AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTAATTCTATATGTAATT+TGG 0.113702 2_4:-55438495 Msa0336160:three_prime_UTR
TCCATCCATGTTGCATTAAT+TGG 0.147680 2_4:+55438615 None:intergenic
TGAGGAACTCAAACAATTTA+AGG 0.163299 2_4:-55439452 Msa0336160:CDS
GTCCACAATCACATTTAAAT+TGG 0.209735 2_4:+55438902 None:intergenic
ATTATATATATCAATGTATT+TGG 0.214681 2_4:-55438401 Msa0336160:three_prime_UTR
TTGCGGGTCCATGGAGAATT+TGG 0.235128 2_4:-55442272 Msa0336160:five_prime_UTR
GTCAGGGTCGGCGCATTTCA+TGG 0.330478 2_4:-55442162 Msa0336160:five_prime_UTR
TCACATTTAAATTGGCCATT+TGG 0.332786 2_4:+55438910 None:intergenic
CTCCAACAATGTCAAATTGC+AGG 0.336874 2_4:-55439547 Msa0336160:five_prime_UTR
TTGATTATTTAAAATATAAT+CGG 0.338279 2_4:+55442430 None:intergenic
AGAGTACCTTTGATTGTGTC+AGG 0.339380 2_4:-55442179 Msa0336160:five_prime_UTR
GACCAAGCATTTGACATTGT+TGG 0.343423 2_4:+55439508 None:intergenic
GACAAGCAGTAAAAGTTTAT+CGG 0.363077 2_4:+55442202 None:intergenic
CAATGTCAAATTGCAGGCTT+GGG 0.366731 2_4:-55439541 Msa0336160:five_prime_UTR
CATAGTGACAATTACAGAAT+TGG 0.378131 2_4:+55438563 None:intergenic
CAATCTGTTTCAGCTTGAAT+AGG 0.382751 2_4:+55441828 None:intergenic
GAGGGAAAACCCTTGCAAAT+TGG 0.399141 2_4:+55442356 None:intergenic
ACAATGTCAAATGCTTGGTC+TGG 0.403543 2_4:-55439505 Msa0336160:CDS
AGCCTGCAATTTGACATTGT+TGG 0.403841 2_4:+55439545 None:intergenic
ACAATGTCAAATTGCAGGCT+TGG 0.414903 2_4:-55439542 Msa0336160:five_prime_UTR
AAATCCATAGCGTCTCTTGC+GGG 0.439000 2_4:-55442288 Msa0336160:five_prime_UTR
TTGCAAATTGGTCGATCTAC+AGG 0.455816 2_4:+55442368 None:intergenic
AGGTACAAATTTCCAATTGT+AGG 0.463626 2_4:-55438760 Msa0336160:CDS
AAATTGTTTGAGTTCCTCAA+TGG 0.471669 2_4:+55439456 None:intergenic
CTCCAACAATGTCAAATGCT+TGG 0.473618 2_4:-55439510 Msa0336160:exon
TCCTTGTTTGTGTTTGCTGC+CGG 0.474342 2_4:+55441763 None:intergenic
ACAAGCAGTAAAAGTTTATC+GGG 0.477726 2_4:+55442203 None:intergenic
CTATTCAAGCTGAAACAGAT+TGG 0.478401 2_4:-55441827 Msa0336160:five_prime_UTR
TAGTGGTTAATGAAATCTGA+TGG 0.484600 2_4:-55438678 Msa0336160:three_prime_UTR
CAATGTCAAATGCTTGGTCT+GGG 0.486270 2_4:-55439504 Msa0336160:CDS
TAGCGTCTCTTGCGGGTCCA+TGG 0.489160 2_4:-55442281 Msa0336160:five_prime_UTR
CAAGGTCCACCATGACTGTA+AGG 0.490493 2_4:+55442236 None:intergenic
ATGATTTGATAAAATTAACT+TGG 0.492727 2_4:+55438646 None:intergenic
AACTGAACGTTCGTGGGTAG+AGG 0.492865 2_4:+55442337 None:intergenic
CAAATCCATAGCGTCTCTTG+CGG 0.495008 2_4:-55442289 Msa0336160:five_prime_UTR
ATGAGAAAGAACATAAATAG+TGG 0.495321 2_4:-55438695 Msa0336160:three_prime_UTR
TTGCAAAACTTCTTCATGAC+CGG 0.497472 2_4:-55441782 Msa0336160:five_prime_UTR
GTTTCAGCTTGAATAGGAGA+TGG 0.499512 2_4:+55441834 None:intergenic
ATTTGAAAACTGAACGTTCG+TGG 0.501619 2_4:+55442330 None:intergenic
TATTCAAGCTGAAACAGATT+GGG 0.504544 2_4:-55441826 Msa0336160:five_prime_UTR
ATCAATAAATCTTACAAGGA+AGG 0.508095 2_4:-55442412 Msa0336160:five_prime_UTR
AATAATCAATAAATCTTACA+AGG 0.515045 2_4:-55442416 Msa0336160:five_prime_UTR
AATTTGACATTGTTGGAGAA+TGG 0.515371 2_4:+55439552 None:intergenic
AGGAAGGCTAAAACTCCAAA+TGG 0.517189 2_4:-55438925 Msa0336160:CDS
ACCTTTGATTGTGTCAGGGT+CGG 0.518796 2_4:-55442174 Msa0336160:five_prime_UTR
TCCAATTAATGCAACATGGA+TGG 0.520892 2_4:-55438616 Msa0336160:three_prime_UTR
CATTTGACATTGTTGGAGCA+TGG 0.525905 2_4:+55439515 None:intergenic
TAATGCAACATGGATGGACT+TGG 0.527685 2_4:-55438610 Msa0336160:three_prime_UTR
TATTAATGATGATTCCATTG+AGG 0.530317 2_4:-55439470 Msa0336160:CDS
GGCCAATTTAAATGTGATTG+TGG 0.541689 2_4:-55438904 Msa0336160:CDS
TTTCAGCTTGAATAGGAGAT+GGG 0.542088 2_4:+55441835 None:intergenic
CTCTGAAAATTGTAGGCTTG+GGG 0.549249 2_4:-55439577 Msa0336160:intron
TGGACCCGCAAGAGACGCTA+TGG 0.556214 2_4:+55442284 None:intergenic
CCATGGAGAATTTGGTGTCA+AGG 0.568407 2_4:-55442264 Msa0336160:five_prime_UTR
AACTCAAACAATTTAAGGAA+AGG 0.573878 2_4:-55439447 Msa0336160:intron
CCTTGACACCAAATTCTCCA+TGG 0.581548 2_4:+55442264 None:intergenic
AAGGCTTTACTGTTCTTCGA+AGG 0.582444 2_4:-55442393 Msa0336160:five_prime_UTR
AAGGTAGATCCTTACAGTCA+TGG 0.594677 2_4:-55442245 Msa0336160:five_prime_UTR
GCAGTAAAAGTTTATCGGGA+AGG 0.604212 2_4:+55442207 None:intergenic
AGTGGTTAATGAAATCTGAT+GGG 0.604425 2_4:-55438677 Msa0336160:three_prime_UTR
TTATCGGGAAGGAGCGAGCA+AGG 0.605530 2_4:+55442218 None:intergenic
ACTGAACGTTCGTGGGTAGA+GGG 0.607686 2_4:+55442338 None:intergenic
GTAGATCGACCAATTTGCAA+GGG 0.609149 2_4:-55442365 Msa0336160:five_prime_UTR
TGTAGATCGACCAATTTGCA+AGG 0.610342 2_4:-55442366 Msa0336160:five_prime_UTR
CAAGCTGAAACAGATTGGGT+AGG 0.611478 2_4:-55441822 Msa0336160:five_prime_UTR
TTTGAAAACTGAACGTTCGT+GGG 0.614441 2_4:+55442331 None:intergenic
GAGTACCTTTGATTGTGTCA+GGG 0.614624 2_4:-55442178 Msa0336160:five_prime_UTR
ACCGGCAGCAAACACAAACA+AGG 0.627964 2_4:-55441764 Msa0336160:five_prime_UTR
ACTCTCCAATTAATGCAACA+TGG 0.635926 2_4:-55438620 Msa0336160:three_prime_UTR
AATGTCAAATTGCAGGCTTG+GGG 0.640848 2_4:-55439540 Msa0336160:five_prime_UTR
ACAGCTGCACTAAATGCACC+AGG 0.652832 2_4:-55438945 Msa0336160:intron
CACTTCTGTCAATGAGACTG+TGG 0.662055 2_4:-55438586 Msa0336160:three_prime_UTR
CTGCACTAAATGCACCAGGA+AGG 0.665837 2_4:-55438941 Msa0336160:CDS
GCCGACCCTGACACAATCAA+AGG 0.682358 2_4:+55442173 None:intergenic
GTAGATCCTTACAGTCATGG+TGG 0.715962 2_4:-55442242 Msa0336160:five_prime_UTR
GGCAGCAAACACAAACAAGG+AGG 0.731272 2_4:-55441761 Msa0336160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCATGAATAAAAAAA+AGG + chr2_4:55439400-55439419 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG + chr2_4:55441367-55441386 None:intergenic 10.0%
!!! TTTTTTATTGATAAACTTAT+TGG - chr2_4:55442340-55442359 Msa0336160:five_prime_UTR 10.0%
!! ATTATATATATCAATGTATT+TGG - chr2_4:55442384-55442403 Msa0336160:five_prime_UTR 10.0%
!! AATATTCATGAATAAAAAAA+AGG + chr2_4:55439400-55439419 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG + chr2_4:55441367-55441386 None:intergenic 10.0%
!!! TTTTTTATTGATAAACTTAT+TGG - chr2_4:55442340-55442359 Msa0336160:five_prime_UTR 10.0%
!! ATTATATATATCAATGTATT+TGG - chr2_4:55442384-55442403 Msa0336160:five_prime_UTR 10.0%
