AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333130 MtrunA17_Chr2g0316331 96.581 234 8 0 40 273 216 449 6.75e-172 482
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333130 AT5G20040.1 56.957 230 97 1 40 269 220 447 1.57e-92 281
Msa0333130 AT5G20040.3 55.508 236 97 2 40 269 220 453 7.11e-90 275
Msa0333130 AT5G20040.2 55.652 230 96 2 40 269 220 443 6.67e-88 269

Find 125 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATTGTTATCCTATTT+TGG 0.138618 2_4:-50774694 Msa0333130:CDS
CTTCGCTCTCTTACAATTTC+CGG 0.159027 2_4:-50779669 Msa0333130:five_prime_UTR
GCTTGAATTAGCTACATATT+TGG 0.174201 2_4:-50774617 Msa0333130:three_prime_UTR
GGATACCATATGATTCTTTC+AGG 0.190617 2_4:-50777246 Msa0333130:CDS
CAGGCCATGGATTACTTAAT+AGG 0.213819 2_4:-50776189 Msa0333130:CDS
AGGATCCTGGTTTGCGTAAA+AGG 0.239175 2_4:+50774416 None:intergenic
AGGAGTATTGCAGGTTAAAT+AGG 0.255838 2_4:-50774586 Msa0333130:three_prime_UTR
GAGAAGGTGATAGTTATTTC+TGG 0.257660 2_4:-50779601 Msa0333130:five_prime_UTR
ATATTACTCTAGATAATAAT+TGG 0.265851 2_4:+50779812 None:intergenic
AGCGAAGTTGCTCGGAAAAT+TGG 0.275218 2_4:+50779685 None:intergenic
ACTCCGTTGTTCATCATCTT+TGG 0.296832 2_4:+50779745 None:intergenic
TAAAATACAAGGTTCATATA+TGG 0.298492 2_4:-50777856 Msa0333130:intron
CTACATATTTGGAATTATAA+AGG 0.302459 2_4:-50774606 Msa0333130:three_prime_UTR
AGGCTTACCGCACCAGAAAT+AGG 0.314218 2_4:-50774818 Msa0333130:intron
TTCTGTATCCATTCCAAAAT+AGG 0.315245 2_4:+50774681 None:intergenic
GTCGTGTTCCGATTGTTGTT+GGG 0.316625 2_4:-50778467 Msa0333130:five_prime_UTR
CGGTGTGAAGATATGATATT+AGG 0.344759 2_4:-50777064 Msa0333130:intron
TAATATCTCTCGACATTCTA+AGG 0.349282 2_4:+50774868 None:intergenic
ATATGATTCTTTCAGGGAAC+AGG 0.349378 2_4:-50777239 Msa0333130:CDS
ATTTCTGGACCCACCGGTTC+CGG 0.350702 2_4:-50779586 Msa0333130:five_prime_UTR
GCTCGGAAAATTGGATGTTC+CGG 0.352035 2_4:+50779694 None:intergenic
GGTCGTGTTCCGATTGTTGT+TGG 0.354013 2_4:-50778468 Msa0333130:five_prime_UTR
ACTGCTATATGTTGGACCTT+TGG 0.358311 2_4:+50777712 None:intergenic
TGTTAGTGCCGATTCTGTTC+AGG 0.360188 2_4:-50779515 Msa0333130:intron
GAATTATAAAGGAGTATTGC+AGG 0.361214 2_4:-50774595 Msa0333130:three_prime_UTR
TTTCAAAAGATATAAATATA+TGG 0.365418 2_4:+50777303 None:intergenic
GATAACATCTCAAGCTTGTA+TGG 0.369477 2_4:-50777803 Msa0333130:five_prime_UTR
CTCGGAAAATTGGATGTTCC+GGG 0.370881 2_4:+50779695 None:intergenic
TGAATGATTGGTACCGATTA+CGG 0.374646 2_4:-50777690 Msa0333130:five_prime_UTR
CTCGACATTCTAAGGTGTTC+GGG 0.375668 2_4:+50774876 None:intergenic
TCTAGATAATAATTGGATAA+AGG 0.378778 2_4:+50779819 None:intergenic
ACTAACCTTTACCAAAAGAT+TGG 0.381185 2_4:-50777585 Msa0333130:five_prime_UTR
TCTCTAGACTACGCCGTAAT+CGG 0.385182 2_4:+50777677 None:intergenic
TATTTATCAGATTATTCTGT+TGG 0.385240 2_4:-50778540 Msa0333130:intron
TTTGTTGGAGAGTTGGAGTT+TGG 0.386503 2_4:+50776813 None:intergenic
GTAGTCTAACTTTGCTGAAT+CGG 0.387153 2_4:+50777147 None:intergenic
TTTCGTCACTGCATCATTAA+CGG 0.390206 2_4:-50779638 Msa0333130:five_prime_UTR
GCAGAGGCTTTAGGCACATC+TGG 0.392567 2_4:+50777829 None:intergenic
TCTACAAATCAATTGATTAT+CGG 0.397595 2_4:-50777084 Msa0333130:CDS
GTTATCTCTGCAGAGGCTTT+AGG 0.398015 2_4:+50777820 None:intergenic
TCTCGACATTCTAAGGTGTT+CGG 0.404470 2_4:+50774875 None:intergenic
CCGCACGTGCCTCCGCCTCC+CGG 0.415823 2_4:-50779713 Msa0333130:five_prime_UTR
AACATATAGCAGTGAATGAT+TGG 0.419947 2_4:-50777702 Msa0333130:five_prime_UTR
GCCTTCTGTCTGAGGCTCAA+TGG 0.420564 2_4:-50776857 Msa0333130:CDS
GCGTAGTCTAGAGATTATTA+AGG 0.424856 2_4:-50777668 Msa0333130:five_prime_UTR
AACTCTCCAACAAAAGCAAT+TGG 0.427647 2_4:-50776804 Msa0333130:CDS
TTAGGAAGTGCCGCATCATC+TGG 0.429156 2_4:-50778715 Msa0333130:intron
TCTTTGATTGCAGGAGGGGA+TGG 0.439720 2_4:-50776879 Msa0333130:intron
GTATGTATATGTGGAATGTA+TGG 0.442418 2_4:-50777368 Msa0333130:CDS
GCTCAATGGCTTATTGATAT+CGG 0.444199 2_4:-50776843 Msa0333130:CDS
CATTGCGAGACGGCTCTTAC+CGG 0.451232 2_4:+50779567 None:intergenic
ATGAGAAAGACAGGCAAGAA+TGG 0.457909 2_4:+50777532 None:intergenic
ACCTTTCTATCATTTAATGA+AGG 0.458751 2_4:+50778928 None:intergenic
GAACTCGCTAAACGCCTCAA+TGG 0.461709 2_4:-50779544 Msa0333130:five_prime_UTR
AAAGATTTCCATTCTGATTG+TGG 0.464882 2_4:+50774904 None:intergenic
GATACCATATGATTCTTTCA+GGG 0.466118 2_4:-50777245 Msa0333130:CDS
TCGCGAAACGACAGTTGACT+TGG 0.470955 2_4:-50775468 Msa0333130:CDS
AAATTGGATGTTCCGGGAGG+CGG 0.480885 2_4:+50779701 None:intergenic
AATACCTCTAAGTTCTTGAC+TGG 0.482470 2_4:-50777610 Msa0333130:five_prime_UTR
