Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0436700 | Msa0645490 | 0.910376 | 2.007971e-82 | -8.615850e-47 |
| Msa0436700 | Msa0796700 | 0.809473 | 1.859928e-50 | -8.615850e-47 |
| Msa0436700 | Msa0984140 | 0.883746 | 3.456480e-71 | -8.615850e-47 |
| Msa0436700 | Msa1182420 | 0.878405 | 2.884541e-69 | -8.615850e-47 |
| Msa0336160 | Msa0436700 | 0.835173 | 1.958083e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTAATTCTATATGTAATT+TGG | 0.113702 | 3_2:-90451906 | Msa0436700:three_prime_UTR |
| TCCATCCATGTTGCATTAAT+TGG | 0.147680 | 3_2:+90452026 | None:intergenic |
| TGAGGAACTCAAACAATTTA+AGG | 0.163299 | 3_2:-90452866 | Msa0436700:CDS |
| GTCCACAATCACATTTAAAT+TGG | 0.209735 | 3_2:+90452313 | None:intergenic |
| ATTATATATATCAATGTATT+TGG | 0.214681 | 3_2:-90451812 | Msa0436700:three_prime_UTR |
| GTGAACTCCTTGAACATTTC+CGG | 0.239784 | 3_2:+90454188 | None:intergenic |
| TCCTTGTTTGTGTTTGTTGC+CGG | 0.322987 | 3_2:+90455180 | None:intergenic |
| TCACATTTAAATTGGCCATT+TGG | 0.332786 | 3_2:+90452321 | None:intergenic |
| CTCCAACAATGTCAAATTGC+AGG | 0.336874 | 3_2:-90452961 | Msa0436700:CDS |
| GACCAAGCATTTGACATTGT+TGG | 0.343423 | 3_2:+90452922 | None:intergenic |
| CAATGTCAAATTGCAGGCTT+GGG | 0.366731 | 3_2:-90452955 | Msa0436700:CDS |
| CATAGTGACAATTACAGAAT+TGG | 0.378131 | 3_2:+90451974 | None:intergenic |
| CAATCTGTTTCAGCTTGAAT+AGG | 0.382751 | 3_2:+90455245 | None:intergenic |
| ACAATGTCAAATGCTTGGTC+TGG | 0.403543 | 3_2:-90452919 | Msa0436700:CDS |
| AGCCTGCAATTTGACATTGT+TGG | 0.403841 | 3_2:+90452959 | None:intergenic |
| ACAATGTCAAATTGCAGGCT+TGG | 0.414903 | 3_2:-90452956 | Msa0436700:CDS |
| TTGCAAAACTTCTTCATGAC+CGG | 0.453391 | 3_2:-90455199 | Msa0436700:CDS |
| AGGTACAAATTTCCAATTGT+AGG | 0.463626 | 3_2:-90452171 | Msa0436700:CDS |
| AAATTGTTTGAGTTCCTCAA+TGG | 0.471669 | 3_2:+90452870 | None:intergenic |
| CTCCAACAATGTCAAATGCT+TGG | 0.473618 | 3_2:-90452924 | Msa0436700:CDS |
| CTATTCAAGCTGAAACAGAT+TGG | 0.478401 | 3_2:-90455244 | Msa0436700:CDS |
| TAGTGGTTAATGAAATCTGA+TGG | 0.484600 | 3_2:-90452089 | Msa0436700:three_prime_UTR |
| CAATGTCAAATGCTTGGTCT+GGG | 0.486270 | 3_2:-90452918 | Msa0436700:CDS |
| ATGATTTGATAAAATTAACT+TGG | 0.492727 | 3_2:+90452057 | None:intergenic |
| ATGAGAAAGAACATAAATAG+TGG | 0.495321 | 3_2:-90452106 | Msa0436700:three_prime_UTR |
| GTTTCAGCTTGAATAGGAGA+TGG | 0.499512 | 3_2:+90455251 | None:intergenic |
| TATTCAAGCTGAAACAGATT+GGG | 0.504544 | 3_2:-90455243 | Msa0436700:CDS |
| AATTTGACATTGTTGGAGAA+TGG | 0.515371 | 3_2:+90452966 | None:intergenic |
| TGAACATTTCCGGTGCACTA+AGG | 0.516804 | 3_2:+90454198 | None:intergenic |
| AGGAAGGCTAAAACTCCAAA+TGG | 0.517189 | 3_2:-90452336 | Msa0436700:CDS |
| TAGTGCACCGGAAATGTTCA+AGG | 0.520766 | 3_2:-90454195 | Msa0436700:CDS |