!! AATAATCAATAAATCTTACA+AGG - chr2_4:55438369-55438388 Msa0336160:three_prime_UTR 15.0%
!! ATATATGTAAAATTGTTCTA+CGG - chr2_4:55440250-55440269 Msa0336160:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG - chr2_4:55440486-55440505 Msa0336160:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG + chr2_4:55440591-55440610 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG + chr2_4:55440698-55440717 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG + chr2_4:55441047-55441066 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG - chr2_4:55441046-55441065 Msa0336160:intron 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG - chr2_4:55441541-55441560 Msa0336160:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG + chr2_4:55441602-55441621 None:intergenic 15.0%
!! TTACTGTTATTATTATTACA+AGG - chr2_4:55441738-55441757 Msa0336160:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG + chr2_4:55442142-55442161 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG - chr2_4:55442290-55442309 Msa0336160:five_prime_UTR 15.0%
!! AATAATCAATAAATCTTACA+AGG - chr2_4:55438369-55438388 Msa0336160:three_prime_UTR 15.0%
!! ATATATGTAAAATTGTTCTA+CGG - chr2_4:55440250-55440269 Msa0336160:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG - chr2_4:55440486-55440505 Msa0336160:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG + chr2_4:55440591-55440610 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG + chr2_4:55440698-55440717 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG + chr2_4:55441047-55441066 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG - chr2_4:55441046-55441065 Msa0336160:intron 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG - chr2_4:55441541-55441560 Msa0336160:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG + chr2_4:55441602-55441621 None:intergenic 15.0%
!! TTACTGTTATTATTATTACA+AGG - chr2_4:55441738-55441757 Msa0336160:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG + chr2_4:55442142-55442161 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG - chr2_4:55442290-55442309 Msa0336160:five_prime_UTR 15.0%
!! ACTGACAAATTAAATAAACA+GGG + chr2_4:55438718-55438737 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG + chr2_4:55438719-55438738 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG - chr2_4:55438906-55438925 Msa0336160:CDS 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG + chr2_4:55439073-55439092 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG + chr2_4:55439074-55439093 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG - chr2_4:55439091-55439110 Msa0336160:intron 20.0%
!! TCATGAATAAAAAAAAGGAA+GGG + chr2_4:55439395-55439414 None:intergenic 20.0%
!! TTCATGAATAAAAAAAAGGA+AGG + chr2_4:55439396-55439415 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG + chr2_4:55439670-55439689 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG - chr2_4:55439698-55439717 Msa0336160:intron 20.0%
!! TACAAATATTTGCTTTACTT+TGG + chr2_4:55439751-55439770 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG - chr2_4:55439754-55439773 Msa0336160:intron 20.0%
!! AACGATGTAAATCAAAATAA+AGG + chr2_4:55439843-55439862 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG - chr2_4:55439844-55439863 Msa0336160:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG + chr2_4:55439973-55439992 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG - chr2_4:55440359-55440378 Msa0336160:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG + chr2_4:55440629-55440648 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG - chr2_4:55440901-55440920 Msa0336160:intron 20.0%
!!! ACAATTTTCAGAGTTTATAA+TGG + chr2_4:55441201-55441220 None:intergenic 20.0%
!!! TTATAAACTCTGAAAATTGT+AGG - chr2_4:55441201-55441220 Msa0336160:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG + chr2_4:55441543-55441562 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG - chr2_4:55441540-55441559 Msa0336160:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG + chr2_4:55441688-55441707 None:intergenic 20.0%
!! TGTTATTATTATTACAAGGT+TGG - chr2_4:55441742-55441761 Msa0336160:intron 20.0%
!!! CATGTATATTTTTTTACCTT+GGG + chr2_4:55441928-55441947 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG + chr2_4:55441929-55441948 None:intergenic 20.0%
!! ACTGACAAATTAAATAAACA+GGG + chr2_4:55438718-55438737 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG + chr2_4:55438719-55438738 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG - chr2_4:55438906-55438925 Msa0336160:CDS 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG + chr2_4:55439073-55439092 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG + chr2_4:55439074-55439093 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG - chr2_4:55439091-55439110 Msa0336160:intron 20.0%
!! TCATGAATAAAAAAAAGGAA+GGG + chr2_4:55439395-55439414 None:intergenic 20.0%
!! TTCATGAATAAAAAAAAGGA+AGG + chr2_4:55439396-55439415 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG + chr2_4:55439670-55439689 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG - chr2_4:55439698-55439717 Msa0336160:intron 20.0%
!! TACAAATATTTGCTTTACTT+TGG + chr2_4:55439751-55439770 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG - chr2_4:55439754-55439773 Msa0336160:intron 20.0%
!! AACGATGTAAATCAAAATAA+AGG + chr2_4:55439843-55439862 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG - chr2_4:55439844-55439863 Msa0336160:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG + chr2_4:55439973-55439992 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG - chr2_4:55440359-55440378 Msa0336160:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG + chr2_4:55440629-55440648 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG - chr2_4:55440901-55440920 Msa0336160:intron 20.0%
!!! ACAATTTTCAGAGTTTATAA+TGG + chr2_4:55441201-55441220 None:intergenic 20.0%
