AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645820 MtrunA17_Chr4g0033921 92.754 138 9 1 1 137 1 138 5.44e-88 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 128 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAGCAGGAAAAGAATT+TGG 0.180310 4_3:+51258417 Msa0645820:three_prime_UTR
AAATCACCGTTTAATTTAAA+AGG 0.181426 4_3:-51258725 None:intergenic
GATATTCATGGTCTTGTTCT+TGG 0.188953 4_3:+51257387 Msa0645820:three_prime_UTR
TTTCATTTCCTTTCATTTAC+TGG 0.208668 4_3:-51257601 None:intergenic
AAATACAGGAAGTGATAAAA+TGG 0.232913 4_3:-51257450 None:intergenic
TGCAAAGTATGAATCATAAA+AGG 0.239713 4_3:-51256684 None:intergenic
CCAATTTCAGCTGTTAATTC+AGG 0.240777 4_3:+51255741 Msa0645820:CDS
TCATAATTGGACTGCATATC+TGG 0.263482 4_3:-51257573 None:intergenic
AAGTAATTAAGTTAAAATTC+AGG 0.302060 4_3:-51257777 None:intergenic
CCTGAATTAACAGCTGAAAT+TGG 0.305151 4_3:-51255741 None:intergenic
TATTCTGACACGAAACTTAC+AGG 0.313787 4_3:+51258601 Msa0645820:three_prime_UTR
ATTCATTGCTAGATTGTGAT+AGG 0.318140 4_3:+51256737 Msa0645820:three_prime_UTR
AAGTGTTTCCTTGATATTCA+TGG 0.319966 4_3:+51257375 Msa0645820:three_prime_UTR
TTTAGTAACGTCACAAAATC+AGG 0.323017 4_3:-51258661 None:intergenic
CACTCCTAGTGTAATGGAAT+TGG 0.327298 4_3:-51255500 None:intergenic
AGTGCTCTTGATTTAGCATT+TGG 0.344427 4_3:-51255544 None:intergenic
ACTTTATAAGCTCCATTTGT+TGG 0.345161 4_3:+51257234 Msa0645820:three_prime_UTR
CGCACCTTTGATGATTTCCC+TGG 0.355249 4_3:-51257829 None:intergenic
ACTTGTTATTTGTCTCTTGT+TGG 0.372194 4_3:+51257679 Msa0645820:three_prime_UTR
CCTGGATTTCGCATGCAAAA+AGG 0.372253 4_3:+51256603 Msa0645820:CDS
TGCGATGTGTGAACTGCTCC+AGG 0.381191 4_3:+51257811 Msa0645820:three_prime_UTR
CATCTGCCCGGGACGGTACT+AGG 0.399530 4_3:+51256953 Msa0645820:three_prime_UTR
ACTTCCTTCTACAGATGCTT+GGG 0.399626 4_3:+51258176 Msa0645820:three_prime_UTR
ATGCTACTCGACGTGGAACT+TGG 0.407325 4_3:-51257002 None:intergenic
GCACTACTCGATGTGGTACT+TGG 0.410790 4_3:-51256781 None:intergenic
TTGAGGGGTCTAGCTATTAC+CGG 0.413466 4_3:+51258489 Msa0645820:three_prime_UTR
TCAAGCAACTCTTGAGGATA+AGG 0.416696 4_3:-51257137 None:intergenic
CTTCCCCAAGCATCTGTAGA+AGG 0.423340 4_3:-51258180 None:intergenic
GACAAATAACAAGTTTATAT+AGG 0.425105 4_3:-51257670 None:intergenic
ATCTGTAGAAGGAAGTCTTT+CGG 0.427957 4_3:-51258169 None:intergenic
AATAACAAGTTTATATAGGC+AGG 0.429176 4_3:-51257666 None:intergenic
GACTTCCTTCTACAGATGCT+TGG 0.439445 4_3:+51258175 Msa0645820:three_prime_UTR
TGTATCTTATTATCATCTCC+TGG 0.439751 4_3:-51255918 None:intergenic
GGGCATAAGCAGCCAACAAA+TGG 0.442697 4_3:-51257246 None:intergenic
AATTCTGAACTATGATGAAC+AGG 0.444259 4_3:-51257730 None:intergenic
TAAGAATGCTGAAATATCAT+TGG 0.446744 4_3:-51255871 None:intergenic
AGTAATTAAGTTAAAATTCA+GGG 0.450293 4_3:-51257776 None:intergenic
ATTATAATTGGTATTAGAGC+TGG 0.453380 4_3:+51256862 Msa0645820:three_prime_UTR
TAAGTGCAAAAGAGAAAGAA+AGG 0.461387 4_3:+51255411 Msa0645820:five_prime_UTR
CAAAACAAGTTATTCACCTT+CGG 0.464607 4_3:-51258469 None:intergenic
CTCTGTCTCCATGGAGAAGA+AGG 0.465388 4_3:+51255581 Msa0645820:CDS
CAAGCAACTCTTGAGGATAA+GGG 0.465509 4_3:-51257136 None:intergenic
TTTCTCTGTCTCTGTCTCCA+TGG 0.467641 4_3:+51255572 Msa0645820:CDS
AGCTTAAAGAGTTATTCTAA+TGG 0.471587 4_3:+51258544 Msa0645820:three_prime_UTR
TTTCTTGATCATCAAAGGCT+TGG 0.471688 4_3:+51257343 Msa0645820:three_prime_UTR
GTTTGGTACCTTCTTCTCCA+TGG 0.477856 4_3:-51255589 None:intergenic
GCAAAGTATGAATCATAAAA+GGG 0.483439 4_3:-51256683 None:intergenic
TGCATGCGAAATCCAGGCAC+TGG 0.488521 4_3:-51256597 None:intergenic
CGTACGGCCCCACCAGTGCC+TGG 0.488782 4_3:+51256585 Msa0645820:CDS
