AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTAATTCTATATGTAATT+TGG 0.113702 6_4:+27954326 Msa0984140:three_prime_UTR
TCCATCCATGTTGCATTAAT+TGG 0.147680 6_4:-27954206 None:intergenic
TGAGGAACTCAAACAATTTA+AGG 0.163299 6_4:+27953366 Msa0984140:CDS
GTCCACAATCACATTTAAAT+TGG 0.209735 6_4:-27953919 None:intergenic
ATTATATATATCAATGTATT+TGG 0.214681 6_4:+27954420 Msa0984140:three_prime_UTR
TTGCGGGTCCATGGAGAATT+TGG 0.235128 6_4:+27950547 Msa0984140:five_prime_UTR
GTCAGGGTCGGCGCGTTTCA+TGG 0.308268 6_4:+27950657 Msa0984140:five_prime_UTR
TCCTTGTTTGTGTTTGTTGC+CGG 0.322987 6_4:-27951056 None:intergenic
TCACATTTAAATTGGCCATT+TGG 0.332786 6_4:-27953911 None:intergenic
CTCCAACAATGTCAAATTGC+AGG 0.336874 6_4:+27953271 Msa0984140:five_prime_UTR
AGAGTACCTTTGATTGTGTC+AGG 0.339380 6_4:+27950640 Msa0984140:five_prime_UTR
GACCAAGCATTTGACATTGT+TGG 0.343423 6_4:-27953310 None:intergenic
GACAAGCAGTAAAAGTTTAT+CGG 0.363077 6_4:-27950617 None:intergenic
CAATGTCAAATTGCAGGCTT+GGG 0.366731 6_4:+27953277 Msa0984140:five_prime_UTR
CATAGTGACAATTACAGAAT+TGG 0.378131 6_4:-27954258 None:intergenic
CAATCTGTTTCAGCTTGAAT+AGG 0.382751 6_4:-27950991 None:intergenic
GAGGGAAAACCCTTGCAAAT+TGG 0.399141 6_4:-27950463 None:intergenic
ACAATGTCAAATGCTTGGTC+TGG 0.403543 6_4:+27953313 Msa0984140:exon
AGCCTGCAATTTGACATTGT+TGG 0.403841 6_4:-27953273 None:intergenic
ACAATGTCAAATTGCAGGCT+TGG 0.414903 6_4:+27953276 Msa0984140:five_prime_UTR
AAATCCATAGCGTCTCTTGC+GGG 0.439000 6_4:+27950531 Msa0984140:five_prime_UTR
TTGCAAAACTTCTTCATGAC+CGG 0.453391 6_4:+27951037 Msa0984140:five_prime_UTR
TCCATGGAGAATTTGGTGTC+AGG 0.459130 6_4:+27950554 Msa0984140:five_prime_UTR
AGGTACAAATTTCCAATTGT+AGG 0.463626 6_4:+27954061 Msa0984140:intron
AAATTGTTTGAGTTCCTCAA+TGG 0.471669 6_4:-27953362 None:intergenic
CTCCAACAATGTCAAATGCT+TGG 0.473618 6_4:+27953308 Msa0984140:exon
ATCAATAAATCTTACAAGGA+AGG 0.477533 6_4:+27950407 Msa0984140:five_prime_UTR
ACAAGCAGTAAAAGTTTATC+GGG 0.477726 6_4:-27950616 None:intergenic
CTATTCAAGCTGAAACAGAT+TGG 0.478401 6_4:+27950992 Msa0984140:five_prime_UTR
TAGTGGTTAATGAAATCTGA+TGG 0.484600 6_4:+27954143 Msa0984140:three_prime_UTR
CAATGTCAAATGCTTGGTCT+GGG 0.486270 6_4:+27953314 Msa0984140:exon
TAGCGTCTCTTGCGGGTCCA+TGG 0.489160 6_4:+27950538 Msa0984140:five_prime_UTR
CAAGGTCCACCATGACTGTA+AGG 0.490493 6_4:-27950583 None:intergenic
ATGATTTGATAAAATTAACT+TGG 0.492727 6_4:-27954175 None:intergenic
AACTGAACGTTCGTGGGTAG+AGG 0.492865 6_4:-27950482 None:intergenic
CAAATCCATAGCGTCTCTTG+CGG 0.495008 6_4:+27950530 Msa0984140:five_prime_UTR
ATGAGAAAGAACATAAATAG+TGG 0.495321 6_4:+27954126 Msa0984140:three_prime_UTR
TATTCAAGCTGAAACAGATT+GGG 0.504544 6_4:+27950993 Msa0984140:five_prime_UTR
ATTTGAAAACTGAACGTTCG+TGG 0.514927 6_4:-27950489 None:intergenic
AATTTGACATTGTTGGAGAA+TGG 0.515371 6_4:-27953266 None:intergenic
AGGAAGGCTAAAACTCCAAA+TGG 0.517189 6_4:+27953896 Msa0984140:CDS
ACCTTTGATTGTGTCAGGGT+CGG 0.518796 6_4:+27950645 Msa0984140:five_prime_UTR
TCCAATTAATGCAACATGGA+TGG 0.520892 6_4:+27954205 Msa0984140:three_prime_UTR
CATTTGACATTGTTGGAGCA+TGG 0.525905 6_4:-27953303 None:intergenic
TAATGCAACATGGATGGACT+TGG 0.527685 6_4:+27954211 Msa0984140:three_prime_UTR
TATTAATGATGATTCCATTG+AGG 0.530317 6_4:+27953348 Msa0984140:CDS
ATTAATCAATAAATCTTACA+AGG 0.539810 6_4:+27950403 Msa0984140:five_prime_UTR
GGCCAATTTAAATGTGATTG+TGG 0.541689 6_4:+27953917 Msa0984140:CDS
CTCTGAAAATTGTAGGCTTG+GGG 0.549249 6_4:+27953241 Msa0984140:intron
TGGACCCGCAAGAGACGCTA+TGG 0.556214 6_4:-27950535 None:intergenic
CCCTGACACCAAATTCTCCA+TGG 0.556606 6_4:-27950555 None:intergenic
CCATGGAGAATTTGGTGTCA+GGG 0.559924 6_4:+27950555 Msa0984140:five_prime_UTR
AAGGCTTTACTATTCTTCGA+AGG 0.573698 6_4:+27950426 Msa0984140:five_prime_UTR
AACTCAAACAATTTAAGGAA+AGG 0.573878 6_4:+27953371 Msa0984140:CDS
AGGGTAGATCCTTACAGTCA+TGG 0.589537 6_4:+27950574 Msa0984140:five_prime_UTR
TGTAGATCGACCAATTTGCA+AGG 0.592519 6_4:+27950453 Msa0984140:five_prime_UTR
TTTGAAAACTGAACGTTCGT+GGG 0.600541 6_4:-27950488 None:intergenic
GCAGTAAAAGTTTATCGGGA+AGG 0.604212 6_4:-27950612 None:intergenic
AGTGGTTAATGAAATCTGAT+GGG 0.604425 6_4:+27954144 Msa0984140:three_prime_UTR
TTATCGGGAAGGAGCGAGCA+AGG 0.605530 6_4:-27950601 None:intergenic
ACTGAACGTTCGTGGGTAGA+GGG 0.607686 6_4:-27950481 None:intergenic
GTAGATCGACCAATTTGCAA+GGG 0.609149 6_4:+27950454 Msa0984140:five_prime_UTR
CAAGCTGAAACAGATTGGGT+AGG 0.611478 6_4:+27950997 Msa0984140:five_prime_UTR
GAGTACCTTTGATTGTGTCA+GGG 0.614624 6_4:+27950641 Msa0984140:five_prime_UTR
ACCGGCAACAAACACAAACA+AGG 0.627964 6_4:+27951055 Msa0984140:five_prime_UTR
ACTCTCCAATTAATGCAACA+TGG 0.635926 6_4:+27954201 Msa0984140:three_prime_UTR
AATGTCAAATTGCAGGCTTG+GGG 0.640848 6_4:+27953278 Msa0984140:five_prime_UTR
ACAGCTGCACTAAATGCACC+AGG 0.652832 6_4:+27953876 Msa0984140:intron
CACTTCTGTCAATGAGACTG+TGG 0.662055 6_4:+27954235 Msa0984140:three_prime_UTR
CTGCACTAAATGCACCAGGA+AGG 0.665837 6_4:+27953880 Msa0984140:CDS
GCCGACCCTGACACAATCAA+AGG 0.668703 6_4:-27950646 None:intergenic
GTAGATCCTTACAGTCATGG+TGG 0.717900 6_4:+27950577 Msa0984140:five_prime_UTR
AGGGTCGGCGCGTTTCATGG+CGG 0.720488 6_4:+27950660 Msa0984140:five_prime_UTR
GGCAACAAACACAAACAAGG+AGG 0.739402 6_4:+27951058 Msa0984140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCATGAATAAAAAAAA+AGG - chr6_4:27951434-27951453 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG - chr6_4:27953400-27953419 None:intergenic 10.0%
!! ATTATATATATCAATGTATT+TGG + chr6_4:27954420-27954439 Msa0984140:three_prime_UTR 10.0%
!! ATATTCATGAATAAAAAAAA+AGG - chr6_4:27951434-27951453 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG - chr6_4:27953400-27953419 None:intergenic 10.0%
!! ATTATATATATCAATGTATT+TGG + chr6_4:27954420-27954439 Msa0984140:three_prime_UTR 10.0%
!! ATTAATCAATAAATCTTACA+AGG + chr6_4:27950403-27950422 Msa0984140:five_prime_UTR 15.0%
