Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334290 | GAU44414.1 | 91.566 | 415 | 31 | 1 | 1 | 415 | 1 | 411 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334290 | sp|F4IEM5|GCR2_ARATH | 67.952 | 415 | 128 | 1 | 1 | 415 | 1 | 410 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216380 | Msa0334290 | 0.886141 | 4.426124e-72 | -8.615850e-47 |
| Msa0334290 | Msa0504020 | 0.816670 | 4.905136e-52 | -8.615850e-47 |
| Msa0334290 | Msa0743720 | 0.830581 | 2.709959e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334290 | MtrunA17_Chr2g0317911 | 85.372 | 417 | 23 | 2 | 1 | 415 | 1 | 381 | 0.0 | 723 |
| Msa0334290 | MtrunA17_Chr4g0021701 | 65.707 | 417 | 141 | 2 | 1 | 415 | 25 | 441 | 0.0 | 589 |
| Msa0334290 | MtrunA17_Chr3g0123781 | 49.231 | 390 | 177 | 7 | 41 | 415 | 32 | 415 | 1.36e-118 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334290 | AT1G52920.1 | 67.952 | 415 | 128 | 1 | 1 | 415 | 1 | 410 | 0.0 | 590 |
| Msa0334290 | AT2G20770.1 | 63.462 | 416 | 140 | 3 | 1 | 415 | 1 | 405 | 0.0 | 551 |
| Msa0334290 | AT5G65280.1 | 45.340 | 397 | 190 | 8 | 41 | 415 | 42 | 433 | 4.66e-113 | 338 |
| Msa0334290 | AT5G65280.2 | 47.573 | 309 | 147 | 5 | 121 | 415 | 4 | 311 | 6.95e-97 | 292 |
Find 124 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAGATCATCCACATTCT+TGG | 0.288609 | 2_4:+52579793 | None:intergenic |
| ATACCTCTTTGAATTGTCTA+AGG | 0.293167 | 2_4:+52578882 | None:intergenic |
| AGACCTTCGAATAAGGAATA+AGG | 0.296203 | 2_4:+52577737 | None:intergenic |
| CATCCACATTCTTGGTTACT+TGG | 0.297066 | 2_4:+52579801 | None:intergenic |
| ATGGCAGAACAGGTTACTTA+TGG | 0.303883 | 2_4:-52578716 | Msa0334290:CDS |
| TCCTCCAAGACCTTCGAATA+AGG | 0.318685 | 2_4:+52577730 | None:intergenic |
| GGTGCTGCTCATGGACTTGC+AGG | 0.320322 | 2_4:-52578437 | Msa0334290:CDS |
| CTCCTCCATGCATCTTTCCT+TGG | 0.350097 | 2_4:+52577765 | None:intergenic |
| CGTGCCGGTGTTTGTGCTCT+TGG | 0.351585 | 2_4:-52578953 | Msa0334290:CDS |
| TTGACATCTTCCACCTCATC+TGG | 0.364253 | 2_4:+52578380 | None:intergenic |
| TCAAAACCACGCAATATATC+AGG | 0.370925 | 2_4:-52577588 | Msa0334290:three_prime_UTR |
| TATTCCTTATTCGAAGGTCT+TGG | 0.377583 | 2_4:-52577734 | Msa0334290:CDS |
| CATTGGTGTCACGGTGCTCC+TGG | 0.378975 | 2_4:-52578272 | Msa0334290:CDS |
| AATGGCATGGGAAGAAATAC+TGG | 0.383288 | 2_4:-52578460 | Msa0334290:CDS |
| GAGTTATTGTATGGCAGAAC+AGG | 0.390773 | 2_4:-52578726 | Msa0334290:CDS |
| CCACAAGTGGCTAGGTTCCC+TGG | 0.391353 | 2_4:-52577677 | Msa0334290:CDS |
| GGTTCTTGGAACGGCATACT+TGG | 0.395964 | 2_4:-52579837 | Msa0334290:CDS |
| TGTTCTTCAAGTGTTGTCTC+TGG | 0.397728 | 2_4:+52580428 | None:intergenic |
| AGCACTTCACTTCAAACAAT+TGG | 0.406303 | 2_4:-52580306 | Msa0334290:intron |
| CAGGAGAAGTAGTGTGGAAG+AGG | 0.407282 | 2_4:-52577940 | Msa0334290:CDS |
| GTTATAACTTCATCCACAAT+TGG | 0.424250 | 2_4:+52578530 | None:intergenic |
| GTCAGATTCACTTCCTTCAC+TGG | 0.425272 | 2_4:+52578304 | None:intergenic |
| CTTTCTCTGTACAGATTGAC+AGG | 0.431846 | 2_4:-52577860 | Msa0334290:CDS |
| TGGCAGAACAGGTTACTTAT+GGG | 0.432303 | 2_4:-52578715 | Msa0334290:CDS |
| TCATTCTTAAACAAGCATAT+CGG | 0.434369 | 2_4:-52578687 | Msa0334290:CDS |
| TATACCTTTCTAGACATGAT+TGG | 0.445743 | 2_4:-52577701 | Msa0334290:CDS |
| CAAAATTTATTACATCTCCT+TGG | 0.456306 | 2_4:+52577562 | None:intergenic |
| ATTCTGCTTCAGCAAATTCA+AGG | 0.460631 | 2_4:-52579742 | Msa0334290:intron |
| GACCTTCGAATAAGGAATAA+GGG | 0.464630 | 2_4:+52577738 | None:intergenic |
| TCTGCCATACAATAACTCAT+AGG | 0.466009 | 2_4:+52578731 | None:intergenic |
| GTGTTTGGTAAGGTAGAGAA+AGG | 0.471162 | 2_4:+52580351 | None:intergenic |
| TCCTTATTCGAAGGTCTTGG+AGG | 0.474374 | 2_4:-52577731 | Msa0334290:CDS |
| AAATACTGGGGTGCTGCTCA+TGG | 0.483810 | 2_4:-52578446 | Msa0334290:CDS |
| CGCCCTTATTCCTTATTCGA+AGG | 0.485112 | 2_4:-52577740 | Msa0334290:CDS |
| TTTATGCTTGAAGATTGTTA+AGG | 0.488334 | 2_4:-52579771 | Msa0334290:CDS |
| GAGGTGAGAGAGTGTGGTGT+TGG | 0.490011 | 2_4:+52580377 | None:intergenic |
| ATGCCTTACCGTGTAGGTAG+TGG | 0.491158 | 2_4:+52578650 | None:intergenic |