!!! TTATAAACTCTGAAAATTGT+AGG - chr2_4:55441201-55441220 Msa0336160:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG + chr2_4:55441543-55441562 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG - chr2_4:55441540-55441559 Msa0336160:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG + chr2_4:55441688-55441707 None:intergenic 20.0%
!! TGTTATTATTATTACAAGGT+TGG - chr2_4:55441742-55441761 Msa0336160:intron 20.0%
!!! CATGTATATTTTTTTACCTT+GGG + chr2_4:55441928-55441947 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG + chr2_4:55441929-55441948 None:intergenic 20.0%
! ATCAATAAATCTTACAAGGA+AGG - chr2_4:55438373-55438392 Msa0336160:three_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG + chr2_4:55438694-55438713 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG + chr2_4:55438717-55438736 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG + chr2_4:55438995-55439014 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG + chr2_4:55439126-55439145 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG - chr2_4:55439529-55439548 Msa0336160:five_prime_UTR 25.0%
! CAGATTTATTTGAAAAGAGA+GGG - chr2_4:55439530-55439549 Msa0336160:five_prime_UTR 25.0%
!!! AAGGAGTTGAAATTTTTTCA+TGG - chr2_4:55439717-55439736 Msa0336160:intron 25.0%
!!! AGGAGTTGAAATTTTTTCAT+GGG - chr2_4:55439718-55439737 Msa0336160:intron 25.0%
!! TGCTATTAGTATTTCTATCT+TGG - chr2_4:55440090-55440109 Msa0336160:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG - chr2_4:55440112-55440131 Msa0336160:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG - chr2_4:55440201-55440220 Msa0336160:intron 25.0%
!! CATATTTGTGAATTTTGAAC+TGG + chr2_4:55440761-55440780 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG + chr2_4:55440837-55440856 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG - chr2_4:55440932-55440951 Msa0336160:intron 25.0%
! ATAGTTTATACTAAACCTGA+GGG + chr2_4:55441153-55441172 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG + chr2_4:55441154-55441173 None:intergenic 25.0%
! GAGTTTATAATGGTTGTAAA+TGG + chr2_4:55441191-55441210 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG - chr2_4:55441315-55441334 Msa0336160:intron 25.0%
! AACTCAAACAATTTAAGGAA+AGG - chr2_4:55441338-55441357 Msa0336160:intron 25.0%
! AGACTTAGAATTGTGTTAAT+TGG - chr2_4:55441649-55441668 Msa0336160:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG + chr2_4:55442040-55442059 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG - chr2_4:55442090-55442109 Msa0336160:intron 25.0%
!! GTAATTGTCACTATGTTTTA+AGG - chr2_4:55442230-55442249 Msa0336160:five_prime_UTR 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG - chr2_4:55442241-55442260 Msa0336160:five_prime_UTR 25.0%
! ATCAATAAATCTTACAAGGA+AGG - chr2_4:55438373-55438392 Msa0336160:three_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG + chr2_4:55438694-55438713 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG + chr2_4:55438717-55438736 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG + chr2_4:55438995-55439014 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG + chr2_4:55439126-55439145 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG - chr2_4:55439529-55439548 Msa0336160:five_prime_UTR 25.0%
! CAGATTTATTTGAAAAGAGA+GGG - chr2_4:55439530-55439549 Msa0336160:five_prime_UTR 25.0%
!!! AAGGAGTTGAAATTTTTTCA+TGG - chr2_4:55439717-55439736 Msa0336160:intron 25.0%
!!! AGGAGTTGAAATTTTTTCAT+GGG - chr2_4:55439718-55439737 Msa0336160:intron 25.0%
!! TGCTATTAGTATTTCTATCT+TGG - chr2_4:55440090-55440109 Msa0336160:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG - chr2_4:55440112-55440131 Msa0336160:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG - chr2_4:55440201-55440220 Msa0336160:intron 25.0%
!! CATATTTGTGAATTTTGAAC+TGG + chr2_4:55440761-55440780 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG + chr2_4:55440837-55440856 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG - chr2_4:55440932-55440951 Msa0336160:intron 25.0%
! ATAGTTTATACTAAACCTGA+GGG + chr2_4:55441153-55441172 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG + chr2_4:55441154-55441173 None:intergenic 25.0%
! GAGTTTATAATGGTTGTAAA+TGG + chr2_4:55441191-55441210 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG - chr2_4:55441315-55441334 Msa0336160:intron 25.0%
! AACTCAAACAATTTAAGGAA+AGG - chr2_4:55441338-55441357 Msa0336160:intron 25.0%
! AGACTTAGAATTGTGTTAAT+TGG - chr2_4:55441649-55441668 Msa0336160:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG + chr2_4:55442040-55442059 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG - chr2_4:55442090-55442109 Msa0336160:intron 25.0%
!! GTAATTGTCACTATGTTTTA+AGG - chr2_4:55442230-55442249 Msa0336160:five_prime_UTR 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG - chr2_4:55442241-55442260 Msa0336160:five_prime_UTR 25.0%
! ACGTTCAGTTTTCAAATTGT+TGG - chr2_4:55438461-55438480 Msa0336160:three_prime_UTR 30.0%
ACAAGCAGTAAAAGTTTATC+GGG + chr2_4:55438585-55438604 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG + chr2_4:55438586-55438605 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG + chr2_4:55438713-55438732 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG + chr2_4:55438808-55438827 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG + chr2_4:55438809-55438828 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG - chr2_4:55438817-55438836 Msa0336160:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG - chr2_4:55438959-55438978 Msa0336160:intron 30.0%
CTTGCATGTTAGTTGAAATT+AGG + chr2_4:55439565-55439584 None:intergenic 30.0%
CTGAACACACTCATAATAAA+AGG + chr2_4:55440069-55440088 None:intergenic 30.0%
! TGACATAATAGTTTGGAACT+TGG - chr2_4:55440208-55440227 Msa0336160:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG - chr2_4:55440209-55440228 Msa0336160:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG - chr2_4:55440254-55440273 Msa0336160:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG - chr2_4:55440255-55440274 Msa0336160:intron 30.0%
GGCAATCTAGTACTATAAAA+CGG + chr2_4:55440418-55440437 None:intergenic 30.0%
CCAGAAGAATTTAACCTAAA+CGG + chr2_4:55440439-55440458 None:intergenic 30.0%