TCGTGTTCCGATTGTTGTTG+GGG 0.487543 2_4:-50778466 Msa0333130:five_prime_UTR
GGTCAAGTCTGTCGCTAGAA+AGG 0.487687 2_4:+50777107 None:intergenic
TTGGATGTTCCGGGAGGCGG+AGG 0.491724 2_4:+50779704 None:intergenic
GTATCCAGTCAAGAACTTAG+AGG 0.492473 2_4:+50777606 None:intergenic
CACTAACAATTTCGCCATTG+AGG 0.492621 2_4:+50779530 None:intergenic
TCTACATAAAAGTCAACAAA+AGG 0.498727 2_4:+50774530 None:intergenic
AATTCATACCTGAACAGAAT+CGG 0.498815 2_4:+50779507 None:intergenic
AGGGGATGGCCTTCTGTCTG+AGG 0.502583 2_4:-50776865 Msa0333130:CDS
ATTTATCAGATTATTCTGTT+GGG 0.508010 2_4:-50778539 Msa0333130:intron
ATAATGAAAATGAGAAAGAC+AGG 0.512030 2_4:+50777523 None:intergenic
TATGATGACATCAAGGATCC+TGG 0.512314 2_4:+50774403 None:intergenic
TCGAATAGCTGCTAAACTAA+AGG 0.513714 2_4:-50774838 Msa0333130:CDS
GCCTTCATTAAATGATAGAA+AGG 0.513937 2_4:-50778929 Msa0333130:intron
ATATATTTCAGAAAATTCAA+TGG 0.514366 2_4:+50777336 None:intergenic
GTAATGAACATATTTACCAT+TGG 0.516604 2_4:-50775441 Msa0333130:CDS
ACGGCTCTTACCGGAACCGG+TGG 0.523860 2_4:+50779576 None:intergenic
TGTTCCCTGAAAGAATCATA+TGG 0.526900 2_4:+50777241 None:intergenic
CTGGGAAGCTGCTGTGCAGT+TGG 0.528040 2_4:-50777752 Msa0333130:five_prime_UTR
TACAGAAGACTCAGAAGTGA+AGG 0.532598 2_4:-50774665 Msa0333130:exon
AATCATTCACTGCTATATGT+TGG 0.534947 2_4:+50777704 None:intergenic
AAGACTCAGAAGTGAAGGGA+TGG 0.547384 2_4:-50774660 Msa0333130:exon
GATGCATACCACAATCAGAA+TGG 0.547399 2_4:-50774912 Msa0333130:CDS
GAGACGGCTCTTACCGGAAC+CGG 0.549004 2_4:+50779573 None:intergenic
TTAATAGGATGCAGAGAACA+AGG 0.553374 2_4:-50776174 Msa0333130:CDS
AATTACAGAGAAATGACGAC+TGG 0.556833 2_4:-50777771 Msa0333130:five_prime_UTR
CAAAAGGATGTTAACAAGCA+AGG 0.558369 2_4:+50774546 None:intergenic
GTGTATAAGGGTCTTGATGT+TGG 0.558699 2_4:-50778961 Msa0333130:five_prime_UTR
GCCATTGAGCCTCAGACAGA+AGG 0.563993 2_4:+50776856 None:intergenic
CGGTAAGAGCCGTCTCGCAA+TGG 0.565346 2_4:-50779566 Msa0333130:five_prime_UTR
TGTAAGAGAGCGAAGTTGCT+CGG 0.566366 2_4:+50779677 None:intergenic
GGAAGCTGCTGTGCAGTTGG+TGG 0.567913 2_4:-50777749 Msa0333130:five_prime_UTR
GACATACTTCATCCATCTGA+AGG 0.571668 2_4:-50778690 Msa0333130:intron
TGAACATTATGATGACATCA+AGG 0.571904 2_4:+50774396 None:intergenic
GCATCCTATTAAGTAATCCA+TGG 0.573382 2_4:+50776185 None:intergenic
ATAGTTATTTCTGGACCCAC+CGG 0.573440 2_4:-50779592 Msa0333130:five_prime_UTR
GATAATCAATTGATTTGTAG+AGG 0.576340 2_4:+50777086 None:intergenic
CCGGGAGGCGGAGGCACGTG+CGG 0.577791 2_4:+50779713 None:intergenic
GTTTAGAAGCGTCAAGCCAA+TGG 0.583750 2_4:+50775425 None:intergenic
GCACTGGACTGTATTTAAGA+TGG 0.588035 2_4:-50778443 Msa0333130:intron
AAAGAAAACAGACCTTCAGA+TGG 0.597193 2_4:+50778678 None:intergenic
CAAAATACCTATTTCTGGTG+CGG 0.602995 2_4:+50774811 None:intergenic
TATGGTATCCGAAAAGCAGA+AGG 0.603536 2_4:+50777259 None:intergenic
AATAGGATGCAGAGAACAAG+GGG 0.606555 2_4:-50776172 Msa0333130:CDS
TAGCGAGTTCCATTGCGAGA+CGG 0.606605 2_4:+50779557 None:intergenic
GGAGAAGAAGAAGAAAGAGA+AGG 0.607033 2_4:-50779617 Msa0333130:five_prime_UTR
TTGAGATGTTATCTCTGCAG+AGG 0.613063 2_4:+50777813 None:intergenic
TAATAGGATGCAGAGAACAA+GGG 0.615293 2_4:-50776173 Msa0333130:CDS
ACATTGAATAAATAAATGCA+TGG 0.617813 2_4:+50777478 None:intergenic
GGTGATTATAGAGTTGCTGA+TGG 0.618618 2_4:-50777217 Msa0333130:CDS
GTGCAGTTGGTGGTAAAAGC+AGG 0.620539 2_4:-50777739 Msa0333130:five_prime_UTR
GCTTGACGCTTCTAAACCTG+TGG 0.623923 2_4:-50775419 Msa0333130:intron
TATGATTCTTTCAGGGAACA+GGG 0.627524 2_4:-50777238 Msa0333130:CDS
GGTAAAAGCAGGTGATCCAA+AGG 0.631846 2_4:-50777728 Msa0333130:five_prime_UTR
CGTGTTCCGATTGTTGTTGG+GGG 0.635484 2_4:-50778465 Msa0333130:five_prime_UTR
ATCCTGGTTTGCGTAAAAGG+AGG 0.645026 2_4:+50774419 None:intergenic
ACAGAAGACTCAGAAGTGAA+GGG 0.645454 2_4:-50774664 Msa0333130:exon
ATGCATTTATTTATTCAATG+TGG 0.655204 2_4:-50777476 Msa0333130:five_prime_UTR
ATCATGAATGAAGTTCAGAA+CGG 0.659921 2_4:+50774932 None:intergenic
ATTACAGAGAAATGACGACT+GGG 0.664187 2_4:-50777770 Msa0333130:five_prime_UTR
CGGCTCTTACCGGAACCGGT+GGG 0.678594 2_4:+50779577 None:intergenic
GGTATCCGAAAAGCAGAAGG+AGG 0.686824 2_4:+50777262 None:intergenic
AGTATGTCAACCAGATGATG+CGG 0.688771 2_4:+50778705 None:intergenic
GGAAAATTGGATGTTCCGGG+AGG 0.707103 2_4:+50779698 None:intergenic
AGTCCAAAGATGATGAACAA+CGG 0.709326 2_4:-50779748 Msa0333130:five_prime_UTR
ACAAGATCTATTCTTGACAA+CGG 0.716891 2_4:-50778489 Msa0333130:five_prime_UTR
ATAGGATGCAGAGAACAAGG+GGG 0.808450 2_4:-50776171 Msa0333130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAAGTGATAAAT+CGG - chr2_4:50775066-50775085 Msa0333130:intron 10.0%
