Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0332750 | Msa0793420 | 0.821062 | 4.929944e-53 | -8.615850e-47 |
| Msa0332750 | Msa1057420 | 0.818057 | 2.390585e-52 | -8.615850e-47 |
| Msa0332750 | Msa1057430 | 0.828782 | 7.425083e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 2_4:-49994903 | Msa0332750:CDS |
| CCAGTTGCAAGTGTCGATTC+TGG | 0.310961 | 2_4:-49996237 | Msa0332750:CDS |
| CGATGTAGGCGAAGTTAATT+CGG | 0.329255 | 2_4:-49994955 | Msa0332750:intron |
| TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 2_4:-49994880 | Msa0332750:CDS |
| TTCATCACATTGGCAATCAT+TGG | 0.392408 | 2_4:+49993082 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.407565 | 2_4:-49994438 | Msa0332750:CDS |
| CCAGAATCGACACTTGCAAC+TGG | 0.413215 | 2_4:+49996237 | None:intergenic |
| ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 2_4:-49994879 | Msa0332750:CDS |
| ATTCTGGGAGATAACAATTC+CGG | 0.450738 | 2_4:-49996221 | Msa0332750:intron |
| TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 2_4:-49994892 | Msa0332750:CDS |
| AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 2_4:-49994912 | Msa0332750:CDS |
| CAGTTGCAAGTGTCGATTCT+GGG | 0.469405 | 2_4:-49996236 | Msa0332750:CDS |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 2_4:-49994445 | Msa0332750:CDS |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 2_4:-49994482 | Msa0332750:intron |
| CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 2_4:-49994875 | Msa0332750:intron |
| CAGGCATAAGCAAGTGATGT+AGG | 0.511195 | 2_4:-49993108 | Msa0332750:exon |
| ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 2_4:-49994429 | Msa0332750:intron |
| TTGAGGCTTCTTCATCACAT+TGG | 0.542685 | 2_4:+49993072 | None:intergenic |
| GATGCTAATGTTATCACTGT+TGG | 0.589755 | 2_4:-49994918 | Msa0332750:CDS |
| TCATCAACATATCGGCATCA+GGG | 0.604907 | 2_4:-49994437 | Msa0332750:CDS |
| CTGATGCCGATATGTTGATG+AGG | 0.666580 | 2_4:+49994439 | None:intergenic |
| GTATTCGGGAGATATTCTTG+AGG | 0.675734 | 2_4:+49993055 | None:intergenic |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 2_4:+49994440 | None:intergenic |
| CACTTGCAACTGGATTGTCA+TGG | 0.682285 | 2_4:+49996247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGAGTTTTATTTTATAAA+GGG | - | chr2_4:49993112-49993131 | Msa0332750:intron | 10.0% |
| !! | AATAATAAAAATAAAAGTAG+TGG | + | chr2_4:49993502-49993521 | None:intergenic | 10.0% |
| !!! | TATAGATTGATTTTATATTT+GGG | - | chr2_4:49994683-49994702 | Msa0332750:intron | 10.0% |
| !!! | GTAATAATTATTTTACAATA+TGG | - | chr2_4:49995626-49995645 | Msa0332750:intron | 10.0% |
| !!! | TTTATATAATTTTTTCCTAA+AGG | - | chr2_4:49995692-49995711 | Msa0332750:intron | 10.0% |
| !!! | GATTGAGTTTTATTTTATAA+AGG | - | chr2_4:49993111-49993130 | Msa0332750:intron | 15.0% |