| TCCAATTAATGCAACATGGA+TGG | 0.520892 | 3_2:-90452027 | Msa0436700:three_prime_UTR |
| AAAAGTGTATAATAGTAAGT+AGG | 0.524753 | 3_2:+90453573 | None:intergenic |
| CATTTGACATTGTTGGAGCA+TGG | 0.525905 | 3_2:+90452929 | None:intergenic |
| TAATGCAACATGGATGGACT+TGG | 0.527685 | 3_2:-90452021 | Msa0436700:three_prime_UTR |
| TATTAATGATGATTCCATTG+AGG | 0.530317 | 3_2:-90452884 | Msa0436700:CDS |
| GGCCAATTTAAATGTGATTG+TGG | 0.541689 | 3_2:-90452315 | Msa0436700:CDS |
| TTTCAGCTTGAATAGGAGAT+GGG | 0.542088 | 3_2:+90455252 | None:intergenic |
| CTCTGAAAATTGTAGGCTTG+GGG | 0.549249 | 3_2:-90452991 | Msa0436700:intron |
| AACTCAAACAATTTAAGGAA+AGG | 0.573878 | 3_2:-90452861 | Msa0436700:intron |
| GCAGAGCAACCTTAGTGCAC+CGG | 0.586537 | 3_2:-90454207 | Msa0436700:intron |
| AGTGGTTAATGAAATCTGAT+GGG | 0.604425 | 3_2:-90452088 | Msa0436700:three_prime_UTR |
| CAAGCTGAAACAGATTGGGT+AGG | 0.611478 | 3_2:-90455239 | Msa0436700:CDS |
| ACCGGCAACAAACACAAACA+AGG | 0.627964 | 3_2:-90455181 | Msa0436700:CDS |
| TTGTCAGTAGCAGTTATGTG+TGG | 0.629146 | 3_2:-90455472 | None:intergenic |
| ACTCTCCAATTAATGCAACA+TGG | 0.635926 | 3_2:-90452031 | Msa0436700:three_prime_UTR |
| AATGTCAAATTGCAGGCTTG+GGG | 0.640848 | 3_2:-90452954 | Msa0436700:CDS |
| ACAGCTGCACTAAATGCACC+AGG | 0.652832 | 3_2:-90452356 | Msa0436700:intron |
| CACTTCTGTCAATGAGACTG+TGG | 0.662055 | 3_2:-90451997 | Msa0436700:three_prime_UTR |
| CTGCACTAAATGCACCAGGA+AGG | 0.665837 | 3_2:-90452352 | Msa0436700:CDS |
| AAATGTTCAAGGAGTTCACA+TGG | 0.681365 | 3_2:-90454184 | Msa0436700:intron |
| GGCAACAAACACAAACAAGG+AGG | 0.739402 | 3_2:-90455178 | Msa0436700:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATGAATAAAAAAAAAA+AGG | + | chr3_2:90452423-90452442 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTATGTTTAAT+TGG | + | chr3_2:90454393-90454412 | None:intergenic | 10.0% |
| !! | ATTATATATATCAATGTATT+TGG | - | chr3_2:90455413-90455432 | Msa0436700:intron | 10.0% |
| !! | TGAATAAAAAAAAAAAGGAA+GGG | + | chr3_2:90452418-90452437 | None:intergenic | 15.0% |
| !! | ATGAATAAAAAAAAAAAGGA+AGG | + | chr3_2:90452419-90452438 | None:intergenic | 15.0% |
| !!! | TTTTTATATATACATGTCAT+CGG | - | chr3_2:90452809-90452828 | Msa0436700:intron | 15.0% |
| !! | ATATATGTAAAATTGTTCTA+CGG | - | chr3_2:90453276-90453295 | Msa0436700:intron | 15.0% |
| !!! | CTTTATACAATATGAATTTT+TGG | - | chr3_2:90453512-90453531 | Msa0436700:intron | 15.0% |
| !!! | TACAAACTTTTTATTAAAGT+AGG | + | chr3_2:90453617-90453636 | None:intergenic | 15.0% |
| !! | TCTTGAAATAATAGAAAATT+TGG | + | chr3_2:90453724-90453743 | None:intergenic | 15.0% |
| !! | AATAAAAACTTTCATCTATT+AGG | + | chr3_2:90454073-90454092 | None:intergenic | 15.0% |
| !!! | TAATAGATGAAAGTTTTTAT+TGG | - | chr3_2:90454072-90454091 | Msa0436700:intron | 15.0% |
