Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504020 | XP_013460118.1 | 96.386 | 166 | 6 | 0 | 1 | 166 | 1 | 166 | 1.00e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504020 | B7FGG7 | 96.386 | 166 | 6 | 0 | 1 | 166 | 1 | 166 | 4.78e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0504020 | -0.851770 | 7.149272e-61 | -8.615850e-47 |
| Msa0023000 | Msa0504020 | 0.846579 | 1.988359e-59 | -8.615850e-47 |
| Msa0030380 | Msa0504020 | 0.831287 | 1.818202e-55 | -8.615850e-47 |
| Msa0032580 | Msa0504020 | 0.808996 | 2.353286e-50 | -8.615850e-47 |
| Msa0044710 | Msa0504020 | 0.824123 | 9.569416e-54 | -8.615850e-47 |
| Msa0052640 | Msa0504020 | 0.806096 | 9.708222e-50 | -8.615850e-47 |
| Msa0052770 | Msa0504020 | 0.811445 | 6.976163e-51 | -8.615850e-47 |
| Msa0058300 | Msa0504020 | 0.819402 | 1.183595e-52 | -8.615850e-47 |
| Msa0091570 | Msa0504020 | 0.816461 | 5.465370e-52 | -8.615850e-47 |
| Msa0101710 | Msa0504020 | 0.824846 | 6.468485e-54 | -8.615850e-47 |
| Msa0106670 | Msa0504020 | 0.802675 | 5.014153e-49 | -8.615850e-47 |
| Msa0115270 | Msa0504020 | 0.853732 | 1.966619e-61 | -8.615850e-47 |
| Msa0115390 | Msa0504020 | 0.818652 | 1.753159e-52 | -8.615850e-47 |
| Msa0118780 | Msa0504020 | 0.824128 | 9.547511e-54 | -8.615850e-47 |
| Msa0119850 | Msa0504020 | 0.810823 | 9.518363e-51 | -8.615850e-47 |
| Msa0142420 | Msa0504020 | 0.814139 | 1.793832e-51 | -8.615850e-47 |
| Msa0142660 | Msa0504020 | 0.810440 | 1.151328e-50 | -8.615850e-47 |
| Msa0145730 | Msa0504020 | 0.811863 | 5.658213e-51 | -8.615850e-47 |
| Msa0160550 | Msa0504020 | 0.847698 | 9.810273e-60 | -8.615850e-47 |
| Msa0162100 | Msa0504020 | 0.800622 | 1.322044e-48 | -8.615850e-47 |
| Msa0165660 | Msa0504020 | 0.811344 | 7.337812e-51 | -8.615850e-47 |
| Msa0169140 | Msa0504020 | -0.815487 | 9.015088e-52 | -8.615850e-47 |
| Msa0172970 | Msa0504020 | 0.803539 | 3.322414e-49 | -8.615850e-47 |
| Msa0173740 | Msa0504020 | 0.826191 | 3.106825e-54 | -8.615850e-47 |
| Msa0173820 | Msa0504020 | 0.823268 | 1.518048e-53 | -8.615850e-47 |
| Msa0173830 | Msa0504020 | 0.820710 | 5.939373e-53 | -8.615850e-47 |
| Msa0185640 | Msa0504020 | -0.805723 | 1.162937e-49 | -8.615850e-47 |
| Msa0193120 | Msa0504020 | 0.834227 | 3.385409e-56 | -8.615850e-47 |
| Msa0200950 | Msa0504020 | -0.804727 | 1.879797e-49 | -8.615850e-47 |
| Msa0220720 | Msa0504020 | 0.823125 | 1.638583e-53 | -8.615850e-47 |
| Msa0238250 | Msa0504020 | -0.842001 | 3.375807e-58 | -8.615850e-47 |
| Msa0364710 | Msa0504020 | 0.815749 | 7.883796e-52 | -8.615850e-47 |
| Msa0369220 | Msa0504020 | 0.815566 | 8.659433e-52 | -8.615850e-47 |
| Msa0372340 | Msa0504020 | 0.827548 | 1.472341e-54 | -8.615850e-47 |
| Msa0378080 | Msa0504020 | 0.808520 | 2.974296e-50 | -8.615850e-47 |
| Msa0385580 | Msa0504020 | 0.810319 | 1.222755e-50 | -8.615850e-47 |
| Msa0388050 | Msa0504020 | 0.809077 | 2.261537e-50 | -8.615850e-47 |
| Msa0395960 | Msa0504020 | 0.822024 | 2.954458e-53 | -8.615850e-47 |
| Msa0398950 | Msa0504020 | 0.802723 | 4.900570e-49 | -8.615850e-47 |
| Msa0402790 | Msa0504020 | 0.821449 | 4.014773e-53 | -8.615850e-47 |
| Msa0406880 | Msa0504020 | 0.801777 | 7.673567e-49 | -8.615850e-47 |
| Msa0407930 | Msa0504020 | 0.806700 | 7.243293e-50 | -8.615850e-47 |
| Msa0421780 | Msa0504020 | -0.808800 | 2.591474e-50 | -8.615850e-47 |
| Msa0429290 | Msa0504020 | 0.805899 | 1.068336e-49 | -8.615850e-47 |
| Msa0442200 | Msa0504020 | 0.813083 | 3.063105e-51 | -8.615850e-47 |
| Msa0442850 | Msa0504020 | 0.807615 | 4.635222e-50 | -8.615850e-47 |
| Msa0443500 | Msa0504020 | 0.815638 | 8.343735e-52 | -8.615850e-47 |
| Msa0465790 | Msa0504020 | 0.837908 | 3.938235e-57 | -8.615850e-47 |
| Msa0467900 | Msa0504020 | -0.826749 | 2.286471e-54 | -8.615850e-47 |
| Msa0468160 | Msa0504020 | 0.808398 | 3.157827e-50 | -8.615850e-47 |
| Msa0470180 | Msa0504020 | 0.807484 | 4.942911e-50 | -8.615850e-47 |
| Msa0475580 | Msa0504020 | 0.809773 | 1.603335e-50 | -8.615850e-47 |
| Msa0241640 | Msa0504020 | 0.811709 | 6.111853e-51 | -8.615850e-47 |
| Msa0244270 | Msa0504020 | 0.811392 | 7.163584e-51 | -8.615850e-47 |
| Msa0260950 | Msa0504020 | -0.829536 | 4.873666e-55 | -8.615850e-47 |
| Msa0262310 | Msa0504020 | 0.807250 | 5.539392e-50 | -8.615850e-47 |
| Msa0279700 | Msa0504020 | 0.805311 | 1.419350e-49 | -8.615850e-47 |
| Msa0279790 | Msa0504020 | 0.819426 | 1.168596e-52 | -8.615850e-47 |
| Msa0294560 | Msa0504020 | -0.810302 | 1.233494e-50 | -8.615850e-47 |
| Msa0298700 | Msa0504020 | 0.818081 | 2.360982e-52 | -8.615850e-47 |
| Msa0299870 | Msa0504020 | 0.816893 | 4.372038e-52 | -8.615850e-47 |
| Msa0304920 | Msa0504020 | 0.812212 | 4.748603e-51 | -8.615850e-47 |
| Msa0318250 | Msa0504020 | 0.831582 | 1.538007e-55 | -8.615850e-47 |
| Msa0334290 | Msa0504020 | 0.816670 | 4.905136e-52 | -8.615850e-47 |
| Msa0337240 | Msa0504020 | 0.828968 | 6.691405e-55 | -8.615850e-47 |
| Msa0344830 | Msa0504020 | 0.803828 | 2.893834e-49 | -8.615850e-47 |
| Msa0345350 | Msa0504020 | 0.800144 | 1.654360e-48 | -8.615850e-47 |
| Msa0350990 | Msa0504020 | 0.800601 | 1.334899e-48 | -8.615850e-47 |