GGGATTTCTCTGTTAAACCT+TGG 0.491201 4_3:+51257497 Msa0645820:three_prime_UTR
GGCCTAAGTTTATAAGAATC+CGG 0.491763 4_3:-51256563 None:intergenic
AACTCTCACTCCTAGTGTAA+TGG 0.494044 4_3:-51255506 None:intergenic
CACTACTCGATGTGGTACTT+GGG 0.494146 4_3:-51256780 None:intergenic
GACAACTGAGAGTGAAGGAG+AGG 0.494274 4_3:-51257543 None:intergenic
GGTCAACTTGACGGAGTTTG+AGG 0.495963 4_3:-51257521 None:intergenic
CGAGATGCTTCGTGATAGCT+AGG 0.500753 4_3:+51256803 Msa0645820:three_prime_UTR
CATTGTAGAGTGCATCTGCC+CGG 0.501012 4_3:+51256941 Msa0645820:three_prime_UTR
CAGGCACTGGTGGGGCCGTA+CGG 0.501017 4_3:-51256584 None:intergenic
GACCGGATTCTTATAAACTT+AGG 0.501149 4_3:+51256561 Msa0645820:CDS
TCAAGAGTTGCTTGAGCACA+AGG 0.514629 4_3:+51257145 Msa0645820:three_prime_UTR
TGCGAAATCCAGGCACTGGT+GGG 0.515069 4_3:-51256593 None:intergenic
TGCAACAAATCGTGTTTCTC+CGG 0.516143 4_3:-51258508 None:intergenic
AATACAGGAAGTGATAAAAT+GGG 0.517337 4_3:-51257449 None:intergenic
TCCTTATCCTAGTACCGTCC+CGG 0.517426 4_3:-51256960 None:intergenic
GAAGGAGAGGGTCAACTTGA+CGG 0.518085 4_3:-51257530 None:intergenic
GAACAAGACCATGAATATCA+AGG 0.519966 4_3:-51257383 None:intergenic
CCCGGGACGGTACTAGGATA+AGG 0.522604 4_3:+51256959 Msa0645820:three_prime_UTR
AAAAGAGAAAGAAAGGGATA+AGG 0.524180 4_3:+51255418 Msa0645820:five_prime_UTR
AAACACAGAAGGTATTTGAC+CGG 0.527893 4_3:+51256544 Msa0645820:CDS
GCCACTGTAGTTGCAGAACC+AGG 0.531242 4_3:+51255900 Msa0645820:CDS
TTAGCTTGTGTTCTTTACAA+AGG 0.531367 4_3:+51257412 Msa0645820:three_prime_UTR
TATGCAATATATCACTCTGT+TGG 0.533513 4_3:-51258684 None:intergenic
TTCATTGCTAGATTGTGATA+GGG 0.534950 4_3:+51256738 Msa0645820:three_prime_UTR
TAGTGTAATGGAATTGGAGT+TGG 0.540616 4_3:-51255494 None:intergenic
GATAGTCTCTCTACTTCCAA+TGG 0.546713 4_3:+51255693 Msa0645820:CDS
TACCTACGAAGGGGCTGGAA+AGG 0.549638 4_3:+51256908 Msa0645820:three_prime_UTR
AGTGATAAAATGGGCATCCA+AGG 0.550154 4_3:-51257440 None:intergenic
ATTGTAGAGTGCATCTGCCC+GGG 0.552560 4_3:+51256942 Msa0645820:three_prime_UTR
TGAGAAAACCAGTAAATGAA+AGG 0.560093 4_3:+51257593 Msa0645820:three_prime_UTR
TCTTTACAAAGGAAAGACCT+TGG 0.562227 4_3:+51257423 Msa0645820:three_prime_UTR
CTTAGATGCAAAGGACAAGA+AGG 0.565021 4_3:+51258356 Msa0645820:three_prime_UTR
ATAGGGATTTGCGTATTATG+AGG 0.565045 4_3:+51256755 Msa0645820:three_prime_UTR
TATTAGAGCTGGTTATCTAG+TGG 0.565945 4_3:+51256873 Msa0645820:three_prime_UTR
AGGACTACCTACGAAGGGGC+TGG 0.566159 4_3:+51256903 Msa0645820:three_prime_UTR
CCAGGAAAACTTAGATGCAA+AGG 0.568120 4_3:+51258347 Msa0645820:intron
TCTTATAAACTTAGGCCGTA+CGG 0.572177 4_3:+51256569 Msa0645820:CDS
AGTTCCACGTCGAGTAGCAT+AGG 0.573084 4_3:+51257005 Msa0645820:three_prime_UTR
GTTTAAATGGCAGTTAAGAG+TGG 0.573603 4_3:+51256506 Msa0645820:intron
ATGTCTGAGAGTTGTTCCAT+TGG 0.575900 4_3:-51255709 None:intergenic
GTCGAGTAGCATAGGCTGAT+CGG 0.581835 4_3:+51257013 Msa0645820:three_prime_UTR
ACGGTACTAGGATAAGGACT+TGG 0.582201 4_3:+51256965 Msa0645820:three_prime_UTR
TTTAAAGATAGCTATCAAAG+AGG 0.588540 4_3:-51257062 None:intergenic
TAGTGTGTCTAGAATGTGGT+TGG 0.588740 4_3:-51257173 None:intergenic
AAGTGCAAAAGAGAAAGAAA+GGG 0.589842 4_3:+51255412 Msa0645820:five_prime_UTR
CAGTTAAGAGTGGACTTGAC+TGG 0.592282 4_3:+51256516 Msa0645820:intron
ATGCGAAATCCAGGCACTGG+TGG 0.601200 4_3:-51256594 None:intergenic
CCTTATCCTAGTACCGTCCC+GGG 0.604292 4_3:-51256959 None:intergenic
TGCTCCAGGGAAATCATCAA+AGG 0.608014 4_3:+51257825 Msa0645820:three_prime_UTR
ATAACAAGTTTATATAGGCA+GGG 0.608125 4_3:-51257665 None:intergenic
CGGTACTAGGATAAGGACTT+GGG 0.608813 4_3:+51256966 Msa0645820:three_prime_UTR
CGGAAAGGACTACCTACGAA+GGG 0.609396 4_3:+51256898 Msa0645820:three_prime_UTR