| !!! | ATTTTGATGAAAATATCAAA+GGG | + | chr2_4:49993591-49993610 | None:intergenic | 15.0% |
| !!! | AATTTTGATGAAAATATCAA+AGG | + | chr2_4:49993592-49993611 | None:intergenic | 15.0% |
| !! | ATATGAAAATTCATTAAAGA+GGG | + | chr2_4:49993630-49993649 | None:intergenic | 15.0% |
| !! | AATATGAAAATTCATTAAAG+AGG | + | chr2_4:49993631-49993650 | None:intergenic | 15.0% |
| !! | TTACTGGATTTATTATATTT+AGG | - | chr2_4:49994031-49994050 | Msa0332750:intron | 15.0% |
| !! | TACTGGATTTATTATATTTA+GGG | - | chr2_4:49994032-49994051 | Msa0332750:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | - | chr2_4:49994407-49994426 | Msa0332750:intron | 15.0% |
| !!! | CTATAGATTGATTTTATATT+TGG | - | chr2_4:49994682-49994701 | Msa0332750:intron | 15.0% |
| !!! | AAAATCTTTTACAAGATTTA+GGG | + | chr2_4:49995823-49995842 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTACAAGATTT+AGG | + | chr2_4:49995824-49995843 | None:intergenic | 15.0% |
| !!! | AGTAGTTTAAGTTAAATGTT+GGG | - | chr2_4:49993142-49993161 | Msa0332750:intron | 20.0% |
| !!! | TTTTGATGAAAATATCAAAG+GGG | + | chr2_4:49993590-49993609 | None:intergenic | 20.0% |
| !!! | ATTTCATGATGATTGATTTT+GGG | + | chr2_4:49993720-49993739 | None:intergenic | 20.0% |
| !!! | AATTTCATGATGATTGATTT+TGG | + | chr2_4:49993721-49993740 | None:intergenic | 20.0% |
| !! | ACTGGATTTATTATATTTAG+GGG | - | chr2_4:49994033-49994052 | Msa0332750:intron | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | + | chr2_4:49994592-49994611 | None:intergenic | 20.0% |
| !!! | AGTATTTTAGTTACAATTCT+TGG | - | chr2_4:49995035-49995054 | Msa0332750:intron | 20.0% |
| !!! | TGCATATTTTTTTTTGCATA+TGG | - | chr2_4:49995168-49995187 | Msa0332750:intron | 20.0% |
| !!! | ATAAATTTTCTCCATTGAAA+AGG | + | chr2_4:49995508-49995527 | None:intergenic | 20.0% |
| !! | TTCATAAAATTACATCCTTT+AGG | + | chr2_4:49995710-49995729 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTACTATTGTAC+AGG | - | chr2_4:49996075-49996094 | Msa0332750:intron | 20.0% |
| !!! | ACAATGACTTTTATTGTATT+CGG | + | chr2_4:49996165-49996184 | None:intergenic | 20.0% |
| ! | ATAAAATCAGAATCCAAAGA+AGG | - | chr2_4:49993042-49993061 | Msa0332750:three_prime_UTR | 25.0% |
| ! | TAAAATCAGAATCCAAAGAA+GGG | - | chr2_4:49993043-49993062 | Msa0332750:three_prime_UTR | 25.0% |
| !!! | AACGTTTTTCAGAAAAGTAA+GGG | - | chr2_4:49993071-49993090 | Msa0332750:three_prime_UTR | 25.0% |
| !! | GAGTAGTTTAAGTTAAATGT+TGG | - | chr2_4:49993141-49993160 | Msa0332750:intron | 25.0% |
| !! | GTAGTTTAAGTTAAATGTTG+GGG | - | chr2_4:49993143-49993162 | Msa0332750:intron | 25.0% |
| !! | TACTAAAAAAACAGCGTTTT+CGG | - | chr2_4:49993257-49993276 | Msa0332750:intron | 25.0% |
| !! | GAGTTTTTGTCTGAATTTTT+CGG | - | chr2_4:49993299-49993318 | Msa0332750:intron | 25.0% |