| Msa0351030 | Msa0504020 | 0.802117 | 6.532121e-49 | -8.615850e-47 |
| Msa0351080 | Msa0504020 | 0.800392 | 1.472896e-48 | -8.615850e-47 |
| Msa0358170 | Msa0504020 | 0.852034 | 6.014981e-61 | -8.615850e-47 |
| Msa0504020 | Msa0509390 | 0.820440 | 6.852777e-53 | -8.615850e-47 |
| Msa0504020 | Msa0510350 | 0.802002 | 6.895975e-49 | -8.615850e-47 |
| Msa0504020 | Msa0512750 | 0.800606 | 1.331765e-48 | -8.615850e-47 |
| Msa0504020 | Msa0518040 | 0.812863 | 3.422613e-51 | -8.615850e-47 |
| Msa0504020 | Msa0540070 | 0.807687 | 4.476264e-50 | -8.615850e-47 |
| Msa0504020 | Msa0541360 | 0.814137 | 1.795806e-51 | -8.615850e-47 |
| Msa0504020 | Msa0550430 | 0.801056 | 1.077948e-48 | -8.615850e-47 |
| Msa0504020 | Msa0553220 | -0.859633 | 3.614133e-63 | -8.615850e-47 |
| Msa0504020 | Msa0577810 | 0.801886 | 7.287313e-49 | -8.615850e-47 |
| Msa0504020 | Msa0585000 | -0.832215 | 1.073545e-55 | -8.615850e-47 |
| Msa0504020 | Msa0592440 | 0.813207 | 2.876400e-51 | -8.615850e-47 |
| Msa0504020 | Msa0605170 | 0.824815 | 6.579369e-54 | -8.615850e-47 |
| Msa0504020 | Msa0607340 | -0.835027 | 2.130233e-56 | -8.615850e-47 |
| Msa0504020 | Msa0610430 | 0.825387 | 4.819967e-54 | -8.615850e-47 |
| Msa0504020 | Msa0621120 | 0.809689 | 1.671218e-50 | -8.615850e-47 |
| Msa0504020 | Msa0632870 | 0.836079 | 1.154607e-56 | -8.615850e-47 |
| Msa0504020 | Msa0636070 | 0.803773 | 2.970526e-49 | -8.615850e-47 |
| Msa0504020 | Msa0646640 | 0.822775 | 1.977981e-53 | -8.615850e-47 |
| Msa0504020 | Msa0647450 | -0.843253 | 1.569644e-58 | -8.615850e-47 |
| Msa0504020 | Msa0654760 | -0.812930 | 3.309281e-51 | -8.615850e-47 |
| Msa0504020 | Msa0660490 | 0.809287 | 2.038566e-50 | -8.615850e-47 |
| Msa0504020 | Msa0661190 | -0.812092 | 5.044631e-51 | -8.615850e-47 |
| Msa0504020 | Msa0662650 | 0.806268 | 8.933845e-50 | -8.615850e-47 |
| Msa0504020 | Msa0663920 | 0.807740 | 4.360288e-50 | -8.615850e-47 |
| Msa0504020 | Msa0671740 | 0.820116 | 8.128378e-53 | -8.615850e-47 |
| Msa0504020 | Msa0675410 | 0.806773 | 6.991019e-50 | -8.615850e-47 |
| Msa0504020 | Msa0688960 | 0.822286 | 2.569737e-53 | -8.615850e-47 |
| Msa0504020 | Msa0692830 | 0.810629 | 1.048123e-50 | -8.615850e-47 |
| Msa0504020 | Msa0692950 | 0.816120 | 6.514243e-52 | -8.615850e-47 |
| Msa0504020 | Msa0705420 | 0.808553 | 2.927041e-50 | -8.615850e-47 |
| Msa0504020 | Msa0716840 | 0.803999 | 2.665867e-49 | -8.615850e-47 |
| Msa0504020 | Msa0734660 | 0.857435 | 1.635334e-62 | -8.615850e-47 |
| Msa0504020 | Msa0743720 | 0.865329 | 6.389564e-65 | -8.615850e-47 |
| Msa0504020 | Msa0761800 | 0.837183 | 6.041751e-57 | -8.615850e-47 |
| Msa0504020 | Msa0771720 | 0.817579 | 3.064738e-52 | -8.615850e-47 |
| Msa0504020 | Msa0776220 | 0.837862 | 4.044964e-57 | -8.615850e-47 |
| Msa0504020 | Msa0784860 | 0.844418 | 7.656036e-59 | -8.615850e-47 |
| Msa0504020 | Msa0795090 | 0.811050 | 8.498848e-51 | -8.615850e-47 |
| Msa0504020 | Msa0812570 | 0.807454 | 5.015284e-50 | -8.615850e-47 |
| Msa0504020 | Msa0813670 | 0.869019 | 4.235838e-66 | -8.615850e-47 |
| Msa0504020 | Msa0813720 | 0.861548 | 9.496443e-64 | -8.615850e-47 |
| Msa0504020 | Msa0813740 | 0.820210 | 7.736473e-53 | -8.615850e-47 |
| Msa0504020 | Msa0819030 | -0.802509 | 5.424230e-49 | -8.615850e-47 |
| Msa0504020 | Msa0824680 | 0.816084 | 6.636550e-52 | -8.615850e-47 |
| Msa0504020 | Msa0842210 | 0.818106 | 2.330902e-52 | -8.615850e-47 |
| Msa0504020 | Msa0849030 | 0.805264 | 1.451806e-49 | -8.615850e-47 |
| Msa0504020 | Msa0854120 | 0.825412 | 4.753658e-54 | -8.615850e-47 |
| Msa0504020 | Msa0870150 | 0.813807 | 2.123565e-51 | -8.615850e-47 |
| Msa0504020 | Msa0921780 | 0.801578 | 8.428944e-49 | -8.615850e-47 |
| Msa0504020 | Msa0926460 | 0.801943 | 7.091640e-49 | -8.615850e-47 |
| Msa0504020 | Msa0927260 | 0.804389 | 2.211762e-49 | -8.615850e-47 |
| Msa0504020 | Msa0935850 | 0.804487 | 2.110359e-49 | -8.615850e-47 |
| Msa0504020 | Msa0949600 | 0.817081 | 3.967258e-52 | -8.615850e-47 |
| Msa0504020 | Msa0993290 | 0.811734 | 6.037729e-51 | -8.615850e-47 |
| Msa0504020 | Msa0993600 | 0.802443 | 5.595831e-49 | -8.615850e-47 |
| Msa0504020 | Msa1004900 | -0.806666 | 7.364142e-50 | -8.615850e-47 |
| Msa0504020 | Msa1007610 | -0.803631 | 3.179660e-49 | -8.615850e-47 |
| Msa0504020 | Msa1009820 | 0.814152 | 1.781938e-51 | -8.615850e-47 |
| Msa0504020 | Msa1012830 | 0.820888 | 5.405418e-53 | -8.615850e-47 |
| Msa0504020 | Msa1037420 | 0.827676 | 1.371704e-54 | -8.615850e-47 |
| Msa0504020 | Msa1046060 | 0.801853 | 7.400305e-49 | -8.615850e-47 |
| Msa0504020 | Msa1051200 | 0.844821 | 5.960657e-59 | -8.615850e-47 |
| Msa0504020 | Msa1072460 | -0.820920 | 5.315430e-53 | -8.615850e-47 |
| Msa0504020 | Msa1087710 | 0.802115 | 6.536915e-49 | -8.615850e-47 |
| Msa0504020 | Msa1111630 | 0.803789 | 2.947880e-49 | -8.615850e-47 |
| Msa0504020 | Msa1123810 | 0.803256 | 3.801513e-49 | -8.615850e-47 |
| Msa0504020 | Msa1137700 | 0.827754 | 1.313420e-54 | -8.615850e-47 |
| Msa0504020 | Msa1143930 | -0.838019 | 3.686223e-57 | -8.615850e-47 |
| Msa0504020 | Msa1171870 | 0.811763 | 5.948685e-51 | -8.615850e-47 |