!! ATATATGTAAAATTGTTCTA+CGG + chr6_4:27952283-27952302 Msa0984140:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG + chr6_4:27952519-27952538 Msa0984140:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG - chr6_4:27952624-27952643 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG - chr6_4:27952731-27952750 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG - chr6_4:27953080-27953099 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG + chr6_4:27953079-27953098 Msa0984140:intron 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG + chr6_4:27953574-27953593 Msa0984140:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG - chr6_4:27953635-27953654 None:intergenic 15.0%
!! CTGTTATTATTATTATTACA+AGG + chr6_4:27953774-27953793 Msa0984140:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG - chr6_4:27954178-27954197 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG + chr6_4:27954326-27954345 Msa0984140:three_prime_UTR 15.0%
!!! TTTTTTATTGATAAACTCAT+TGG + chr6_4:27954376-27954395 Msa0984140:three_prime_UTR 15.0%
!! ATTAATCAATAAATCTTACA+AGG + chr6_4:27950403-27950422 Msa0984140:five_prime_UTR 15.0%
!! ATATATGTAAAATTGTTCTA+CGG + chr6_4:27952283-27952302 Msa0984140:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG + chr6_4:27952519-27952538 Msa0984140:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG - chr6_4:27952624-27952643 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG - chr6_4:27952731-27952750 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG - chr6_4:27953080-27953099 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG + chr6_4:27953079-27953098 Msa0984140:intron 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG + chr6_4:27953574-27953593 Msa0984140:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG - chr6_4:27953635-27953654 None:intergenic 15.0%
!! CTGTTATTATTATTATTACA+AGG + chr6_4:27953774-27953793 Msa0984140:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG - chr6_4:27954178-27954197 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG + chr6_4:27954326-27954345 Msa0984140:three_prime_UTR 15.0%
!!! TTTTTTATTGATAAACTCAT+TGG + chr6_4:27954376-27954395 Msa0984140:three_prime_UTR 15.0%
!! ACTGACAAATTAAATAAACA+GGG - chr6_4:27950752-27950771 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG - chr6_4:27950753-27950772 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG + chr6_4:27950940-27950959 Msa0984140:intron 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG - chr6_4:27951107-27951126 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG - chr6_4:27951108-27951127 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG + chr6_4:27951125-27951144 Msa0984140:intron 20.0%
!! CATGAATAAAAAAAAAGGAA+GGG - chr6_4:27951429-27951448 None:intergenic 20.0%
!! TCATGAATAAAAAAAAAGGA+AGG - chr6_4:27951430-27951449 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG - chr6_4:27951705-27951724 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG + chr6_4:27951733-27951752 Msa0984140:five_prime_UTR 20.0%
!! TACAAATATTTGCTTTACTT+TGG - chr6_4:27951786-27951805 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG + chr6_4:27951789-27951808 Msa0984140:intron 20.0%
!!! TTTTTATATATACATGCCAT+CGG + chr6_4:27951818-27951837 Msa0984140:intron 20.0%
!! AACGATGTAAATCAAAATAA+AGG - chr6_4:27951878-27951897 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG + chr6_4:27951879-27951898 Msa0984140:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG - chr6_4:27952008-27952027 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG + chr6_4:27952392-27952411 Msa0984140:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG - chr6_4:27952662-27952681 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG + chr6_4:27952934-27952953 Msa0984140:intron 20.0%
!!! ACAATTTTCAGAGTTTTTAA+TGG - chr6_4:27953234-27953253 None:intergenic 20.0%
!!! TTAAAAACTCTGAAAATTGT+AGG + chr6_4:27953234-27953253 Msa0984140:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG - chr6_4:27953576-27953595 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG + chr6_4:27953573-27953592 Msa0984140:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG - chr6_4:27953721-27953740 None:intergenic 20.0%
!!! CATGTATATTTTTTTACCTT+GGG - chr6_4:27953964-27953983 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG - chr6_4:27953965-27953984 None:intergenic 20.0%
!! ACTGACAAATTAAATAAACA+GGG - chr6_4:27950752-27950771 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG - chr6_4:27950753-27950772 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG + chr6_4:27950940-27950959 Msa0984140:intron 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG - chr6_4:27951107-27951126 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG - chr6_4:27951108-27951127 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG + chr6_4:27951125-27951144 Msa0984140:intron 20.0%
!! CATGAATAAAAAAAAAGGAA+GGG - chr6_4:27951429-27951448 None:intergenic 20.0%
!! TCATGAATAAAAAAAAAGGA+AGG - chr6_4:27951430-27951449 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG - chr6_4:27951705-27951724 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG + chr6_4:27951733-27951752 Msa0984140:five_prime_UTR 20.0%
!! TACAAATATTTGCTTTACTT+TGG - chr6_4:27951786-27951805 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG + chr6_4:27951789-27951808 Msa0984140:intron 20.0%
!!! TTTTTATATATACATGCCAT+CGG + chr6_4:27951818-27951837 Msa0984140:intron 20.0%
!! AACGATGTAAATCAAAATAA+AGG - chr6_4:27951878-27951897 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG + chr6_4:27951879-27951898 Msa0984140:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG - chr6_4:27952008-27952027 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG + chr6_4:27952392-27952411 Msa0984140:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG - chr6_4:27952662-27952681 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG + chr6_4:27952934-27952953 Msa0984140:intron 20.0%
!!! ACAATTTTCAGAGTTTTTAA+TGG - chr6_4:27953234-27953253 None:intergenic 20.0%