| !! | TCAAAATTTCACACGATTTT+GGG | + | chr2_4:49993374-49993393 | None:intergenic | 25.0% |
| !! | ATCAAAATTTCACACGATTT+TGG | + | chr2_4:49993375-49993394 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATATCAAAGG+GGG | + | chr2_4:49993589-49993608 | None:intergenic | 25.0% |
| !! | AAAATCTGGAACTTAACTAA+CGG | + | chr2_4:49993771-49993790 | None:intergenic | 25.0% |
| ! | AAAATAATTCTGATGAGATG+AGG | + | chr2_4:49994013-49994032 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | - | chr2_4:49994015-49994034 | Msa0332750:intron | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | - | chr2_4:49994198-49994217 | Msa0332750:intron | 25.0% |
| ! | GTTAATTCGGAAAAATTCAA+CGG | - | chr2_4:49994260-49994279 | Msa0332750:intron | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | - | chr2_4:49994352-49994371 | Msa0332750:intron | 25.0% |
| ! | AATGAAACAAACAGGAAAAT+AGG | + | chr2_4:49994568-49994587 | None:intergenic | 25.0% |
| ! | AAGTGAGAATAATAAAGACA+AGG | + | chr2_4:49994832-49994851 | None:intergenic | 25.0% |
| !! | GTCTTTATTATTCTCACTTT+TGG | - | chr2_4:49994833-49994852 | Msa0332750:intron | 25.0% |
| !! | ATTCACTTTCTCAACTTTTT+GGG | + | chr2_4:49994902-49994921 | None:intergenic | 25.0% |
| !! | AATTCACTTTCTCAACTTTT+TGG | + | chr2_4:49994903-49994922 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAGAAAGTGAAT+TGG | - | chr2_4:49994902-49994921 | Msa0332750:CDS | 25.0% |
| ! | AAAAGTTGAGAAAGTGAATT+GGG | - | chr2_4:49994903-49994922 | Msa0332750:CDS | 25.0% |
| !! | AAATATGCATAAAAAAGTGC+AGG | + | chr2_4:49995157-49995176 | None:intergenic | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | - | chr2_4:49995186-49995205 | Msa0332750:intron | 25.0% |
| !!! | CTCTATTTTTTGCTGATTAA+TGG | - | chr2_4:49995292-49995311 | Msa0332750:intron | 25.0% |
| !!! | GAAGAGTTTAATTTGTTTTG+TGG | - | chr2_4:49995388-49995407 | Msa0332750:intron | 25.0% |
| !! | AGTTTCTTTAACCTTTTCAA+TGG | - | chr2_4:49995494-49995513 | Msa0332750:intron | 25.0% |
| ! | TTATCAGCTTCATTACTAAA+CGG | - | chr2_4:49995524-49995543 | Msa0332750:intron | 25.0% |
| !!! | TTATGTGACATTCAAGTTTT+AGG | + | chr2_4:49995747-49995766 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | - | chr2_4:49996030-49996049 | Msa0332750:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+GGG | + | chr2_4:49996164-49996183 | None:intergenic | 25.0% |
| !! | CAACGTTTTTCAGAAAAGTA+AGG | - | chr2_4:49993070-49993089 | Msa0332750:three_prime_UTR | 30.0% |
| AGTATATTACCTCAATGTGA+AGG | + | chr2_4:49993204-49993223 | None:intergenic | 30.0% | |
| ATTGAGGTAATATACTTGCA+AGG | - | chr2_4:49993208-49993227 | Msa0332750:intron | 30.0% | |
| TTGAGGTAATATACTTGCAA+GGG | - | chr2_4:49993209-49993228 | Msa0332750:intron | 30.0% | |