| AGGGGTCTTCTTAAGCGAGT+TGG | 0.504459 | 2_4:-52577920 | Msa0334290:CDS |
| GAGTACTTGTACAGGGCTAA+AGG | 0.505457 | 2_4:-52577830 | Msa0334290:CDS |
| TCGCAAGCAGCGGAAGATGC+AGG | 0.507394 | 2_4:-52577959 | Msa0334290:CDS |
| AGTGTTGTCTCTGGCATGAA+TGG | 0.507407 | 2_4:+52580437 | None:intergenic |
| TTGCCCTATGAGTTATTGTA+TGG | 0.507703 | 2_4:-52578735 | Msa0334290:CDS |
| AGGAGTGAGGTGAGAGAGTG+TGG | 0.508542 | 2_4:+52580371 | None:intergenic |
| GTGACTCAAAGTTCATAGCC+AGG | 0.511069 | 2_4:+52577659 | None:intergenic |
| TTTGAGGTGAGTGTTTGGTA+AGG | 0.514421 | 2_4:+52580341 | None:intergenic |
| CAAGAGCACAAACACCGGCA+CGG | 0.514774 | 2_4:+52578954 | None:intergenic |
| GAAACAAGGAGTACTTGTAC+AGG | 0.518932 | 2_4:-52577838 | Msa0334290:CDS |
| ACGTTCATCTGTGGCCGTGC+CGG | 0.520688 | 2_4:-52578968 | Msa0334290:CDS |
| CGTCTTGTGCATTGGTGTCA+CGG | 0.521333 | 2_4:-52578281 | Msa0334290:CDS |
| TGGACCAATCATGTCTAGAA+AGG | 0.522222 | 2_4:+52577697 | None:intergenic |
| ATGAATGGTGGCAAGTTGTT+CGG | 0.523714 | 2_4:+52580452 | None:intergenic |
| GTGGATGAAGTTATAACAGC+TGG | 0.524603 | 2_4:-52578524 | Msa0334290:CDS |
| TGGTGTTGGTGTTTGAGAAG+AGG | 0.528091 | 2_4:+52580391 | None:intergenic |
| CTGCCATACAATAACTCATA+GGG | 0.530788 | 2_4:+52578732 | None:intergenic |
| ATTCGAAGGTCTTGGAGGAA+TGG | 0.532742 | 2_4:-52577726 | Msa0334290:CDS |
| GGAATTTGCCACGGCATCAG+TGG | 0.534765 | 2_4:-52577899 | Msa0334290:CDS |
| GGCAATTATCCCTCCAGTGA+AGG | 0.536493 | 2_4:-52578317 | Msa0334290:CDS |
| GATGTCCTTTGATGTATGAA+TGG | 0.539425 | 2_4:-52578478 | Msa0334290:CDS |
| AGCACCAAGAGCACAAACAC+CGG | 0.540687 | 2_4:+52578949 | None:intergenic |
| AGATGAGGTGGAAGATGTCA+AGG | 0.556890 | 2_4:-52578378 | Msa0334290:CDS |
| AGTGAGACATGGGGTTCTAG+TGG | 0.556968 | 2_4:-52579893 | Msa0334290:CDS |
| ATACATTTGTAATATACATA+CGG | 0.563477 | 2_4:+52577621 | None:intergenic |
| TTAAGGTGGTGAGTGAGACA+TGG | 0.563607 | 2_4:-52579904 | Msa0334290:intron |
| TAAGGTGGTGAGTGAGACAT+GGG | 0.563863 | 2_4:-52579903 | Msa0334290:intron |
| GCGCAAGAATTGATCGGCCA+AGG | 0.565355 | 2_4:-52577782 | Msa0334290:CDS |
| AACTCATAGGGCAAATCAGT+GGG | 0.573329 | 2_4:+52578744 | None:intergenic |
| TGGTAGAAAATTAGCTCACA+AGG | 0.574909 | 2_4:-52578504 | Msa0334290:CDS |
| GAAGGACTATACGCTTTACA+CGG | 0.574930 | 2_4:-52579861 | Msa0334290:CDS |
| AGGAGAAGTAGTGTGGAAGA+GGG | 0.575038 | 2_4:-52577939 | Msa0334290:CDS |
| CGCAATATATCAGGTTGCCA+AGG | 0.580060 | 2_4:-52577579 | Msa0334290:three_prime_UTR |
| GAATTTGCCACGGCATCAGT+GGG | 0.580597 | 2_4:-52577898 | Msa0334290:CDS |
| TGCCTTACCGTGTAGGTAGT+GGG | 0.583545 | 2_4:+52578651 | None:intergenic |
| GTACAGAGAAAGAAAGACAT+AGG | 0.584385 | 2_4:+52577871 | None:intergenic |
| ATCGGCCAAGGAAAGATGCA+TGG | 0.587677 | 2_4:-52577770 | Msa0334290:CDS |
| AGATTCACTTCCTTCACTGG+AGG | 0.588226 | 2_4:+52578307 | None:intergenic |
| GCTGTTATAGCTAAGCATGC+TGG | 0.588262 | 2_4:-52578929 | Msa0334290:CDS |
| TGATTGGTCCACAAGTGGCT+AGG | 0.590458 | 2_4:-52577685 | Msa0334290:CDS |
| CCAGGGAACCTAGCCACTTG+TGG | 0.590886 | 2_4:+52577677 | None:intergenic |
| CACAATACCCACTACCTACA+CGG | 0.590900 | 2_4:-52578658 | Msa0334290:intron |
| GGAACTTAAGCCAGATGAGG+TGG | 0.592388 | 2_4:-52578390 | Msa0334290:CDS |
| GGTAACTGTCTGTCTTTAGC+CGG | 0.594474 | 2_4:-52580495 | Msa0334290:five_prime_UTR |
| GATAGAGCGCAAGAATTGAT+CGG | 0.594878 | 2_4:-52577788 | Msa0334290:CDS |
| GTAAGGTAGAGAAAGGAGTG+AGG | 0.595969 | 2_4:+52580358 | None:intergenic |
| GTACAGATTGACAGGAAACA+AGG | 0.596022 | 2_4:-52577852 | Msa0334290:CDS |
| ACAAGCGTAAGAGTTACTCC+AGG | 0.600044 | 2_4:+52578254 | None:intergenic |
| ATGGCATGGGAAGAAATACT+GGG | 0.602526 | 2_4:-52578459 | Msa0334290:CDS |
| CCATGCCATTCATACATCAA+AGG | 0.604422 | 2_4:+52578473 | None:intergenic |
| CTACCAAGTAACCAAGAATG+TGG | 0.605333 | 2_4:-52579804 | Msa0334290:CDS |
| AATCTGACCGTCTTGTGCAT+TGG | 0.606132 | 2_4:-52578289 | Msa0334290:CDS |
| AAGGACTATACGCTTTACAC+GGG | 0.607848 | 2_4:-52579860 | Msa0334290:CDS |
| AAGCGAGTTGGAATTTGCCA+CGG | 0.608188 | 2_4:-52577908 | Msa0334290:CDS |