ACAACTGAGAGTGAAGGAGA+GGG 0.610173 4_3:-51257542 None:intergenic
CTTCCTTCTACAGATGCTTG+GGG 0.611133 4_3:+51258177 Msa0645820:three_prime_UTR
ATGAGTATCAATTGAAACAC+AGG 0.612907 4_3:+51255442 Msa0645820:five_prime_UTR
AATACATGATGCAAATGCGA+AGG 0.617704 4_3:-51257321 None:intergenic
GGAGCAGTTCACACATCGCA+AGG 0.618690 4_3:-51257808 None:intergenic
GGTTATCTAGTGGCTCGGAA+AGG 0.622321 4_3:+51256883 Msa0645820:three_prime_UTR
CGACGAAGGCATAAACATGA+AGG 0.625407 4_3:-51258759 None:intergenic
GAGCTGGTTATCTAGTGGCT+CGG 0.625704 4_3:+51256878 Msa0645820:three_prime_UTR
TTGACGGAGTTTGAGGACCA+AGG 0.628309 4_3:-51257514 None:intergenic
GACTGGTGTTCAAACACAGA+AGG 0.630186 4_3:+51256533 Msa0645820:CDS
ACAGAGACAACTGAGAGTGA+AGG 0.635799 4_3:-51257548 None:intergenic
AGCCTTTCCAGCCCCTTCGT+AGG 0.637549 4_3:-51256910 None:intergenic
AACTCCAATTCCATTACACT+AGG 0.641122 4_3:+51255496 Msa0645820:CDS
GCGAAATCCAGGCACTGGTG+GGG 0.648008 4_3:-51256592 None:intergenic
CAAATGATAATTACATCGAG+AGG 0.648262 4_3:+51257642 Msa0645820:three_prime_UTR
TCCTGGTTCTGCAACTACAG+TGG 0.653749 4_3:-51255901 None:intergenic
TAGAGTGCATCTGCCCGGGA+CGG 0.654179 4_3:+51256946 Msa0645820:three_prime_UTR
TTGTGCTCAAGCAACTCTTG+AGG 0.654734 4_3:-51257143 None:intergenic
AGAAATACTCAATTGTACCA+TGG 0.664939 4_3:+51258228 Msa0645820:three_prime_UTR
TCGGAAAGGACTACCTACGA+AGG 0.667413 4_3:+51256897 Msa0645820:three_prime_UTR
GCGATGTGTGAACTGCTCCA+GGG 0.669773 4_3:+51257812 Msa0645820:three_prime_UTR
AACAGAGAAATCCCACAAGG+TGG 0.675602 4_3:-51257488 None:intergenic
GCATCTCGCACTACTCGATG+TGG 0.687406 4_3:-51256788 None:intergenic
TCAGCCTATGCTACTCGACG+TGG 0.688891 4_3:-51257009 None:intergenic
GCAAATGCGAAGGTCACTTG+TGG 0.700215 4_3:-51257311 None:intergenic
GGAAAGGACTACCTACGAAG+GGG 0.701741 4_3:+51256899 Msa0645820:three_prime_UTR
TTTAACAGAGAAATCCCACA+AGG 0.759188 4_3:-51257491 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATAAAAAAAATAT+TGG - chr4_3:51257861-51257880 None:intergenic 0.0%
!! AAAAGATACATAATAAATAA+AGG - chr4_3:51255769-51255788 None:intergenic 10.0%
!!! AAAATATTTTACATGATAAA+AGG - chr4_3:51256389-51256408 None:intergenic 10.0%
!!! TTTTGATACTTAATTATAAT+TGG + chr4_3:51256850-51256869 Msa0645820:three_prime_UTR 10.0%
!!! TATTTATTATGTATCTTTTG+AGG + chr4_3:51255770-51255789 Msa0645820:intron 15.0%
!!! TAAAATATTTTTCTGAAGAA+TGG + chr4_3:51256398-51256417 Msa0645820:intron 15.0%
!! AGTAATTAAGTTAAAATTCA+GGG - chr4_3:51257779-51257798 None:intergenic 15.0%
!! AAGTAATTAAGTTAAAATTC+AGG - chr4_3:51257780-51257799 None:intergenic 15.0%
!! AAGAATGAATGAATAATTTA+TGG - chr4_3:51257920-51257939 None:intergenic 15.0%
!! ATATATATTATCATGATTCA+TGG - chr4_3:51258076-51258095 None:intergenic 15.0%
!! TTTAGATTGGAATCAATTTA+TGG - chr4_3:51255960-51255979 None:intergenic 20.0%
!!! TTTTGTTAAGAATCTTACAT+CGG + chr4_3:51256103-51256122 Msa0645820:intron 20.0%
!! TTTACTTTACAATTACAAGT+TGG + chr4_3:51256149-51256168 Msa0645820:intron 20.0%
!!! ATATTTTACATGATAAAAGG+AGG - chr4_3:51256386-51256405 None:intergenic 20.0%
!! GACAAATAACAAGTTTATAT+AGG - chr4_3:51257673-51257692 None:intergenic 20.0%
!!! TTTGAGCCTTTTAAATTAAA+CGG + chr4_3:51258719-51258738 Msa0645820:three_prime_UTR 20.0%
!!! AAATCACCGTTTAATTTAAA+AGG - chr4_3:51258728-51258747 None:intergenic 20.0%
! AATGAATAAGTGAAGTAGTT+TGG - chr4_3:51255609-51255628 None:intergenic 25.0%
! TAAGAATGCTGAAATATCAT+TGG - chr4_3:51255874-51255893 None:intergenic 25.0%
! CTTCAAACATAAACAAATTG+TGG + chr4_3:51256315-51256334 Msa0645820:intron 25.0%
! TTGTAATCTTGTGGTTTAAA+TGG + chr4_3:51256493-51256512 Msa0645820:intron 25.0%