| !! | TTTTGTCTGAATTTTTCGGA+CGG | - | chr2_4:49993303-49993322 | Msa0332750:intron | 30.0% |
| ! | TTTGATAGCATGTTCAAACA+AGG | - | chr2_4:49993389-49993408 | Msa0332750:intron | 30.0% |
| ! | TGAATATTTCACACGGTTTT+GGG | + | chr2_4:49993463-49993482 | None:intergenic | 30.0% |
| ! | TGAAATATTCAGACGGATTT+CGG | - | chr2_4:49993472-49993491 | Msa0332750:intron | 30.0% |
| ATGTGTTCTTCAAACTTTGT+AGG | + | chr2_4:49993531-49993550 | None:intergenic | 30.0% | |
| !! | CACATTCTTTTTCATTTGAG+CGG | - | chr2_4:49993546-49993565 | Msa0332750:intron | 30.0% |
| !! | ACATTCTTTTTCATTTGAGC+GGG | - | chr2_4:49993547-49993566 | Msa0332750:intron | 30.0% |
| TTGATGAAAATATCAAAGGG+GGG | + | chr2_4:49993588-49993607 | None:intergenic | 30.0% | |
| ! | TCATTAAAGAGGGAAGTTTT+TGG | + | chr2_4:49993620-49993639 | None:intergenic | 30.0% |
| AAAGAGGGAAAAAGATGAAA+GGG | + | chr2_4:49993689-49993708 | None:intergenic | 30.0% | |
| AAAAGAGGGAAAAAGATGAA+AGG | + | chr2_4:49993690-49993709 | None:intergenic | 30.0% | |
| !!! | TTTTGGGTTCAATGAAAAGA+GGG | + | chr2_4:49993704-49993723 | None:intergenic | 30.0% |
| !!! | ATTTTGGGTTCAATGAAAAG+AGG | + | chr2_4:49993705-49993724 | None:intergenic | 30.0% |
| ! | GGTTCAATTTCATTGATGAT+GGG | + | chr2_4:49993748-49993767 | None:intergenic | 30.0% |
| ! | AAATCTGGAACTTAACTAAC+GGG | + | chr2_4:49993770-49993789 | None:intergenic | 30.0% |
| ! | GTTAAGTTCCAGATTTTCAA+TGG | - | chr2_4:49993774-49993793 | Msa0332750:intron | 30.0% |
| ! | AAATCAACAAAATCTGGAAC+AGG | + | chr2_4:49993828-49993847 | None:intergenic | 30.0% |
| TGAACAAACATGATGAAAAG+AGG | + | chr2_4:49993957-49993976 | None:intergenic | 30.0% | |
| AAGTTCGTTCAATCACAAAT+GGG | - | chr2_4:49993976-49993995 | Msa0332750:intron | 30.0% | |
| ATATTTAGGGGATAGAATGA+AGG | - | chr2_4:49994045-49994064 | Msa0332750:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | + | chr2_4:49994188-49994207 | None:intergenic | 30.0% |
| GTCTAATTAGAGTTACTCAA+AGG | - | chr2_4:49995072-49995091 | Msa0332750:intron | 30.0% | |
| TAATTAGAGTTACTCAAAGG+TGG | - | chr2_4:49995075-49995094 | Msa0332750:intron | 30.0% | |
| ! | GAATTAAGAGGTATGGATTA+TGG | - | chr2_4:49995366-49995385 | Msa0332750:intron | 30.0% |
| ! | GGTTAGTTAGTTGAATAAGA+TGG | - | chr2_4:49995409-49995428 | Msa0332750:intron | 30.0% |
| !!! | CTAGCTATACTGTTGTTTTA+AGG | - | chr2_4:49995577-49995596 | Msa0332750:intron | 30.0% |
| ! | ATTCTGGGAGATAACAATTC+CGG | - | chr2_4:49992981-49993000 | Msa0332750:three_prime_UTR | 35.0% |
| CTCTGCAACATAATTGTTAC+CGG | + | chr2_4:49993003-49993022 | None:intergenic | 35.0% | |
| TAAGTTAAATGTTGGGGTCA+AGG | - | chr2_4:49993149-49993168 | Msa0332750:intron | 35.0% | |
| GTAAAACTACCTTCACATTG+AGG | - | chr2_4:49993192-49993211 | Msa0332750:intron | 35.0% | |