| GAACATATGCCTTACCGTGT+AGG | 0.609489 | 2_4:+52578644 | None:intergenic |
| GATTCACTTCCTTCACTGGA+GGG | 0.611653 | 2_4:+52578308 | None:intergenic |
| TGGCAACCTGATATATTGCG+TGG | 0.612006 | 2_4:+52577582 | None:intergenic |
| AGGTGTTCCCACTGATGCCG+TGG | 0.612064 | 2_4:+52577891 | None:intergenic |
| TTTAGCCGGAGATGTCTGAT+CGG | 0.613413 | 2_4:-52580481 | Msa0334290:exon |
| GGAGAAGTAGTGTGGAAGAG+GGG | 0.618091 | 2_4:-52577938 | Msa0334290:CDS |
| TTCTAGTGGGAACCGTGTGA+AGG | 0.618170 | 2_4:-52579879 | Msa0334290:CDS |
| GTGAGACATGGGGTTCTAGT+GGG | 0.619681 | 2_4:-52579892 | Msa0334290:CDS |
| CAGACAGTTACCGTCTAGAG+AGG | 0.620683 | 2_4:+52580506 | None:intergenic |
| TGTTTATCGACCTCTCTAGA+CGG | 0.620955 | 2_4:-52580516 | Msa0334290:five_prime_UTR |
| TTACCTTAGACAATTCAAAG+AGG | 0.627912 | 2_4:-52578885 | Msa0334290:intron |
| AAAGAGTAAACTGTGATGCA+CGG | 0.628743 | 2_4:-52577476 | Msa0334290:three_prime_UTR |
| TAACTCATAGGGCAAATCAG+TGG | 0.629793 | 2_4:+52578743 | None:intergenic |
| CTTTGATGTATGAATGGCAT+GGG | 0.630619 | 2_4:-52578472 | Msa0334290:CDS |
| TGACTCAAAGTTCATAGCCA+GGG | 0.635792 | 2_4:+52577660 | None:intergenic |
| AGGACTATACGCTTTACACG+GGG | 0.636276 | 2_4:-52579859 | Msa0334290:CDS |
| AAGATGCAGGAGAAGTAGTG+TGG | 0.637341 | 2_4:-52577946 | Msa0334290:CDS |
| AGACATGATTGGTCCACAAG+TGG | 0.638089 | 2_4:-52577690 | Msa0334290:CDS |
| GGCCACAGATGAACGTCACA+CGG | 0.640066 | 2_4:+52578975 | None:intergenic |
| TACGCTTGTAAAAGCAGCCG+AGG | 0.641247 | 2_4:-52578240 | Msa0334290:intron |
| CGTGACACCAATGCACAAGA+CGG | 0.665767 | 2_4:+52578282 | None:intergenic |
| CATGGAACTTAAGCCAGATG+AGG | 0.673066 | 2_4:-52578393 | Msa0334290:CDS |
| GTTGTCTCTGGCATGAATGG+TGG | 0.674768 | 2_4:+52580440 | None:intergenic |
| AGCCGTGTGACGTTCATCTG+TGG | 0.685914 | 2_4:-52578977 | Msa0334290:CDS |
| CCTTTGATGTATGAATGGCA+TGG | 0.688871 | 2_4:-52578473 | Msa0334290:CDS |
| GATGAGGTGGAAGATGTCAA+GGG | 0.689281 | 2_4:-52578377 | Msa0334290:CDS |
| AAACAAGGAGTACTTGTACA+GGG | 0.691885 | 2_4:-52577837 | Msa0334290:CDS |
| GGTAGAAAATTAGCTCACAA+GGG | 0.710711 | 2_4:-52578503 | Msa0334290:CDS |
| GGACTATACGCTTTACACGG+GGG | 0.714635 | 2_4:-52579858 | Msa0334290:CDS |
| AAGGTGGTGAGTGAGACATG+GGG | 0.727439 | 2_4:-52579902 | Msa0334290:CDS |
| GGCCAAGGAAAGATGCATGG+AGG | 0.732329 | 2_4:-52577767 | Msa0334290:CDS |
| AAAGCGTATAGTCCTTCACA+CGG | 0.761639 | 2_4:+52579867 | None:intergenic |
| TGGCATGGGAAGAAATACTG+GGG | 0.762911 | 2_4:-52578458 | Msa0334290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCATTATAAAAAAAAAAAA+GGG | + | chr2_4:52579793-52579812 | None:intergenic | 10.0% |
| !! | AGAAAAAATGAAAATTATTG+TGG | + | chr2_4:52577723-52577742 | None:intergenic | 15.0% |
| !!! | TAATTTTCATTTTTTCTTTG+TGG | - | chr2_4:52577726-52577745 | Msa0334290:CDS | 15.0% |
| !!! | AATTTTCATTTTTTCTTTGT+GGG | - | chr2_4:52577727-52577746 | Msa0334290:CDS | 15.0% |
| !!! | TTGTTTATGTATTACTTTTA+AGG | - | chr2_4:52578078-52578097 | Msa0334290:intron | 15.0% |
| !! | CCTCATTATAAAAAAAAAAA+AGG | + | chr2_4:52579794-52579813 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTTTTTTATAATG+AGG | - | chr2_4:52579791-52579810 | Msa0334290:CDS | 15.0% |
| !! | ATACATTTGTAATATACATA+CGG | + | chr2_4:52580381-52580400 | None:intergenic | 15.0% |
| !!! | TCAATTTCTGTTTTTCATTT+TGG | - | chr2_4:52577756-52577775 | Msa0334290:CDS | 20.0% |
| !!! | TTTATGTATTACTTTTAAGG+TGG | - | chr2_4:52578081-52578100 | Msa0334290:intron | 20.0% |
| !! | TTCATCATAAACCATAAATT+TGG | + | chr2_4:52578567-52578586 | None:intergenic | 20.0% |
| !!! | TTATGATGAATTTTGAAACA+TGG | - | chr2_4:52578577-52578596 | Msa0334290:intron | 20.0% |
| !! | TATTAATTACGTTAAACAGA+TGG | + | chr2_4:52578615-52578634 | None:intergenic | 20.0% |
| !!! | TGTTAATATATTTTGTTGTC+TGG | - | chr2_4:52578819-52578838 | Msa0334290:intron | 20.0% |
| !! | AAACTTTGATTGTTCAATTT+AGG | + | chr2_4:52578937-52578956 | None:intergenic | 20.0% |
| !!! | AAATTAAAAGCCAATTTTCA+TGG | + | chr2_4:52579434-52579453 | None:intergenic | 20.0% |