! GCAAAGTATGAATCATAAAA+GGG - chr4_3:51256686-51256705 None:intergenic 25.0%
! TGCAAAGTATGAATCATAAA+AGG - chr4_3:51256687-51256706 None:intergenic 25.0%
! ATTATAATTGGTATTAGAGC+TGG + chr4_3:51256862-51256881 Msa0645820:three_prime_UTR 25.0%
! TTTAAAGATAGCTATCAAAG+AGG - chr4_3:51257065-51257084 None:intergenic 25.0%
!! TGTATTTTCTTGATCATCAA+AGG + chr4_3:51257338-51257357 Msa0645820:three_prime_UTR 25.0%
! AATACAGGAAGTGATAAAAT+GGG - chr4_3:51257452-51257471 None:intergenic 25.0%
! AAATACAGGAAGTGATAAAA+TGG - chr4_3:51257453-51257472 None:intergenic 25.0%
!! ATTTTATCACTTCCTGTATT+TGG + chr4_3:51257452-51257471 Msa0645820:three_prime_UTR 25.0%
!!! TTTTTTCACTAACCAAATAC+AGG - chr4_3:51257467-51257486 None:intergenic 25.0%
!!! TTTACTGGTTTTCTCATAAT+TGG - chr4_3:51257589-51257608 None:intergenic 25.0%
! TTTCATTTCCTTTCATTTAC+TGG - chr4_3:51257604-51257623 None:intergenic 25.0%
! ATAACAAGTTTATATAGGCA+GGG - chr4_3:51257668-51257687 None:intergenic 25.0%
! AATAACAAGTTTATATAGGC+AGG - chr4_3:51257669-51257688 None:intergenic 25.0%
! TGAGATAAAACTTAATCTCA+GGG - chr4_3:51257995-51258014 None:intergenic 25.0%
! TTGAGATAAAACTTAATCTC+AGG - chr4_3:51257996-51258015 None:intergenic 25.0%
! AGCTTAAAGAGTTATTCTAA+TGG + chr4_3:51258544-51258563 Msa0645820:three_prime_UTR 25.0%
! TGATGAGCTCATAAAAATAA+AGG + chr4_3:51258573-51258592 Msa0645820:three_prime_UTR 25.0%
TAAGTGCAAAAGAGAAAGAA+AGG + chr4_3:51255411-51255430 Msa0645820:five_prime_UTR 30.0%
AAGTGCAAAAGAGAAAGAAA+GGG + chr4_3:51255412-51255431 Msa0645820:five_prime_UTR 30.0%
AAAAGAGAAAGAAAGGGATA+AGG + chr4_3:51255418-51255437 Msa0645820:five_prime_UTR 30.0%
ATGAGTATCAATTGAAACAC+AGG + chr4_3:51255442-51255461 Msa0645820:five_prime_UTR 30.0%
TGTATCTTATTATCATCTCC+TGG - chr4_3:51255921-51255940 None:intergenic 30.0%
! AGAAACACACACTTTTAGAT+TGG - chr4_3:51255973-51255992 None:intergenic 30.0%
ATCAATCAACTTGATGAACT+AGG + chr4_3:51255995-51256014 Msa0645820:intron 30.0%
! AGTTTTCATGCCCAATTAAT+CGG + chr4_3:51256037-51256056 Msa0645820:intron 30.0%
GAAACAAATTAAATCCCACA+GGG - chr4_3:51256066-51256085 None:intergenic 30.0%
AGAAACAAATTAAATCCCAC+AGG - chr4_3:51256067-51256086 None:intergenic 30.0%
! TGTAAAGTAAACACGTTTTC+AGG - chr4_3:51256140-51256159 None:intergenic 30.0%
!!! ATTACAAGTTGGTTTTGTAG+AGG + chr4_3:51256160-51256179 Msa0645820:intron 30.0%
! TTGTTTATGTTTGAAGCTAC+AGG - chr4_3:51256311-51256330 None:intergenic 30.0%
! TTTTACATGATAAAAGGAGG+AGG - chr4_3:51256383-51256402 None:intergenic 30.0%
!! GGATTGATTTTGTAATCTTG+TGG + chr4_3:51256484-51256503 Msa0645820:intron 30.0%
ATTCATTGCTAGATTGTGAT+AGG + chr4_3:51256737-51256756 Msa0645820:three_prime_UTR 30.0%
TTCATTGCTAGATTGTGATA+GGG + chr4_3:51256738-51256757 Msa0645820:three_prime_UTR 30.0%
!!! TGATAGCTAGGTTTTAAAAG+AGG + chr4_3:51256815-51256834 Msa0645820:three_prime_UTR 30.0%
!!! GATAGCTAGGTTTTAAAAGA+GGG + chr4_3:51256816-51256835 Msa0645820:three_prime_UTR 30.0%
! AGGATAAGGGTTTTTAAATG+GGG - chr4_3:51257126-51257145 None:intergenic 30.0%
! GAGGATAAGGGTTTTTAAAT+GGG - chr4_3:51257127-51257146 None:intergenic 30.0%
! TGAGGATAAGGGTTTTTAAA+TGG - chr4_3:51257128-51257147 None:intergenic 30.0%
!! TTTTTAGTGTGTCTAGAATG+TGG - chr4_3:51257180-51257199 None:intergenic 30.0%
TTTCACAGAAAAATGGTCAT+CGG - chr4_3:51257203-51257222 None:intergenic 30.0%
! GCTCTTATTTCACAGAAAAA+TGG - chr4_3:51257210-51257229 None:intergenic 30.0%
ACTTTATAAGCTCCATTTGT+TGG + chr4_3:51257234-51257253 Msa0645820:three_prime_UTR 30.0%
CCAAAAAATTGAAAAGTTGC+AGG - chr4_3:51257291-51257310 None:intergenic 30.0%