| ! | AAAAAAACAGCGTTTTCGGA+CGG | - | chr2_4:49993261-49993280 | Msa0332750:intron | 35.0% |
| !! | TGAATTTTTCGGACGGATTT+GGG | - | chr2_4:49993310-49993329 | Msa0332750:intron | 35.0% |
| !! | AATTTCACACGATTTTGGGA+CGG | + | chr2_4:49993370-49993389 | None:intergenic | 35.0% |
| ! | CTGAATATTTCACACGGTTT+TGG | + | chr2_4:49993464-49993483 | None:intergenic | 35.0% |
| AACCGTGTGAAATATTCAGA+CGG | - | chr2_4:49993465-49993484 | Msa0332750:intron | 35.0% | |
| ATCCGTCTGAATATTTCACA+CGG | + | chr2_4:49993470-49993489 | None:intergenic | 35.0% | |
| GATGAAAGGGAGTAATGTTA+GGG | + | chr2_4:49993676-49993695 | None:intergenic | 35.0% | |
| AGATGAAAGGGAGTAATGTT+AGG | + | chr2_4:49993677-49993696 | None:intergenic | 35.0% | |
| GGGTTCAATTTCATTGATGA+TGG | + | chr2_4:49993749-49993768 | None:intergenic | 35.0% | |
| ! | AATCTGGAACTTAACTAACG+GGG | + | chr2_4:49993769-49993788 | None:intergenic | 35.0% |
| ACGCGAAAATCAACAAAATC+TGG | + | chr2_4:49993834-49993853 | None:intergenic | 35.0% | |
| CAAGTTCGTTCAATCACAAA+TGG | - | chr2_4:49993975-49993994 | Msa0332750:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | - | chr2_4:49994062-49994081 | Msa0332750:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | - | chr2_4:49994063-49994082 | Msa0332750:intron | 35.0% |
| ATTGTGACGATTATCGATGT+AGG | - | chr2_4:49994233-49994252 | Msa0332750:intron | 35.0% | |
| GATGCTAATGTTATCACTGT+TGG | - | chr2_4:49994284-49994303 | Msa0332750:intron | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | + | chr2_4:49994521-49994540 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | - | chr2_4:49994757-49994776 | Msa0332750:intron | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | + | chr2_4:49994812-49994831 | None:intergenic | 35.0% | |
| !! | TCTCACTTTTGGTTAAATGC+AGG | - | chr2_4:49994844-49994863 | Msa0332750:intron | 35.0% |
| AGAAAGTGAATTGGGAAACT+TGG | - | chr2_4:49994911-49994930 | Msa0332750:CDS | 35.0% | |
| AAAGGTGGTTTCCTATGATA+TGG | - | chr2_4:49995090-49995109 | Msa0332750:intron | 35.0% | |
| TTAGTGTTCTGTTGCAAATC+AGG | - | chr2_4:49995124-49995143 | Msa0332750:intron | 35.0% | |
| TTCATATGCTTCATCACTTG+AGG | + | chr2_4:49995440-49995459 | None:intergenic | 35.0% | |
| GGTAATCCTCGTTGTAATTA+AGG | - | chr2_4:49995545-49995564 | Msa0332750:intron | 35.0% | |
| TCAAGTCCTTAATTACAACG+AGG | + | chr2_4:49995554-49995573 | None:intergenic | 35.0% | |
| ! | ACAATATGGCTTGTCTTTGA+TGG | - | chr2_4:49995640-49995659 | Msa0332750:intron | 35.0% |
| !!! | GACATTCAAGTTTTAGGTCA+CGG | + | chr2_4:49995741-49995760 | None:intergenic | 35.0% |
| TGTCACATAAAATCATGCAC+AGG | - | chr2_4:49995757-49995776 | Msa0332750:intron | 35.0% | |
| CAAATGTGATGTAGAACAGA+AGG | - | chr2_4:49995950-49995969 | Msa0332750:intron | 35.0% | |