| !!! | CTTTTTATTTATAGCTTTTT+GGG | - | chr3_2:90454567-90454586 | Msa0436700:intron | 15.0% |
| !! | CTAAATTAATAATAGAGAAT+TGG | + | chr3_2:90454628-90454647 | None:intergenic | 15.0% |
| !! | CTGTTATTATTATTATTACA+AGG | - | chr3_2:90454767-90454786 | Msa0436700:intron | 15.0% |
| !! | ATGATTTGATAAAATTAACT+TGG | + | chr3_2:90455171-90455190 | None:intergenic | 15.0% |
| !! | TACTAATTCTATATGTAATT+TGG | - | chr3_2:90455319-90455338 | Msa0436700:intron | 15.0% |
| !!! | TTTTTTATTGATAAACTCAT+TGG | - | chr3_2:90455369-90455388 | Msa0436700:intron | 15.0% |
| !!! | TTGTTTTTATCTACTTTTGT+AGG | - | chr3_2:90451929-90451948 | Msa0436700:three_prime_UTR | 20.0% |
| !!! | ATTCTGAAATTGAGAATTAA+GGG | + | chr3_2:90452096-90452115 | None:intergenic | 20.0% |
| !!! | TATTCTGAAATTGAGAATTA+AGG | + | chr3_2:90452097-90452116 | None:intergenic | 20.0% |
| !!! | ATATGATTTTGTTCTTTCAA+AGG | - | chr3_2:90452114-90452133 | Msa0436700:three_prime_UTR | 20.0% |
| !! | TCTGATTAAAACAATAAAGA+AGG | + | chr3_2:90452696-90452715 | None:intergenic | 20.0% |
| !!! | TATTTCTAAGTTTTCTCAAA+AGG | - | chr3_2:90452724-90452743 | Msa0436700:intron | 20.0% |
| !! | TACAAATATTTGCTTTACTT+TGG | + | chr3_2:90452777-90452796 | None:intergenic | 20.0% |
| !! | TAAAGCAAATATTTGTAGTA+TGG | - | chr3_2:90452780-90452799 | Msa0436700:intron | 20.0% |
| !! | AACGATGTAAATCAAAATAA+AGG | + | chr3_2:90452869-90452888 | None:intergenic | 20.0% |
| !!! | TATTTTGATTTACATCGTTA+TGG | - | chr3_2:90452870-90452889 | Msa0436700:CDS | 20.0% |
| !! | CATATTATAAAAAAACATGC+AGG | + | chr3_2:90452999-90453018 | None:intergenic | 20.0% |
| !! | CAAATAAAACATATTTCCTA+TGG | - | chr3_2:90453385-90453404 | Msa0436700:intron | 20.0% |
| !!! | AAAAGTGTATAATAGTAAGT+AGG | + | chr3_2:90453655-90453674 | None:intergenic | 20.0% |
| !! | GAATTTCAAATTCGAATTTA+TGG | - | chr3_2:90453927-90453946 | Msa0436700:intron | 20.0% |
| !!! | ACAATTTTCAGAGTTTTTAA+TGG | + | chr3_2:90454227-90454246 | None:intergenic | 20.0% |
| !!! | TTAAAAACTCTGAAAATTGT+AGG | - | chr3_2:90454227-90454246 | Msa0436700:intron | 20.0% |
| !! | CCAAAAAGCTATAAATAAAA+AGG | + | chr3_2:90454569-90454588 | None:intergenic | 20.0% |
| !!! | CCTTTTTATTTATAGCTTTT+TGG | - | chr3_2:90454566-90454585 | Msa0436700:intron | 20.0% |
| !!! | CTTTTTACTTGTTCAATTTA+TGG | + | chr3_2:90454714-90454733 | None:intergenic | 20.0% |
| !!! | CATGTATATTTTTTTACCTT+GGG | + | chr3_2:90454957-90454976 | None:intergenic | 20.0% |
| !!! | ACATGTATATTTTTTTACCT+TGG | + | chr3_2:90454958-90454977 | None:intergenic | 20.0% |
| !! | GAAGTTTTGCAAATTCTTTT+TGG | + | chr3_2:90452018-90452037 | None:intergenic | 25.0% |
| ! | ACACAAAACATGAGAAAAAA+TGG | + | chr3_2:90452149-90452168 | None:intergenic | 25.0% |
| ! | TCAGATTTATTTGAAAAGAG+AGG | - | chr3_2:90452555-90452574 | Msa0436700:intron | 25.0% |