| !! | CTAATTTCTTTACCATAATT+AGG | - | chr2_4:52579997-52580016 | Msa0334290:intron | 20.0% |
| !!! | TTTACCATAATTAGGTTTTT+GGG | - | chr2_4:52580005-52580024 | Msa0334290:intron | 20.0% |
| !!! | TTCTGTTTTTCATTTTGGTT+AGG | - | chr2_4:52577761-52577780 | Msa0334290:CDS | 25.0% |
| !! | TGTGTTTTCTAATTCTTCTT+AGG | - | chr2_4:52577853-52577872 | Msa0334290:CDS | 25.0% |
| ! | TGCAAAAATGCAATTCAATT+AGG | + | chr2_4:52577879-52577898 | None:intergenic | 25.0% |
| ! | TCACATAAATGCTTATGTAT+AGG | + | chr2_4:52578027-52578046 | None:intergenic | 25.0% |
| ! | TTTATGCTTGAAGATTGTTA+AGG | - | chr2_4:52578228-52578247 | Msa0334290:intron | 25.0% |
| ! | GATTTCTGTACAATTTAATG+TGG | - | chr2_4:52578349-52578368 | Msa0334290:CDS | 25.0% |
| ! | AATGCAATTTAGATGGTTTA+TGG | - | chr2_4:52578402-52578421 | Msa0334290:CDS | 25.0% |
| ! | TAATGAAGTTACATTGGTAT+TGG | + | chr2_4:52578457-52578476 | None:intergenic | 25.0% |
| ! | AGTTGAACATCTGAAAATAA+TGG | + | chr2_4:52578503-52578522 | None:intergenic | 25.0% |
| ! | TTTATCCTTAGGATTAAGTT+AGG | - | chr2_4:52578869-52578888 | Msa0334290:intron | 25.0% |
| ! | TCCAATTTACACATGAATTT+CGG | - | chr2_4:52579178-52579197 | Msa0334290:intron | 25.0% |
| !!! | GTTAAACTTCTTTTTCGTAT+TGG | - | chr2_4:52579203-52579222 | Msa0334290:intron | 25.0% |
| ! | TCATTCTTAAACAAGCATAT+CGG | - | chr2_4:52579312-52579331 | Msa0334290:intron | 25.0% |
| ! | AAAAAAGGGAAATATTACCT+CGG | + | chr2_4:52579779-52579798 | None:intergenic | 25.0% |
| !! | CTTTACCATAATTAGGTTTT+TGG | - | chr2_4:52580004-52580023 | Msa0334290:intron | 25.0% |
| !! | TTACCATAATTAGGTTTTTG+GGG | - | chr2_4:52580006-52580025 | Msa0334290:intron | 25.0% |
| ! | CAAAATTTATTACATCTCCT+TGG | + | chr2_4:52580440-52580459 | None:intergenic | 25.0% |
| ! | TTTAAAACTACGCCTTACAA+CGG | + | chr2_4:52578321-52578340 | None:intergenic | 30.0% |
| AGTGGTTAATGCAATTTAGA+TGG | - | chr2_4:52578395-52578414 | Msa0334290:CDS | 30.0% | |
| AGATGGTTTATGGATATATC+AGG | - | chr2_4:52578412-52578431 | Msa0334290:CDS | 30.0% | |
| TGTGGTTAATGAAGTTACAT+TGG | + | chr2_4:52578463-52578482 | None:intergenic | 30.0% | |
| ATTAACCACAAATTTGAACG+TGG | - | chr2_4:52578473-52578492 | Msa0334290:CDS | 30.0% | |
| ATTTGAACACCTGGAAATTA+TGG | - | chr2_4:52578531-52578550 | Msa0334290:CDS | 30.0% | |
| GTCAATGACATCCAAATTTA+TGG | - | chr2_4:52578553-52578572 | Msa0334290:intron | 30.0% | |
| TACGTTAAACAGATGGTTTA+TGG | + | chr2_4:52578608-52578627 | None:intergenic | 30.0% | |
| CATTTCCTAACTTAATCCTA+AGG | + | chr2_4:52578877-52578896 | None:intergenic | 30.0% | |
| CTTAGGATTAAGTTAGGAAA+TGG | - | chr2_4:52578875-52578894 | Msa0334290:intron | 30.0% | |
| TTACCTTAGACAATTCAAAG+AGG | - | chr2_4:52579114-52579133 | Msa0334290:intron | 30.0% | |
| ATACCTCTTTGAATTGTCTA+AGG | + | chr2_4:52579120-52579139 | None:intergenic | 30.0% | |
| CCAATTTACACATGAATTTC+GGG | - | chr2_4:52579179-52579198 | Msa0334290:intron | 30.0% | |
| !!! | CGTATTGGTGCTTTTATTTT+TGG | - | chr2_4:52579218-52579237 | Msa0334290:intron | 30.0% |
| ! | TTTTTGACAGAAACCAATTG+TGG | - | chr2_4:52579456-52579475 | Msa0334290:intron | 30.0% |
| GTTATAACTTCATCCACAAT+TGG | + | chr2_4:52579472-52579491 | None:intergenic | 30.0% | |
| ! | AGGAATTATGAACGTTTTGA+TGG | - | chr2_4:52579582-52579601 | Msa0334290:intron | 30.0% |
| ATTAAAAATCGTTTCTCGAG+TGG | - | chr2_4:52579661-52579680 | Msa0334290:intron | 30.0% | |
| CTGAAGCTTGTATTTGAATA+TGG | + | chr2_4:52579835-52579854 | None:intergenic | 30.0% | |
| CATATTCAAATACAAGCTTC+AGG | - | chr2_4:52579833-52579852 | Msa0334290:CDS | 30.0% | |
| ! | TCCTTTACATCATATTGACT+CGG | + | chr2_4:52579859-52579878 | None:intergenic | 30.0% |
| TCAGGTTTGTGCAAATTTAT+CGG | + | chr2_4:52579883-52579902 | None:intergenic | 30.0% | |
| ! | ATTTTGCAGTGTTCATTGTA+TGG | - | chr2_4:52579912-52579931 | Msa0334290:intron | 30.0% |
| TATCCCCAAAAACCTAATTA+TGG | + | chr2_4:52580012-52580031 | None:intergenic | 30.0% | |
| !! | ATAATTAGGTTTTTGGGGAT+AGG | - | chr2_4:52580011-52580030 | Msa0334290:intron | 30.0% |
| !! | TAATTAGGTTTTTGGGGATA+GGG | - | chr2_4:52580012-52580031 | Msa0334290:intron | 30.0% |