! CCTGCAACTTTTCAATTTTT+TGG + chr4_3:51257288-51257307 Msa0645820:three_prime_UTR 30.0%
AAGTGTTTCCTTGATATTCA+TGG + chr4_3:51257375-51257394 Msa0645820:three_prime_UTR 30.0%
!! TTAGCTTGTGTTCTTTACAA+AGG + chr4_3:51257412-51257431 Msa0645820:three_prime_UTR 30.0%
TGAGAAAACCAGTAAATGAA+AGG + chr4_3:51257593-51257612 Msa0645820:three_prime_UTR 30.0%
CAAATGATAATTACATCGAG+AGG + chr4_3:51257642-51257661 Msa0645820:three_prime_UTR 30.0%
!! ACTTGTTATTTGTCTCTTGT+TGG + chr4_3:51257679-51257698 Msa0645820:three_prime_UTR 30.0%
AATTCTGAACTATGATGAAC+AGG - chr4_3:51257733-51257752 None:intergenic 30.0%
AGAAATACTCAATTGTACCA+TGG + chr4_3:51258228-51258247 Msa0645820:three_prime_UTR 30.0%
!!! CTTTTTTGTATAATCAGCCA+TGG - chr4_3:51258248-51258267 None:intergenic 30.0%
CATGGCTGATTATACAAAAA+AGG + chr4_3:51258246-51258265 Msa0645820:three_prime_UTR 30.0%
CAAAACAAGTTATTCACCTT+CGG - chr4_3:51258472-51258491 None:intergenic 30.0%
!!! AAGGTGAATAACTTGTTTTG+AGG + chr4_3:51258472-51258491 Msa0645820:three_prime_UTR 30.0%
!!! AGGTGAATAACTTGTTTTGA+GGG + chr4_3:51258473-51258492 Msa0645820:three_prime_UTR 30.0%
TTTAGTAACGTCACAAAATC+AGG - chr4_3:51258664-51258683 None:intergenic 30.0%
TATGCAATATATCACTCTGT+TGG - chr4_3:51258687-51258706 None:intergenic 30.0%
! TAGTGTAATGGAATTGGAGT+TGG - chr4_3:51255497-51255516 None:intergenic 35.0%
AACTCCAATTCCATTACACT+AGG + chr4_3:51255496-51255515 Msa0645820:CDS 35.0%
AGTGCTCTTGATTTAGCATT+TGG - chr4_3:51255547-51255566 None:intergenic 35.0%
TTCTCAAACTACATCAAGCA+AGG - chr4_3:51255640-51255659 None:intergenic 35.0%
CCTGAATTAACAGCTGAAAT+TGG - chr4_3:51255744-51255763 None:intergenic 35.0%
CCAATTTCAGCTGTTAATTC+AGG + chr4_3:51255741-51255760 Msa0645820:CDS 35.0%
! ACTAGTTCTTCTTGCTTTGT+AGG + chr4_3:51255825-51255844 Msa0645820:intron 35.0%
TGGAATCAATTTATGGTGCA+TGG - chr4_3:51255953-51255972 None:intergenic 35.0%
AACAAAAGTTCTCACAACGT+GGG - chr4_3:51256201-51256220 None:intergenic 35.0%
AAACAAAAGTTCTCACAACG+TGG - chr4_3:51256202-51256221 None:intergenic 35.0%
AGGCTAAAGGGAAAATAACA+AGG - chr4_3:51256363-51256382 None:intergenic 35.0%
GTTTAAATGGCAGTTAAGAG+TGG + chr4_3:51256506-51256525 Msa0645820:intron 35.0%
!! AAACACAGAAGGTATTTGAC+CGG + chr4_3:51256544-51256563 Msa0645820:CDS 35.0%
GACCGGATTCTTATAAACTT+AGG + chr4_3:51256561-51256580 Msa0645820:CDS 35.0%
GGCCTAAGTTTATAAGAATC+CGG - chr4_3:51256566-51256585 None:intergenic 35.0%
TCTTATAAACTTAGGCCGTA+CGG + chr4_3:51256569-51256588 Msa0645820:CDS 35.0%
ATAGGGATTTGCGTATTATG+AGG + chr4_3:51256755-51256774 Msa0645820:three_prime_UTR 35.0%
TATTAGAGCTGGTTATCTAG+TGG + chr4_3:51256873-51256892 Msa0645820:three_prime_UTR 35.0%
!! GCATTGATGTTTTGTAACGA+GGG - chr4_3:51257269-51257288 None:intergenic 35.0%
AATACATGATGCAAATGCGA+AGG - chr4_3:51257324-51257343 None:intergenic 35.0%
TTTCTTGATCATCAAAGGCT+TGG + chr4_3:51257343-51257362 Msa0645820:three_prime_UTR 35.0%
GAACAAGACCATGAATATCA+AGG - chr4_3:51257386-51257405 None:intergenic 35.0%
!! GATATTCATGGTCTTGTTCT+TGG + chr4_3:51257387-51257406 Msa0645820:three_prime_UTR 35.0%
TCTTTACAAAGGAAAGACCT+TGG + chr4_3:51257423-51257442 Msa0645820:three_prime_UTR 35.0%
TAGTGAAAAAATCCACCTTG+TGG + chr4_3:51257476-51257495 Msa0645820:three_prime_UTR 35.0%
AGTGAAAAAATCCACCTTGT+GGG + chr4_3:51257477-51257496 Msa0645820:three_prime_UTR 35.0%
TTTAACAGAGAAATCCCACA+AGG - chr4_3:51257494-51257513 None:intergenic 35.0%
TCATAATTGGACTGCATATC+TGG - chr4_3:51257576-51257595 None:intergenic 35.0%
! TCGTTGAAGTTGACTTTGTT+AGG + chr4_3:51258131-51258150 Msa0645820:intron 35.0%
ATCTGTAGAAGGAAGTCTTT+CGG - chr4_3:51258172-51258191 None:intergenic 35.0%