| Msa0504020 | Msa1173140 | 0.807876 | 4.079254e-50 | -8.615850e-47 |
| Msa0504020 | Msa1188070 | 0.811983 | 5.329331e-51 | -8.615850e-47 |
| Msa0504020 | Msa1201430 | -0.808351 | 3.231519e-50 | -8.615850e-47 |
| Msa0504020 | Msa1204980 | -0.802864 | 4.583005e-49 | -8.615850e-47 |
| Msa0504020 | Msa1205010 | -0.807378 | 5.205572e-50 | -8.615850e-47 |
| Msa0504020 | Msa1211890 | 0.804973 | 1.669941e-49 | -8.615850e-47 |
| Msa0504020 | Msa1217430 | -0.830201 | 3.356402e-55 | -8.615850e-47 |
| Msa0504020 | Msa1224810 | 0.803038 | 4.218684e-49 | -8.615850e-47 |
| Msa0504020 | Msa1244250 | 0.805749 | 1.148823e-49 | -8.615850e-47 |
| Msa0504020 | Msa1245540 | 0.815705 | 8.063395e-52 | -8.615850e-47 |
| Msa0504020 | Msa1256540 | -0.804001 | 2.663506e-49 | -8.615850e-47 |
| Msa0504020 | Msa1260130 | 0.818819 | 1.606162e-52 | -8.615850e-47 |
| Msa0504020 | Msa1262920 | 0.807017 | 6.205758e-50 | -8.615850e-47 |
| Msa0504020 | Msa1271210 | 0.804322 | 2.283249e-49 | -8.615850e-47 |
| Msa0504020 | Msa1275360 | 0.837248 | 5.812280e-57 | -8.615850e-47 |
| Msa0504020 | Msa1291890 | 0.808670 | 2.762745e-50 | -8.615850e-47 |
| Msa0504020 | Msa1300050 | 0.816800 | 4.588307e-52 | -8.615850e-47 |
| Msa0504020 | Msa1302100 | 0.813555 | 2.412644e-51 | -8.615850e-47 |
| Msa0504020 | Msa1302190 | -0.833156 | 6.270138e-56 | -8.615850e-47 |
| Msa0504020 | Msa1306430 | 0.809206 | 2.121922e-50 | -8.615850e-47 |
| Msa0504020 | Msa1306800 | 0.800448 | 1.434698e-48 | -8.615850e-47 |
| Msa0504020 | Msa1322490 | 0.816157 | 6.389838e-52 | -8.615850e-47 |
| Msa0504020 | Msa1332040 | -0.806786 | 6.945252e-50 | -8.615850e-47 |
| Msa0504020 | Msa1336950 | 0.826348 | 2.849509e-54 | -8.615850e-47 |
| Msa0504020 | Msa1348950 | 0.825271 | 5.133985e-54 | -8.615850e-47 |
| Msa0504020 | Msa1353330 | 0.815555 | 8.708417e-52 | -8.615850e-47 |
| Msa0504020 | Msa1362880 | 0.836050 | 1.174414e-56 | -8.615850e-47 |
| Msa0504020 | Msa1369530 | 0.801151 | 1.030970e-48 | -8.615850e-47 |
| Msa0504020 | Msa1385770 | 0.828072 | 1.101253e-54 | -8.615850e-47 |
| Msa0504020 | Msa1386780 | 0.814242 | 1.701873e-51 | -8.615850e-47 |
| Msa0504020 | Msa1391490 | 0.813271 | 2.785000e-51 | -8.615850e-47 |
| Msa0504020 | Msa1395230 | -0.806159 | 9.417073e-50 | -8.615850e-47 |
| Msa0504020 | Msa1398800 | 0.813178 | 2.918937e-51 | -8.615850e-47 |
| Msa0504020 | Msa1409240 | 0.828940 | 6.797416e-55 | -8.615850e-47 |
| Msa0504020 | Msa1419800 | -0.825930 | 3.583220e-54 | -8.615850e-47 |
| Msa0504020 | Msa1434140 | 0.831405 | 1.701074e-55 | -8.615850e-47 |
| Msa0504020 | Msa1440610 | 0.802436 | 5.616693e-49 | -8.615850e-47 |
| Msa0504020 | Msa1449250 | -0.829147 | 6.056662e-55 | -8.615850e-47 |
| Msa0504020 | Msa1453620 | 0.804865 | 1.759572e-49 | -8.615850e-47 |
| Msa0504020 | Msa1453780 | -0.812589 | 3.928504e-51 | -8.615850e-47 |
| Msa0504020 | Msa1454910 | -0.818547 | 1.852087e-52 | -8.615850e-47 |
| Msa0504020 | Msa1464830 | 0.805719 | 1.165431e-49 | -8.615850e-47 |
| Msa0504020 | Msa1465960 | 0.802260 | 6.103203e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504020 | MtrunA17_Chr3g0103711 | 96.386 | 166 | 6 | 0 | 1 | 166 | 1 | 166 | 9.20e-119 | 332 |
| Msa0504020 | MtrunA17_Chr5g0401701 | 36.932 | 176 | 97 | 6 | 1 | 166 | 5 | 176 | 2.03e-26 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504020 | AT4G37300.1 | 38.953 | 172 | 90 | 6 | 6 | 166 | 5 | 172 | 9.98e-25 | 94.4 |
Find 34 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATATTTATATTTATT+TGG | 0.092683 | 3_4:-47917374 | None:intergenic |
| CGTTGAAATTGTAGCATTTC+AGG | 0.143934 | 3_4:-47915359 | None:intergenic |
| CCTGTTAGGTTTGTCTGAAT+TGG | 0.287336 | 3_4:-47917252 | None:intergenic |
| TTGGTGCCACTTCTTCAAAA+TGG | 0.336944 | 3_4:-47915262 | None:intergenic |
| CTTTCACCACAGACAGGAAA+AGG | 0.363878 | 3_4:+47916997 | Msa0504020:intron |
| TGTCAGTTATCACTCCTGTT+AGG | 0.385721 | 3_4:-47917266 | None:intergenic |
| GAGTCATGAGTGTCGTTATC+TGG | 0.392302 | 3_4:-47917063 | None:intergenic |
| GGAACCCAGTCATTGGTTGC+TGG | 0.416375 | 3_4:-47917108 | None:intergenic |
| CCAATTCAGACAAACCTAAC+AGG | 0.418079 | 3_4:+47917252 | Msa0504020:CDS |
| TGAAGTAGCTGAAGAATTTG+TGG | 0.418411 | 3_4:+47916172 | Msa0504020:CDS |
| GCAATCCAGCAACCAATGAC+TGG | 0.433217 | 3_4:+47917103 | Msa0504020:CDS |
| AGATGAGTGTCACTTCTGTT+TGG | 0.459511 | 3_4:-47915197 | None:intergenic |
| CTTAGAAATCAAAGAGAAGA+AGG | 0.459526 | 3_4:+47915145 | Msa0504020:five_prime_UTR |
| TTTGTTCAAGGTTATTGTGT+TGG | 0.481796 | 3_4:+47917400 | Msa0504020:three_prime_UTR |
| AGGAGCTGGAACCCAGTCAT+TGG | 0.486673 | 3_4:-47917115 | None:intergenic |
| TTATTGTGTTGGAATATTCA+CGG | 0.502221 | 3_4:+47917411 | Msa0504020:three_prime_UTR |
| GTGATAACTGACATGGAGAA+AGG | 0.514078 | 3_4:+47917276 | Msa0504020:exon |
| GTTCAGAAATTGGTTTACGA+TGG | 0.533628 | 3_4:+47916146 | Msa0504020:intron |
| ATTGGTTGCTGGATTGCCCT+TGG | 0.536224 | 3_4:-47917097 | None:intergenic |
| AATACCTCACTGAAAGGAGC+TGG | 0.537040 | 3_4:-47917129 | None:intergenic |
| TTTCACCACAGACAGGAAAA+GGG | 0.552205 | 3_4:+47916998 | Msa0504020:intron |