| ! | CAGATTTATTTGAAAAGAGA+GGG | - | chr3_2:90452556-90452575 | Msa0436700:intron | 25.0% |
| ! | CTGAACATACTCATAATAAA+AGG | + | chr3_2:90453095-90453114 | None:intergenic | 25.0% |
| !! | TGCTATTAGTATTTCTATCT+TGG | - | chr3_2:90453116-90453135 | Msa0436700:intron | 25.0% |
| ! | GTGATTTCATTTATGAATGA+TGG | - | chr3_2:90453138-90453157 | Msa0436700:intron | 25.0% |
| ! | ACAAAACTGACATAATAGTT+TGG | - | chr3_2:90453227-90453246 | Msa0436700:intron | 25.0% |
| ! | CCATAAGAATTTAACCTAAA+CGG | + | chr3_2:90453465-90453484 | None:intergenic | 25.0% |
| ! | ACATGGTATGAAATATAACA+AGG | - | chr3_2:90453565-90453584 | Msa0436700:CDS | 25.0% |
| !! | CATATTTGTGAATTTTGAAC+TGG | + | chr3_2:90453787-90453806 | None:intergenic | 25.0% |
| ! | TGCAATAAAAAACAACAACA+TGG | + | chr3_2:90453863-90453882 | None:intergenic | 25.0% |
| !! | TATCAGAAGAAAGTTTTCAT+TGG | - | chr3_2:90453958-90453977 | Msa0436700:intron | 25.0% |
| !! | TTTTCATTGGTACTTATAAG+AGG | - | chr3_2:90453971-90453990 | Msa0436700:intron | 25.0% |
| ! | TTTCATTGGTACTTATAAGA+GGG | - | chr3_2:90453972-90453991 | Msa0436700:intron | 25.0% |
| ! | ATAGTTTATACTAAACCTGA+GGG | + | chr3_2:90454179-90454198 | None:intergenic | 25.0% |
| ! | AATAGTTTATACTAAACCTG+AGG | + | chr3_2:90454180-90454199 | None:intergenic | 25.0% |
| !! | GAGTTTTTAATGGTTGTAAA+TGG | + | chr3_2:90454217-90454236 | None:intergenic | 25.0% |
| ! | TATTAATGATGATTCCATTG+AGG | - | chr3_2:90454341-90454360 | Msa0436700:intron | 25.0% |
| ! | AACTCAAACAATTTAAGGAA+AGG | - | chr3_2:90454364-90454383 | Msa0436700:intron | 25.0% |
| ! | AGACTTAGAATTGTGTTAAT+TGG | - | chr3_2:90454675-90454694 | Msa0436700:intron | 25.0% |
| ! | TTGATAAAAAGACCTACAAT+TGG | + | chr3_2:90455069-90455088 | None:intergenic | 25.0% |
| ! | ATGAGAAAGAACATAAATAG+TGG | - | chr3_2:90455119-90455138 | Msa0436700:intron | 25.0% |
| !! | GTAATTGTCACTATGTTTTA+AGG | - | chr3_2:90455259-90455278 | Msa0436700:CDS | 25.0% |
| !!! | TATGTTTTAAGGACTAACTT+GGG | - | chr3_2:90455270-90455289 | Msa0436700:CDS | 25.0% |
| ACAGAAAACTAAAATGCAGA+GGG | + | chr3_2:90451831-90451850 | None:intergenic | 30.0% | |
| AACAGAAAACTAAAATGCAG+AGG | + | chr3_2:90451832-90451851 | None:intergenic | 30.0% | |
| ! | TAGTTTTCTGTTTGTGAACT+TGG | - | chr3_2:90451840-90451859 | Msa0436700:three_prime_UTR | 30.0% |
| TATTCAAGCTGAAACAGATT+GGG | - | chr3_2:90451982-90452001 | Msa0436700:three_prime_UTR | 30.0% | |
| CTTGCATGTTAGTTGAAATT+AGG | + | chr3_2:90452591-90452610 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGAAATCTTTTCA+TGG | - | chr3_2:90452743-90452762 | Msa0436700:intron | 30.0% |
| ! | AGGAGTTGAAATCTTTTCAT+GGG | - | chr3_2:90452744-90452763 | Msa0436700:intron | 30.0% |
| ! | TGACATAATAGTTTGGAACT+TGG | - | chr3_2:90453234-90453253 | Msa0436700:intron | 30.0% |
| ! | GACATAATAGTTTGGAACTT+GGG | - | chr3_2:90453235-90453254 | Msa0436700:intron | 30.0% |