ACAGGGTATGAAATATAACA+AGG - chr2_4:55440539-55440558 Msa0336160:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG - chr2_4:55440710-55440729 Msa0336160:intron 30.0%
TGAAAACTTTCTTCTGATAC+AGG + chr2_4:55440931-55440950 None:intergenic 30.0%
! GGTGAATTTAGGACTAAATA+GGG - chr2_4:55441081-55441100 Msa0336160:five_prime_UTR 30.0%
! GTGAATTTAGGACTAAATAG+GGG - chr2_4:55441082-55441101 Msa0336160:five_prime_UTR 30.0%
AATTTGACATTGTTGGAGAA+TGG + chr2_4:55441236-55441255 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG + chr2_4:55441332-55441351 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG - chr2_4:55441333-55441352 Msa0336160:intron 30.0%
! ACAAGCATCACAATTTTCAA+AGG - chr2_4:55441448-55441467 Msa0336160:intron 30.0%
TCACATTTAAATTGGCCATT+TGG + chr2_4:55441878-55441897 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG + chr2_4:55441886-55441905 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG - chr2_4:55441940-55441959 Msa0336160:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG - chr2_4:55441985-55442004 Msa0336160:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG - chr2_4:55442025-55442044 Msa0336160:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG - chr2_4:55442042-55442061 Msa0336160:intron 30.0%
TAGTGGTTAATGAAATCTGA+TGG - chr2_4:55442107-55442126 Msa0336160:intron 30.0%
AGTGGTTAATGAAATCTGAT+GGG - chr2_4:55442108-55442127 Msa0336160:intron 30.0%
CATAGTGACAATTACAGAAT+TGG + chr2_4:55442225-55442244 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG - chr2_4:55442240-55442259 Msa0336160:five_prime_UTR 30.0%
! ACGTTCAGTTTTCAAATTGT+TGG - chr2_4:55438461-55438480 Msa0336160:three_prime_UTR 30.0%
ACAAGCAGTAAAAGTTTATC+GGG + chr2_4:55438585-55438604 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG + chr2_4:55438586-55438605 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG + chr2_4:55438713-55438732 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG + chr2_4:55438808-55438827 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG + chr2_4:55438809-55438828 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG - chr2_4:55438817-55438836 Msa0336160:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG - chr2_4:55438959-55438978 Msa0336160:intron 30.0%
CTTGCATGTTAGTTGAAATT+AGG + chr2_4:55439565-55439584 None:intergenic 30.0%
CTGAACACACTCATAATAAA+AGG + chr2_4:55440069-55440088 None:intergenic 30.0%
! TGACATAATAGTTTGGAACT+TGG - chr2_4:55440208-55440227 Msa0336160:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG - chr2_4:55440209-55440228 Msa0336160:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG - chr2_4:55440254-55440273 Msa0336160:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG - chr2_4:55440255-55440274 Msa0336160:intron 30.0%
GGCAATCTAGTACTATAAAA+CGG + chr2_4:55440418-55440437 None:intergenic 30.0%
CCAGAAGAATTTAACCTAAA+CGG + chr2_4:55440439-55440458 None:intergenic 30.0%
ACAGGGTATGAAATATAACA+AGG - chr2_4:55440539-55440558 Msa0336160:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG - chr2_4:55440710-55440729 Msa0336160:intron 30.0%
TGAAAACTTTCTTCTGATAC+AGG + chr2_4:55440931-55440950 None:intergenic 30.0%
! GGTGAATTTAGGACTAAATA+GGG - chr2_4:55441081-55441100 Msa0336160:five_prime_UTR 30.0%
! GTGAATTTAGGACTAAATAG+GGG - chr2_4:55441082-55441101 Msa0336160:five_prime_UTR 30.0%
AATTTGACATTGTTGGAGAA+TGG + chr2_4:55441236-55441255 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG + chr2_4:55441332-55441351 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG - chr2_4:55441333-55441352 Msa0336160:intron 30.0%
! ACAAGCATCACAATTTTCAA+AGG - chr2_4:55441448-55441467 Msa0336160:intron 30.0%
TCACATTTAAATTGGCCATT+TGG + chr2_4:55441878-55441897 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG + chr2_4:55441886-55441905 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG - chr2_4:55441940-55441959 Msa0336160:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG - chr2_4:55441985-55442004 Msa0336160:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG - chr2_4:55442025-55442044 Msa0336160:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG - chr2_4:55442042-55442061 Msa0336160:intron 30.0%
TAGTGGTTAATGAAATCTGA+TGG - chr2_4:55442107-55442126 Msa0336160:intron 30.0%
AGTGGTTAATGAAATCTGAT+GGG - chr2_4:55442108-55442127 Msa0336160:intron 30.0%
CATAGTGACAATTACAGAAT+TGG + chr2_4:55442225-55442244 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG - chr2_4:55442240-55442259 Msa0336160:five_prime_UTR 30.0%
TTTGAAAACTGAACGTTCGT+GGG + chr2_4:55438457-55438476 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG + chr2_4:55438458-55438477 None:intergenic 35.0%
! CTGCATTATTTCTTGCTTGT+GGG - chr2_4:55438664-55438683 Msa0336160:three_prime_UTR 35.0%
! TGCATTATTTCTTGCTTGTG+GGG - chr2_4:55438665-55438684 Msa0336160:three_prime_UTR 35.0%
AATCGCTTGATTCTTTGTTC+TGG - chr2_4:55438846-55438865 Msa0336160:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG - chr2_4:55438847-55438866 Msa0336160:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG - chr2_4:55438852-55438871 Msa0336160:intron 35.0%
TTTCAGCTTGAATAGGAGAT+GGG + chr2_4:55438953-55438972 None:intergenic 35.0%
CAATCTGTTTCAGCTTGAAT+AGG + chr2_4:55438960-55438979 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG - chr2_4:55438958-55438977 Msa0336160:intron 35.0%
TTGCAAAACTTCTTCATGAC+CGG - chr2_4:55439003-55439022 Msa0336160:intron 35.0%
TTAAGGGAATGAGACAAAGA+CGG + chr2_4:55439057-55439076 None:intergenic 35.0%
ATTTACCAATCTATGTGTGC+AGG + chr2_4:55439478-55439497 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG - chr2_4:55439852-55439871 Msa0336160:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG - chr2_4:55440015-55440034 Msa0336160:intron 35.0%
ATGGTTGAAGTTGCTATCAT+TGG - chr2_4:55440292-55440311 Msa0336160:intron 35.0%
TTAGTAGCAGGTTAATTCAG+TGG + chr2_4:55440324-55440343 None:intergenic 35.0%
ATTAACCTGCTACTAATGCT+TGG - chr2_4:55440328-55440347 Msa0336160:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG - chr2_4:55440422-55440441 Msa0336160:intron 35.0%