| TAGGAACTAACCTTCTCACT+AGG | 0.559745 | 3_4:-47915395 | None:intergenic |
| AAAATATCCCACAATCTGAA+AGG | 0.579354 | 3_4:-47917330 | None:intergenic |
| CAATCCAGCAACCAATGACT+GGG | 0.590043 | 3_4:+47917104 | Msa0504020:CDS |
| ATGTAAAATACCTCACTGAA+AGG | 0.593015 | 3_4:-47917135 | None:intergenic |
| GACTCTCATCACTCTACCAA+GGG | 0.608977 | 3_4:+47917081 | Msa0504020:CDS |
| TGAAAATGATCCTAGTGAGA+AGG | 0.614466 | 3_4:+47915385 | Msa0504020:CDS |
| TGACTCTCATCACTCTACCA+AGG | 0.636237 | 3_4:+47917080 | Msa0504020:CDS |
| ATTGTTATTTGCATTGTACG+AGG | 0.658712 | 3_4:+47917299 | Msa0504020:three_prime_UTR |
| AACAGGAGTGATAACTGACA+TGG | 0.659974 | 3_4:+47917269 | Msa0504020:exon |
| GGTTCCAGCTCCTTTCAGTG+AGG | 0.664768 | 3_4:+47917125 | Msa0504020:CDS |
| TGTCGTTATCTGGTTCTATG+TGG | 0.665597 | 3_4:-47917053 | None:intergenic |
| CGTAGACAAACATCATCACA+CGG | 0.672277 | 3_4:+47916223 | Msa0504020:CDS |
| GAAGCATAGTCACTACGTTG+AGG | 0.682531 | 3_4:-47915299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTATATTTTTTTAAAGA+AGG | - | chr3_4:47916006-47916025 | None:intergenic | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_4:47916384-47916403 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_4:47916385-47916404 | Msa0504020:intron | 10.0% |
| !!! | CATAATTTTATTAACTAAAA+TGG | - | chr3_4:47916789-47916808 | None:intergenic | 10.0% |
| !! | ATTATGATAATAACATAAAA+TGG | + | chr3_4:47916803-47916822 | Msa0504020:intron | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_4:47917377-47917396 | None:intergenic | 10.0% |
| !!! | ACATTATATTTTTTTAAAGA+AGG | - | chr3_4:47916006-47916025 | None:intergenic | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_4:47916384-47916403 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_4:47916385-47916404 | Msa0504020:intron | 10.0% |
| !!! | CATAATTTTATTAACTAAAA+TGG | - | chr3_4:47916789-47916808 | None:intergenic | 10.0% |
| !! | ATTATGATAATAACATAAAA+TGG | + | chr3_4:47916803-47916822 | Msa0504020:intron | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_4:47917377-47917396 | None:intergenic | 10.0% |
| !! | TGGAATATTATTATAGTATA+TGG | - | chr3_4:47915769-47915788 | None:intergenic | 15.0% |
| !! | ATTCAAAAAATAATCTACAA+AGG | - | chr3_4:47915896-47915915 | None:intergenic | 15.0% |
| !!! | GAATATAAAGTTTTTTTTGA+AGG | - | chr3_4:47916434-47916453 | None:intergenic | 15.0% |
| !!! | TATTGATATAATGGATAAAA+GGG | - | chr3_4:47916763-47916782 | None:intergenic | 15.0% |
| !!! | TTATTGATATAATGGATAAA+AGG | - | chr3_4:47916764-47916783 | None:intergenic | 15.0% |
| !!! | AATTTTTAAGATAGTATCAA+TGG | + | chr3_4:47916837-47916856 | Msa0504020:intron | 15.0% |
| !! | TGGAATATTATTATAGTATA+TGG | - | chr3_4:47915769-47915788 | None:intergenic | 15.0% |
| !! | ATTCAAAAAATAATCTACAA+AGG | - | chr3_4:47915896-47915915 | None:intergenic | 15.0% |
| !!! | GAATATAAAGTTTTTTTTGA+AGG | - | chr3_4:47916434-47916453 | None:intergenic | 15.0% |
| !!! | TATTGATATAATGGATAAAA+GGG | - | chr3_4:47916763-47916782 | None:intergenic | 15.0% |
| !!! | TTATTGATATAATGGATAAA+AGG | - | chr3_4:47916764-47916783 | None:intergenic | 15.0% |
| !!! | AATTTTTAAGATAGTATCAA+TGG | + | chr3_4:47916837-47916856 | Msa0504020:intron | 15.0% |
| !!! | ATGTTGATCTTTTCAATTAA+AGG | + | chr3_4:47915937-47915956 | Msa0504020:intron | 20.0% |
| !! | CTGAACATAATTATGTAATA+TGG | - | chr3_4:47916132-47916151 | None:intergenic | 20.0% |
| !! | ACATAATTATGTTCAGAAAT+TGG | + | chr3_4:47916136-47916155 | Msa0504020:intron | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_4:47916263-47916282 | None:intergenic | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_4:47916465-47916484 | None:intergenic | 20.0% |
| !!! | AAATGGTCTTATTGATATAA+TGG | - | chr3_4:47916772-47916791 | None:intergenic | 20.0% |
| !! | TTTGAGAAAATAATAGCATT+TGG | + | chr3_4:47916941-47916960 | Msa0504020:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_4:47917223-47917242 | Msa0504020:intron | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_4:47917388-47917407 | Msa0504020:three_prime_UTR | 20.0% |
| !!! | ATGTTGATCTTTTCAATTAA+AGG | + | chr3_4:47915937-47915956 | Msa0504020:intron | 20.0% |
| !! | CTGAACATAATTATGTAATA+TGG | - | chr3_4:47916132-47916151 | None:intergenic | 20.0% |
| !! | ACATAATTATGTTCAGAAAT+TGG | + | chr3_4:47916136-47916155 | Msa0504020:intron | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_4:47916263-47916282 | None:intergenic | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_4:47916465-47916484 | None:intergenic | 20.0% |
| !!! | AAATGGTCTTATTGATATAA+TGG | - | chr3_4:47916772-47916791 | None:intergenic | 20.0% |
| !! | TTTGAGAAAATAATAGCATT+TGG | + | chr3_4:47916941-47916960 | Msa0504020:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_4:47917223-47917242 | Msa0504020:intron | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_4:47917388-47917407 | Msa0504020:three_prime_UTR | 20.0% |
| ! | GAAGAAGGTTAACAAAAAAA+TGG | + | chr3_4:47915160-47915179 | Msa0504020:exon | 25.0% |
| !! | AGGAAAAAACATTGAGTTTT+AGG | - | chr3_4:47915417-47915436 | None:intergenic | 25.0% |