| ATGTAAAATTGTTCTACGGA+AGG | - | chr3_2:90453280-90453299 | Msa0436700:intron | 30.0% | |
| TGTAAAATTGTTCTACGGAA+GGG | - | chr3_2:90453281-90453300 | Msa0436700:intron | 30.0% | |
| TTAGAAGCAGGTTAATTTAG+TGG | + | chr3_2:90453350-90453369 | None:intergenic | 30.0% | |
| GGCAATCTAGTACTATAAAA+CGG | + | chr3_2:90453444-90453463 | None:intergenic | 30.0% | |
| ! | CCGTTTAGGTTAAATTCTTA+TGG | - | chr3_2:90453462-90453481 | Msa0436700:intron | 30.0% |
| TTATGGAACGACAATAGATA+TGG | - | chr3_2:90453479-90453498 | Msa0436700:intron | 30.0% | |
| ! | TTTCAAGAATCCTTTTATGC+TGG | - | chr3_2:90453736-90453755 | Msa0436700:intron | 30.0% |
| TGAAAACTTTCTTCTGATAC+AGG | + | chr3_2:90453957-90453976 | None:intergenic | 30.0% | |
| ! | GGTGAATTTAGGACTAAATA+GGG | - | chr3_2:90454107-90454126 | Msa0436700:intron | 30.0% |
| ! | GTGAATTTAGGACTAAATAG+GGG | - | chr3_2:90454108-90454127 | Msa0436700:intron | 30.0% |
| AATTTGACATTGTTGGAGAA+TGG | + | chr3_2:90454262-90454281 | None:intergenic | 30.0% | |
| ! | AAATTGTTTGAGTTCCTCAA+TGG | + | chr3_2:90454358-90454377 | None:intergenic | 30.0% |
| TGAGGAACTCAAACAATTTA+AGG | - | chr3_2:90454359-90454378 | Msa0436700:intron | 30.0% | |
| ! | ACAAGCATCACAATTTTCAA+AGG | - | chr3_2:90454474-90454493 | Msa0436700:intron | 30.0% |
| CAAACAATAGCTTCAATAAC+AGG | + | chr3_2:90454503-90454522 | None:intergenic | 30.0% | |
| TTGAAGCTATTGTTTGTGAA+AGG | - | chr3_2:90454507-90454526 | Msa0436700:intron | 30.0% | |
| TCACATTTAAATTGGCCATT+TGG | + | chr3_2:90454907-90454926 | None:intergenic | 30.0% | |
| GTCCACAATCACATTTAAAT+TGG | + | chr3_2:90454915-90454934 | None:intergenic | 30.0% | |
| TATACATGTCTTTGTGCTTA+TGG | - | chr3_2:90454969-90454988 | Msa0436700:intron | 30.0% | |
| ! | ACTTGATTCGATAATTGACA+TGG | - | chr3_2:90455014-90455033 | Msa0436700:intron | 30.0% |
| AGGTACAAATTTCCAATTGT+AGG | - | chr3_2:90455054-90455073 | Msa0436700:intron | 30.0% | |
| ! | TGTAGGTCTTTTTATCAAGT+AGG | - | chr3_2:90455071-90455090 | Msa0436700:intron | 30.0% |
| TAGTGGTTAATGAAATCTGA+TGG | - | chr3_2:90455136-90455155 | Msa0436700:intron | 30.0% | |
| AGTGGTTAATGAAATCTGAT+GGG | - | chr3_2:90455137-90455156 | Msa0436700:intron | 30.0% | |
| CATAGTGACAATTACAGAAT+TGG | + | chr3_2:90455254-90455273 | None:intergenic | 30.0% | |
| !!! | CTATGTTTTAAGGACTAACT+TGG | - | chr3_2:90455269-90455288 | Msa0436700:CDS | 30.0% |
| AATCGCTTGATTCTTTGTTC+TGG | - | chr3_2:90451869-90451888 | Msa0436700:three_prime_UTR | 35.0% | |
| ATCGCTTGATTCTTTGTTCT+GGG | - | chr3_2:90451870-90451889 | Msa0436700:three_prime_UTR | 35.0% | |
| ! | TTGATTCTTTGTTCTGGGTA+TGG | - | chr3_2:90451875-90451894 | Msa0436700:three_prime_UTR | 35.0% |
| TTTCAGCTTGAATAGGAGAT+GGG | + | chr3_2:90451976-90451995 | None:intergenic | 35.0% | |