| TTCATCACATTGGCAATCAT+TGG | + | chr2_4:49996123-49996142 | None:intergenic | 35.0% | |
| !! | CTGAATTTTTCGGACGGATT+TGG | - | chr2_4:49993309-49993328 | Msa0332750:intron | 40.0% |
| !! | CGGATTTGGGACAGTTTTAA+AGG | - | chr2_4:49993323-49993342 | Msa0332750:intron | 40.0% |
| GAAATTCGTGCGAAATTCGT+GGG | + | chr2_4:49993421-49993440 | None:intergenic | 40.0% | |
| TGAAATTCGTGCGAAATTCG+TGG | + | chr2_4:49993422-49993441 | None:intergenic | 40.0% | |
| !!! | TATTTCACACGGTTTTGGGA+CGG | + | chr2_4:49993459-49993478 | None:intergenic | 40.0% |
| ! | ATATTCAGACGGATTTCGGA+CGG | - | chr2_4:49993476-49993495 | Msa0332750:intron | 40.0% |
| GAACAGGACCATTGAAAATC+TGG | + | chr2_4:49993785-49993804 | None:intergenic | 40.0% | |
| ! | AATCTGGAACAGGAACAACA+CGG | + | chr2_4:49993818-49993837 | None:intergenic | 40.0% |
| AACTGGAACAGGAACAACAA+AGG | + | chr2_4:49993880-49993899 | None:intergenic | 40.0% | |
| !!! | ATTCTTGTGTTTTGGGAGGT+AGG | - | chr2_4:49994070-49994089 | Msa0332750:intron | 40.0% |
| TTGGGAGGTAGGAGTAAAAA+TGG | - | chr2_4:49994081-49994100 | Msa0332750:intron | 40.0% | |
| GTTGGATGGCAAATTCTTGT+TGG | + | chr2_4:49994153-49994172 | None:intergenic | 40.0% | |
| CAAGAATTTGCCATCCAACA+TGG | - | chr2_4:49994154-49994173 | Msa0332750:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | + | chr2_4:49994171-49994190 | None:intergenic | 40.0% | |
| CGATGTAGGCGAAGTTAATT+CGG | - | chr2_4:49994247-49994266 | Msa0332750:intron | 40.0% | |
| AATGTTATCACTGTTGGTGC+TGG | - | chr2_4:49994290-49994309 | Msa0332750:intron | 40.0% | |
| TATTGCTCTGGTTGTACTCT+TGG | - | chr2_4:49994322-49994341 | Msa0332750:intron | 40.0% | |
| ATTGCTCTGGTTGTACTCTT+GGG | - | chr2_4:49994323-49994342 | Msa0332750:intron | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | + | chr2_4:49994371-49994390 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | + | chr2_4:49994380-49994399 | None:intergenic | 40.0% | |
| CACACGGAAATGAAACAAAC+AGG | + | chr2_4:49994576-49994595 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | - | chr2_4:49994720-49994739 | Msa0332750:intron | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | + | chr2_4:49994765-49994784 | None:intergenic | 40.0% |
| TCATCAACATATCGGCATCA+GGG | - | chr2_4:49994765-49994784 | Msa0332750:intron | 40.0% | |
| GTGAATTGGGAAACTTGGAT+AGG | - | chr2_4:49994916-49994935 | Msa0332750:CDS | 40.0% | |
| ATCTCAACACGCCATATCAT+AGG | + | chr2_4:49995104-49995123 | None:intergenic | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | - | chr2_4:49995201-49995220 | Msa0332750:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | - | chr2_4:49995202-49995221 | Msa0332750:intron | 40.0% | |
| ATCAGTGATGATAAGCTAGC+AGG | - | chr2_4:49995343-49995362 | Msa0332750:intron | 40.0% | |