| !! | TGTGGAAATTAAACTTTTAG+AGG | - | chr3_4:47915437-47915456 | None:intergenic | 25.0% |
| ! | TGGAAATGTAACATATTTAG+AGG | - | chr3_4:47915497-47915516 | None:intergenic | 25.0% |
| ! | CATTAAATAGTGAAGCAAAA+TGG | + | chr3_4:47915568-47915587 | Msa0504020:intron | 25.0% |
| !!! | TGTTAGTTTTTCACACTTTT+TGG | + | chr3_4:47915742-47915761 | Msa0504020:intron | 25.0% |
| !! | TTGATCTTTTCAATTAAAGG+TGG | + | chr3_4:47915940-47915959 | Msa0504020:intron | 25.0% |
| ! | TAAAATTGCACCAATTTGAA+CGG | + | chr3_4:47915971-47915990 | Msa0504020:intron | 25.0% |
| ! | TCAAATAGTGACTTACAAAT+AGG | - | chr3_4:47916064-47916083 | None:intergenic | 25.0% |
| ! | TGGAAAAGAGAGAAAAAAAA+AGG | - | chr3_4:47916112-47916131 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_4:47916565-47916584 | Msa0504020:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_4:47916566-47916585 | Msa0504020:intron | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_4:47917226-47917245 | Msa0504020:intron | 25.0% |
| ! | GAAGAAGGTTAACAAAAAAA+TGG | + | chr3_4:47915160-47915179 | Msa0504020:exon | 25.0% |
| !! | AGGAAAAAACATTGAGTTTT+AGG | - | chr3_4:47915417-47915436 | None:intergenic | 25.0% |
| !! | TGTGGAAATTAAACTTTTAG+AGG | - | chr3_4:47915437-47915456 | None:intergenic | 25.0% |
| ! | TGGAAATGTAACATATTTAG+AGG | - | chr3_4:47915497-47915516 | None:intergenic | 25.0% |
| ! | CATTAAATAGTGAAGCAAAA+TGG | + | chr3_4:47915568-47915587 | Msa0504020:intron | 25.0% |
| !!! | TGTTAGTTTTTCACACTTTT+TGG | + | chr3_4:47915742-47915761 | Msa0504020:intron | 25.0% |
| !! | TTGATCTTTTCAATTAAAGG+TGG | + | chr3_4:47915940-47915959 | Msa0504020:intron | 25.0% |
| ! | TAAAATTGCACCAATTTGAA+CGG | + | chr3_4:47915971-47915990 | Msa0504020:intron | 25.0% |
| ! | TCAAATAGTGACTTACAAAT+AGG | - | chr3_4:47916064-47916083 | None:intergenic | 25.0% |
| ! | TGGAAAAGAGAGAAAAAAAA+AGG | - | chr3_4:47916112-47916131 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_4:47916565-47916584 | Msa0504020:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_4:47916566-47916585 | Msa0504020:intron | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_4:47917226-47917245 | Msa0504020:intron | 25.0% |
| CTTAGAAATCAAAGAGAAGA+AGG | + | chr3_4:47915145-47915164 | Msa0504020:five_prime_UTR | 30.0% | |
| GAAGGTTAACAAAAAAATGG+AGG | + | chr3_4:47915163-47915182 | Msa0504020:exon | 30.0% | |
| TAAATAGTGAAGCAAAATGG+AGG | + | chr3_4:47915571-47915590 | Msa0504020:intron | 30.0% | |
| ! | AAAAGTATATTTGCGTTTGC+CGG | + | chr3_4:47915604-47915623 | Msa0504020:intron | 30.0% |
| CCATAGAAATGTTTGATATC+TGG | - | chr3_4:47915789-47915808 | None:intergenic | 30.0% | |
| CCAGATATCAAACATTTCTA+TGG | + | chr3_4:47915786-47915805 | Msa0504020:intron | 30.0% | |
| GTAAATTAGTCCGTTCAAAT+TGG | - | chr3_4:47915984-47916003 | None:intergenic | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_4:47916258-47916277 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_4:47916315-47916334 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_4:47916490-47916509 | None:intergenic | 30.0% | |
| TTAGAATTATTGTCCAGAGA+TGG | + | chr3_4:47916705-47916724 | Msa0504020:intron | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_4:47916758-47916777 | None:intergenic | 30.0% |
| !! | GATATAATGGATAAAAGGGA+CGG | - | chr3_4:47916759-47916778 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_4:47917138-47917157 | None:intergenic | 30.0% | |
| !! | ATTGTTATTTGCATTGTACG+AGG | + | chr3_4:47917299-47917318 | Msa0504020:three_prime_UTR | 30.0% |
| ! | AGAATTTTCCTTTCAGATTG+TGG | + | chr3_4:47917322-47917341 | Msa0504020:three_prime_UTR | 30.0% |
| ! | GAATTTTCCTTTCAGATTGT+GGG | + | chr3_4:47917323-47917342 | Msa0504020:three_prime_UTR | 30.0% |
| AAAATATCCCACAATCTGAA+AGG | - | chr3_4:47917333-47917352 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_4:47917400-47917419 | Msa0504020:three_prime_UTR | 30.0% | |
| CTTAGAAATCAAAGAGAAGA+AGG | + | chr3_4:47915145-47915164 | Msa0504020:five_prime_UTR | 30.0% | |
| GAAGGTTAACAAAAAAATGG+AGG | + | chr3_4:47915163-47915182 | Msa0504020:exon | 30.0% | |
| TAAATAGTGAAGCAAAATGG+AGG | + | chr3_4:47915571-47915590 | Msa0504020:intron | 30.0% | |
| ! | AAAAGTATATTTGCGTTTGC+CGG | + | chr3_4:47915604-47915623 | Msa0504020:intron | 30.0% |
| CCATAGAAATGTTTGATATC+TGG | - | chr3_4:47915789-47915808 | None:intergenic | 30.0% | |
| CCAGATATCAAACATTTCTA+TGG | + | chr3_4:47915786-47915805 | Msa0504020:intron | 30.0% | |
| GTAAATTAGTCCGTTCAAAT+TGG | - | chr3_4:47915984-47916003 | None:intergenic | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_4:47916258-47916277 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_4:47916315-47916334 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_4:47916490-47916509 | None:intergenic | 30.0% | |
| TTAGAATTATTGTCCAGAGA+TGG | + | chr3_4:47916705-47916724 | Msa0504020:intron | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_4:47916758-47916777 | None:intergenic | 30.0% |
| !! | GATATAATGGATAAAAGGGA+CGG | - | chr3_4:47916759-47916778 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_4:47917138-47917157 | None:intergenic | 30.0% | |