| CAATCTGTTTCAGCTTGAAT+AGG | + | chr3_2:90451983-90452002 | None:intergenic | 35.0% | |
| CTATTCAAGCTGAAACAGAT+TGG | - | chr3_2:90451981-90452000 | Msa0436700:three_prime_UTR | 35.0% | |
| TTGCAAAACTTCTTCATGAC+CGG | - | chr3_2:90452026-90452045 | Msa0436700:three_prime_UTR | 35.0% | |
| ATTTACCAATCTATGTGTGC+AGG | + | chr3_2:90452504-90452523 | None:intergenic | 35.0% | |
| AAGCAATAAGCAGATATGTG+TGG | + | chr3_2:90452666-90452685 | None:intergenic | 35.0% | |
| TTTACATCGTTATGGACCTA+TGG | - | chr3_2:90452878-90452897 | Msa0436700:CDS | 35.0% | |
| AAATGTTCAAGGAGTTCACA+TGG | - | chr3_2:90453041-90453060 | Msa0436700:intron | 35.0% | |
| ATGGTTGAAGTTGCTATCAT+TGG | - | chr3_2:90453318-90453337 | Msa0436700:intron | 35.0% | |
| ATTAACCTGCTTCTAATGCT+TGG | - | chr3_2:90453354-90453373 | Msa0436700:intron | 35.0% | |
| ! | ATAGTACTAGATTGCCGTTT+AGG | - | chr3_2:90453448-90453467 | Msa0436700:intron | 35.0% |
| TTTGGATTGCCTTTGTCATT+AGG | - | chr3_2:90453530-90453549 | Msa0436700:intron | 35.0% | |
| AACCTAAGTCCTAATGACAA+AGG | + | chr3_2:90453542-90453561 | None:intergenic | 35.0% | |
| ! | TTAGGACTTAGGTTGTTACA+TGG | - | chr3_2:90453548-90453567 | Msa0436700:intron | 35.0% |
| ! | GAATTTTGAACTGGCAGAAA+GGG | + | chr3_2:90453778-90453797 | None:intergenic | 35.0% |
| ! | TGAATTTTGAACTGGCAGAA+AGG | + | chr3_2:90453779-90453798 | None:intergenic | 35.0% |
| GCATCATTTGAAGGATTTGA+AGG | + | chr3_2:90453841-90453860 | None:intergenic | 35.0% | |
| AACAACATGGCATCATTTGA+AGG | + | chr3_2:90453850-90453869 | None:intergenic | 35.0% | |
| !! | TTTTTATTGGTGCTTACGAG+AGG | - | chr3_2:90454085-90454104 | Msa0436700:intron | 35.0% |
| !! | TTTTATTGGTGCTTACGAGA+GGG | - | chr3_2:90454086-90454105 | Msa0436700:intron | 35.0% |
| ! | GGGTGAATTTAGGACTAAAT+AGG | - | chr3_2:90454106-90454125 | Msa0436700:intron | 35.0% |
| ! | AACTCTGAAAATTGTAGGCT+TGG | - | chr3_2:90454232-90454251 | Msa0436700:intron | 35.0% |
| ! | ACTCTGAAAATTGTAGGCTT+GGG | - | chr3_2:90454233-90454252 | Msa0436700:intron | 35.0% |
| CATCATGACTGAACTTTACA+AGG | - | chr3_2:90454825-90454844 | Msa0436700:intron | 35.0% | |
| GAACTTTACAAGGTCATTCA+CGG | - | chr3_2:90454835-90454854 | Msa0436700:intron | 35.0% | |
| GGCCAATTTAAATGTGATTG+TGG | - | chr3_2:90454910-90454929 | Msa0436700:intron | 35.0% | |
| ! | TTGTGGACAAGTTTTTGAAC+AGG | - | chr3_2:90454927-90454946 | Msa0436700:intron | 35.0% |
| TGTGCTTATGGATATCATGA+TGG | - | chr3_2:90454981-90455000 | Msa0436700:intron | 35.0% | |
| ! | TGGTAGTTTCTTTTGTTCAC+AGG | - | chr3_2:90455034-90455053 | Msa0436700:intron | 35.0% |
| ACTCTCCAATTAATGCAACA+TGG | - | chr3_2:90455194-90455213 | Msa0436700:CDS | 35.0% | |
| TCCAATTAATGCAACATGGA+TGG | - | chr3_2:90455198-90455217 | Msa0436700:CDS | 35.0% | |
| TCCATCCATGTTGCATTAAT+TGG | + | chr3_2:90455202-90455221 | None:intergenic | 35.0% | |