| TATACCTTTCTAGACATGAT+TGG | - | chr2_4:52580298-52580317 | Msa0334290:intron | 30.0% | |
| ! | AAACTGCAAATTTTGAACTG+TGG | - | chr2_4:52580475-52580494 | Msa0334290:exon | 30.0% |
| !! | TGCTGTAGTTTGTAGTTTTG+AGG | + | chr2_4:52577677-52577696 | None:intergenic | 35.0% |
| AGCACTTCACTTCAAACAAT+TGG | - | chr2_4:52577693-52577712 | Msa0334290:CDS | 35.0% | |
| CAAGTTAGAAACTTTCACGT+TGG | - | chr2_4:52577786-52577805 | Msa0334290:CDS | 35.0% | |
| TTTCACGTTGGTGCAATAAT+GGG | - | chr2_4:52577798-52577817 | Msa0334290:CDS | 35.0% | |
| !! | AACGGCATACTTGGTTTTTA+AGG | - | chr2_4:52578171-52578190 | Msa0334290:intron | 35.0% |
| ACTAAGATCATCCACATTCT+TGG | + | chr2_4:52578209-52578228 | None:intergenic | 35.0% | |
| ATTCTGCTTCAGCAAATTCA+AGG | - | chr2_4:52578257-52578276 | Msa0334290:CDS | 35.0% | |
| TACTCTCTATTTCATGCATC+TGG | - | chr2_4:52578280-52578299 | Msa0334290:CDS | 35.0% | |
| TTTAATGTGGACAACTTTCG+CGG | - | chr2_4:52578362-52578381 | Msa0334290:CDS | 35.0% | |
| !! | TTTCGCGGTAACTTTTTAAG+TGG | - | chr2_4:52578377-52578396 | Msa0334290:CDS | 35.0% |
| ! | TGAAGTTACATTGGTATTGG+TGG | + | chr2_4:52578454-52578473 | None:intergenic | 35.0% |
| GTTAACCACGTTCAAATTTG+TGG | + | chr2_4:52578481-52578500 | None:intergenic | 35.0% | |
| TGTCATTGACCATAATTTCC+AGG | + | chr2_4:52578543-52578562 | None:intergenic | 35.0% | |
| TTGGCTACAACTTCTATAAG+TGG | + | chr2_4:52578657-52578676 | None:intergenic | 35.0% | |
| CAACGAAATTTAGACAGCTT+TGG | + | chr2_4:52578676-52578695 | None:intergenic | 35.0% | |
| ATTTGCTCGTGTTTATCCTT+AGG | - | chr2_4:52578858-52578877 | Msa0334290:intron | 35.0% | |
| ATCAAAGTTTCAGCCTGAAA+TGG | - | chr2_4:52578947-52578966 | Msa0334290:CDS | 35.0% | |
| TCAAAGTTTCAGCCTGAAAT+GGG | - | chr2_4:52578948-52578967 | Msa0334290:CDS | 35.0% | |
| CCCGAAATTCATGTGTAAAT+TGG | + | chr2_4:52579182-52579201 | None:intergenic | 35.0% | |
| TTGCCCTATGAGTTATTGTA+TGG | - | chr2_4:52579264-52579283 | Msa0334290:intron | 35.0% | |
| CTGCCATACAATAACTCATA+GGG | + | chr2_4:52579270-52579289 | None:intergenic | 35.0% | |
| TCTGCCATACAATAACTCAT+AGG | + | chr2_4:52579271-52579290 | None:intergenic | 35.0% | |
| AAGGCATATGTTCTTCATCA+TGG | - | chr2_4:52579365-52579384 | Msa0334290:intron | 35.0% | |
| TGGTAGAAAATTAGCTCACA+AGG | - | chr2_4:52579495-52579514 | Msa0334290:intron | 35.0% | |
| GGTAGAAAATTAGCTCACAA+GGG | - | chr2_4:52579496-52579515 | Msa0334290:intron | 35.0% | |
| GATGTCCTTTGATGTATGAA+TGG | - | chr2_4:52579521-52579540 | Msa0334290:intron | 35.0% | |
| CTTTGATGTATGAATGGCAT+GGG | - | chr2_4:52579527-52579546 | Msa0334290:intron | 35.0% | |
| !! | TATGAACGTTTTGATGGACA+TGG | - | chr2_4:52579588-52579607 | Msa0334290:intron | 35.0% |
| GTACAGAGAAAGAAAGACAT+AGG | + | chr2_4:52580131-52580150 | None:intergenic | 35.0% | |
| !! | AAACAAGGAGTACTTGTACA+GGG | - | chr2_4:52580162-52580181 | Msa0334290:intron | 35.0% |
| GACCTTCGAATAAGGAATAA+GGG | + | chr2_4:52580264-52580283 | None:intergenic | 35.0% | |
| AGACCTTCGAATAAGGAATA+AGG | + | chr2_4:52580265-52580284 | None:intergenic | 35.0% | |
| TATTCCTTATTCGAAGGTCT+TGG | - | chr2_4:52580265-52580284 | Msa0334290:intron | 35.0% | |
| !! | TGATATATTGCGTGGTTTTG+AGG | + | chr2_4:52580412-52580431 | None:intergenic | 35.0% |
| TCAAAACCACGCAATATATC+AGG | - | chr2_4:52580411-52580430 | Msa0334290:CDS | 35.0% | |
| AAAGAGTAAACTGTGATGCA+CGG | - | chr2_4:52580523-52580542 | Msa0334290:five_prime_UTR | 35.0% | |
| TGTTTATCGACCTCTCTAGA+CGG | - | chr2_4:52577483-52577502 | Msa0334290:three_prime_UTR | 40.0% | |
| AAAAACCGATCAGACATCTC+CGG | + | chr2_4:52577526-52577545 | None:intergenic | 40.0% | |
| ATGAATGGTGGCAAGTTGTT+CGG | + | chr2_4:52577550-52577569 | None:intergenic | 40.0% | |
| ! | TGTTCTTCAAGTGTTGTCTC+TGG | + | chr2_4:52577574-52577593 | None:intergenic | 40.0% |
| GTGTTTGGTAAGGTAGAGAA+AGG | + | chr2_4:52577651-52577670 | None:intergenic | 40.0% | |
| ! | TTTGAGGTGAGTGTTTGGTA+AGG | + | chr2_4:52577661-52577680 | None:intergenic | 40.0% |
| !!! | GTAGTTTTGAGGTGAGTGTT+TGG | + | chr2_4:52577666-52577685 | None:intergenic | 40.0% |