!!! TTAAAAACTCTGAAAATTGT+AGG + chr6_4:27953234-27953253 Msa0984140:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG - chr6_4:27953576-27953595 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG + chr6_4:27953573-27953592 Msa0984140:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG - chr6_4:27953721-27953740 None:intergenic 20.0%
!!! CATGTATATTTTTTTACCTT+GGG - chr6_4:27953964-27953983 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG - chr6_4:27953965-27953984 None:intergenic 20.0%
! ATCAATAAATCTTACAAGGA+AGG + chr6_4:27950407-27950426 Msa0984140:five_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG - chr6_4:27950728-27950747 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG - chr6_4:27950751-27950770 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG - chr6_4:27951029-27951048 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG - chr6_4:27951160-27951179 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG + chr6_4:27951564-27951583 Msa0984140:intron 25.0%
! CAGATTTATTTGAAAAGAGA+GGG + chr6_4:27951565-27951584 Msa0984140:intron 25.0%
! ACTATATTAACTTAAACCGA+TGG - chr6_4:27951837-27951856 None:intergenic 25.0%
! CTGAACATACTCATAATAAA+AGG - chr6_4:27952102-27952121 None:intergenic 25.0%
!! TGCTATTAGTATTTCTATCT+TGG + chr6_4:27952123-27952142 Msa0984140:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG + chr6_4:27952145-27952164 Msa0984140:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG + chr6_4:27952234-27952253 Msa0984140:intron 25.0%
! CCATAAGAATTTAACCTAAA+CGG - chr6_4:27952472-27952491 None:intergenic 25.0%
!! CATATTTGTGAATTTTGAAC+TGG - chr6_4:27952794-27952813 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG - chr6_4:27952870-27952889 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG + chr6_4:27952965-27952984 Msa0984140:intron 25.0%
!! TTTTCATTGGTACTTATAAG+AGG + chr6_4:27952978-27952997 Msa0984140:intron 25.0%
! TTTCATTGGTACTTATAAGA+GGG + chr6_4:27952979-27952998 Msa0984140:intron 25.0%
! ATAGTTTATACTAAACCTGA+GGG - chr6_4:27953186-27953205 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG - chr6_4:27953187-27953206 None:intergenic 25.0%
!! GAGTTTTTAATGGTTGTAAA+TGG - chr6_4:27953224-27953243 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG + chr6_4:27953348-27953367 Msa0984140:CDS 25.0%
! AACTCAAACAATTTAAGGAA+AGG + chr6_4:27953371-27953390 Msa0984140:CDS 25.0%
! AGACTTAGAATTGTGTTAAT+TGG + chr6_4:27953682-27953701 Msa0984140:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG - chr6_4:27954076-27954095 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG + chr6_4:27954126-27954145 Msa0984140:three_prime_UTR 25.0%
!! GTAATTGTCACTATGTTTTA+AGG + chr6_4:27954266-27954285 Msa0984140:three_prime_UTR 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG + chr6_4:27954277-27954296 Msa0984140:three_prime_UTR 25.0%
! ATCAATAAATCTTACAAGGA+AGG + chr6_4:27950407-27950426 Msa0984140:five_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG - chr6_4:27950728-27950747 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG - chr6_4:27950751-27950770 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG - chr6_4:27951029-27951048 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG - chr6_4:27951160-27951179 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG + chr6_4:27951564-27951583 Msa0984140:intron 25.0%
! CAGATTTATTTGAAAAGAGA+GGG + chr6_4:27951565-27951584 Msa0984140:intron 25.0%
! ACTATATTAACTTAAACCGA+TGG - chr6_4:27951837-27951856 None:intergenic 25.0%
! CTGAACATACTCATAATAAA+AGG - chr6_4:27952102-27952121 None:intergenic 25.0%
!! TGCTATTAGTATTTCTATCT+TGG + chr6_4:27952123-27952142 Msa0984140:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG + chr6_4:27952145-27952164 Msa0984140:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG + chr6_4:27952234-27952253 Msa0984140:intron 25.0%
! CCATAAGAATTTAACCTAAA+CGG - chr6_4:27952472-27952491 None:intergenic 25.0%
!! CATATTTGTGAATTTTGAAC+TGG - chr6_4:27952794-27952813 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG - chr6_4:27952870-27952889 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG + chr6_4:27952965-27952984 Msa0984140:intron 25.0%
!! TTTTCATTGGTACTTATAAG+AGG + chr6_4:27952978-27952997 Msa0984140:intron 25.0%
! TTTCATTGGTACTTATAAGA+GGG + chr6_4:27952979-27952998 Msa0984140:intron 25.0%
! ATAGTTTATACTAAACCTGA+GGG - chr6_4:27953186-27953205 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG - chr6_4:27953187-27953206 None:intergenic 25.0%
!! GAGTTTTTAATGGTTGTAAA+TGG - chr6_4:27953224-27953243 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG + chr6_4:27953348-27953367 Msa0984140:CDS 25.0%
! AACTCAAACAATTTAAGGAA+AGG + chr6_4:27953371-27953390 Msa0984140:CDS 25.0%
! AGACTTAGAATTGTGTTAAT+TGG + chr6_4:27953682-27953701 Msa0984140:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG - chr6_4:27954076-27954095 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG + chr6_4:27954126-27954145 Msa0984140:three_prime_UTR 25.0%
!! GTAATTGTCACTATGTTTTA+AGG + chr6_4:27954266-27954285 Msa0984140:three_prime_UTR 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG + chr6_4:27954277-27954296 Msa0984140:three_prime_UTR 25.0%
ACAAGCAGTAAAAGTTTATC+GGG - chr6_4:27950619-27950638 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG - chr6_4:27950620-27950639 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG - chr6_4:27950747-27950766 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG - chr6_4:27950842-27950861 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG - chr6_4:27950843-27950862 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG + chr6_4:27950851-27950870 Msa0984140:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG + chr6_4:27950993-27951012 Msa0984140:five_prime_UTR 30.0%
CTTGCATGTTAGTTGAAATT+AGG - chr6_4:27951600-27951619 None:intergenic 30.0%
! AAGGAGTTGAAATCTTTTCA+TGG + chr6_4:27951752-27951771 Msa0984140:five_prime_UTR 30.0%
! AGGAGTTGAAATCTTTTCAT+GGG + chr6_4:27951753-27951772 Msa0984140:five_prime_UTR 30.0%