! CCGTTTAGGTTAAATTCTTC+TGG - chr2_4:55440436-55440455 Msa0336160:intron 35.0%
!! TTCTGGAACGACAATAGATA+TGG - chr2_4:55440453-55440472 Msa0336160:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG - chr2_4:55440504-55440523 Msa0336160:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG + chr2_4:55440516-55440535 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG - chr2_4:55440521-55440540 Msa0336160:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG - chr2_4:55440522-55440541 Msa0336160:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG + chr2_4:55440752-55440771 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG + chr2_4:55440753-55440772 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG + chr2_4:55440815-55440834 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG + chr2_4:55440824-55440843 None:intergenic 35.0%
TTATTGCACATCACATGAAG+TGG - chr2_4:55440849-55440868 Msa0336160:intron 35.0%
!! TTTTCATTGGTGCTCATAAG+AGG - chr2_4:55440945-55440964 Msa0336160:intron 35.0%
! TTTCATTGGTGCTCATAAGA+GGG - chr2_4:55440946-55440965 Msa0336160:intron 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG - chr2_4:55441059-55441078 Msa0336160:five_prime_UTR 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG - chr2_4:55441060-55441079 Msa0336160:five_prime_UTR 35.0%
! GGGTGAATTTAGGACTAAAT+AGG - chr2_4:55441080-55441099 Msa0336160:five_prime_UTR 35.0%
! AACTCTGAAAATTGTAGGCT+TGG - chr2_4:55441206-55441225 Msa0336160:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG - chr2_4:55441207-55441226 Msa0336160:intron 35.0%
CAAACAACAGCTTCAATAAC+AGG + chr2_4:55441477-55441496 None:intergenic 35.0%
! TTGAAGCTGTTGTTTGTGAA+AGG - chr2_4:55441481-55441500 Msa0336160:intron 35.0%
CATCATGACTGAACTTTACA+AGG - chr2_4:55441796-55441815 Msa0336160:five_prime_UTR 35.0%
GAACTTTACAAGGTCATTCA+CGG - chr2_4:55441806-55441825 Msa0336160:five_prime_UTR 35.0%
GGCCAATTTAAATGTGATTG+TGG - chr2_4:55441881-55441900 Msa0336160:intron 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG - chr2_4:55441898-55441917 Msa0336160:intron 35.0%
TGTGCTTATGGATATCATGA+TGG - chr2_4:55441952-55441971 Msa0336160:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG - chr2_4:55442005-55442024 Msa0336160:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG - chr2_4:55442165-55442184 Msa0336160:five_prime_UTR 35.0%
TCCAATTAATGCAACATGGA+TGG - chr2_4:55442169-55442188 Msa0336160:five_prime_UTR 35.0%
TCCATCCATGTTGCATTAAT+TGG + chr2_4:55442173-55442192 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG - chr2_4:55442361-55442380 Msa0336160:five_prime_UTR 35.0%
TTTGAAAACTGAACGTTCGT+GGG + chr2_4:55438457-55438476 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG + chr2_4:55438458-55438477 None:intergenic 35.0%
! CTGCATTATTTCTTGCTTGT+GGG - chr2_4:55438664-55438683 Msa0336160:three_prime_UTR 35.0%
! TGCATTATTTCTTGCTTGTG+GGG - chr2_4:55438665-55438684 Msa0336160:three_prime_UTR 35.0%
AATCGCTTGATTCTTTGTTC+TGG - chr2_4:55438846-55438865 Msa0336160:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG - chr2_4:55438847-55438866 Msa0336160:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG - chr2_4:55438852-55438871 Msa0336160:intron 35.0%
TTTCAGCTTGAATAGGAGAT+GGG + chr2_4:55438953-55438972 None:intergenic 35.0%
CAATCTGTTTCAGCTTGAAT+AGG + chr2_4:55438960-55438979 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG - chr2_4:55438958-55438977 Msa0336160:intron 35.0%
TTGCAAAACTTCTTCATGAC+CGG - chr2_4:55439003-55439022 Msa0336160:intron 35.0%
TTAAGGGAATGAGACAAAGA+CGG + chr2_4:55439057-55439076 None:intergenic 35.0%
ATTTACCAATCTATGTGTGC+AGG + chr2_4:55439478-55439497 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG - chr2_4:55439852-55439871 Msa0336160:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG - chr2_4:55440015-55440034 Msa0336160:intron 35.0%
ATGGTTGAAGTTGCTATCAT+TGG - chr2_4:55440292-55440311 Msa0336160:intron 35.0%
TTAGTAGCAGGTTAATTCAG+TGG + chr2_4:55440324-55440343 None:intergenic 35.0%
ATTAACCTGCTACTAATGCT+TGG - chr2_4:55440328-55440347 Msa0336160:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG - chr2_4:55440422-55440441 Msa0336160:intron 35.0%
! CCGTTTAGGTTAAATTCTTC+TGG - chr2_4:55440436-55440455 Msa0336160:intron 35.0%
!! TTCTGGAACGACAATAGATA+TGG - chr2_4:55440453-55440472 Msa0336160:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG - chr2_4:55440504-55440523 Msa0336160:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG + chr2_4:55440516-55440535 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG - chr2_4:55440521-55440540 Msa0336160:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG - chr2_4:55440522-55440541 Msa0336160:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG + chr2_4:55440752-55440771 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG + chr2_4:55440753-55440772 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG + chr2_4:55440815-55440834 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG + chr2_4:55440824-55440843 None:intergenic 35.0%
TTATTGCACATCACATGAAG+TGG - chr2_4:55440849-55440868 Msa0336160:intron 35.0%
!! TTTTCATTGGTGCTCATAAG+AGG - chr2_4:55440945-55440964 Msa0336160:intron 35.0%
! TTTCATTGGTGCTCATAAGA+GGG - chr2_4:55440946-55440965 Msa0336160:intron 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG - chr2_4:55441059-55441078 Msa0336160:five_prime_UTR 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG - chr2_4:55441060-55441079 Msa0336160:five_prime_UTR 35.0%
! GGGTGAATTTAGGACTAAAT+AGG - chr2_4:55441080-55441099 Msa0336160:five_prime_UTR 35.0%
! AACTCTGAAAATTGTAGGCT+TGG - chr2_4:55441206-55441225 Msa0336160:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG - chr2_4:55441207-55441226 Msa0336160:intron 35.0%
CAAACAACAGCTTCAATAAC+AGG + chr2_4:55441477-55441496 None:intergenic 35.0%
! TTGAAGCTGTTGTTTGTGAA+AGG - chr2_4:55441481-55441500 Msa0336160:intron 35.0%
CATCATGACTGAACTTTACA+AGG - chr2_4:55441796-55441815 Msa0336160:five_prime_UTR 35.0%