| TCAGTGATGATAAGCTAGCA+GGG | - | chr2_4:49995344-49995363 | Msa0332750:intron | 40.0% | |
| TAAGCTAGCAGGGAATTAAG+AGG | - | chr2_4:49995354-49995373 | Msa0332750:intron | 40.0% | |
| TAGCAGGGAATTAAGAGGTA+TGG | - | chr2_4:49995359-49995378 | Msa0332750:intron | 40.0% | |
| TTACTAGTGACCTCTAGTGT+TGG | - | chr2_4:49995887-49995906 | Msa0332750:intron | 40.0% | |
| TACTAGTGACCTCTAGTGTT+GGG | - | chr2_4:49995888-49995907 | Msa0332750:intron | 40.0% | |
| TTGAGGCTTCTTCATCACAT+TGG | + | chr2_4:49996133-49996152 | None:intergenic | 40.0% | |
| GTATTCGGGAGATATTCTTG+AGG | + | chr2_4:49996150-49996169 | None:intergenic | 40.0% | |
| CACTTGCAACTGGATTGTCA+TGG | + | chr2_4:49992958-49992977 | None:intergenic | 45.0% | |
| !! | CAGTTGCAAGTGTCGATTCT+GGG | - | chr2_4:49992966-49992985 | Msa0332750:three_prime_UTR | 45.0% |
| AAACGTTGTGCACCCTTCTT+TGG | + | chr2_4:49993058-49993077 | None:intergenic | 45.0% | |
| TGGGGTCAAGGTATAAATGC+AGG | - | chr2_4:49993161-49993180 | Msa0332750:intron | 45.0% | |
| GGGGTCAAGGTATAAATGCA+GGG | - | chr2_4:49993162-49993181 | Msa0332750:intron | 45.0% | |
| GGGTCAAGGTATAAATGCAG+GGG | - | chr2_4:49993163-49993182 | Msa0332750:intron | 45.0% | |
| ! | AGGTATAAATGCAGGGGTGT+AGG | - | chr2_4:49993169-49993188 | Msa0332750:intron | 45.0% |
| ! | GGTATAAATGCAGGGGTGTA+GGG | - | chr2_4:49993170-49993189 | Msa0332750:intron | 45.0% |
| ! | GCGTTTTCGGACGGAATTTT+CGG | - | chr2_4:49993270-49993289 | Msa0332750:intron | 45.0% |
| ! | TTTCGGACGGAATTTTCGGA+CGG | - | chr2_4:49993274-49993293 | Msa0332750:intron | 45.0% |
| !!! | CACGATTTTGGGACGGATTT+GGG | + | chr2_4:49993363-49993382 | None:intergenic | 45.0% |
| !!! | ACACGATTTTGGGACGGATT+TGG | + | chr2_4:49993364-49993383 | None:intergenic | 45.0% |
| ACAAAGGCGATGAGAAAAGC+TGG | + | chr2_4:49993864-49993883 | None:intergenic | 45.0% | |
| TCAAGAGCAAGAACTGGAAC+AGG | + | chr2_4:49993891-49993910 | None:intergenic | 45.0% | |
| CCAGTTCTTGCTCTTGACAT+CGG | - | chr2_4:49993894-49993913 | Msa0332750:intron | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | - | chr2_4:49994066-49994085 | Msa0332750:intron | 45.0% |
| GGATCTTAAGCCATGTTGGA+TGG | + | chr2_4:49994167-49994186 | None:intergenic | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | + | chr2_4:49994766-49994785 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | - | chr2_4:49994764-49994783 | Msa0332750:intron | 45.0% | |
| TCTTGACAAGTGACAAGAGC+AGG | - | chr2_4:49995248-49995267 | Msa0332750:intron | 45.0% | |
| AGAGCAGGAATGTTGTGTGT+AGG | - | chr2_4:49995263-49995282 | Msa0332750:intron | 45.0% | |
| GAGCAGGAATGTTGTGTGTA+GGG | - | chr2_4:49995264-49995283 | Msa0332750:intron | 45.0% | |
| ! | GGCTTGTCTTTGATGGCTAT+TGG | - | chr2_4:49995647-49995666 | Msa0332750:intron | 45.0% |