| CTTTCACGTTGGTGCAATAA+TGG | - | chr2_4:52577797-52577816 | Msa0334290:CDS | 40.0% | |
| AAAGCGTATAGTCCTTCACA+CGG | + | chr2_4:52578135-52578154 | None:intergenic | 40.0% | |
| GAAGGACTATACGCTTTACA+CGG | - | chr2_4:52578138-52578157 | Msa0334290:intron | 40.0% | |
| AAGGACTATACGCTTTACAC+GGG | - | chr2_4:52578139-52578158 | Msa0334290:intron | 40.0% | |
| CTACCAAGTAACCAAGAATG+TGG | - | chr2_4:52578195-52578214 | Msa0334290:intron | 40.0% | |
| CATCCACATTCTTGGTTACT+TGG | + | chr2_4:52578201-52578220 | None:intergenic | 40.0% | |
| GACTTAACTTAGCCGTTGTA+AGG | - | chr2_4:52578306-52578325 | Msa0334290:CDS | 40.0% | |
| TCCATGTAGATTTGAACACC+TGG | - | chr2_4:52578522-52578541 | Msa0334290:CDS | 40.0% | |
| TCCAGGTGTTCAAATCTACA+TGG | + | chr2_4:52578526-52578545 | None:intergenic | 40.0% | |
| GTGGTTAATGCACTTCGAAT+AGG | + | chr2_4:52578638-52578657 | None:intergenic | 40.0% | |
| AACTCATAGGGCAAATCAGT+GGG | + | chr2_4:52579258-52579277 | None:intergenic | 40.0% | |
| TAACTCATAGGGCAAATCAG+TGG | + | chr2_4:52579259-52579278 | None:intergenic | 40.0% | |
| GAGTTATTGTATGGCAGAAC+AGG | - | chr2_4:52579273-52579292 | Msa0334290:intron | 40.0% | |
| ATGGCAGAACAGGTTACTTA+TGG | - | chr2_4:52579283-52579302 | Msa0334290:intron | 40.0% | |
| TGGCAGAACAGGTTACTTAT+GGG | - | chr2_4:52579284-52579303 | Msa0334290:intron | 40.0% | |
| !! | TGTCGACTTGCCATGAAAAT+TGG | - | chr2_4:52579421-52579440 | Msa0334290:intron | 40.0% |
| GTGGATGAAGTTATAACAGC+TGG | - | chr2_4:52579475-52579494 | Msa0334290:intron | 40.0% | |
| CCATGCCATTCATACATCAA+AGG | + | chr2_4:52579529-52579548 | None:intergenic | 40.0% | |
| CCTTTGATGTATGAATGGCA+TGG | - | chr2_4:52579526-52579545 | Msa0334290:intron | 40.0% | |
| AATGGCATGGGAAGAAATAC+TGG | - | chr2_4:52579539-52579558 | Msa0334290:intron | 40.0% | |
| ATGGCATGGGAAGAAATACT+GGG | - | chr2_4:52579540-52579559 | Msa0334290:intron | 40.0% | |
| GCCGAGTCAATATGATGTAA+AGG | - | chr2_4:52579855-52579874 | Msa0334290:CDS | 40.0% | |
| TTGCACAAACCTGATTGCAA+TGG | - | chr2_4:52579889-52579908 | Msa0334290:CDS | 40.0% | |
| CTGCAAAATCCATTGCAATC+AGG | + | chr2_4:52579901-52579920 | None:intergenic | 40.0% | |
| CTTTCTCTGTACAGATTGAC+AGG | - | chr2_4:52580139-52580158 | Msa0334290:intron | 40.0% | |
| GTACAGATTGACAGGAAACA+AGG | - | chr2_4:52580147-52580166 | Msa0334290:intron | 40.0% | |
| !! | GAAACAAGGAGTACTTGTAC+AGG | - | chr2_4:52580161-52580180 | Msa0334290:intron | 40.0% |
| GATAGAGCGCAAGAATTGAT+CGG | - | chr2_4:52580211-52580230 | Msa0334290:intron | 40.0% | |
| TGGACCAATCATGTCTAGAA+AGG | + | chr2_4:52580305-52580324 | None:intergenic | 40.0% | |
| TGACTCAAAGTTCATAGCCA+GGG | + | chr2_4:52580342-52580361 | None:intergenic | 40.0% | |
| GGTAACTGTCTGTCTTTAGC+CGG | - | chr2_4:52577504-52577523 | Msa0334290:three_prime_UTR | 45.0% | |
| TTTAGCCGGAGATGTCTGAT+CGG | - | chr2_4:52577518-52577537 | Msa0334290:three_prime_UTR | 45.0% | |
| AGTGTTGTCTCTGGCATGAA+TGG | + | chr2_4:52577565-52577584 | None:intergenic | 45.0% | |
| !! | TGGTGTTGGTGTTTGAGAAG+AGG | + | chr2_4:52577611-52577630 | None:intergenic | 45.0% |
| GTAAGGTAGAGAAAGGAGTG+AGG | + | chr2_4:52577644-52577663 | None:intergenic | 45.0% | |
| !! | ACGTTGGTGCAATAATGGGT+CGG | - | chr2_4:52577802-52577821 | Msa0334290:CDS | 45.0% |
| TTAAGGTGGTGAGTGAGACA+TGG | - | chr2_4:52578095-52578114 | Msa0334290:intron | 45.0% | |
| TAAGGTGGTGAGTGAGACAT+GGG | - | chr2_4:52578096-52578115 | Msa0334290:intron | 45.0% | |
| AGGACTATACGCTTTACACG+GGG | - | chr2_4:52578140-52578159 | Msa0334290:intron | 45.0% | |
| AAGTTTCAGCCTGAAATGGG+AGG | - | chr2_4:52578951-52578970 | Msa0334290:CDS | 45.0% | |
| AAATGGGAGGATGGGAAGTA+AGG | - | chr2_4:52578964-52578983 | Msa0334290:CDS | 45.0% | |
| GCTGTTATAGCTAAGCATGC+TGG | - | chr2_4:52579070-52579089 | Msa0334290:intron | 45.0% | |
| CACAATACCCACTACCTACA+CGG | - | chr2_4:52579341-52579360 | Msa0334290:intron | 45.0% | |
| GAACATATGCCTTACCGTGT+AGG | + | chr2_4:52579358-52579377 | None:intergenic | 45.0% | |