GAACTTTACAAGGTCATTCA+CGG - chr2_4:55441806-55441825 Msa0336160:five_prime_UTR 35.0%
GGCCAATTTAAATGTGATTG+TGG - chr2_4:55441881-55441900 Msa0336160:intron 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG - chr2_4:55441898-55441917 Msa0336160:intron 35.0%
TGTGCTTATGGATATCATGA+TGG - chr2_4:55441952-55441971 Msa0336160:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG - chr2_4:55442005-55442024 Msa0336160:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG - chr2_4:55442165-55442184 Msa0336160:five_prime_UTR 35.0%
TCCAATTAATGCAACATGGA+TGG - chr2_4:55442169-55442188 Msa0336160:five_prime_UTR 35.0%
TCCATCCATGTTGCATTAAT+TGG + chr2_4:55442173-55442192 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG - chr2_4:55442361-55442380 Msa0336160:five_prime_UTR 35.0%
AAGGCTTTACTGTTCTTCGA+AGG - chr2_4:55438392-55438411 Msa0336160:three_prime_UTR 40.0%
TTGCAAATTGGTCGATCTAC+AGG + chr2_4:55438420-55438439 None:intergenic 40.0%
TGTAGATCGACCAATTTGCA+AGG - chr2_4:55438419-55438438 Msa0336160:three_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG - chr2_4:55438420-55438439 Msa0336160:three_prime_UTR 40.0%
AAGGTAGATCCTTACAGTCA+TGG - chr2_4:55438540-55438559 Msa0336160:three_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG + chr2_4:55438581-55438600 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG - chr2_4:55438606-55438625 Msa0336160:three_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG - chr2_4:55438607-55438626 Msa0336160:three_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG - chr2_4:55438663-55438682 Msa0336160:three_prime_UTR 40.0%
TTGTCAGTAGCAGTTATGTG+TGG - chr2_4:55438730-55438749 Msa0336160:exon 40.0%
GTTTCAGCTTGAATAGGAGA+TGG + chr2_4:55438954-55438973 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG + chr2_4:55439363-55439382 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG - chr2_4:55439362-55439381 Msa0336160:intron 40.0%
CAATCTATGTGTGCAGGATA+CGG + chr2_4:55439472-55439491 None:intergenic 40.0%
AAGCAATAAGCAGAGAAGTG+TGG + chr2_4:55439640-55439659 None:intergenic 40.0%
GTGAACTCCTTGAACATTTC+CGG + chr2_4:55440014-55440033 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG - chr2_4:55440258-55440277 Msa0336160:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG + chr2_4:55440378-55440397 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG + chr2_4:55440405-55440424 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG - chr2_4:55440511-55440530 Msa0336160:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG + chr2_4:55440723-55440742 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG - chr2_4:55440871-55440890 Msa0336160:intron 40.0%
AGGGTGAATTTCACATGAAG+TGG - chr2_4:55440965-55440984 Msa0336160:intron 40.0%
GTTTATACTAAACCTGAGGG+TGG + chr2_4:55441150-55441169 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG - chr2_4:55441208-55441227 Msa0336160:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG - chr2_4:55441238-55441257 Msa0336160:intron 40.0%
AGCCTGCAATTTGACATTGT+TGG + chr2_4:55441243-55441262 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG - chr2_4:55441243-55441262 Msa0336160:intron 40.0%
CAATGTCAAATTGCAGGCTT+GGG - chr2_4:55441244-55441263 Msa0336160:intron 40.0%
AATGTCAAATTGCAGGCTTG+GGG - chr2_4:55441245-55441264 Msa0336160:intron 40.0%
CATTTGACATTGTTGGAGCA+TGG + chr2_4:55441273-55441292 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG - chr2_4:55441275-55441294 Msa0336160:intron 40.0%
GACCAAGCATTTGACATTGT+TGG + chr2_4:55441280-55441299 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG - chr2_4:55441280-55441299 Msa0336160:intron 40.0%
CAATGTCAAATGCTTGGTCT+GGG - chr2_4:55441281-55441300 Msa0336160:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG - chr2_4:55441576-55441595 Msa0336160:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG - chr2_4:55441810-55441829 Msa0336160:five_prime_UTR 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG + chr2_4:55441861-55441880 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG - chr2_4:55441860-55441879 Msa0336160:five_prime_UTR 40.0%
! TTTTTGAACAGGCAATCCCA+AGG - chr2_4:55441909-55441928 Msa0336160:intron 40.0%
! TAATGCAACATGGATGGACT+TGG - chr2_4:55442175-55442194 Msa0336160:five_prime_UTR 40.0%
AAGGCTTTACTGTTCTTCGA+AGG - chr2_4:55438392-55438411 Msa0336160:three_prime_UTR 40.0%
TTGCAAATTGGTCGATCTAC+AGG + chr2_4:55438420-55438439 None:intergenic 40.0%
TGTAGATCGACCAATTTGCA+AGG - chr2_4:55438419-55438438 Msa0336160:three_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG - chr2_4:55438420-55438439 Msa0336160:three_prime_UTR 40.0%
AAGGTAGATCCTTACAGTCA+TGG - chr2_4:55438540-55438559 Msa0336160:three_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG + chr2_4:55438581-55438600 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG - chr2_4:55438606-55438625 Msa0336160:three_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG - chr2_4:55438607-55438626 Msa0336160:three_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG - chr2_4:55438663-55438682 Msa0336160:three_prime_UTR 40.0%
TTGTCAGTAGCAGTTATGTG+TGG - chr2_4:55438730-55438749 Msa0336160:exon 40.0%
GTTTCAGCTTGAATAGGAGA+TGG + chr2_4:55438954-55438973 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG + chr2_4:55439363-55439382 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG - chr2_4:55439362-55439381 Msa0336160:intron 40.0%
CAATCTATGTGTGCAGGATA+CGG + chr2_4:55439472-55439491 None:intergenic 40.0%
AAGCAATAAGCAGAGAAGTG+TGG + chr2_4:55439640-55439659 None:intergenic 40.0%
GTGAACTCCTTGAACATTTC+CGG + chr2_4:55440014-55440033 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG - chr2_4:55440258-55440277 Msa0336160:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG + chr2_4:55440378-55440397 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG + chr2_4:55440405-55440424 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG - chr2_4:55440511-55440530 Msa0336160:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG + chr2_4:55440723-55440742 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG - chr2_4:55440871-55440890 Msa0336160:intron 40.0%
