGGCCTTGTGTGCCTGC+TGG | + | chr2_1:7512914-7512933 | Msa0191840:intron | 60.0% |
| TGCAGCGCCGCCTATACCAG+AGG | + | chr2_1:7512102-7512121 | Msa0191840:CDS | 65.0% | |
| TGCAGCGCCGCCTATACCAG+AGG | + | chr2_1:7512102-7512121 | Msa0191840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7511959 | 7513344 | 7511959 | ID=Msa0191840;Name=Msa0191840 |
| chr2_1 | mRNA | 7511959 | 7513344 | 7511959 | ID=Msa0191840-mRNA-1;Parent=Msa0191840;Name=Msa0191840-mRNA-1;_AED=0.20;_eAED=0.25;_QI=0|0|0|1|0|0.33|3|0|195 |
| chr2_1 | exon | 7511959 | 7512198 | 7511959 | ID=Msa0191840-mRNA-1:exon:3468;Parent=Msa0191840-mRNA-1 |
| chr2_1 | exon | 7512208 | 7512387 | 7512208 | ID=Msa0191840-mRNA-1:exon:3469;Parent=Msa0191840-mRNA-1 |
| chr2_1 | exon | 7513180 | 7513344 | 7513180 | ID=Msa0191840-mRNA-1:exon:3470;Parent=Msa0191840-mRNA-1 |
| chr2_1 | CDS | 7511959 | 7512198 | 7511959 | ID=Msa0191840-mRNA-1:cds;Parent=Msa0191840-mRNA-1 |
| chr2_1 | CDS | 7512208 | 7512387 | 7512208 | ID=Msa0191840-mRNA-1:cds;Parent=Msa0191840-mRNA-1 |
| chr2_1 | CDS | 7513180 | 7513344 | 7513180 | ID=Msa0191840-mRNA-1:cds;Parent=Msa0191840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