!! TTTCAAAAGATATAAATATA+TGG + chr2_4:50776932-50776951 None:intergenic 10.0%
!!! TATATTTATATCTTTTGAAA+TGG - chr2_4:50776932-50776951 Msa0333130:intron 10.0%
!! AAAATTCTTATAAGTAAAAA+AGG + chr2_4:50779019-50779038 None:intergenic 10.0%
!!! AATTTTTAGAACTATTTTAA+TGG - chr2_4:50779033-50779052 Msa0333130:intron 10.0%
!! ATATTACTCTAGATAATAAT+TGG + chr2_4:50774423-50774442 None:intergenic 15.0%
!!! TTTTGTTTTGTTTTGTTTTT+TGG - chr2_4:50775494-50775513 Msa0333130:intron 15.0%
!!! AATTAGTTTCAAATTACAAT+TGG + chr2_4:50775670-50775689 None:intergenic 15.0%
!! TTATACAATAATATAGTATC+AGG - chr2_4:50776027-50776046 Msa0333130:intron 15.0%
!! TATACAATAATATAGTATCA+GGG - chr2_4:50776028-50776047 Msa0333130:intron 15.0%
!! ATATATTTCAGAAAATTCAA+TGG + chr2_4:50776899-50776918 None:intergenic 15.0%
!! ATTTAATAAATTCCACTAAA+TGG + chr2_4:50777726-50777745 None:intergenic 15.0%
!! TTCATGTATACTTTAAATTA+TGG - chr2_4:50777875-50777894 Msa0333130:intron 15.0%
!!! TTTTGTTTTACATAAGATAA+TGG - chr2_4:50778149-50778168 Msa0333130:intron 15.0%
!!! TAACTATTACTTCTAAAATT+GGG + chr2_4:50778952-50778971 None:intergenic 15.0%
!!! TTAACTATTACTTCTAAAAT+TGG + chr2_4:50778953-50778972 None:intergenic 15.0%
!!! TTTTAGAAGTAATAGTTAAA+TGG - chr2_4:50778954-50778973 Msa0333130:five_prime_UTR 15.0%
!!! TAATAATTGTTTCTATATGA+AGG - chr2_4:50779501-50779520 Msa0333130:intron 15.0%
!! TCTAGATAATAATTGGATAA+AGG + chr2_4:50774416-50774435 None:intergenic 20.0%
!!! TCTGCTCTTTTTTTTTTTTT+GGG + chr2_4:50774821-50774840 None:intergenic 20.0%
!!! TTCTGCTCTTTTTTTTTTTT+TGG + chr2_4:50774822-50774841 None:intergenic 20.0%
!!! AACGTATAACTCTTTTTTTT+TGG + chr2_4:50775190-50775209 None:intergenic 20.0%
!!! GATGTTTTCTTTATTCAATA+CGG - chr2_4:50775227-50775246 Msa0333130:intron 20.0%
!!! TTTTGTTTTGTTTTTTGGTT+AGG - chr2_4:50775499-50775518 Msa0333130:intron 20.0%
!! TATTTATCAGATTATTCTGT+TGG - chr2_4:50775692-50775711 Msa0333130:intron 20.0%
!! ATTTATCAGATTATTCTGTT+GGG - chr2_4:50775693-50775712 Msa0333130:intron 20.0%
!!! TCTTTGATCTTTAAAATACA+AGG - chr2_4:50776365-50776384 Msa0333130:intron 20.0%
!! TAAAATACAAGGTTCATATA+TGG - chr2_4:50776376-50776395 Msa0333130:intron 20.0%
!! ACATTGAATAAATAAATGCA+TGG + chr2_4:50776757-50776776 None:intergenic 20.0%
!! ATGCATTTATTTATTCAATG+TGG - chr2_4:50776756-50776775 Msa0333130:intron 20.0%
!! ATACATACAAAGAAAAATAC+AGG + chr2_4:50776852-50776871 None:intergenic 20.0%
!!! TTTTTCTTTGTATGTATATG+TGG - chr2_4:50776855-50776874 Msa0333130:CDS 20.0%
!! TCTACAAATCAATTGATTAT+CGG - chr2_4:50777148-50777167 Msa0333130:CDS 20.0%
!! TATGATATTAGGTAATTAAC+TGG - chr2_4:50777179-50777198 Msa0333130:CDS 20.0%
!! CTCAAATAAAGAAATAGATT+TGG - chr2_4:50777520-50777539 Msa0333130:five_prime_UTR 20.0%
!! CATGCTTTAATAAATATCAT+TGG - chr2_4:50777571-50777590 Msa0333130:five_prime_UTR 20.0%
!! TATTTATTCTTTCCATTTAG+TGG - chr2_4:50777711-50777730 Msa0333130:five_prime_UTR 20.0%
!!! TTTAAAGTATACATGAACAT+GGG + chr2_4:50777872-50777891 None:intergenic 20.0%
!!! ATTTAAAGTATACATGAACA+TGG + chr2_4:50777873-50777892 None:intergenic 20.0%
!! TTTAAATTATGGTTGCAATT+CGG - chr2_4:50777886-50777905 Msa0333130:intron 20.0%
!! CAAAAATGCAAATATCATAT+AGG + chr2_4:50777970-50777989 None:intergenic 20.0%
!! TTTGATATAAATAGTGAGAA+TGG - chr2_4:50777986-50778005 Msa0333130:intron 20.0%
!!! GTGTTTTTTTTTTATGTTCA+TGG + chr2_4:50778241-50778260 None:intergenic 20.0%
!!! TTTCTTTTTAAAGAAAAAGC+TGG - chr2_4:50778554-50778573 Msa0333130:intron 20.0%
!! TATACATAAGAAATTAGATG+AGG + chr2_4:50778888-50778907 None:intergenic 20.0%
!! ATCTAATTTCTTATGTATAC+TGG - chr2_4:50778889-50778908 Msa0333130:intron 20.0%
!! GCATAAGCTTAAAAAAATTA+CGG + chr2_4:50779250-50779269 None:intergenic 20.0%
!! AAAAACAAAATACCTATTTC+TGG + chr2_4:50779429-50779448 None:intergenic 20.0%
!!! CTACATATTTGGAATTATAA+AGG - chr2_4:50779626-50779645 Msa0333130:five_prime_UTR 20.0%
!! CAAGTATTTCAAGTGATTTA+AGG - chr2_4:50774912-50774931 Msa0333130:CDS 25.0%
!! TGTGAATTTTGTATAATCGT+AGG - chr2_4:50774981-50775000 Msa0333130:intron 25.0%
! GCAATTAATTACTATGTGTA+TGG - chr2_4:50775126-50775145 Msa0333130:intron 25.0%
! AAAAGAGTTATACGTTACAA+TGG - chr2_4:50775194-50775213 Msa0333130:intron 25.0%
!!! CTTTTTTTACAGGTGTATAA+GGG - chr2_4:50775259-50775278 Msa0333130:intron 25.0%
! ACCTTTCTATCATTTAATGA+AGG + chr2_4:50775307-50775326 None:intergenic 25.0%
! ATTTAGTTGCAACATAGAAA+TGG - chr2_4:50775441-50775460 Msa0333130:CDS 25.0%
! TTTAGTTGCAACATAGAAAT+GGG - chr2_4:50775442-50775461 Msa0333130:CDS 25.0%