AGGGTGAATTTCACATGAAG+TGG - chr2_4:55440965-55440984 Msa0336160:intron 40.0%
GTTTATACTAAACCTGAGGG+TGG + chr2_4:55441150-55441169 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG - chr2_4:55441208-55441227 Msa0336160:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG - chr2_4:55441238-55441257 Msa0336160:intron 40.0%
AGCCTGCAATTTGACATTGT+TGG + chr2_4:55441243-55441262 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG - chr2_4:55441243-55441262 Msa0336160:intron 40.0%
CAATGTCAAATTGCAGGCTT+GGG - chr2_4:55441244-55441263 Msa0336160:intron 40.0%
AATGTCAAATTGCAGGCTTG+GGG - chr2_4:55441245-55441264 Msa0336160:intron 40.0%
CATTTGACATTGTTGGAGCA+TGG + chr2_4:55441273-55441292 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG - chr2_4:55441275-55441294 Msa0336160:intron 40.0%
GACCAAGCATTTGACATTGT+TGG + chr2_4:55441280-55441299 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG - chr2_4:55441280-55441299 Msa0336160:intron 40.0%
CAATGTCAAATGCTTGGTCT+GGG - chr2_4:55441281-55441300 Msa0336160:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG - chr2_4:55441576-55441595 Msa0336160:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG - chr2_4:55441810-55441829 Msa0336160:five_prime_UTR 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG + chr2_4:55441861-55441880 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG - chr2_4:55441860-55441879 Msa0336160:five_prime_UTR 40.0%
! TTTTTGAACAGGCAATCCCA+AGG - chr2_4:55441909-55441928 Msa0336160:intron 40.0%
! TAATGCAACATGGATGGACT+TGG - chr2_4:55442175-55442194 Msa0336160:five_prime_UTR 40.0%
GAGGGAAAACCCTTGCAAAT+TGG + chr2_4:55438432-55438451 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG - chr2_4:55438496-55438515 Msa0336160:three_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG - chr2_4:55438497-55438516 Msa0336160:three_prime_UTR 45.0%
CCTTGACACCAAATTCTCCA+TGG + chr2_4:55438524-55438543 None:intergenic 45.0%
!! CCATGGAGAATTTGGTGTCA+AGG - chr2_4:55438521-55438540 Msa0336160:three_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG - chr2_4:55438543-55438562 Msa0336160:three_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG - chr2_4:55438611-55438630 Msa0336160:three_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG - chr2_4:55438963-55438982 Msa0336160:intron 45.0%
! TCCTTGTTTGTGTTTGCTGC+CGG + chr2_4:55439025-55439044 None:intergenic 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG + chr2_4:55439383-55439402 None:intergenic 45.0%
!! CAGGATACGGATTGGTCTTA+TGG + chr2_4:55439459-55439478 None:intergenic 45.0%
TATGTGTGCAGGATACGGAT+TGG + chr2_4:55439467-55439486 None:intergenic 45.0%
CGTATCCTGCACACATAGAT+TGG - chr2_4:55439470-55439489 Msa0336160:CDS 45.0%
CTAGTCGTCTACATCACCAT+AGG + chr2_4:55439871-55439890 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG + chr2_4:55440004-55440023 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG - chr2_4:55440004-55440023 Msa0336160:intron 45.0%
AAGGGAGGAAAGTGGCATAA+TGG - chr2_4:55440273-55440292 Msa0336160:intron 45.0%
TCTCACCAAGCATTAGTAGC+AGG + chr2_4:55440336-55440355 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG + chr2_4:55440391-55440410 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG + chr2_4:55440392-55440411 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG + chr2_4:55440406-55440425 None:intergenic 45.0%
GGAGAACTAAGCCTAACTAG+AGG - chr2_4:55440870-55440889 Msa0336160:intron 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG + chr2_4:55440884-55440903 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG - chr2_4:55441070-55441089 Msa0336160:five_prime_UTR 45.0%
GCTAAAATTAAGCCACCCTC+AGG - chr2_4:55441135-55441154 Msa0336160:intron 45.0%
! AGCTGTTGTTTGTGAAAGGC+AGG - chr2_4:55441485-55441504 Msa0336160:intron 45.0%
CACTTCTGTCAATGAGACTG+TGG - chr2_4:55442199-55442218 Msa0336160:five_prime_UTR 45.0%
GAGGGAAAACCCTTGCAAAT+TGG + chr2_4:55438432-55438451 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG - chr2_4:55438496-55438515 Msa0336160:three_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG - chr2_4:55438497-55438516 Msa0336160:three_prime_UTR 45.0%
CCTTGACACCAAATTCTCCA+TGG + chr2_4:55438524-55438543 None:intergenic 45.0%
!! CCATGGAGAATTTGGTGTCA+AGG - chr2_4:55438521-55438540 Msa0336160:three_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG - chr2_4:55438543-55438562 Msa0336160:three_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG - chr2_4:55438611-55438630 Msa0336160:three_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG - chr2_4:55438963-55438982 Msa0336160:intron 45.0%
! TCCTTGTTTGTGTTTGCTGC+CGG + chr2_4:55439025-55439044 None:intergenic 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG + chr2_4:55439383-55439402 None:intergenic 45.0%
!! CAGGATACGGATTGGTCTTA+TGG + chr2_4:55439459-55439478 None:intergenic 45.0%
TATGTGTGCAGGATACGGAT+TGG + chr2_4:55439467-55439486 None:intergenic 45.0%
CGTATCCTGCACACATAGAT+TGG - chr2_4:55439470-55439489 Msa0336160:CDS 45.0%
CTAGTCGTCTACATCACCAT+AGG + chr2_4:55439871-55439890 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG + chr2_4:55440004-55440023 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG - chr2_4:55440004-55440023 Msa0336160:intron 45.0%
AAGGGAGGAAAGTGGCATAA+TGG - chr2_4:55440273-55440292 Msa0336160:intron 45.0%
TCTCACCAAGCATTAGTAGC+AGG + chr2_4:55440336-55440355 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG + chr2_4:55440391-55440410 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG + chr2_4:55440392-55440411 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG + chr2_4:55440406-55440425 None:intergenic 45.0%
GGAGAACTAAGCCTAACTAG+AGG - chr2_4:55440870-55440889 Msa0336160:intron 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG + chr2_4:55440884-55440903 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG - chr2_4:55441070-55441089 Msa0336160:five_prime_UTR 45.0%