| TGGCATGGGAAGAAATACTG+GGG | - | chr2_4:52579541-52579560 | Msa0334290:intron | 45.0% | |
| CATGGAACTTAAGCCAGATG+AGG | - | chr2_4:52579606-52579625 | Msa0334290:intron | 45.0% | |
| TTGACATCTTCCACCTCATC+TGG | + | chr2_4:52579622-52579641 | None:intergenic | 45.0% | |
| AGATGAGGTGGAAGATGTCA+AGG | - | chr2_4:52579621-52579640 | Msa0334290:intron | 45.0% | |
| GATGAGGTGGAAGATGTCAA+GGG | - | chr2_4:52579622-52579641 | Msa0334290:intron | 45.0% | |
| GATTCACTTCCTTCACTGGA+GGG | + | chr2_4:52579694-52579713 | None:intergenic | 45.0% | |
| AGATTCACTTCCTTCACTGG+AGG | + | chr2_4:52579695-52579714 | None:intergenic | 45.0% | |
| GTCAGATTCACTTCCTTCAC+TGG | + | chr2_4:52579698-52579717 | None:intergenic | 45.0% | |
| AATCTGACCGTCTTGTGCAT+TGG | - | chr2_4:52579710-52579729 | Msa0334290:intron | 45.0% | |
| ACAAGCGTAAGAGTTACTCC+AGG | + | chr2_4:52579748-52579767 | None:intergenic | 45.0% | |
| ! | TAGGGAATTTTCGCAAGCAG+CGG | - | chr2_4:52580030-52580049 | Msa0334290:intron | 45.0% |
| AAGATGCAGGAGAAGTAGTG+TGG | - | chr2_4:52580053-52580072 | Msa0334290:intron | 45.0% | |
| AGGAGAAGTAGTGTGGAAGA+GGG | - | chr2_4:52580060-52580079 | Msa0334290:intron | 45.0% | |
| ! | AAGCGAGTTGGAATTTGCCA+CGG | - | chr2_4:52580091-52580110 | Msa0334290:intron | 45.0% |
| GAGTACTTGTACAGGGCTAA+AGG | - | chr2_4:52580169-52580188 | Msa0334290:intron | 45.0% | |
| CGCCCTTATTCCTTATTCGA+AGG | - | chr2_4:52580259-52580278 | Msa0334290:intron | 45.0% | |
| TCCTTATTCGAAGGTCTTGG+AGG | - | chr2_4:52580268-52580287 | Msa0334290:intron | 45.0% | |
| TCCTCCAAGACCTTCGAATA+AGG | + | chr2_4:52580272-52580291 | None:intergenic | 45.0% | |
| ATTCGAAGGTCTTGGAGGAA+TGG | - | chr2_4:52580273-52580292 | Msa0334290:intron | 45.0% | |
| ! | AGACATGATTGGTCCACAAG+TGG | - | chr2_4:52580309-52580328 | Msa0334290:CDS | 45.0% |
| GTGACTCAAAGTTCATAGCC+AGG | + | chr2_4:52580343-52580362 | None:intergenic | 45.0% | |
| TGGCAACCTGATATATTGCG+TGG | + | chr2_4:52580420-52580439 | None:intergenic | 45.0% | |
| ! | CGCAATATATCAGGTTGCCA+AGG | - | chr2_4:52580420-52580439 | Msa0334290:CDS | 45.0% |
| CAGACAGTTACCGTCTAGAG+AGG | + | chr2_4:52577496-52577515 | None:intergenic | 50.0% | |
| GTTGTCTCTGGCATGAATGG+TGG | + | chr2_4:52577562-52577581 | None:intergenic | 50.0% | |
| AAGGTGGTGAGTGAGACATG+GGG | - | chr2_4:52578097-52578116 | Msa0334290:intron | 50.0% | |
| ! | AGTGAGACATGGGGTTCTAG+TGG | - | chr2_4:52578106-52578125 | Msa0334290:intron | 50.0% |
| ! | GTGAGACATGGGGTTCTAGT+GGG | - | chr2_4:52578107-52578126 | Msa0334290:intron | 50.0% |
| TTCTAGTGGGAACCGTGTGA+AGG | - | chr2_4:52578120-52578139 | Msa0334290:intron | 50.0% | |
| GGACTATACGCTTTACACGG+GGG | - | chr2_4:52578141-52578160 | Msa0334290:intron | 50.0% | |
| TTACACGGGGGTTCTTGGAA+CGG | - | chr2_4:52578153-52578172 | Msa0334290:intron | 50.0% | |
| GGTTCTTGGAACGGCATACT+TGG | - | chr2_4:52578162-52578181 | Msa0334290:intron | 50.0% | |
| TTCAGCCTGAAATGGGAGGA+TGG | - | chr2_4:52578955-52578974 | Msa0334290:CDS | 50.0% | |
| TCAGCCTGAAATGGGAGGAT+GGG | - | chr2_4:52578956-52578975 | Msa0334290:CDS | 50.0% | |
| ACTTCCCATCCTCCCATTTC+AGG | + | chr2_4:52578963-52578982 | None:intergenic | 50.0% | |
| ! | AGCACCAAGAGCACAAACAC+CGG | + | chr2_4:52579053-52579072 | None:intergenic | 50.0% |
| TACCCACTACCTACACGGTA+AGG | - | chr2_4:52579346-52579365 | Msa0334290:intron | 50.0% | |
| TGCCTTACCGTGTAGGTAGT+GGG | + | chr2_4:52579351-52579370 | None:intergenic | 50.0% | |
| ATGCCTTACCGTGTAGGTAG+TGG | + | chr2_4:52579352-52579371 | None:intergenic | 50.0% | |
| !! | AAATACTGGGGTGCTGCTCA+TGG | - | chr2_4:52579553-52579572 | Msa0334290:intron | 50.0% |
| GGAACTTAAGCCAGATGAGG+TGG | - | chr2_4:52579609-52579628 | Msa0334290:intron | 50.0% | |
| GGCAATTATCCCTCCAGTGA+AGG | - | chr2_4:52579682-52579701 | Msa0334290:intron | 50.0% | |
| CGTGACACCAATGCACAAGA+CGG | + | chr2_4:52579720-52579739 | None:intergenic | 50.0% | |
| !! | CGTCTTGTGCATTGGTGTCA+CGG | - | chr2_4:52579718-52579737 | Msa0334290:intron | 50.0% |
| TACGCTTGTAAAAGCAGCCG+AGG | - | chr2_4:52579759-52579778 | Msa0334290:CDS | 50.0% | |