! TGACATAATAGTTTGGAACT+TGG + chr6_4:27952241-27952260 Msa0984140:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG + chr6_4:27952242-27952261 Msa0984140:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG + chr6_4:27952287-27952306 Msa0984140:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG + chr6_4:27952288-27952307 Msa0984140:intron 30.0%
TTAGAAGCAGGTTAATTTAG+TGG - chr6_4:27952357-27952376 None:intergenic 30.0%
GGCAATCTAGTACTATAAAA+CGG - chr6_4:27952451-27952470 None:intergenic 30.0%
! CCGTTTAGGTTAAATTCTTA+TGG + chr6_4:27952469-27952488 Msa0984140:intron 30.0%
TTATGGAACGACAATAGATA+TGG + chr6_4:27952486-27952505 Msa0984140:intron 30.0%
ACAGGGTATGAAATATAACA+AGG + chr6_4:27952572-27952591 Msa0984140:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG + chr6_4:27952743-27952762 Msa0984140:intron 30.0%
TGAAAACTTTCTTCTGATAC+AGG - chr6_4:27952964-27952983 None:intergenic 30.0%
! GGTGAATTTAGGACTAAATA+GGG + chr6_4:27953114-27953133 Msa0984140:intron 30.0%
! GTGAATTTAGGACTAAATAG+GGG + chr6_4:27953115-27953134 Msa0984140:intron 30.0%
AATTTGACATTGTTGGAGAA+TGG - chr6_4:27953269-27953288 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG - chr6_4:27953365-27953384 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG + chr6_4:27953366-27953385 Msa0984140:CDS 30.0%
! ACAAGCATCACAATTTTCAA+AGG + chr6_4:27953481-27953500 Msa0984140:intron 30.0%
CAAACAATAGCTTCAATAAC+AGG - chr6_4:27953510-27953529 None:intergenic 30.0%
TTGAAGCTATTGTTTGTGAA+AGG + chr6_4:27953514-27953533 Msa0984140:intron 30.0%
TCACATTTAAATTGGCCATT+TGG - chr6_4:27953914-27953933 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG - chr6_4:27953922-27953941 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG + chr6_4:27953976-27953995 Msa0984140:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG + chr6_4:27954021-27954040 Msa0984140:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG + chr6_4:27954061-27954080 Msa0984140:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG + chr6_4:27954078-27954097 Msa0984140:CDS 30.0%
TAGTGGTTAATGAAATCTGA+TGG + chr6_4:27954143-27954162 Msa0984140:three_prime_UTR 30.0%
AGTGGTTAATGAAATCTGAT+GGG + chr6_4:27954144-27954163 Msa0984140:three_prime_UTR 30.0%
CATAGTGACAATTACAGAAT+TGG - chr6_4:27954261-27954280 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG + chr6_4:27954276-27954295 Msa0984140:three_prime_UTR 30.0%
ACAAGCAGTAAAAGTTTATC+GGG - chr6_4:27950619-27950638 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG - chr6_4:27950620-27950639 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG - chr6_4:27950747-27950766 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG - chr6_4:27950842-27950861 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG - chr6_4:27950843-27950862 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG + chr6_4:27950851-27950870 Msa0984140:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG + chr6_4:27950993-27951012 Msa0984140:five_prime_UTR 30.0%
CTTGCATGTTAGTTGAAATT+AGG - chr6_4:27951600-27951619 None:intergenic 30.0%
! AAGGAGTTGAAATCTTTTCA+TGG + chr6_4:27951752-27951771 Msa0984140:five_prime_UTR 30.0%
! AGGAGTTGAAATCTTTTCAT+GGG + chr6_4:27951753-27951772 Msa0984140:five_prime_UTR 30.0%
! TGACATAATAGTTTGGAACT+TGG + chr6_4:27952241-27952260 Msa0984140:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG + chr6_4:27952242-27952261 Msa0984140:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG + chr6_4:27952287-27952306 Msa0984140:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG + chr6_4:27952288-27952307 Msa0984140:intron 30.0%
TTAGAAGCAGGTTAATTTAG+TGG - chr6_4:27952357-27952376 None:intergenic 30.0%
GGCAATCTAGTACTATAAAA+CGG - chr6_4:27952451-27952470 None:intergenic 30.0%
! CCGTTTAGGTTAAATTCTTA+TGG + chr6_4:27952469-27952488 Msa0984140:intron 30.0%
TTATGGAACGACAATAGATA+TGG + chr6_4:27952486-27952505 Msa0984140:intron 30.0%
ACAGGGTATGAAATATAACA+AGG + chr6_4:27952572-27952591 Msa0984140:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG + chr6_4:27952743-27952762 Msa0984140:intron 30.0%
TGAAAACTTTCTTCTGATAC+AGG - chr6_4:27952964-27952983 None:intergenic 30.0%
! GGTGAATTTAGGACTAAATA+GGG + chr6_4:27953114-27953133 Msa0984140:intron 30.0%
! GTGAATTTAGGACTAAATAG+GGG + chr6_4:27953115-27953134 Msa0984140:intron 30.0%
AATTTGACATTGTTGGAGAA+TGG - chr6_4:27953269-27953288 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG - chr6_4:27953365-27953384 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG + chr6_4:27953366-27953385 Msa0984140:CDS 30.0%
! ACAAGCATCACAATTTTCAA+AGG + chr6_4:27953481-27953500 Msa0984140:intron 30.0%
CAAACAATAGCTTCAATAAC+AGG - chr6_4:27953510-27953529 None:intergenic 30.0%
TTGAAGCTATTGTTTGTGAA+AGG + chr6_4:27953514-27953533 Msa0984140:intron 30.0%
TCACATTTAAATTGGCCATT+TGG - chr6_4:27953914-27953933 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG - chr6_4:27953922-27953941 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG + chr6_4:27953976-27953995 Msa0984140:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG + chr6_4:27954021-27954040 Msa0984140:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG + chr6_4:27954061-27954080 Msa0984140:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG + chr6_4:27954078-27954097 Msa0984140:CDS 30.0%
TAGTGGTTAATGAAATCTGA+TGG + chr6_4:27954143-27954162 Msa0984140:three_prime_UTR 30.0%
AGTGGTTAATGAAATCTGAT+GGG + chr6_4:27954144-27954163 Msa0984140:three_prime_UTR 30.0%
CATAGTGACAATTACAGAAT+TGG - chr6_4:27954261-27954280 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG + chr6_4:27954276-27954295 Msa0984140:three_prime_UTR 30.0%
AAGGCTTTACTATTCTTCGA+AGG + chr6_4:27950426-27950445 Msa0984140:five_prime_UTR 35.0%
TTTGAAAACTGAACGTTCGT+GGG - chr6_4:27950491-27950510 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG - chr6_4:27950492-27950511 None:intergenic 35.0%
! ACGTTCAGTTTTCAAATTGC+TGG + chr6_4:27950495-27950514 Msa0984140:five_prime_UTR 35.0%