GCTAAAATTAAGCCACCCTC+AGG - chr2_4:55441135-55441154 Msa0336160:intron 45.0%
! AGCTGTTGTTTGTGAAAGGC+AGG - chr2_4:55441485-55441504 Msa0336160:intron 45.0%
CACTTCTGTCAATGAGACTG+TGG - chr2_4:55442199-55442218 Msa0336160:five_prime_UTR 45.0%
ACTGAACGTTCGTGGGTAGA+GGG + chr2_4:55438450-55438469 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG + chr2_4:55438451-55438470 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG - chr2_4:55438513-55438532 Msa0336160:three_prime_UTR 50.0%
CAAGGTCCACCATGACTGTA+AGG + chr2_4:55438552-55438571 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG + chr2_4:55438779-55438798 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG + chr2_4:55438796-55438815 None:intergenic 50.0%
ACCGGCAGCAAACACAAACA+AGG - chr2_4:55439021-55439040 Msa0336160:intron 50.0%
GGCAGCAAACACAAACAAGG+AGG - chr2_4:55439024-55439043 Msa0336160:intron 50.0%
TTCTACGGAAGGGAGGAAAG+TGG - chr2_4:55440265-55440284 Msa0336160:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG - chr2_4:55440879-55440898 Msa0336160:intron 50.0%
ACAGCTGCACTAAATGCACC+AGG - chr2_4:55441840-55441859 Msa0336160:five_prime_UTR 50.0%
CTGCACTAAATGCACCAGGA+AGG - chr2_4:55441844-55441863 Msa0336160:five_prime_UTR 50.0%
ACTGAACGTTCGTGGGTAGA+GGG + chr2_4:55438450-55438469 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG + chr2_4:55438451-55438470 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG - chr2_4:55438513-55438532 Msa0336160:three_prime_UTR 50.0%
CAAGGTCCACCATGACTGTA+AGG + chr2_4:55438552-55438571 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG + chr2_4:55438779-55438798 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG + chr2_4:55438796-55438815 None:intergenic 50.0%
ACCGGCAGCAAACACAAACA+AGG - chr2_4:55439021-55439040 Msa0336160:intron 50.0%
GGCAGCAAACACAAACAAGG+AGG - chr2_4:55439024-55439043 Msa0336160:intron 50.0%
TTCTACGGAAGGGAGGAAAG+TGG - chr2_4:55440265-55440284 Msa0336160:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG - chr2_4:55440879-55440898 Msa0336160:intron 50.0%
ACAGCTGCACTAAATGCACC+AGG - chr2_4:55441840-55441859 Msa0336160:five_prime_UTR 50.0%
CTGCACTAAATGCACCAGGA+AGG - chr2_4:55441844-55441863 Msa0336160:five_prime_UTR 50.0%
TTATCGGGAAGGAGCGAGCA+AGG + chr2_4:55438570-55438589 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG + chr2_4:55438615-55438634 None:intergenic 55.0%
GCAGAGCAACCTTAGTGCAC+CGG - chr2_4:55439992-55440011 Msa0336160:intron 55.0%
GAGAACCAAGCCTCGCTAGA+GGG - chr2_4:55440987-55441006 Msa0336160:intron 55.0%
TTATCGGGAAGGAGCGAGCA+AGG + chr2_4:55438570-55438589 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG + chr2_4:55438615-55438634 None:intergenic 55.0%
GCAGAGCAACCTTAGTGCAC+CGG - chr2_4:55439992-55440011 Msa0336160:intron 55.0%
GAGAACCAAGCCTCGCTAGA+GGG - chr2_4:55440987-55441006 Msa0336160:intron 55.0%
TGGACCCGCAAGAGACGCTA+TGG + chr2_4:55438504-55438523 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG - chr2_4:55438504-55438523 Msa0336160:three_prime_UTR 60.0%
GTCAGGGTCGGCGCATTTCA+TGG - chr2_4:55438623-55438642 Msa0336160:three_prime_UTR 60.0%
GGAGAACCAAGCCTCGCTAG+AGG - chr2_4:55440986-55441005 Msa0336160:intron 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG + chr2_4:55440995-55441014 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG - chr2_4:55440995-55441014 Msa0336160:intron 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG + chr2_4:55441000-55441019 None:intergenic 60.0%
TGGACCCGCAAGAGACGCTA+TGG + chr2_4:55438504-55438523 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG - chr2_4:55438504-55438523 Msa0336160:three_prime_UTR 60.0%
GTCAGGGTCGGCGCATTTCA+TGG - chr2_4:55438623-55438642 Msa0336160:three_prime_UTR 60.0%
GGAGAACCAAGCCTCGCTAG+AGG - chr2_4:55440986-55441005 Msa0336160:intron 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG + chr2_4:55440995-55441014 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG - chr2_4:55440995-55441014 Msa0336160:intron 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG + chr2_4:55441000-55441019 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55438358 55442449 55438358 ID=Msa0336160;Name=Msa0336160
chr2_4 mRNA 55438358 55442449 55438358 ID=Msa0336160-mRNA-1;Parent=Msa0336160;Name=Msa0336160-mRNA-1;_AED=0.33;_eAED=0.37;_QI=537|0.6|0.83|1|0.4|0.66|6|386|66
chr2_4 exon 55438358 55438780 55438358 ID=Msa0336160-mRNA-1:exon:16824;Parent=Msa0336160-mRNA-1
chr2_4 exon 55438877 55438963 55438877 ID=Msa0336160-mRNA-1:exon:16823;Parent=Msa0336160-mRNA-1
chr2_4 exon 55439448 55439584 55439448 ID=Msa0336160-mRNA-1:exon:16822;Parent=Msa0336160-mRNA-1
chr2_4 exon 55441055 55441118 55441055 ID=Msa0336160-mRNA-1:exon:16821;Parent=Msa0336160-mRNA-1
chr2_4 exon 55441762 55441879 55441762 ID=Msa0336160-mRNA-1:exon:16820;Parent=Msa0336160-mRNA-1
chr2_4 exon 55442155 55442449 55442155 ID=Msa0336160-mRNA-1:exon:16819;Parent=Msa0336160-mRNA-1
chr2_4 five_prime_UTR 55442155 55442449 55442155 ID=Msa0336160-mRNA-1:five_prime_utr;Parent=Msa0336160-mRNA-1
chr2_4 five_prime_UTR 55441762 55441879 55441762 ID=Msa0336160-mRNA-1:five_prime_utr;Parent=Msa0336160-mRNA-1
chr2_4 five_prime_UTR 55441055 55441118 55441055 ID=Msa0336160-mRNA-1:five_prime_utr;Parent=Msa0336160-mRNA-1
chr2_4 five_prime_UTR 55439525 55439584 55439525 ID=Msa0336160-mRNA-1:five_prime_utr;Parent=Msa0336160-mRNA-1
chr2_4 CDS 55439448 55439524 55439448 ID=Msa0336160-mRNA-1:cds;Parent=Msa0336160-mRNA-1
chr2_4 CDS 55438877 55438963 55438877 ID=Msa0336160-mRNA-1:cds;Parent=Msa0336160-mRNA-1
chr2_4 CDS 55438744 55438780 55438744 ID=Msa0336160-mRNA-1:cds;Parent=Msa0336160-mRNA-1
chr2_4 three_prime_UTR 55438358 55438743 55438358 ID=Msa0336160-mRNA-1:three_prime_utr;Parent=Msa0336160-mRNA-1
Gene Sequence

>Msa0336160

ATGTCAAATGCTTGGTCTGGGTCTAAACTGTTTATTAATGATGATTCCATTGAGGAACTCAAACAATTTAAGGAAAGCTGCACTAAATGCACCAGGAAGGCTAAAACTCCAAATGGCCAATTTAAATGTGATTGTGGACAAGTTTTTGAACAGGCAATCCCAAGGTACAAATTTCCAATTGTAGGTCTTTTTATCAAGTAG
Protein sequence

>Msa0336160

MSNAWSGSKLFINDDSIEELKQFKESCTKCTRKAKTPNGQFKCDCGQVFEQAIPRYKFPIVGLFIK*