| CAGGAGAAGTAGTGTGGAAG+AGG | - | chr2_4:52580059-52580078 | Msa0334290:intron | 50.0% | |
| GGAGAAGTAGTGTGGAAGAG+GGG | - | chr2_4:52580061-52580080 | Msa0334290:intron | 50.0% | |
| AGGGGTCTTCTTAAGCGAGT+TGG | - | chr2_4:52580079-52580098 | Msa0334290:intron | 50.0% | |
| GAATTTGCCACGGCATCAGT+GGG | - | chr2_4:52580101-52580120 | Msa0334290:intron | 50.0% | |
| ATCGGCCAAGGAAAGATGCA+TGG | - | chr2_4:52580229-52580248 | Msa0334290:intron | 50.0% | |
| CTCCTCCATGCATCTTTCCT+TGG | + | chr2_4:52580237-52580256 | None:intergenic | 50.0% | |
| ! | TGATTGGTCCACAAGTGGCT+AGG | - | chr2_4:52580314-52580333 | Msa0334290:CDS | 50.0% |
| ! | GAGGTGAGAGAGTGTGGTGT+TGG | + | chr2_4:52577625-52577644 | None:intergenic | 55.0% |
| AGGAGTGAGGTGAGAGAGTG+TGG | + | chr2_4:52577631-52577650 | None:intergenic | 55.0% | |
| ACGCTTTACACGGGGGTTCT+TGG | - | chr2_4:52578148-52578167 | Msa0334290:intron | 55.0% | |
| TGGGAGGATGGGAAGTAAGG+TGG | - | chr2_4:52578967-52578986 | Msa0334290:CDS | 55.0% | |
| AGCCGTGTGACGTTCATCTG+TGG | - | chr2_4:52579022-52579041 | Msa0334290:intron | 55.0% | |
| GGCCACAGATGAACGTCACA+CGG | + | chr2_4:52579027-52579046 | None:intergenic | 55.0% | |
| ! | CAAGAGCACAAACACCGGCA+CGG | + | chr2_4:52579048-52579067 | None:intergenic | 55.0% |
| GGAATTTGCCACGGCATCAG+TGG | - | chr2_4:52580100-52580119 | Msa0334290:intron | 55.0% | |
| GCGCAAGAATTGATCGGCCA+AGG | - | chr2_4:52580217-52580236 | Msa0334290:intron | 55.0% | |
| GGCCAAGGAAAGATGCATGG+AGG | - | chr2_4:52580232-52580251 | Msa0334290:intron | 55.0% | |
| ACGTTCATCTGTGGCCGTGC+CGG | - | chr2_4:52579031-52579050 | Msa0334290:intron | 60.0% | |
| ! | CGTGCCGGTGTTTGTGCTCT+TGG | - | chr2_4:52579046-52579065 | Msa0334290:intron | 60.0% |
| !! | GGTGCTGCTCATGGACTTGC+AGG | - | chr2_4:52579562-52579581 | Msa0334290:intron | 60.0% |
| !! | CATTGGTGTCACGGTGCTCC+TGG | - | chr2_4:52579727-52579746 | Msa0334290:intron | 60.0% |
| TCGCAAGCAGCGGAAGATGC+AGG | - | chr2_4:52580040-52580059 | Msa0334290:intron | 60.0% | |
| AGGTGTTCCCACTGATGCCG+TGG | + | chr2_4:52580111-52580130 | None:intergenic | 60.0% | |
| CCAGGGAACCTAGCCACTTG+TGG | + | chr2_4:52580325-52580344 | None:intergenic | 60.0% | |
| CCACAAGTGGCTAGGTTCCC+TGG | - | chr2_4:52580322-52580341 | Msa0334290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52577469 | 52580552 | 52577469 | ID=Msa0334290;Name=Msa0334290 |
| chr2_4 | mRNA | 52577469 | 52580552 | 52577469 | ID=Msa0334290-mRNA-1;Parent=Msa0334290;Name=Msa0334290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=60|1|1|1|1|1|6|195|415 |
| chr2_4 | exon | 52577469 | 52578002 | 52577469 | ID=Msa0334290-mRNA-1:exon:15837;Parent=Msa0334290-mRNA-1 |
| chr2_4 | exon | 52578241 | 52578555 | 52578241 | ID=Msa0334290-mRNA-1:exon:15836;Parent=Msa0334290-mRNA-1 |
| chr2_4 | exon | 52578659 | 52578775 | 52578659 | ID=Msa0334290-mRNA-1:exon:15835;Parent=Msa0334290-mRNA-1 |
| chr2_4 | exon | 52578886 | 52578997 | 52578886 | ID=Msa0334290-mRNA-1:exon:15834;Parent=Msa0334290-mRNA-1 |
| chr2_4 | exon | 52579743 | 52579921 | 52579743 | ID=Msa0334290-mRNA-1:exon:15833;Parent=Msa0334290-mRNA-1 |
| chr2_4 | exon | 52580307 | 52580552 | 52580307 | ID=Msa0334290-mRNA-1:exon:15832;Parent=Msa0334290-mRNA-1 |
| chr2_4 | five_prime_UTR | 52580493 | 52580552 | 52580493 | ID=Msa0334290-mRNA-1:five_prime_utr;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52580307 | 52580492 | 52580307 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52579743 | 52579921 | 52579743 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52578886 | 52578997 | 52578886 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52578659 | 52578775 | 52578659 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52578241 | 52578555 | 52578241 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | CDS | 52577664 | 52578002 | 52577664 | ID=Msa0334290-mRNA-1:cds;Parent=Msa0334290-mRNA-1 |
| chr2_4 | three_prime_UTR | 52577469 | 52577663 | 52577469 | ID=Msa0334290-mRNA-1:three_prime_utr;Parent=Msa0334290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