! CTGCATTATTTCTTGCTTGT+GGG + chr6_4:27950698-27950717 Msa0984140:intron 35.0%
! TGCATTATTTCTTGCTTGTG+GGG + chr6_4:27950699-27950718 Msa0984140:intron 35.0%
AATCGCTTGATTCTTTGTTC+TGG + chr6_4:27950880-27950899 Msa0984140:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG + chr6_4:27950881-27950900 Msa0984140:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG + chr6_4:27950886-27950905 Msa0984140:intron 35.0%
CAATCTGTTTCAGCTTGAAT+AGG - chr6_4:27950994-27951013 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG + chr6_4:27950992-27951011 Msa0984140:five_prime_UTR 35.0%
TTGCAAAACTTCTTCATGAC+CGG + chr6_4:27951037-27951056 Msa0984140:five_prime_UTR 35.0%
ATTTACCAATCTATGTGTGC+AGG - chr6_4:27951513-27951532 None:intergenic 35.0%
AAGCAATAAGCAGATATGTG+TGG - chr6_4:27951675-27951694 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG + chr6_4:27951887-27951906 Msa0984140:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG + chr6_4:27952048-27952067 Msa0984140:intron 35.0%
ATGGTTGAAGTTGCTATCAT+TGG + chr6_4:27952325-27952344 Msa0984140:intron 35.0%
ATTAACCTGCTTCTAATGCT+TGG + chr6_4:27952361-27952380 Msa0984140:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG + chr6_4:27952455-27952474 Msa0984140:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG + chr6_4:27952537-27952556 Msa0984140:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG - chr6_4:27952549-27952568 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG + chr6_4:27952554-27952573 Msa0984140:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG + chr6_4:27952555-27952574 Msa0984140:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG - chr6_4:27952785-27952804 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG - chr6_4:27952786-27952805 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG - chr6_4:27952848-27952867 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG - chr6_4:27952857-27952876 None:intergenic 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG + chr6_4:27953092-27953111 Msa0984140:intron 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG + chr6_4:27953093-27953112 Msa0984140:intron 35.0%
! GGGTGAATTTAGGACTAAAT+AGG + chr6_4:27953113-27953132 Msa0984140:intron 35.0%
! AACTCTGAAAATTGTAGGCT+TGG + chr6_4:27953239-27953258 Msa0984140:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG + chr6_4:27953240-27953259 Msa0984140:intron 35.0%
CATCATGACTGAACTTTACA+AGG + chr6_4:27953832-27953851 Msa0984140:intron 35.0%
GAACTTTACAAGGTCATTCA+CGG + chr6_4:27953842-27953861 Msa0984140:intron 35.0%
GGCCAATTTAAATGTGATTG+TGG + chr6_4:27953917-27953936 Msa0984140:CDS 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG + chr6_4:27953934-27953953 Msa0984140:CDS 35.0%
TGTGCTTATGGATATCATGA+TGG + chr6_4:27953988-27954007 Msa0984140:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG + chr6_4:27954041-27954060 Msa0984140:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG + chr6_4:27954201-27954220 Msa0984140:three_prime_UTR 35.0%
TCCAATTAATGCAACATGGA+TGG + chr6_4:27954205-27954224 Msa0984140:three_prime_UTR 35.0%
TCCATCCATGTTGCATTAAT+TGG - chr6_4:27954209-27954228 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG + chr6_4:27954397-27954416 Msa0984140:three_prime_UTR 35.0%
AAGGCTTTACTATTCTTCGA+AGG + chr6_4:27950426-27950445 Msa0984140:five_prime_UTR 35.0%
TTTGAAAACTGAACGTTCGT+GGG - chr6_4:27950491-27950510 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG - chr6_4:27950492-27950511 None:intergenic 35.0%
! ACGTTCAGTTTTCAAATTGC+TGG + chr6_4:27950495-27950514 Msa0984140:five_prime_UTR 35.0%
! CTGCATTATTTCTTGCTTGT+GGG + chr6_4:27950698-27950717 Msa0984140:intron 35.0%
! TGCATTATTTCTTGCTTGTG+GGG + chr6_4:27950699-27950718 Msa0984140:intron 35.0%
AATCGCTTGATTCTTTGTTC+TGG + chr6_4:27950880-27950899 Msa0984140:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG + chr6_4:27950881-27950900 Msa0984140:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG + chr6_4:27950886-27950905 Msa0984140:intron 35.0%
CAATCTGTTTCAGCTTGAAT+AGG - chr6_4:27950994-27951013 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG + chr6_4:27950992-27951011 Msa0984140:five_prime_UTR 35.0%
TTGCAAAACTTCTTCATGAC+CGG + chr6_4:27951037-27951056 Msa0984140:five_prime_UTR 35.0%
ATTTACCAATCTATGTGTGC+AGG - chr6_4:27951513-27951532 None:intergenic 35.0%
AAGCAATAAGCAGATATGTG+TGG - chr6_4:27951675-27951694 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG + chr6_4:27951887-27951906 Msa0984140:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG + chr6_4:27952048-27952067 Msa0984140:intron 35.0%
ATGGTTGAAGTTGCTATCAT+TGG + chr6_4:27952325-27952344 Msa0984140:intron 35.0%
ATTAACCTGCTTCTAATGCT+TGG + chr6_4:27952361-27952380 Msa0984140:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG + chr6_4:27952455-27952474 Msa0984140:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG + chr6_4:27952537-27952556 Msa0984140:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG - chr6_4:27952549-27952568 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG + chr6_4:27952554-27952573 Msa0984140:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG + chr6_4:27952555-27952574 Msa0984140:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG - chr6_4:27952785-27952804 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG - chr6_4:27952786-27952805 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG - chr6_4:27952848-27952867 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG - chr6_4:27952857-27952876 None:intergenic 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG + chr6_4:27953092-27953111 Msa0984140:intron 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG + chr6_4:27953093-27953112 Msa0984140:intron 35.0%
! GGGTGAATTTAGGACTAAAT+AGG + chr6_4:27953113-27953132 Msa0984140:intron 35.0%
! AACTCTGAAAATTGTAGGCT+TGG + chr6_4:27953239-27953258 Msa0984140:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG + chr6_4:27953240-27953259 Msa0984140:intron 35.0%