! TTACAATTGGCCAAAATAAA+AGG + chr2_4:50775657-50775676 None:intergenic 25.0%
! ACAAAGTAGGTAATTGAAAA+AGG + chr2_4:50775819-50775838 None:intergenic 25.0%
! GAATATGTAGTTAACAAAGT+AGG + chr2_4:50775832-50775851 None:intergenic 25.0%
! ATTTCCTTATTGTGAAATAG+TGG - chr2_4:50775862-50775881 Msa0333130:intron 25.0%
!! AAGAGAGCATAAATAGTAAA+TGG - chr2_4:50775913-50775932 Msa0333130:intron 25.0%
! TATACTTTGTAGGTATACTA+TGG - chr2_4:50776118-50776137 Msa0333130:CDS 25.0%
!! TTTATCCAATCTTTTGGTAA+AGG + chr2_4:50776655-50776674 None:intergenic 25.0%
! ATAATGAAAATGAGAAAGAC+AGG + chr2_4:50776712-50776731 None:intergenic 25.0%
!!! GATAATCAATTGATTTGTAG+AGG + chr2_4:50777149-50777168 None:intergenic 25.0%
! TCTAATAGCAATAAATCTCT+TGG - chr2_4:50777327-50777346 Msa0333130:CDS 25.0%
! GATATTTATTAAAGCATGTC+TGG + chr2_4:50777569-50777588 None:intergenic 25.0%
!! TTAACATTCTCCCAATTTTT+AGG - chr2_4:50777595-50777614 Msa0333130:five_prime_UTR 25.0%
! TCCAAAAGCTTAAATAAACA+GGG + chr2_4:50777621-50777640 None:intergenic 25.0%
! TTCCAAAAGCTTAAATAAAC+AGG + chr2_4:50777622-50777641 None:intergenic 25.0%
! TATGTAAAAATACAGCATGT+AGG + chr2_4:50777945-50777964 None:intergenic 25.0%
!! GCATTTTCTAATTACAACAA+TGG + chr2_4:50778511-50778530 None:intergenic 25.0%
! GTAATGAACATATTTACCAT+TGG - chr2_4:50778791-50778810 Msa0333130:intron 25.0%
! TTCTTATAAGTAAAAAAGGC+AGG + chr2_4:50779015-50779034 None:intergenic 25.0%
!!! GGTATTTTGTTTTTAGTATC+TGG - chr2_4:50779435-50779454 Msa0333130:intron 25.0%
!!! ATTGTTATCCTATTTTGGAA+TGG - chr2_4:50779543-50779562 Msa0333130:five_prime_UTR 25.0%
! TCTACATAAAAGTCAACAAA+AGG + chr2_4:50779705-50779724 None:intergenic 25.0%
AATTCATACCTGAACAGAAT+CGG + chr2_4:50774728-50774747 None:intergenic 30.0%
TAATCAAGGTAGCTAAAATC+AGG + chr2_4:50775029-50775048 None:intergenic 30.0%
!!! TGATTTTAGCTACCTTGATT+AGG - chr2_4:50775028-50775047 Msa0333130:intron 30.0%
AAAAACAAACCTCCTAATCA+AGG + chr2_4:50775043-50775062 None:intergenic 30.0%
AATCGGTTAAGAATGATATG+TGG - chr2_4:50775083-50775102 Msa0333130:intron 30.0%
!!! GCTTTTTTTACAGGTGTATA+AGG - chr2_4:50775258-50775277 Msa0333130:intron 30.0%
GCCTTCATTAAATGATAGAA+AGG - chr2_4:50775303-50775322 Msa0333130:intron 30.0%
!! TTTTCAGAGGCCTTTTATTT+TGG - chr2_4:50775644-50775663 Msa0333130:intron 30.0%
ACAAGATCTATTCTTGACAA+CGG - chr2_4:50775743-50775762 Msa0333130:intron 30.0%
TGTACAGAAGACAAATCAAT+TGG + chr2_4:50776198-50776217 None:intergenic 30.0%
GTGATAATTCACTAAAACAG+TGG + chr2_4:50776260-50776279 None:intergenic 30.0%
TACTTATAGACCAGTTTATG+TGG - chr2_4:50776320-50776339 Msa0333130:intron 30.0%
AATCATTCACTGCTATATGT+TGG + chr2_4:50776531-50776550 None:intergenic 30.0%
AACATATAGCAGTGAATGAT+TGG - chr2_4:50776530-50776549 Msa0333130:intron 30.0%
ACTAACCTTTACCAAAAGAT+TGG - chr2_4:50776647-50776666 Msa0333130:intron 30.0%
!! GAGAGTTTTATCCAATCTTT+TGG + chr2_4:50776661-50776680 None:intergenic 30.0%
GTATGTATATGTGGAATGTA+TGG - chr2_4:50776864-50776883 Msa0333130:CDS 30.0%
GATACCATATGATTCTTTCA+GGG - chr2_4:50776987-50777006 Msa0333130:intron 30.0%
ATAAACAGGGCCTAAAAATT+GGG + chr2_4:50777608-50777627 None:intergenic 30.0%
AATAAACAGGGCCTAAAAAT+TGG + chr2_4:50777609-50777628 None:intergenic 30.0%
! AGAGTAGCTTCTGAAAATAA+CGG + chr2_4:50777779-50777798 None:intergenic 30.0%
CTGAATTTCAAAAAGCTTCA+AGG - chr2_4:50778119-50778138 Msa0333130:intron 30.0%
CATAATTTAGCCAATGTCAA+GGG + chr2_4:50778177-50778196 None:intergenic 30.0%
ACATAATTTAGCCAATGTCA+AGG + chr2_4:50778178-50778197 None:intergenic 30.0%
ACAACTTAAAGTATGCTATG+TGG - chr2_4:50778198-50778217 Msa0333130:intron 30.0%
CAACTTAAAGTATGCTATGT+GGG - chr2_4:50778199-50778218 Msa0333130:intron 30.0%
TGTAATTAGAAAATGCATGC+TGG - chr2_4:50778515-50778534 Msa0333130:five_prime_UTR 30.0%
GTAATTAGAAAATGCATGCT+GGG - chr2_4:50778516-50778535 Msa0333130:five_prime_UTR 30.0%
!!! TTACTTGATTTGGTTTTTGC+AGG - chr2_4:50778737-50778756 Msa0333130:intron 30.0%
AGATTCAATCATTATACCAC+AGG + chr2_4:50778832-50778851 None:intergenic 30.0%
GGTATAGTTGTTAGTATCTA+GGG + chr2_4:50778994-50779013 None:intergenic 30.0%
AGGTATAGTTGTTAGTATCT+AGG + chr2_4:50778995-50779014 None:intergenic 30.0%
ACGTGCTTTAACATACTTTA+TGG - chr2_4:50779111-50779130 Msa0333130:intron 30.0%
! ACTTTATGGAAGTCCTTTTA+TGG - chr2_4:50779125-50779144 Msa0333130:intron 30.0%
TGCATGTTGTTGTATGTAAT+TGG - chr2_4:50779194-50779213 Msa0333130:intron 30.0%
ATGTTGTTGTATGTAATTGG+AGG - chr2_4:50779197-50779216 Msa0333130:intron 30.0%