! ATCTAAGTTTTCCTGGAATC+GGG - chr4_3:51258343-51258362 None:intergenic 35.0%
! CATCTAAGTTTTCCTGGAAT+CGG - chr4_3:51258344-51258363 None:intergenic 35.0%
CTCAAAAAATCATTCACAGC+AGG + chr4_3:51258405-51258424 Msa0645820:three_prime_UTR 35.0%
TTCACAGCAGGAAAAGAATT+TGG + chr4_3:51258417-51258436 Msa0645820:three_prime_UTR 35.0%
! TATTCACCTTCGGAGTTTTT+AGG - chr4_3:51258462-51258481 None:intergenic 35.0%
!!! GGTGAATAACTTGTTTTGAG+GGG + chr4_3:51258474-51258493 Msa0645820:three_prime_UTR 35.0%
TATTCTGACACGAAACTTAC+AGG + chr4_3:51258601-51258620 Msa0645820:three_prime_UTR 35.0%
! CACTCCTAGTGTAATGGAAT+TGG - chr4_3:51255503-51255522 None:intergenic 40.0%
AACTCTCACTCCTAGTGTAA+TGG - chr4_3:51255509-51255528 None:intergenic 40.0%
GATAGTCTCTCTACTTCCAA+TGG + chr4_3:51255693-51255712 Msa0645820:CDS 40.0%
ATGTCTGAGAGTTGTTCCAT+TGG - chr4_3:51255712-51255731 None:intergenic 40.0%
GATAAAAGGAGGAGGCTAAA+GGG - chr4_3:51256375-51256394 None:intergenic 40.0%
TGATAAAAGGAGGAGGCTAA+AGG - chr4_3:51256376-51256395 None:intergenic 40.0%
! TTTCTTGAACCCTGCTGTTT+AGG + chr4_3:51256461-51256480 Msa0645820:intron 40.0%
! TTCTTGAACCCTGCTGTTTA+GGG + chr4_3:51256462-51256481 Msa0645820:intron 40.0%
AATCAATCCCCTAAACAGCA+GGG - chr4_3:51256473-51256492 None:intergenic 40.0%
AAATCAATCCCCTAAACAGC+AGG - chr4_3:51256474-51256493 None:intergenic 40.0%
CAAGCAACTCTTGAGGATAA+GGG - chr4_3:51257139-51257158 None:intergenic 40.0%
TCAAGCAACTCTTGAGGATA+AGG - chr4_3:51257140-51257159 None:intergenic 40.0%
! TAGTGTGTCTAGAATGTGGT+TGG - chr4_3:51257176-51257195 None:intergenic 40.0%
!!! GGCATTGATGTTTTGTAACG+AGG - chr4_3:51257270-51257289 None:intergenic 40.0%
AGTGATAAAATGGGCATCCA+AGG - chr4_3:51257443-51257462 None:intergenic 40.0%
GGGATTTCTCTGTTAAACCT+TGG + chr4_3:51257497-51257516 Msa0645820:three_prime_UTR 40.0%
ACTTCCTTCTACAGATGCTT+GGG + chr4_3:51258176-51258195 Msa0645820:three_prime_UTR 40.0%
! CGATTTTTCTCCTCTGTATG+TGG + chr4_3:51258273-51258292 Msa0645820:intron 40.0%
! ACATTTGATTTCCCGATTCC+AGG + chr4_3:51258329-51258348 Msa0645820:intron 40.0%
! CCTTTGCATCTAAGTTTTCC+TGG - chr4_3:51258350-51258369 None:intergenic 40.0%
CCAGGAAAACTTAGATGCAA+AGG + chr4_3:51258347-51258366 Msa0645820:intron 40.0%
CTTAGATGCAAAGGACAAGA+AGG + chr4_3:51258356-51258375 Msa0645820:three_prime_UTR 40.0%
ATTGAGCCTAAAAACTCCGA+AGG + chr4_3:51258453-51258472 Msa0645820:three_prime_UTR 40.0%
TGCAACAAATCGTGTTTCTC+CGG - chr4_3:51258511-51258530 None:intergenic 40.0%
TTTCTCTGTCTCTGTCTCCA+TGG + chr4_3:51255572-51255591 Msa0645820:CDS 45.0%
GTTTGGTACCTTCTTCTCCA+TGG - chr4_3:51255592-51255611 None:intergenic 45.0%
CACAGGGAAGCCGATTAATT+GGG - chr4_3:51256050-51256069 None:intergenic 45.0%
! CAATTAATCGGCTTCCCTGT+GGG + chr4_3:51256049-51256068 Msa0645820:intron 45.0%
!! GGTTTTGTAGAGGTTGCGTT+AGG + chr4_3:51256170-51256189 Msa0645820:intron 45.0%
AAGTTCTCACAACGTGGGTT+GGG - chr4_3:51256196-51256215 None:intergenic 45.0%
AAAGTTCTCACAACGTGGGT+TGG - chr4_3:51256197-51256216 None:intergenic 45.0%
TGTTATCCTGACTTTGCCAC+TGG + chr4_3:51256273-51256292 Msa0645820:intron 45.0%
! GTTTGAAGCTACAGGTTGCA+TGG - chr4_3:51256303-51256322 None:intergenic 45.0%
! TCTTGAACCCTGCTGTTTAG+GGG + chr4_3:51256463-51256482 Msa0645820:intron 45.0%
! CAGTTAAGAGTGGACTTGAC+TGG + chr4_3:51256516-51256535 Msa0645820:intron 45.0%
GACTGGTGTTCAAACACAGA+AGG + chr4_3:51256533-51256552 Msa0645820:CDS 45.0%
! CCTTTTTGCATGCGAAATCC+AGG - chr4_3:51256606-51256625 None:intergenic 45.0%
CCTGGATTTCGCATGCAAAA+AGG + chr4_3:51256603-51256622 Msa0645820:CDS 45.0%
GGATTTCGCATGCAAAAAGG+AGG + chr4_3:51256606-51256625 Msa0645820:CDS 45.0%