| !! | GGAATAATCGAAGCATTTTC+TGG | - | chr3_2:90455390-90455409 | Msa0436700:intron | 35.0% |
| GTTTCAGCTTGAATAGGAGA+TGG | + | chr3_2:90451977-90451996 | None:intergenic | 40.0% | |
| ! | TCCTTGTTTGTGTTTGTTGC+CGG | + | chr3_2:90452048-90452067 | None:intergenic | 40.0% |
| AGGTGATGCTAATGTTGATG+AGG | + | chr3_2:90452386-90452405 | None:intergenic | 40.0% | |
| TCATCAACATTAGCATCACC+TGG | - | chr3_2:90452385-90452404 | Msa0436700:intron | 40.0% | |
| CAATCTATGTGTGCAGGATA+CGG | + | chr3_2:90452498-90452517 | None:intergenic | 40.0% | |
| GTGAACTCCTTGAACATTTC+CGG | + | chr3_2:90453040-90453059 | None:intergenic | 40.0% | |
| AAAATTGTTCTACGGAAGGG+AGG | - | chr3_2:90453284-90453303 | Msa0436700:intron | 40.0% | |
| AGTGAAAGGGTTGAATCCAT+AGG | + | chr3_2:90453404-90453423 | None:intergenic | 40.0% | |
| TATAAAACGGCTGAGACAGT+GGG | + | chr3_2:90453431-90453450 | None:intergenic | 40.0% | |
| TGCCTTTGTCATTAGGACTT+AGG | - | chr3_2:90453537-90453556 | Msa0436700:intron | 40.0% | |
| GCAGTAAAGTCCAGCATAAA+AGG | + | chr3_2:90453749-90453768 | None:intergenic | 40.0% | |
| GAGAACTAAGCCTAACTAGA+GGG | - | chr3_2:90453897-90453916 | Msa0436700:intron | 40.0% | |
| AGGGTGAATTTCACATGAAG+TGG | - | chr3_2:90453991-90454010 | Msa0436700:intron | 40.0% | |
| GTTTATACTAAACCTGAGGG+TGG | + | chr3_2:90454176-90454195 | None:intergenic | 40.0% | |
| ! | CTCTGAAAATTGTAGGCTTG+GGG | - | chr3_2:90454234-90454253 | Msa0436700:intron | 40.0% |
| CTCCAACAATGTCAAATTGC+AGG | - | chr3_2:90454264-90454283 | Msa0436700:intron | 40.0% | |
| AGCCTGCAATTTGACATTGT+TGG | + | chr3_2:90454269-90454288 | None:intergenic | 40.0% | |
| ACAATGTCAAATTGCAGGCT+TGG | - | chr3_2:90454269-90454288 | Msa0436700:intron | 40.0% | |
| CAATGTCAAATTGCAGGCTT+GGG | - | chr3_2:90454270-90454289 | Msa0436700:intron | 40.0% | |
| AATGTCAAATTGCAGGCTTG+GGG | - | chr3_2:90454271-90454290 | Msa0436700:intron | 40.0% | |
| CATTTGACATTGTTGGAGCA+TGG | + | chr3_2:90454299-90454318 | None:intergenic | 40.0% | |
| CTCCAACAATGTCAAATGCT+TGG | - | chr3_2:90454301-90454320 | Msa0436700:intron | 40.0% | |
| GACCAAGCATTTGACATTGT+TGG | + | chr3_2:90454306-90454325 | None:intergenic | 40.0% | |
| ACAATGTCAAATGCTTGGTC+TGG | - | chr3_2:90454306-90454325 | Msa0436700:intron | 40.0% | |
| CAATGTCAAATGCTTGGTCT+GGG | - | chr3_2:90454307-90454326 | Msa0436700:intron | 40.0% | |
| AGCTATTGTTTGTGAAAGGC+AGG | - | chr3_2:90454511-90454530 | Msa0436700:intron | 40.0% | |
| !! | TCAGAGTGTGATTTTCAAGC+AGG | - | chr3_2:90454602-90454621 | Msa0436700:intron | 40.0% |
| TTTACAAGGTCATTCACGGT+TGG | - | chr3_2:90454839-90454858 | Msa0436700:intron | 40.0% | |
| !! | ATTTGGAGTTTTAGCCTTCC+TGG | + | chr3_2:90454890-90454909 | None:intergenic | 40.0% |
| AGGAAGGCTAAAACTCCAAA+TGG | - | chr3_2:90454889-90454908 | Msa0436700:intron | 40.0% | |