TATGATGAACAACTTATTCC+AGG - chr2_4:50779274-50779293 Msa0333130:intron 30.0%
ATCATGAATGAAGTTCAGAA+CGG + chr2_4:50779303-50779322 None:intergenic 30.0%
AAAGATTTCCATTCTGATTG+TGG + chr2_4:50779331-50779350 None:intergenic 30.0%
TAATATCTCTCGACATTCTA+AGG + chr2_4:50779367-50779386 None:intergenic 30.0%
!!! ATATGAAGGCATTTTGTGAA+CGG - chr2_4:50779515-50779534 Msa0333130:intron 30.0%
! GGAAGATTGTTATCCTATTT+TGG - chr2_4:50779538-50779557 Msa0333130:five_prime_UTR 30.0%
TTCTGTATCCATTCCAAAAT+AGG + chr2_4:50779554-50779573 None:intergenic 30.0%
GCTTGAATTAGCTACATATT+TGG - chr2_4:50779615-50779634 Msa0333130:five_prime_UTR 30.0%
!! GAATTATAAAGGAGTATTGC+AGG - chr2_4:50779637-50779656 Msa0333130:five_prime_UTR 30.0%
AGTCCAAAGATGATGAACAA+CGG - chr2_4:50774484-50774503 Msa0333130:three_prime_UTR 35.0%
ATGATGCAGTGACGAAAAAA+CGG + chr2_4:50774591-50774610 None:intergenic 35.0%
TTTCGTCACTGCATCATTAA+CGG - chr2_4:50774594-50774613 Msa0333130:three_prime_UTR 35.0%
! GAGAAGGTGATAGTTATTTC+TGG - chr2_4:50774631-50774650 Msa0333130:three_prime_UTR 35.0%
GAGCAGAATTTGAACTAACA+AGG - chr2_4:50774834-50774853 Msa0333130:CDS 35.0%
AAGGTAGCTAAAATCAGGAA+GGG + chr2_4:50775024-50775043 None:intergenic 35.0%
!! TTTTAGCTACCTTGATTAGG+AGG - chr2_4:50775031-50775050 Msa0333130:intron 35.0%
TACACCTGTAAAAAAAGCCA+CGG + chr2_4:50775256-50775275 None:intergenic 35.0%
AAAGAAAACAGACCTTCAGA+TGG + chr2_4:50775557-50775576 None:intergenic 35.0%
ACAGCCACTATTTCACAATA+AGG + chr2_4:50775869-50775888 None:intergenic 35.0%
ACTTGCGGAAATAAGAAAAG+TGG + chr2_4:50775942-50775961 None:intergenic 35.0%
ATGACTTCATCAGTAACTTG+CGG + chr2_4:50775957-50775976 None:intergenic 35.0%
GGGAAAAAGTAATGCAGAAT+TGG - chr2_4:50776048-50776067 Msa0333130:intron 35.0%
! AAGTAATGCAGAATTGGTTC+TGG - chr2_4:50776054-50776073 Msa0333130:intron 35.0%
AGGATGTGCATATACTTTGT+AGG - chr2_4:50776108-50776127 Msa0333130:intron 35.0%
! CTATGGTGATTTACTAGTCT+TGG - chr2_4:50776135-50776154 Msa0333130:CDS 35.0%
GGTATATACTCCACATAAAC+TGG + chr2_4:50776333-50776352 None:intergenic 35.0%
GATCAAAGAACAGAACTCAT+AGG + chr2_4:50776354-50776373 None:intergenic 35.0%
GATAACATCTCAAGCTTGTA+TGG - chr2_4:50776429-50776448 Msa0333130:intron 35.0%
AATTACAGAGAAATGACGAC+TGG - chr2_4:50776461-50776480 Msa0333130:intron 35.0%
ATTACAGAGAAATGACGACT+GGG - chr2_4:50776462-50776481 Msa0333130:intron 35.0%
!! TGAATGATTGGTACCGATTA+CGG - chr2_4:50776542-50776561 Msa0333130:intron 35.0%
GCGTAGTCTAGAGATTATTA+AGG - chr2_4:50776564-50776583 Msa0333130:intron 35.0%
AATACCTCTAAGTTCTTGAC+TGG - chr2_4:50776622-50776641 Msa0333130:intron 35.0%
GGATACCATATGATTCTTTC+AGG - chr2_4:50776986-50777005 Msa0333130:intron 35.0%
TGTTCCCTGAAAGAATCATA+TGG + chr2_4:50776994-50777013 None:intergenic 35.0%
ATATGATTCTTTCAGGGAAC+AGG - chr2_4:50776993-50777012 Msa0333130:intron 35.0%
TATGATTCTTTCAGGGAACA+GGG - chr2_4:50776994-50777013 Msa0333130:intron 35.0%
GTAGTCTAACTTTGCTGAAT+CGG + chr2_4:50777088-50777107 None:intergenic 35.0%
CGGTGTGAAGATATGATATT+AGG - chr2_4:50777168-50777187 Msa0333130:CDS 35.0%
GCTCAATGGCTTATTGATAT+CGG - chr2_4:50777389-50777408 Msa0333130:CDS 35.0%
!! AATTGCTTTTGTTGGAGAGT+TGG + chr2_4:50777429-50777448 None:intergenic 35.0%
AACTCTCCAACAAAAGCAAT+TGG - chr2_4:50777428-50777447 Msa0333130:five_prime_UTR 35.0%
!! CTGTAACCAATTGCTTTTGT+TGG + chr2_4:50777437-50777456 None:intergenic 35.0%
! GCCCTGTTTATTTAAGCTTT+TGG - chr2_4:50777617-50777636 Msa0333130:five_prime_UTR 35.0%
GCATCCTATTAAGTAATCCA+TGG + chr2_4:50778050-50778069 None:intergenic 35.0%
TTAATAGGATGCAGAGAACA+AGG - chr2_4:50778058-50778077 Msa0333130:intron 35.0%
TAATAGGATGCAGAGAACAA+GGG - chr2_4:50778059-50778078 Msa0333130:intron 35.0%
ACAGATGTTGTCAGAATACT+AGG + chr2_4:50778267-50778286 None:intergenic 35.0%
AGTATTCTGACAACATCTGT+TGG - chr2_4:50778267-50778286 Msa0333130:intron 35.0%
GTATTCTGACAACATCTGTT+GGG - chr2_4:50778268-50778287 Msa0333130:intron 35.0%
CCTTGACTTAATACATACCA+AGG + chr2_4:50778401-50778420 None:intergenic 35.0%
CCTTGGTATGTATTAAGTCA+AGG - chr2_4:50778398-50778417 Msa0333130:intron 35.0%
GGTATGTATTAAGTCAAGGA+TGG - chr2_4:50778402-50778421 Msa0333130:intron 35.0%
CTTTCTCAACTCAGTTAAGT+TGG - chr2_4:50778478-50778497 Msa0333130:five_prime_UTR 35.0%
TAACGTCATGATGCATAGTT+GGG + chr2_4:50778597-50778616 None:intergenic 35.0%
ATTTGGCAATGCTCTTGATT+TGG - chr2_4:50778668-50778687 Msa0333130:intron 35.0%
GTTTCGTCTCTTACTTGATT+TGG - chr2_4:50778727-50778746 Msa0333130:intron 35.0%
CACTACTTAGGTTCCATAAA+AGG + chr2_4:50779141-50779160 None:intergenic 35.0%