| !! | ATTGTTATTTGCATTGTACG+AGG | + | chr3_4:47917299-47917318 | Msa0504020:three_prime_UTR | 30.0% |
| ! | AGAATTTTCCTTTCAGATTG+TGG | + | chr3_4:47917322-47917341 | Msa0504020:three_prime_UTR | 30.0% |
| ! | GAATTTTCCTTTCAGATTGT+GGG | + | chr3_4:47917323-47917342 | Msa0504020:three_prime_UTR | 30.0% |
| AAAATATCCCACAATCTGAA+AGG | - | chr3_4:47917333-47917352 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_4:47917400-47917419 | Msa0504020:three_prime_UTR | 30.0% | |
| GGTTAACAAAAAAATGGAGG+AGG | + | chr3_4:47915166-47915185 | Msa0504020:exon | 35.0% | |
| AAAAAATGGAGGAGGTTAGA+AGG | + | chr3_4:47915174-47915193 | Msa0504020:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_4:47915243-47915262 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_4:47915256-47915275 | Msa0504020:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_4:47915362-47915381 | None:intergenic | 35.0% | |
| TGAAAATGATCCTAGTGAGA+AGG | + | chr3_4:47915385-47915404 | Msa0504020:CDS | 35.0% | |
| CGATTACGAAACTAGAAATG+TGG | - | chr3_4:47915455-47915474 | None:intergenic | 35.0% | |
| AAAGTATATTTGCGTTTGCC+GGG | + | chr3_4:47915605-47915624 | Msa0504020:intron | 35.0% | |
| TGACTTACAAATAGGACCAA+AGG | - | chr3_4:47916056-47916075 | None:intergenic | 35.0% | |
| CATGACAAGAATATTAGAGG+CGG | - | chr3_4:47916088-47916107 | None:intergenic | 35.0% | |
| GGTCATGACAAGAATATTAG+AGG | - | chr3_4:47916091-47916110 | None:intergenic | 35.0% | |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_4:47916146-47916165 | Msa0504020:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_4:47916172-47916191 | Msa0504020:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_4:47916500-47916519 | Msa0504020:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_4:47916579-47916598 | Msa0504020:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_4:47916580-47916599 | Msa0504020:intron | 35.0% |
| GGTTAACAAAAAAATGGAGG+AGG | + | chr3_4:47915166-47915185 | Msa0504020:exon | 35.0% | |
| AAAAAATGGAGGAGGTTAGA+AGG | + | chr3_4:47915174-47915193 | Msa0504020:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_4:47915243-47915262 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_4:47915256-47915275 | Msa0504020:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_4:47915362-47915381 | None:intergenic | 35.0% | |
| TGAAAATGATCCTAGTGAGA+AGG | + | chr3_4:47915385-47915404 | Msa0504020:CDS | 35.0% | |
| CGATTACGAAACTAGAAATG+TGG | - | chr3_4:47915455-47915474 | None:intergenic | 35.0% | |
| AAAGTATATTTGCGTTTGCC+GGG | + | chr3_4:47915605-47915624 | Msa0504020:intron | 35.0% | |
| TGACTTACAAATAGGACCAA+AGG | - | chr3_4:47916056-47916075 | None:intergenic | 35.0% | |
| CATGACAAGAATATTAGAGG+CGG | - | chr3_4:47916088-47916107 | None:intergenic | 35.0% | |
| GGTCATGACAAGAATATTAG+AGG | - | chr3_4:47916091-47916110 | None:intergenic | 35.0% | |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_4:47916146-47916165 | Msa0504020:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_4:47916172-47916191 | Msa0504020:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_4:47916500-47916519 | Msa0504020:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_4:47916579-47916598 | Msa0504020:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_4:47916580-47916599 | Msa0504020:intron | 35.0% |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_4:47915200-47915219 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_4:47915265-47915284 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_4:47915284-47915303 | None:intergenic | 40.0% |
| TAGGAACTAACCTTCTCACT+AGG | - | chr3_4:47915398-47915417 | None:intergenic | 40.0% | |
| AAGGCAATTATCCTAACCGT+TGG | + | chr3_4:47915704-47915723 | Msa0504020:intron | 40.0% | |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_4:47915723-47915742 | None:intergenic | 40.0% | |
| GCTACTAGTAGTAATGCCTT+TGG | + | chr3_4:47916037-47916056 | Msa0504020:intron | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_4:47916223-47916242 | Msa0504020:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_4:47916991-47917010 | Msa0504020:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_4:47916998-47917017 | Msa0504020:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_4:47917006-47917025 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_4:47917056-47917075 | None:intergenic | 40.0% |
| CCTGTTAGGTTTGTCTGAAT+TGG | - | chr3_4:47917255-47917274 | None:intergenic | 40.0% | |
| CCAATTCAGACAAACCTAAC+AGG | + | chr3_4:47917252-47917271 | Msa0504020:CDS | 40.0% | |
| TGTCAGTTATCACTCCTGTT+AGG | - | chr3_4:47917269-47917288 | None:intergenic | 40.0% | |
| AACAGGAGTGATAACTGACA+TGG | + | chr3_4:47917269-47917288 | Msa0504020:exon | 40.0% | |
| GTGATAACTGACATGGAGAA+AGG | + | chr3_4:47917276-47917295 | Msa0504020:exon | 40.0% | |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_4:47915200-47915219 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_4:47915265-47915284 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_4:47915284-47915303 | None:intergenic | 40.0% |