| TTGATTGTGCCCAACACTAG+AGG | + | chr2_4:49995900-49995919 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGGGCACAATCAA+TGG | - | chr2_4:49995900-49995919 | Msa0332750:intron | 45.0% |
| CAGGCATAAGCAAGTGATGT+AGG | - | chr2_4:49996094-49996113 | Msa0332750:intron | 45.0% | |
| CCAGAATCGACACTTGCAAC+TGG | + | chr2_4:49992968-49992987 | None:intergenic | 50.0% | |
| !! | CCAGTTGCAAGTGTCGATTC+TGG | - | chr2_4:49992965-49992984 | Msa0332750:three_prime_UTR | 50.0% |
| ACACGGTGGAAAACTGGAAC+AGG | + | chr2_4:49993801-49993820 | None:intergenic | 50.0% | |
| GGAACAACACGGTGGAAAAC+TGG | + | chr2_4:49993807-49993826 | None:intergenic | 50.0% | |
| CCGATGTCAAGAGCAAGAAC+TGG | + | chr2_4:49993897-49993916 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGGTATTGCTC+TGG | - | chr2_4:49994310-49994329 | Msa0332750:intron | 50.0% |
| CTCTGGTTGTACTCTTGGGA+AGG | - | chr2_4:49994327-49994346 | Msa0332750:intron | 50.0% | |
| ATATCGGCATCAGGGCAACT+TGG | - | chr2_4:49994773-49994792 | Msa0332750:intron | 50.0% | |
| CTGGAACAGGAACAACACGG+TGG | + | chr2_4:49993815-49993834 | None:intergenic | 55.0% | |
| !! | ACTGTTGGTGCTGGTGTTGC+TGG | - | chr2_4:49994299-49994318 | Msa0332750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49992933 | 49996291 | 49992933 | ID=Msa0332750;Name=Msa0332750 |
| chr2_4 | mRNA | 49992933 | 49996291 | 49992933 | ID=Msa0332750-mRNA-1;Parent=Msa0332750;Name=Msa0332750-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.25|0.6|0.6|0.25|0.4|5|181|79 |
| chr2_4 | exon | 49992933 | 49993127 | 49992933 | ID=Msa0332750-mRNA-1:exon:14952;Parent=Msa0332750-mRNA-1 |
| chr2_4 | exon | 49994430 | 49994500 | 49994430 | ID=Msa0332750-mRNA-1:exon:14951;Parent=Msa0332750-mRNA-1 |
| chr2_4 | exon | 49994876 | 49994969 | 49994876 | ID=Msa0332750-mRNA-1:exon:14950;Parent=Msa0332750-mRNA-1 |
| chr2_4 | exon | 49996222 | 49996277 | 49996222 | ID=Msa0332750-mRNA-1:exon:14949;Parent=Msa0332750-mRNA-1 |
| chr2_4 | exon | 49996287 | 49996291 | 49996287 | ID=Msa0332750-mRNA-1:exon:14948;Parent=Msa0332750-mRNA-1 |
| chr2_4 | CDS | 49996287 | 49996291 | 49996287 | ID=Msa0332750-mRNA-1:cds;Parent=Msa0332750-mRNA-1 |
| chr2_4 | CDS | 49996222 | 49996277 | 49996222 | ID=Msa0332750-mRNA-1:cds;Parent=Msa0332750-mRNA-1 |
| chr2_4 | CDS | 49994876 | 49994969 | 49994876 | ID=Msa0332750-mRNA-1:cds;Parent=Msa0332750-mRNA-1 |
| chr2_4 | CDS | 49994430 | 49994500 | 49994430 | ID=Msa0332750-mRNA-1:cds;Parent=Msa0332750-mRNA-1 |
| chr2_4 | CDS | 49993114 | 49993127 | 49993114 | ID=Msa0332750-mRNA-1:cds;Parent=Msa0332750-mRNA-1 |
| chr2_4 | three_prime_UTR | 49992933 | 49993113 | 49992933 | ID=Msa0332750-mRNA-1:three_prime_utr;Parent=Msa0332750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