! CTTTTATGGAACCTAAGTAG+TGG - chr2_4:50779139-50779158 Msa0333130:intron 35.0%
GCATAAGATAACCACTACTT+AGG + chr2_4:50779153-50779172 None:intergenic 35.0%
TCGAATAGCTGCTAAACTAA+AGG - chr2_4:50779394-50779413 Msa0333130:intron 35.0%
!! CAAAATACCTATTTCTGGTG+CGG + chr2_4:50779424-50779443 None:intergenic 35.0%
!!! TATGAAGGCATTTTGTGAAC+GGG - chr2_4:50779516-50779535 Msa0333130:five_prime_UTR 35.0%
!! AGGAGTATTGCAGGTTAAAT+AGG - chr2_4:50779646-50779665 Msa0333130:five_prime_UTR 35.0%
CAAAAGGATGTTAACAAGCA+AGG + chr2_4:50779689-50779708 None:intergenic 35.0%
ACTCCGTTGTTCATCATCTT+TGG + chr2_4:50774490-50774509 None:intergenic 40.0%
CTTCGCTCTCTTACAATTTC+CGG - chr2_4:50774563-50774582 Msa0333130:three_prime_UTR 40.0%
GGAGAAGAAGAAGAAAGAGA+AGG - chr2_4:50774615-50774634 Msa0333130:three_prime_UTR 40.0%
!! ATAGTTATTTCTGGACCCAC+CGG - chr2_4:50774640-50774659 Msa0333130:three_prime_UTR 40.0%
CACTAACAATTTCGCCATTG+AGG + chr2_4:50774705-50774724 None:intergenic 40.0%
AGGTAGCTAAAATCAGGAAG+GGG + chr2_4:50775023-50775042 None:intergenic 40.0%
CAAGGTAGCTAAAATCAGGA+AGG + chr2_4:50775025-50775044 None:intergenic 40.0%
TTTATTCAATACGGCTTCCG+TGG - chr2_4:50775236-50775255 Msa0333130:intron 40.0%
GTGTATAAGGGTCTTGATGT+TGG - chr2_4:50775271-50775290 Msa0333130:intron 40.0%
ACAGACAATCCAAGTCACAA+TGG + chr2_4:50775401-50775420 None:intergenic 40.0%
AGTATGTCAACCAGATGATG+CGG + chr2_4:50775530-50775549 None:intergenic 40.0%
GACATACTTCATCCATCTGA+AGG - chr2_4:50775542-50775561 Msa0333130:intron 40.0%
ACGATGGAGAAATGTGTATG+AGG + chr2_4:50775620-50775639 None:intergenic 40.0%
CATACACATTTCTCCATCGT+TGG - chr2_4:50775620-50775639 Msa0333130:intron 40.0%
!!! TTCTGTTGGGCAGTTTTTTG+AGG - chr2_4:50775706-50775725 Msa0333130:intron 40.0%
GCACTGGACTGTATTTAAGA+TGG - chr2_4:50775789-50775808 Msa0333130:intron 40.0%
! TGCATGACTTGCGTAATTGA+AGG - chr2_4:50776088-50776107 Msa0333130:intron 40.0%
! AATACACGATCTGAAGCTAG+AGG - chr2_4:50776171-50776190 Msa0333130:CDS 40.0%
TTGAGATGTTATCTCTGCAG+AGG + chr2_4:50776422-50776441 None:intergenic 40.0%
ACTGCTATATGTTGGACCTT+TGG + chr2_4:50776523-50776542 None:intergenic 40.0%
GTATCCAGTCAAGAACTTAG+AGG + chr2_4:50776629-50776648 None:intergenic 40.0%
ATGAGAAAGACAGGCAAGAA+TGG + chr2_4:50776703-50776722 None:intergenic 40.0%
!!! CTTTTGAAATGGCAGTCTAG+TGG - chr2_4:50776943-50776962 Msa0333130:intron 40.0%
TATGGTATCCGAAAAGCAGA+AGG + chr2_4:50776976-50776995 None:intergenic 40.0%
GGTGATTATAGAGTTGCTGA+TGG - chr2_4:50777015-50777034 Msa0333130:intron 40.0%
! TCTTGGTTCTCTTTGATTGC+AGG - chr2_4:50777344-50777363 Msa0333130:CDS 40.0%
TTTGTTGGAGAGTTGGAGTT+TGG + chr2_4:50777422-50777441 None:intergenic 40.0%
GCTTGTGATTCACCAATTTC+AGG - chr2_4:50778024-50778043 Msa0333130:intron 40.0%
AGTAATCCATGGCCTGAAAT+TGG + chr2_4:50778039-50778058 None:intergenic 40.0%
! CAGGCCATGGATTACTTAAT+AGG - chr2_4:50778043-50778062 Msa0333130:intron 40.0%
AATAGGATGCAGAGAACAAG+GGG - chr2_4:50778060-50778079 Msa0333130:intron 40.0%
! GATAATGGTACCCTTGACAT+TGG - chr2_4:50778164-50778183 Msa0333130:intron 40.0%
!! TTGGGCAAGTTGATTGGTTA+TGG - chr2_4:50778286-50778305 Msa0333130:intron 40.0%
! AAGCTTTTCATGCTCAACCT+TGG - chr2_4:50778381-50778400 Msa0333130:intron 40.0%
TTAGAAAATGCATGCTGGGA+TGG - chr2_4:50778520-50778539 Msa0333130:five_prime_UTR 40.0%
TAGAAAATGCATGCTGGGAT+GGG - chr2_4:50778521-50778540 Msa0333130:five_prime_UTR 40.0%
CTAACGTCATGATGCATAGT+TGG + chr2_4:50778598-50778617 None:intergenic 40.0%
GTTCACAACCAGCAAAACAT+GGG + chr2_4:50778627-50778646 None:intergenic 40.0%
TGTTCACAACCAGCAAAACA+TGG + chr2_4:50778628-50778647 None:intergenic 40.0%
GTTGTGAACAGTAGTTTAGC+TGG - chr2_4:50778638-50778657 Msa0333130:intron 40.0%
TGAACAGTAGTTTAGCTGGT+TGG - chr2_4:50778642-50778661 Msa0333130:intron 40.0%
GAACAGTAGTTTAGCTGGTT+GGG - chr2_4:50778643-50778662 Msa0333130:intron 40.0%
GTTTAGCTGGTTGGGTTATT+TGG - chr2_4:50778651-50778670 Msa0333130:intron 40.0%
!!! GCTCTTGATTTGGTTTTTGC+AGG - chr2_4:50778678-50778697 Msa0333130:intron 40.0%
ATGAAGATGTAGTGCTCTAG+TGG + chr2_4:50778859-50778878 None:intergenic 40.0%
GATGCATACCACAATCAGAA+TGG - chr2_4:50779320-50779339 Msa0333130:intron 40.0%
!! TCTCGACATTCTAAGGTGTT+CGG + chr2_4:50779360-50779379 None:intergenic 40.0%
!!! ATGAAGGCATTTTGTGAACG+GGG - chr2_4:50779517-50779536 Msa0333130:five_prime_UTR 40.0%
TACAGAAGACTCAGAAGTGA+AGG - chr2_4:50779567-50779586 Msa0333130:five_prime_UTR 40.0%
ACAGAAGACTCAGAAGTGAA+GGG - chr2_4:50779568-50779587 Msa0333130:five_prime_UTR 40.0%