CACTACTCGATGTGGTACTT+GGG - chr4_3:51256783-51256802 None:intergenic 45.0%
ACGGTACTAGGATAAGGACT+TGG + chr4_3:51256965-51256984 Msa0645820:three_prime_UTR 45.0%
CGGTACTAGGATAAGGACTT+GGG + chr4_3:51256966-51256985 Msa0645820:three_prime_UTR 45.0%
! AAGGGTTTTTAAATGGGGCG+AGG - chr4_3:51257121-51257140 None:intergenic 45.0%
TTGTGCTCAAGCAACTCTTG+AGG - chr4_3:51257146-51257165 None:intergenic 45.0%
TCAAGAGTTGCTTGAGCACA+AGG + chr4_3:51257145-51257164 Msa0645820:three_prime_UTR 45.0%
AACAGAGAAATCCCACAAGG+TGG - chr4_3:51257491-51257510 None:intergenic 45.0%
ACAACTGAGAGTGAAGGAGA+GGG - chr4_3:51257545-51257564 None:intergenic 45.0%
ACAGAGACAACTGAGAGTGA+AGG - chr4_3:51257551-51257570 None:intergenic 45.0%
TGCTCCAGGGAAATCATCAA+AGG + chr4_3:51257825-51257844 Msa0645820:three_prime_UTR 45.0%
GACTTCCTTCTACAGATGCT+TGG + chr4_3:51258175-51258194 Msa0645820:three_prime_UTR 45.0%
CTTCCTTCTACAGATGCTTG+GGG + chr4_3:51258177-51258196 Msa0645820:three_prime_UTR 45.0%
TTGAGGGGTCTAGCTATTAC+CGG + chr4_3:51258489-51258508 Msa0645820:three_prime_UTR 45.0%
CTCTGTCTCCATGGAGAAGA+AGG + chr4_3:51255581-51255600 Msa0645820:CDS 50.0%
!! TCCTGGTTCTGCAACTACAG+TGG - chr4_3:51255904-51255923 None:intergenic 50.0%
CCACAGGGAAGCCGATTAAT+TGG - chr4_3:51256051-51256070 None:intergenic 50.0%
! CCAATTAATCGGCTTCCCTG+TGG + chr4_3:51256048-51256067 Msa0645820:intron 50.0%
GGTATACCAGTGGCAAAGTC+AGG - chr4_3:51256282-51256301 None:intergenic 50.0%
CAGGTTGCATGGTATACCAG+TGG - chr4_3:51256292-51256311 None:intergenic 50.0%
GCACTACTCGATGTGGTACT+TGG - chr4_3:51256784-51256803 None:intergenic 50.0%
CGAGATGCTTCGTGATAGCT+AGG + chr4_3:51256803-51256822 Msa0645820:three_prime_UTR 50.0%
GAGCTGGTTATCTAGTGGCT+CGG + chr4_3:51256878-51256897 Msa0645820:three_prime_UTR 50.0%
! GGTTATCTAGTGGCTCGGAA+AGG + chr4_3:51256883-51256902 Msa0645820:three_prime_UTR 50.0%
TCGGAAAGGACTACCTACGA+AGG + chr4_3:51256897-51256916 Msa0645820:three_prime_UTR 50.0%
CGGAAAGGACTACCTACGAA+GGG + chr4_3:51256898-51256917 Msa0645820:three_prime_UTR 50.0%
GGAAAGGACTACCTACGAAG+GGG + chr4_3:51256899-51256918 Msa0645820:three_prime_UTR 50.0%
CATTGTAGAGTGCATCTGCC+CGG + chr4_3:51256941-51256960 Msa0645820:three_prime_UTR 50.0%
ATTGTAGAGTGCATCTGCCC+GGG + chr4_3:51256942-51256961 Msa0645820:three_prime_UTR 50.0%
TCCTTATCCTAGTACCGTCC+CGG - chr4_3:51256963-51256982 None:intergenic 50.0%
ATGCTACTCGACGTGGAACT+TGG - chr4_3:51257005-51257024 None:intergenic 50.0%
AGTTCCACGTCGAGTAGCAT+AGG + chr4_3:51257005-51257024 Msa0645820:three_prime_UTR 50.0%
GTCGAGTAGCATAGGCTGAT+CGG + chr4_3:51257013-51257032 Msa0645820:three_prime_UTR 50.0%
GGGCATAAGCAGCCAACAAA+TGG - chr4_3:51257249-51257268 None:intergenic 50.0%
GCAAATGCGAAGGTCACTTG+TGG - chr4_3:51257314-51257333 None:intergenic 50.0%
TTGACGGAGTTTGAGGACCA+AGG - chr4_3:51257517-51257536 None:intergenic 50.0%
GGTCAACTTGACGGAGTTTG+AGG - chr4_3:51257524-51257543 None:intergenic 50.0%
GAAGGAGAGGGTCAACTTGA+CGG - chr4_3:51257533-51257552 None:intergenic 50.0%
GACAACTGAGAGTGAAGGAG+AGG - chr4_3:51257546-51257565 None:intergenic 50.0%
! CGCACCTTTGATGATTTCCC+TGG - chr4_3:51257832-51257851 None:intergenic 50.0%
CTTCCCCAAGCATCTGTAGA+AGG - chr4_3:51258183-51258202 None:intergenic 50.0%
TCCTCTGTATGTGGCTGTCA+TGG + chr4_3:51258282-51258301 Msa0645820:intron 50.0%
TCCATGACAGCCACATACAG+AGG - chr4_3:51258286-51258305 None:intergenic 50.0%
GCCACTGTAGTTGCAGAACC+AGG + chr4_3:51255900-51255919 Msa0645820:CDS 55.0%
!! TGCGAAATCCAGGCACTGGT+GGG - chr4_3:51256596-51256615 None:intergenic 55.0%
!! ATGCGAAATCCAGGCACTGG+TGG - chr4_3:51256597-51256616 None:intergenic 55.0%