CATCATGACTGAACTTTACA+AGG + chr6_4:27953832-27953851 Msa0984140:intron 35.0%
GAACTTTACAAGGTCATTCA+CGG + chr6_4:27953842-27953861 Msa0984140:intron 35.0%
GGCCAATTTAAATGTGATTG+TGG + chr6_4:27953917-27953936 Msa0984140:CDS 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG + chr6_4:27953934-27953953 Msa0984140:CDS 35.0%
TGTGCTTATGGATATCATGA+TGG + chr6_4:27953988-27954007 Msa0984140:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG + chr6_4:27954041-27954060 Msa0984140:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG + chr6_4:27954201-27954220 Msa0984140:three_prime_UTR 35.0%
TCCAATTAATGCAACATGGA+TGG + chr6_4:27954205-27954224 Msa0984140:three_prime_UTR 35.0%
TCCATCCATGTTGCATTAAT+TGG - chr6_4:27954209-27954228 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG + chr6_4:27954397-27954416 Msa0984140:three_prime_UTR 35.0%
TGTAGATCGACCAATTTGCA+AGG + chr6_4:27950453-27950472 Msa0984140:five_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG + chr6_4:27950454-27950473 Msa0984140:five_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG - chr6_4:27950615-27950634 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG + chr6_4:27950640-27950659 Msa0984140:five_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG + chr6_4:27950641-27950660 Msa0984140:five_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG + chr6_4:27950697-27950716 Msa0984140:intron 40.0%
TTGTCAGTAGCAGTTATGTG+TGG + chr6_4:27950764-27950783 Msa0984140:intron 40.0%
! TCCTTGTTTGTGTTTGTTGC+CGG - chr6_4:27951059-27951078 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG - chr6_4:27951397-27951416 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG + chr6_4:27951396-27951415 Msa0984140:intron 40.0%
CAATCTATGTGTGCAGGATA+CGG - chr6_4:27951507-27951526 None:intergenic 40.0%
GTGAACTCCTTGAACATTTC+CGG - chr6_4:27952047-27952066 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG + chr6_4:27952291-27952310 Msa0984140:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG - chr6_4:27952411-27952430 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG - chr6_4:27952438-27952457 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG + chr6_4:27952544-27952563 Msa0984140:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG - chr6_4:27952756-27952775 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG + chr6_4:27952904-27952923 Msa0984140:intron 40.0%
AGGGTGAATTTCACATGAAG+TGG + chr6_4:27952998-27953017 Msa0984140:intron 40.0%
GTTTATACTAAACCTGAGGG+TGG - chr6_4:27953183-27953202 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG + chr6_4:27953241-27953260 Msa0984140:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG + chr6_4:27953271-27953290 Msa0984140:five_prime_UTR 40.0%
AGCCTGCAATTTGACATTGT+TGG - chr6_4:27953276-27953295 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG + chr6_4:27953276-27953295 Msa0984140:five_prime_UTR 40.0%
CAATGTCAAATTGCAGGCTT+GGG + chr6_4:27953277-27953296 Msa0984140:five_prime_UTR 40.0%
AATGTCAAATTGCAGGCTTG+GGG + chr6_4:27953278-27953297 Msa0984140:five_prime_UTR 40.0%
CATTTGACATTGTTGGAGCA+TGG - chr6_4:27953306-27953325 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG + chr6_4:27953308-27953327 Msa0984140:exon 40.0%
GACCAAGCATTTGACATTGT+TGG - chr6_4:27953313-27953332 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG + chr6_4:27953313-27953332 Msa0984140:exon 40.0%
CAATGTCAAATGCTTGGTCT+GGG + chr6_4:27953314-27953333 Msa0984140:exon 40.0%
AGCTATTGTTTGTGAAAGGC+AGG + chr6_4:27953518-27953537 Msa0984140:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG + chr6_4:27953609-27953628 Msa0984140:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG + chr6_4:27953846-27953865 Msa0984140:intron 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG - chr6_4:27953897-27953916 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG + chr6_4:27953896-27953915 Msa0984140:CDS 40.0%
! TTTTTGAACAGGCAATCCCA+AGG + chr6_4:27953945-27953964 Msa0984140:CDS 40.0%
! TAATGCAACATGGATGGACT+TGG + chr6_4:27954211-27954230 Msa0984140:three_prime_UTR 40.0%
TGTAGATCGACCAATTTGCA+AGG + chr6_4:27950453-27950472 Msa0984140:five_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG + chr6_4:27950454-27950473 Msa0984140:five_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG - chr6_4:27950615-27950634 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG + chr6_4:27950640-27950659 Msa0984140:five_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG + chr6_4:27950641-27950660 Msa0984140:five_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG + chr6_4:27950697-27950716 Msa0984140:intron 40.0%
TTGTCAGTAGCAGTTATGTG+TGG + chr6_4:27950764-27950783 Msa0984140:intron 40.0%
! TCCTTGTTTGTGTTTGTTGC+CGG - chr6_4:27951059-27951078 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG - chr6_4:27951397-27951416 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG + chr6_4:27951396-27951415 Msa0984140:intron 40.0%
CAATCTATGTGTGCAGGATA+CGG - chr6_4:27951507-27951526 None:intergenic 40.0%
GTGAACTCCTTGAACATTTC+CGG - chr6_4:27952047-27952066 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG + chr6_4:27952291-27952310 Msa0984140:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG - chr6_4:27952411-27952430 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG - chr6_4:27952438-27952457 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG + chr6_4:27952544-27952563 Msa0984140:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG - chr6_4:27952756-27952775 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG + chr6_4:27952904-27952923 Msa0984140:intron 40.0%
AGGGTGAATTTCACATGAAG+TGG + chr6_4:27952998-27953017 Msa0984140:intron 40.0%
GTTTATACTAAACCTGAGGG+TGG - chr6_4:27953183-27953202 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG + chr6_4:27953241-27953260 Msa0984140:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG + chr6_4:27953271-27953290 Msa0984140:five_prime_UTR 40.0%