CTCGGAAAATTGGATGTTCC+GGG + chr2_4:50774540-50774559 None:intergenic 45.0%
GCTCGGAAAATTGGATGTTC+CGG + chr2_4:50774541-50774560 None:intergenic 45.0%
AGCGAAGTTGCTCGGAAAAT+TGG + chr2_4:50774550-50774569 None:intergenic 45.0%
TGTAAGAGAGCGAAGTTGCT+CGG + chr2_4:50774558-50774577 None:intergenic 45.0%
!! TGTTAGTGCCGATTCTGTTC+AGG - chr2_4:50774717-50774736 Msa0333130:intron 45.0%
!!! GCTTCCGTGGCTTTTTTTAC+AGG - chr2_4:50775249-50775268 Msa0333130:intron 45.0%
TGTTCCTTGCCATTGTGACT+TGG - chr2_4:50775389-50775408 Msa0333130:intron 45.0%
CAATCCAAGTCACAATGGCA+AGG + chr2_4:50775396-50775415 None:intergenic 45.0%
! CTCCATCGTTGGATTTTCAG+AGG - chr2_4:50775631-50775650 Msa0333130:intron 45.0%
!!! GGCAGTTTTTTGAGGATGCA+AGG - chr2_4:50775714-50775733 Msa0333130:intron 45.0%
! GTCGTGTTCCGATTGTTGTT+GGG - chr2_4:50775765-50775784 Msa0333130:intron 45.0%
! TCGTGTTCCGATTGTTGTTG+GGG - chr2_4:50775766-50775785 Msa0333130:intron 45.0%
GTTATCTCTGCAGAGGCTTT+AGG + chr2_4:50776415-50776434 None:intergenic 45.0%
GGTAAAAGCAGGTGATCCAA+AGG - chr2_4:50776504-50776523 Msa0333130:intron 45.0%
TCTCTAGACTACGCCGTAAT+CGG + chr2_4:50776558-50776577 None:intergenic 45.0%
!! GATCACCTCCTTCTGCTTTT+CGG - chr2_4:50776965-50776984 Msa0333130:intron 45.0%
TGGTTCTCTTTGATTGCAGG+AGG - chr2_4:50777347-50777366 Msa0333130:CDS 45.0%
GGTTCTCTTTGATTGCAGGA+GGG - chr2_4:50777348-50777367 Msa0333130:CDS 45.0%
GTTCTCTTTGATTGCAGGAG+GGG - chr2_4:50777349-50777368 Msa0333130:CDS 45.0%
GATTCACCAATTTCAGGCCA+TGG - chr2_4:50778030-50778049 Msa0333130:intron 45.0%
ATAGGATGCAGAGAACAAGG+GGG - chr2_4:50778061-50778080 Msa0333130:intron 45.0%
!! CATCTGTTGGGCAAGTTGAT+TGG - chr2_4:50778280-50778299 Msa0333130:intron 45.0%
TGCTTCACTATCTTGCCTGT+AGG - chr2_4:50778432-50778451 Msa0333130:intron 45.0%
CTATCTTGCCTGTAGGACAT+TGG - chr2_4:50778439-50778458 Msa0333130:intron 45.0%
CAACTAGACCAATGTCCTAC+AGG + chr2_4:50778450-50778469 None:intergenic 45.0%
! AGATGCTTCCCATGTTTTGC+TGG - chr2_4:50778616-50778635 Msa0333130:intron 45.0%
TCACGAAACGACAGTTGACT+TGG - chr2_4:50778705-50778724 Msa0333130:five_prime_UTR 45.0%
!! GTTTAGAAGCGTCAAGCCAA+TGG + chr2_4:50778810-50778829 None:intergenic 45.0%
CAACTGTCACACTTGCATTG+TGG - chr2_4:50779065-50779084 Msa0333130:intron 45.0%
TGAAGTTCAGAACGGTTTCC+TGG + chr2_4:50779295-50779314 None:intergenic 45.0%
!! CTCGACATTCTAAGGTGTTC+GGG + chr2_4:50779359-50779378 None:intergenic 45.0%
AAGACTCAGAAGTGAAGGGA+TGG - chr2_4:50779572-50779591 Msa0333130:five_prime_UTR 45.0%
! TTCCTCCTTTTACGCAAACC+AGG - chr2_4:50779811-50779830 Msa0333130:five_prime_UTR 45.0%
! ATCCTGGTTTGCGTAAAAGG+AGG + chr2_4:50779816-50779835 None:intergenic 45.0%
! AGGATCCTGGTTTGCGTAAA+AGG + chr2_4:50779819-50779838 None:intergenic 45.0%
AAATTGGATGTTCCGGGAGG+CGG + chr2_4:50774534-50774553 None:intergenic 50.0%
GGAAAATTGGATGTTCCGGG+AGG + chr2_4:50774537-50774556 None:intergenic 50.0%
TAGCGAGTTCCATTGCGAGA+CGG + chr2_4:50774678-50774697 None:intergenic 50.0%
GAACTCGCTAAACGCCTCAA+TGG - chr2_4:50774688-50774707 Msa0333130:CDS 50.0%
!! TTAGGAAGTGCCGCATCATC+TGG - chr2_4:50775517-50775536 Msa0333130:intron 50.0%
! GGCCTCTGAAAATCCAACGA+TGG + chr2_4:50775636-50775655 None:intergenic 50.0%
GGTCGTGTTCCGATTGTTGT+TGG - chr2_4:50775764-50775783 Msa0333130:intron 50.0%
! CGTGTTCCGATTGTTGTTGG+GGG - chr2_4:50775767-50775786 Msa0333130:intron 50.0%
!! GTGCAGTTGGTGGTAAAAGC+AGG - chr2_4:50776493-50776512 Msa0333130:intron 50.0%
GGTATCCGAAAAGCAGAAGG+AGG + chr2_4:50776973-50776992 None:intergenic 50.0%
GGTCAAGTCTGTCGCTAGAA+AGG + chr2_4:50777128-50777147 None:intergenic 50.0%
TCTTTGATTGCAGGAGGGGA+TGG - chr2_4:50777353-50777372 Msa0333130:CDS 50.0%
TCGCGAAACGACAGTTGACT+TGG - chr2_4:50778764-50778783 Msa0333130:intron 50.0%
GCTTGACGCTTCTAAACCTG+TGG - chr2_4:50778813-50778832 Msa0333130:intron 50.0%
AGGCTTACCGCACCAGAAAT+AGG - chr2_4:50779414-50779433 Msa0333130:intron 50.0%
CAGTGACGAAAAAACGGCGC+CGG + chr2_4:50774585-50774604 None:intergenic 55.0%
!! ATTTCTGGACCCACCGGTTC+CGG - chr2_4:50774646-50774665 Msa0333130:three_prime_UTR 55.0%
CATTGCGAGACGGCTCTTAC+CGG + chr2_4:50774668-50774687 None:intergenic 55.0%
CCAGTGCCCCCAACAACAAT+CGG + chr2_4:50775776-50775795 None:intergenic 55.0%
!! GCAGAGGCTTTAGGCACATC+TGG + chr2_4:50776406-50776425 None:intergenic 55.0%
! GCCTTCTGTCTGAGGCTCAA+TGG - chr2_4:50777375-50777394 Msa0333130:CDS 55.0%
GCCATTGAGCCTCAGACAGA+AGG + chr2_4:50777379-50777398 None:intergenic 55.0%
GAGACGGCTCTTACCGGAAC+CGG + chr2_4:50774662-50774681 None:intergenic 60.0%