TGCATGCGAAATCCAGGCAC+TGG - chr4_3:51256600-51256619 None:intergenic 55.0%
GCATCTCGCACTACTCGATG+TGG - chr4_3:51256791-51256810 None:intergenic 55.0%
TACCTACGAAGGGGCTGGAA+AGG + chr4_3:51256908-51256927 Msa0645820:three_prime_UTR 55.0%
CCTTATCCTAGTACCGTCCC+GGG - chr4_3:51256962-51256981 None:intergenic 55.0%
TCAGCCTATGCTACTCGACG+TGG - chr4_3:51257012-51257031 None:intergenic 55.0%
GGAGCAGTTCACACATCGCA+AGG - chr4_3:51257811-51257830 None:intergenic 55.0%
TGCGATGTGTGAACTGCTCC+AGG + chr4_3:51257811-51257830 Msa0645820:three_prime_UTR 55.0%
GCGATGTGTGAACTGCTCCA+GGG + chr4_3:51257812-51257831 Msa0645820:three_prime_UTR 55.0%
!! GCGAAATCCAGGCACTGGTG+GGG - chr4_3:51256595-51256614 None:intergenic 60.0%
AGGACTACCTACGAAGGGGC+TGG + chr4_3:51256903-51256922 Msa0645820:three_prime_UTR 60.0%
AGCCTTTCCAGCCCCTTCGT+AGG - chr4_3:51256913-51256932 None:intergenic 60.0%
TAGAGTGCATCTGCCCGGGA+CGG + chr4_3:51256946-51256965 Msa0645820:three_prime_UTR 60.0%
CCCGGGACGGTACTAGGATA+AGG + chr4_3:51256959-51256978 Msa0645820:three_prime_UTR 60.0%
CATCTGCCCGGGACGGTACT+AGG + chr4_3:51256953-51256972 Msa0645820:three_prime_UTR 65.0%
!! CAGGCACTGGTGGGGCCGTA+CGG - chr4_3:51256587-51256606 None:intergenic 70.0%
CGTACGGCCCCACCAGTGCC+TGG + chr4_3:51256585-51256604 Msa0645820:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51255408 51258770 51255408 ID=Msa0645820;Name=Msa0645820
chr4_3 mRNA 51255408 51258770 51255408 ID=Msa0645820-mRNA-1;Parent=Msa0645820;Name=Msa0645820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=67|1|1|1|0.8|0.83|6|1721|141
chr4_3 exon 51255408 51255602 51255408 ID=Msa0645820-mRNA-1:exon:12362;Parent=Msa0645820-mRNA-1
chr4_3 exon 51255689 51255762 51255689 ID=Msa0645820-mRNA-1:exon:12363;Parent=Msa0645820-mRNA-1
chr4_3 exon 51255847 51255941 51255847 ID=Msa0645820-mRNA-1:exon:12364;Parent=Msa0645820-mRNA-1
chr4_3 exon 51256519 51257846 51256519 ID=Msa0645820-mRNA-1:exon:12365;Parent=Msa0645820-mRNA-1
chr4_3 exon 51258166 51258267 51258166 ID=Msa0645820-mRNA-1:exon:12366;Parent=Msa0645820-mRNA-1
chr4_3 exon 51258351 51258770 51258351 ID=Msa0645820-mRNA-1:exon:12367;Parent=Msa0645820-mRNA-1
chr4_3 five_prime_UTR 51255408 51255474 51255408 ID=Msa0645820-mRNA-1:five_prime_utr;Parent=Msa0645820-mRNA-1
chr4_3 CDS 51255475 51255602 51255475 ID=Msa0645820-mRNA-1:cds;Parent=Msa0645820-mRNA-1
chr4_3 CDS 51255689 51255762 51255689 ID=Msa0645820-mRNA-1:cds;Parent=Msa0645820-mRNA-1
chr4_3 CDS 51255847 51255941 51255847 ID=Msa0645820-mRNA-1:cds;Parent=Msa0645820-mRNA-1
chr4_3 CDS 51256519 51256647 51256519 ID=Msa0645820-mRNA-1:cds;Parent=Msa0645820-mRNA-1
chr4_3 three_prime_UTR 51256648 51257846 51256648 ID=Msa0645820-mRNA-1:three_prime_utr;Parent=Msa0645820-mRNA-1
chr4_3 three_prime_UTR 51258166 51258267 51258166 ID=Msa0645820-mRNA-1:three_prime_utr;Parent=Msa0645820-mRNA-1
chr4_3 three_prime_UTR 51258351 51258770 51258351 ID=Msa0645820-mRNA-1:three_prime_utr;Parent=Msa0645820-mRNA-1
Gene Sequence

>Msa0645820

ATGTCGATGATTGCTGTCTCCAACTCCAATTCCATTACACTAGGAGTGAGAGTTGCTTCATTCACAACTCCAAATGCTAAATCAAGAGCACTCACTTTTTCTCTGTCTCTGTCTCCATGGAGAAGAAGCTTAGATAGTCTCTCTACTTCCAATGGAACAACTCTCAGACATCTTAATACTCCAATTTCAGCTGTTAATTCAGGTTTAGAAGCATCAATTACAGATTCCAATGATATTTCAGCATTCTTAACAGATGCCACTGTAGTTGCAGAACCAGGAGATGATAATAAGATACAATTAAGAGTGGACTTGACTGGTGTTCAAACACAGAAGGTATTTGACCGGATTCTTATAAACTTAGGCCGTACGGCCCCACCAGTGCCTGGATTTCGCATGCAAAAAGGAGGTAAAAAGTTTCTTTATTAA

Protein sequence

>Msa0645820

MSMIAVSNSNSITLGVRVASFTTPNAKSRALTFSLSLSPWRRSLDSLSTSNGTTLRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNKIQLRVDLTGVQTQKVFDRILINLGRTAPPVPGFRMQKGGKKFLY*