| TAGGAACTAACCTTCTCACT+AGG | - | chr3_4:47915398-47915417 | None:intergenic | 40.0% | |
| AAGGCAATTATCCTAACCGT+TGG | + | chr3_4:47915704-47915723 | Msa0504020:intron | 40.0% | |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_4:47915723-47915742 | None:intergenic | 40.0% | |
| GCTACTAGTAGTAATGCCTT+TGG | + | chr3_4:47916037-47916056 | Msa0504020:intron | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_4:47916223-47916242 | Msa0504020:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_4:47916991-47917010 | Msa0504020:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_4:47916998-47917017 | Msa0504020:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_4:47917006-47917025 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_4:47917056-47917075 | None:intergenic | 40.0% |
| CCTGTTAGGTTTGTCTGAAT+TGG | - | chr3_4:47917255-47917274 | None:intergenic | 40.0% | |
| CCAATTCAGACAAACCTAAC+AGG | + | chr3_4:47917252-47917271 | Msa0504020:CDS | 40.0% | |
| TGTCAGTTATCACTCCTGTT+AGG | - | chr3_4:47917269-47917288 | None:intergenic | 40.0% | |
| AACAGGAGTGATAACTGACA+TGG | + | chr3_4:47917269-47917288 | Msa0504020:exon | 40.0% | |
| GTGATAACTGACATGGAGAA+AGG | + | chr3_4:47917276-47917295 | Msa0504020:exon | 40.0% | |
| GAAGCATAGTCACTACGTTG+AGG | - | chr3_4:47915302-47915321 | None:intergenic | 45.0% | |
| GGCAGTATATTTGCGTTTGC+CGG | + | chr3_4:47915655-47915674 | Msa0504020:intron | 45.0% | |
| GCAGTATATTTGCGTTTGCC+GGG | + | chr3_4:47915656-47915675 | Msa0504020:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_4:47916997-47917016 | Msa0504020:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_4:47917066-47917085 | None:intergenic | 45.0% |
| TGACTCTCATCACTCTACCA+AGG | + | chr3_4:47917080-47917099 | Msa0504020:CDS | 45.0% | |
| GACTCTCATCACTCTACCAA+GGG | + | chr3_4:47917081-47917100 | Msa0504020:CDS | 45.0% | |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_4:47917104-47917123 | Msa0504020:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_4:47917132-47917151 | None:intergenic | 45.0% | |
| GAAGCATAGTCACTACGTTG+AGG | - | chr3_4:47915302-47915321 | None:intergenic | 45.0% | |
| GGCAGTATATTTGCGTTTGC+CGG | + | chr3_4:47915655-47915674 | Msa0504020:intron | 45.0% | |
| GCAGTATATTTGCGTTTGCC+GGG | + | chr3_4:47915656-47915675 | Msa0504020:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_4:47916997-47917016 | Msa0504020:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_4:47917066-47917085 | None:intergenic | 45.0% |
| TGACTCTCATCACTCTACCA+AGG | + | chr3_4:47917080-47917099 | Msa0504020:CDS | 45.0% | |
| GACTCTCATCACTCTACCAA+GGG | + | chr3_4:47917081-47917100 | Msa0504020:CDS | 45.0% | |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_4:47917104-47917123 | Msa0504020:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_4:47917132-47917151 | None:intergenic | 45.0% | |
| !! | ATTATTAATTATTATGAAAA+TGG | - | chr3_4:47915517-47915536 | None:intergenic | 5.0% |
| !!! | TAAAATTTTATTAACTAAAA+TGG | + | chr3_4:47916875-47916894 | Msa0504020:intron | 5.0% |
| !! | ATTATTAATTATTATGAAAA+TGG | - | chr3_4:47915517-47915536 | None:intergenic | 5.0% |
| !!! | TAAAATTTTATTAACTAAAA+TGG | + | chr3_4:47916875-47916894 | Msa0504020:intron | 5.0% |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_4:47915639-47915658 | None:intergenic | 50.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_4:47915639-47915658 | None:intergenic | 50.0% | |
| GCGTTTGTAGTCCAACGGTT+AGG | - | chr3_4:47915718-47915737 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_4:47916584-47916603 | Msa0504020:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+TGG | + | chr3_4:47916592-47916611 | Msa0504020:intron | 50.0% | |
| CCAACTCGCTTTACCATCTC+TGG | - | chr3_4:47916721-47916740 | None:intergenic | 50.0% | |
| CCAGAGATGGTAAAGCGAGT+TGG | + | chr3_4:47916718-47916737 | Msa0504020:intron | 50.0% | |
| ATTGGTTGCTGGATTGCCCT+TGG | - | chr3_4:47917100-47917119 | None:intergenic | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_4:47917103-47917122 | Msa0504020:CDS | 50.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_4:47915639-47915658 | None:intergenic | 50.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_4:47915639-47915658 | None:intergenic | 50.0% | |
| GCGTTTGTAGTCCAACGGTT+AGG | - | chr3_4:47915718-47915737 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_4:47916584-47916603 | Msa0504020:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+TGG | + | chr3_4:47916592-47916611 | Msa0504020:intron | 50.0% | |
| CCAACTCGCTTTACCATCTC+TGG | - | chr3_4:47916721-47916740 | None:intergenic | 50.0% | |
| CCAGAGATGGTAAAGCGAGT+TGG | + | chr3_4:47916718-47916737 | Msa0504020:intron | 50.0% | |
| ATTGGTTGCTGGATTGCCCT+TGG | - | chr3_4:47917100-47917119 | None:intergenic | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_4:47917103-47917122 | Msa0504020:CDS | 50.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_4:47915630-47915649 | Msa0504020:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_4:47915634-47915653 | Msa0504020:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_4:47915638-47915657 | None:intergenic | 55.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_4:47915630-47915649 | Msa0504020:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_4:47915634-47915653 | Msa0504020:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_4:47915638-47915657 | None:intergenic | 55.0% | |