CGGTAAGAGCCGTCTCGCAA+TGG - chr2_4:50774666-50774685 Msa0333130:exon 60.0%
! CCGATTGTTGTTGGGGGCAC+TGG - chr2_4:50775773-50775792 Msa0333130:intron 60.0%
CTGGGAAGCTGCTGTGCAGT+TGG - chr2_4:50776480-50776499 Msa0333130:intron 60.0%
GGAAGCTGCTGTGCAGTTGG+TGG - chr2_4:50776483-50776502 Msa0333130:intron 60.0%
AGGGGATGGCCTTCTGTCTG+AGG - chr2_4:50777367-50777386 Msa0333130:CDS 60.0%
CAAGGGGGTCAGAGTTCAGC+TGG - chr2_4:50778076-50778095 Msa0333130:intron 60.0%
TTGGATGTTCCGGGAGGCGG+AGG + chr2_4:50774531-50774550 None:intergenic 65.0%
CGGCTCTTACCGGAACCGGT+GGG + chr2_4:50774658-50774677 None:intergenic 65.0%
ACGGCTCTTACCGGAACCGG+TGG + chr2_4:50774659-50774678 None:intergenic 65.0%
!! CCGGGAGGCGGAGGCACGTG+CGG + chr2_4:50774522-50774541 None:intergenic 80.0%
! CCGCACGTGCCTCCGCCTCC+CGG - chr2_4:50774519-50774538 Msa0333130:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50774406 50779848 50774406 ID=Msa0333130;Name=Msa0333130
chr2_4 mRNA 50774406 50779848 50774406 ID=Msa0333130-mRNA-1;Parent=Msa0333130;Name=Msa0333130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=990|1|1|1|1|0.9|10|262|273
chr2_4 exon 50774406 50774731 50774406 ID=Msa0333130-mRNA-1:exon:15136;Parent=Msa0333130-mRNA-1
chr2_4 exon 50774819 50774958 50774819 ID=Msa0333130-mRNA-1:exon:15135;Parent=Msa0333130-mRNA-1
chr2_4 exon 50775420 50775495 50775420 ID=Msa0333130-mRNA-1:exon:15134;Parent=Msa0333130-mRNA-1
chr2_4 exon 50776114 50776208 50776114 ID=Msa0333130-mRNA-1:exon:15133;Parent=Msa0333130-mRNA-1
chr2_4 exon 50776794 50776888 50776794 ID=Msa0333130-mRNA-1:exon:15132;Parent=Msa0333130-mRNA-1
chr2_4 exon 50777065 50777867 50777065 ID=Msa0333130-mRNA-1:exon:15131;Parent=Msa0333130-mRNA-1
chr2_4 exon 50778444 50778552 50778444 ID=Msa0333130-mRNA-1:exon:15130;Parent=Msa0333130-mRNA-1
chr2_4 exon 50778691 50778733 50778691 ID=Msa0333130-mRNA-1:exon:15129;Parent=Msa0333130-mRNA-1
chr2_4 exon 50778930 50778983 50778930 ID=Msa0333130-mRNA-1:exon:15128;Parent=Msa0333130-mRNA-1
chr2_4 exon 50779516 50779848 50779516 ID=Msa0333130-mRNA-1:exon:15127;Parent=Msa0333130-mRNA-1
chr2_4 five_prime_UTR 50779516 50779848 50779516 ID=Msa0333130-mRNA-1:five_prime_utr;Parent=Msa0333130-mRNA-1
chr2_4 five_prime_UTR 50778930 50778983 50778930 ID=Msa0333130-mRNA-1:five_prime_utr;Parent=Msa0333130-mRNA-1
chr2_4 five_prime_UTR 50778691 50778733 50778691 ID=Msa0333130-mRNA-1:five_prime_utr;Parent=Msa0333130-mRNA-1
chr2_4 five_prime_UTR 50778444 50778552 50778444 ID=Msa0333130-mRNA-1:five_prime_utr;Parent=Msa0333130-mRNA-1
chr2_4 five_prime_UTR 50777417 50777867 50777417 ID=Msa0333130-mRNA-1:five_prime_utr;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50777065 50777416 50777065 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50776794 50776888 50776794 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50776114 50776208 50776114 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50775420 50775495 50775420 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50774819 50774958 50774819 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 CDS 50774668 50774731 50774668 ID=Msa0333130-mRNA-1:cds;Parent=Msa0333130-mRNA-1
chr2_4 three_prime_UTR 50774406 50774667 50774406 ID=Msa0333130-mRNA-1:three_prime_utr;Parent=Msa0333130-mRNA-1
Gene Sequence

>Msa0333130

ATGTGTTTATACCTGTATTTTTCTTTGTATGTATATGTGGAATGTATGGTTTCTTTGACCATTGAATTTTCTGAAATATATCATCAATTCACCATATATTTATATCTTTTGAAATGGCAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGATACCATATGATTCTTTCAGGGAACAGGGTGATTATAGAGTTGCTGATGGTTCTGATTCATCTGATATGAACACTAATTGTGATGCAATGAAAGAAACCGATTCAGCAAAGTTAGACTACGATTTTATGTGTTTTTTCCTTTCTAGCGACAGACTTGACCTCTACAAATCAATTGATTATCGGTGTGAAGATATGATATTAGGAGGGGATGGCCTTCTGTCTGAGGCTCAATGGCTTATTGATATCGGTCTTCAGCCAAACTCCAACTCTCCAACAAAAGCAATTGGTTACAGACAAGCCATGGATTACTTAATAGGATGCAGAGAACAAGGGGGTCAGAGTTCAGCTGGAGAATTTTACAGATTCTTGTCTGAATTTCAAAAAGCTTCAAGGAATTTCGCGAAACGACAGTTGACTTGGTTTCGTAATGAACATATTTACCATTGGCTTGACGCTTCTAAACCTGTGGAAACCGTTCTGAACTTCATTCATGATGCATACCACAATCAGAATGGAAATCTTTTTGTGCCCGAACACCTTAGAATGTCGAGAGATATTACTAATTCTCGAATAGCTGCTAAACTAAAGGCTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTATCCTATTTTGGAATGGATACAGAAGACTCAGAAGTGA
Protein sequence

>Msa0333130

MCLYLYFSLYVYVECMVSLTIEFSEIYHQFTIYLYLLKWQSSGSPPSAFRIPYDSFREQGDYRVADGSDSSDMNTNCDAMKETDSAKLDYDFMCFFLSSDRLDLYKSIDYRCEDMILGGDGLLSEAQWLIDIGLQPNSNSPTKAIGYRQAMDYLIGCREQGGQSSAGEFYRFLSEFQKASRNFAKRQLTWFRNEHIYHWLDASKPVETVLNFIHDAYHNQNGNLFVPEHLRMSRDITNSRIAAKLKAYRTRNRHFVNGEDCYPILEWIQKTQK*