AGCCTGCAATTTGACATTGT+TGG - chr6_4:27953276-27953295 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG + chr6_4:27953276-27953295 Msa0984140:five_prime_UTR 40.0%
CAATGTCAAATTGCAGGCTT+GGG + chr6_4:27953277-27953296 Msa0984140:five_prime_UTR 40.0%
AATGTCAAATTGCAGGCTTG+GGG + chr6_4:27953278-27953297 Msa0984140:five_prime_UTR 40.0%
CATTTGACATTGTTGGAGCA+TGG - chr6_4:27953306-27953325 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG + chr6_4:27953308-27953327 Msa0984140:exon 40.0%
GACCAAGCATTTGACATTGT+TGG - chr6_4:27953313-27953332 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG + chr6_4:27953313-27953332 Msa0984140:exon 40.0%
CAATGTCAAATGCTTGGTCT+GGG + chr6_4:27953314-27953333 Msa0984140:exon 40.0%
AGCTATTGTTTGTGAAAGGC+AGG + chr6_4:27953518-27953537 Msa0984140:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG + chr6_4:27953609-27953628 Msa0984140:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG + chr6_4:27953846-27953865 Msa0984140:intron 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG - chr6_4:27953897-27953916 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG + chr6_4:27953896-27953915 Msa0984140:CDS 40.0%
! TTTTTGAACAGGCAATCCCA+AGG + chr6_4:27953945-27953964 Msa0984140:CDS 40.0%
! TAATGCAACATGGATGGACT+TGG + chr6_4:27954211-27954230 Msa0984140:three_prime_UTR 40.0%
GAGGGAAAACCCTTGCAAAT+TGG - chr6_4:27950466-27950485 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG + chr6_4:27950530-27950549 Msa0984140:five_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG + chr6_4:27950531-27950550 Msa0984140:five_prime_UTR 45.0%
!! TCCATGGAGAATTTGGTGTC+AGG + chr6_4:27950554-27950573 Msa0984140:five_prime_UTR 45.0%
!! CCATGGAGAATTTGGTGTCA+GGG + chr6_4:27950555-27950574 Msa0984140:five_prime_UTR 45.0%
AGGGTAGATCCTTACAGTCA+TGG + chr6_4:27950574-27950593 Msa0984140:five_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG + chr6_4:27950577-27950596 Msa0984140:five_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG + chr6_4:27950645-27950664 Msa0984140:five_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG + chr6_4:27950997-27951016 Msa0984140:five_prime_UTR 45.0%
ACCGGCAACAAACACAAACA+AGG + chr6_4:27951055-27951074 Msa0984140:five_prime_UTR 45.0%
GGCAACAAACACAAACAAGG+AGG + chr6_4:27951058-27951077 Msa0984140:five_prime_UTR 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG - chr6_4:27951417-27951436 None:intergenic 45.0%
CGTATCCTGCACACATAGAT+TGG + chr6_4:27951505-27951524 Msa0984140:intron 45.0%
CTAGTCGTCTACATCACCAT+AGG - chr6_4:27951906-27951925 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG - chr6_4:27952037-27952056 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG + chr6_4:27952037-27952056 Msa0984140:intron 45.0%
AAGGGAGGAAAGTGGCATAA+TGG + chr6_4:27952306-27952325 Msa0984140:intron 45.0%
TCTCACCAAGCATTAGAAGC+AGG - chr6_4:27952369-27952388 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG - chr6_4:27952424-27952443 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG - chr6_4:27952425-27952444 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG - chr6_4:27952439-27952458 None:intergenic 45.0%
TTATTGCACGTCACATGCAG+TGG + chr6_4:27952882-27952901 Msa0984140:intron 45.0%
GGAGAACTAAGCCTAACTAG+AGG + chr6_4:27952903-27952922 Msa0984140:intron 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG - chr6_4:27952917-27952936 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG + chr6_4:27953103-27953122 Msa0984140:intron 45.0%
GCTAAAATTAAGCCACCCTC+AGG + chr6_4:27953168-27953187 Msa0984140:intron 45.0%
CACTTCTGTCAATGAGACTG+TGG + chr6_4:27954235-27954254 Msa0984140:three_prime_UTR 45.0%
GAGGGAAAACCCTTGCAAAT+TGG - chr6_4:27950466-27950485 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG + chr6_4:27950530-27950549 Msa0984140:five_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG + chr6_4:27950531-27950550 Msa0984140:five_prime_UTR 45.0%
!! TCCATGGAGAATTTGGTGTC+AGG + chr6_4:27950554-27950573 Msa0984140:five_prime_UTR 45.0%
!! CCATGGAGAATTTGGTGTCA+GGG + chr6_4:27950555-27950574 Msa0984140:five_prime_UTR 45.0%
AGGGTAGATCCTTACAGTCA+TGG + chr6_4:27950574-27950593 Msa0984140:five_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG + chr6_4:27950577-27950596 Msa0984140:five_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG + chr6_4:27950645-27950664 Msa0984140:five_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG + chr6_4:27950997-27951016 Msa0984140:five_prime_UTR 45.0%
ACCGGCAACAAACACAAACA+AGG + chr6_4:27951055-27951074 Msa0984140:five_prime_UTR 45.0%
GGCAACAAACACAAACAAGG+AGG + chr6_4:27951058-27951077 Msa0984140:five_prime_UTR 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG - chr6_4:27951417-27951436 None:intergenic 45.0%
CGTATCCTGCACACATAGAT+TGG + chr6_4:27951505-27951524 Msa0984140:intron 45.0%
CTAGTCGTCTACATCACCAT+AGG - chr6_4:27951906-27951925 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG - chr6_4:27952037-27952056 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG + chr6_4:27952037-27952056 Msa0984140:intron 45.0%
AAGGGAGGAAAGTGGCATAA+TGG + chr6_4:27952306-27952325 Msa0984140:intron 45.0%
TCTCACCAAGCATTAGAAGC+AGG - chr6_4:27952369-27952388 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG - chr6_4:27952424-27952443 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG - chr6_4:27952425-27952444 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG - chr6_4:27952439-27952458 None:intergenic 45.0%
TTATTGCACGTCACATGCAG+TGG + chr6_4:27952882-27952901 Msa0984140:intron 45.0%
GGAGAACTAAGCCTAACTAG+AGG + chr6_4:27952903-27952922 Msa0984140:intron 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG - chr6_4:27952917-27952936 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG + chr6_4:27953103-27953122 Msa0984140:intron 45.0%
GCTAAAATTAAGCCACCCTC+AGG + chr6_4:27953168-27953187 Msa0984140:intron 45.0%
CACTTCTGTCAATGAGACTG+TGG + chr6_4:27954235-27954254 Msa0984140:three_prime_UTR 45.0%