| GGGCTGGATCGATGGTCTAT+CGG | + | chr3_4:47916600-47916619 | Msa0504020:intron | 55.0% | |
| CGATGGTCTATCGGTGTGTC+TGG | + | chr3_4:47916609-47916628 | Msa0504020:intron | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_4:47917111-47917130 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_4:47917118-47917137 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_4:47917125-47917144 | Msa0504020:CDS | 55.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_4:47915630-47915649 | Msa0504020:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_4:47915634-47915653 | Msa0504020:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_4:47915638-47915657 | None:intergenic | 55.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_4:47915630-47915649 | Msa0504020:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_4:47915634-47915653 | Msa0504020:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_4:47915638-47915657 | None:intergenic | 55.0% | |
| GGGCTGGATCGATGGTCTAT+CGG | + | chr3_4:47916600-47916619 | Msa0504020:intron | 55.0% | |
| CGATGGTCTATCGGTGTGTC+TGG | + | chr3_4:47916609-47916628 | Msa0504020:intron | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_4:47917111-47917130 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_4:47917118-47917137 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_4:47917125-47917144 | Msa0504020:CDS | 55.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_4:47915626-47915645 | None:intergenic | 60.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_4:47915626-47915645 | None:intergenic | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_4:47916747-47916766 | None:intergenic | 60.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_4:47915626-47915645 | None:intergenic | 60.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_4:47915626-47915645 | None:intergenic | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_4:47916747-47916766 | None:intergenic | 60.0% | |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_4:47915617-47915636 | Msa0504020:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_4:47915618-47915637 | Msa0504020:intron | 65.0% | |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_4:47915617-47915636 | Msa0504020:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_4:47915618-47915637 | Msa0504020:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_4:47916731-47916750 | Msa0504020:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_4:47916732-47916751 | Msa0504020:intron | 65.0% |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_4:47915617-47915636 | Msa0504020:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_4:47915618-47915637 | Msa0504020:intron | 65.0% | |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_4:47915617-47915636 | Msa0504020:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_4:47915618-47915637 | Msa0504020:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_4:47916731-47916750 | Msa0504020:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_4:47916732-47916751 | Msa0504020:intron | 65.0% |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_4:47916744-47916763 | None:intergenic | 70.0% | |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_4:47916744-47916763 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 47915102 | 47917431 | 47915102 | ID=Msa0504020;Name=Msa0504020 |
| chr3_4 | mRNA | 47915102 | 47917431 | 47915102 | ID=Msa0504020-mRNA-1;Parent=Msa0504020;Name=Msa0504020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=77|1|1|1|1|1|4|145|166 |
| chr3_4 | exon | 47915102 | 47915406 | 47915102 | ID=Msa0504020-mRNA-1:exon:10296;Parent=Msa0504020-mRNA-1 |
| chr3_4 | exon | 47916152 | 47916244 | 47916152 | ID=Msa0504020-mRNA-1:exon:10297;Parent=Msa0504020-mRNA-1 |
| chr3_4 | exon | 47917009 | 47917146 | 47917009 | ID=Msa0504020-mRNA-1:exon:10298;Parent=Msa0504020-mRNA-1 |
| chr3_4 | exon | 47917245 | 47917431 | 47917245 | ID=Msa0504020-mRNA-1:exon:10299;Parent=Msa0504020-mRNA-1 |
| chr3_4 | five_prime_UTR | 47915102 | 47915178 | 47915102 | ID=Msa0504020-mRNA-1:five_prime_utr;Parent=Msa0504020-mRNA-1 |
| chr3_4 | CDS | 47915179 | 47915406 | 47915179 | ID=Msa0504020-mRNA-1:cds;Parent=Msa0504020-mRNA-1 |
| chr3_4 | CDS | 47916152 | 47916244 | 47916152 | ID=Msa0504020-mRNA-1:cds;Parent=Msa0504020-mRNA-1 |
| chr3_4 | CDS | 47917009 | 47917146 | 47917009 | ID=Msa0504020-mRNA-1:cds;Parent=Msa0504020-mRNA-1 |
| chr3_4 | CDS | 47917245 | 47917286 | 47917245 | ID=Msa0504020-mRNA-1:cds;Parent=Msa0504020-mRNA-1 |
| chr3_4 | three_prime_UTR | 47917287 | 47917431 | 47917287 | ID=Msa0504020-mRNA-1:three_prime_utr;Parent=Msa0504020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