ACTGAACGTTCGTGGGTAGA+GGG - chr6_4:27950484-27950503 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG - chr6_4:27950485-27950504 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG + chr6_4:27950547-27950566 Msa0984140:five_prime_UTR 50.0%
CCCTGACACCAAATTCTCCA+TGG - chr6_4:27950558-27950577 None:intergenic 50.0%
CAAGGTCCACCATGACTGTA+AGG - chr6_4:27950586-27950605 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG - chr6_4:27950813-27950832 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG - chr6_4:27950830-27950849 None:intergenic 50.0%
!! CAGGATACGGACTGGTCTTA+TGG - chr6_4:27951494-27951513 None:intergenic 50.0%
TATGTGTGCAGGATACGGAC+TGG - chr6_4:27951502-27951521 None:intergenic 50.0%
ATGCAGAGACCTTAGTGCAC+CGG + chr6_4:27952025-27952044 Msa0984140:intron 50.0%
TTCTACGGAAGGGAGGAAAG+TGG + chr6_4:27952298-27952317 Msa0984140:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG + chr6_4:27952912-27952931 Msa0984140:intron 50.0%
ACAGCTGCACTAAATGCACC+AGG + chr6_4:27953876-27953895 Msa0984140:intron 50.0%
CTGCACTAAATGCACCAGGA+AGG + chr6_4:27953880-27953899 Msa0984140:CDS 50.0%
ACTGAACGTTCGTGGGTAGA+GGG - chr6_4:27950484-27950503 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG - chr6_4:27950485-27950504 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG + chr6_4:27950547-27950566 Msa0984140:five_prime_UTR 50.0%
CCCTGACACCAAATTCTCCA+TGG - chr6_4:27950558-27950577 None:intergenic 50.0%
CAAGGTCCACCATGACTGTA+AGG - chr6_4:27950586-27950605 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG - chr6_4:27950813-27950832 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG - chr6_4:27950830-27950849 None:intergenic 50.0%
!! CAGGATACGGACTGGTCTTA+TGG - chr6_4:27951494-27951513 None:intergenic 50.0%
TATGTGTGCAGGATACGGAC+TGG - chr6_4:27951502-27951521 None:intergenic 50.0%
ATGCAGAGACCTTAGTGCAC+CGG + chr6_4:27952025-27952044 Msa0984140:intron 50.0%
TTCTACGGAAGGGAGGAAAG+TGG + chr6_4:27952298-27952317 Msa0984140:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG + chr6_4:27952912-27952931 Msa0984140:intron 50.0%
ACAGCTGCACTAAATGCACC+AGG + chr6_4:27953876-27953895 Msa0984140:intron 50.0%
CTGCACTAAATGCACCAGGA+AGG + chr6_4:27953880-27953899 Msa0984140:CDS 50.0%
TTATCGGGAAGGAGCGAGCA+AGG - chr6_4:27950604-27950623 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG - chr6_4:27950649-27950668 None:intergenic 55.0%
GAGAACCAAGCCTCGCTAGA+GGG + chr6_4:27953020-27953039 Msa0984140:intron 55.0%
TTATCGGGAAGGAGCGAGCA+AGG - chr6_4:27950604-27950623 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG - chr6_4:27950649-27950668 None:intergenic 55.0%
GAGAACCAAGCCTCGCTAGA+GGG + chr6_4:27953020-27953039 Msa0984140:intron 55.0%
TGGACCCGCAAGAGACGCTA+TGG - chr6_4:27950538-27950557 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG + chr6_4:27950538-27950557 Msa0984140:five_prime_UTR 60.0%
GGAGAACCAAGCCTCGCTAG+AGG + chr6_4:27953019-27953038 Msa0984140:intron 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG - chr6_4:27953028-27953047 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG + chr6_4:27953028-27953047 Msa0984140:intron 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG - chr6_4:27953033-27953052 None:intergenic 60.0%
TGGACCCGCAAGAGACGCTA+TGG - chr6_4:27950538-27950557 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG + chr6_4:27950538-27950557 Msa0984140:five_prime_UTR 60.0%
GGAGAACCAAGCCTCGCTAG+AGG + chr6_4:27953019-27953038 Msa0984140:intron 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG - chr6_4:27953028-27953047 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG + chr6_4:27953028-27953047 Msa0984140:intron 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG - chr6_4:27953033-27953052 None:intergenic 60.0%
GTCAGGGTCGGCGCGTTTCA+TGG + chr6_4:27950657-27950676 Msa0984140:five_prime_UTR 65.0%
AGGGTCGGCGCGTTTCATGG+CGG + chr6_4:27950660-27950679 Msa0984140:five_prime_UTR 65.0%
GTCAGGGTCGGCGCGTTTCA+TGG + chr6_4:27950657-27950676 Msa0984140:five_prime_UTR 65.0%
AGGGTCGGCGCGTTTCATGG+CGG + chr6_4:27950660-27950679 Msa0984140:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 27950374 27954486 27950374 ID=Msa0984140;Name=Msa0984140
chr6_4 mRNA 27950374 27954486 27950374 ID=Msa0984140-mRNA-1;Parent=Msa0984140;Name=Msa0984140-mRNA-1;_AED=0.33;_eAED=0.37;_QI=555|0.6|0.83|1|0.2|0.16|6|387|66
chr6_4 exon 27950374 27950686 27950374 ID=Msa0984140-mRNA-1:exon:7867;Parent=Msa0984140-mRNA-1
chr6_4 exon 27950962 27951079 27950962 ID=Msa0984140-mRNA-1:exon:7868;Parent=Msa0984140-mRNA-1
chr6_4 exon 27951724 27951787 27951724 ID=Msa0984140-mRNA-1:exon:7869;Parent=Msa0984140-mRNA-1
chr6_4 exon 27953256 27953392 27953256 ID=Msa0984140-mRNA-1:exon:7870;Parent=Msa0984140-mRNA-1
chr6_4 exon 27953880 27953966 27953880 ID=Msa0984140-mRNA-1:exon:7871;Parent=Msa0984140-mRNA-1
chr6_4 exon 27954063 27954486 27954063 ID=Msa0984140-mRNA-1:exon:7872;Parent=Msa0984140-mRNA-1
chr6_4 five_prime_UTR 27950374 27950686 27950374 ID=Msa0984140-mRNA-1:five_prime_utr;Parent=Msa0984140-mRNA-1
chr6_4 five_prime_UTR 27950962 27951079 27950962 ID=Msa0984140-mRNA-1:five_prime_utr;Parent=Msa0984140-mRNA-1
chr6_4 five_prime_UTR 27951724 27951787 27951724 ID=Msa0984140-mRNA-1:five_prime_utr;Parent=Msa0984140-mRNA-1
chr6_4 five_prime_UTR 27953256 27953315 27953256 ID=Msa0984140-mRNA-1:five_prime_utr;Parent=Msa0984140-mRNA-1
chr6_4 CDS 27953316 27953392 27953316 ID=Msa0984140-mRNA-1:cds;Parent=Msa0984140-mRNA-1
chr6_4 CDS 27953880 27953966 27953880 ID=Msa0984140-mRNA-1:cds;Parent=Msa0984140-mRNA-1
chr6_4 CDS 27954063 27954099 27954063 ID=Msa0984140-mRNA-1:cds;Parent=Msa0984140-mRNA-1
chr6_4 three_prime_UTR 27954100 27954486 27954100 ID=Msa0984140-mRNA-1:three_prime_utr;Parent=Msa0984140-mRNA-1
Gene Sequence

>Msa0984140

ATGTCAAATGCTTGGTCTGGGTCTAAACTGTTTATTAATGATGATTCCATTGAGGAACTCAAACAATTTAAGGAAAGCTGCACTAAATGCACCAGGAAGGCTAAAACTCCAAATGGCCAATTTAAATGTGATTGTGGACAAGTTTTTGAACAGGCAATCCCAAGGTACAAATTTCCAATTGTAGGTCTTTTTATCAAGTAG
Protein sequence

>Msa0984140

MSNAWSGSKLFINDDSIEELKQFKESCTKCTRKAKTPNGQFKCDCGQVFEQAIPRYKFPIVGLFIK*