| ! | TTTTTGAACAGGCAATCCCA+AGG | - | chr3_2:90454938-90454957 | Msa0436700:intron | 40.0% |
| ! | TAATGCAACATGGATGGACT+TGG | - | chr3_2:90455204-90455223 | Msa0436700:CDS | 40.0% |
| CAAGCTGAAACAGATTGGGT+AGG | - | chr3_2:90451986-90452005 | Msa0436700:three_prime_UTR | 45.0% | |
| ACCGGCAACAAACACAAACA+AGG | - | chr3_2:90452044-90452063 | Msa0436700:three_prime_UTR | 45.0% | |
| GGCAACAAACACAAACAAGG+AGG | - | chr3_2:90452047-90452066 | Msa0436700:three_prime_UTR | 45.0% | |
| !! | AAAAGGAAGGGCATCAAACC+AGG | + | chr3_2:90452406-90452425 | None:intergenic | 45.0% |
| CGTATCCTGCACACATAGAT+TGG | - | chr3_2:90452496-90452515 | Msa0436700:intron | 45.0% | |
| CTAGTCGTCTACATCACCAT+AGG | + | chr3_2:90452897-90452916 | None:intergenic | 45.0% | |
| TGAACATTTCCGGTGCACTA+AGG | + | chr3_2:90453030-90453049 | None:intergenic | 45.0% | |
| TAGTGCACCGGAAATGTTCA+AGG | - | chr3_2:90453030-90453049 | Msa0436700:intron | 45.0% | |
| AAGGGAGGAAAGTGGCATAA+TGG | - | chr3_2:90453299-90453318 | Msa0436700:intron | 45.0% | |
| TCTCACCAAGCATTAGAAGC+AGG | + | chr3_2:90453362-90453381 | None:intergenic | 45.0% | |
| GACAGTGGGATACAGTGAAA+GGG | + | chr3_2:90453417-90453436 | None:intergenic | 45.0% | |
| AGACAGTGGGATACAGTGAA+AGG | + | chr3_2:90453418-90453437 | None:intergenic | 45.0% | |
| CTATAAAACGGCTGAGACAG+TGG | + | chr3_2:90453432-90453451 | None:intergenic | 45.0% | |
| TTATTGCACGTCACATGCAG+TGG | - | chr3_2:90453875-90453894 | Msa0436700:intron | 45.0% | |
| GGAGAACTAAGCCTAACTAG+AGG | - | chr3_2:90453896-90453915 | Msa0436700:intron | 45.0% | |
| TTCCTCAAGTCCCTCTAGTT+AGG | + | chr3_2:90453910-90453929 | None:intergenic | 45.0% | |
| GCTTACGAGAGGGTGAATTT+AGG | - | chr3_2:90454096-90454115 | Msa0436700:intron | 45.0% | |
| GCTAAAATTAAGCCACCCTC+AGG | - | chr3_2:90454161-90454180 | Msa0436700:intron | 45.0% | |
| CACTTCTGTCAATGAGACTG+TGG | - | chr3_2:90455228-90455247 | Msa0436700:CDS | 45.0% | |
| CGATGGAGCAAACACACACA+AGG | + | chr3_2:90451802-90451821 | None:intergenic | 50.0% | |
| AATGCAGAGGGATGAGACGA+TGG | + | chr3_2:90451819-90451838 | None:intergenic | 50.0% | |
| !! | CAGGATACGGACTGGTCTTA+TGG | + | chr3_2:90452485-90452504 | None:intergenic | 50.0% |
| TATGTGTGCAGGATACGGAC+TGG | + | chr3_2:90452493-90452512 | None:intergenic | 50.0% | |
| TTCTACGGAAGGGAGGAAAG+TGG | - | chr3_2:90453291-90453310 | Msa0436700:intron | 50.0% | |
| AGCCTAACTAGAGGGACTTG+AGG | - | chr3_2:90453905-90453924 | Msa0436700:intron | 50.0% | |
| ACAGCTGCACTAAATGCACC+AGG | - | chr3_2:90454869-90454888 | Msa0436700:intron | 50.0% | |
| CTGCACTAAATGCACCAGGA+AGG | - | chr3_2:90454873-90454892 | Msa0436700:intron | 50.0% | |
| GCAGAGCAACCTTAGTGCAC+CGG | - | chr3_2:90453018-90453037 | Msa0436700:intron | 55.0% | |
| GAGAACCAAGCCTCGCTAGA+GGG | - | chr3_2:90454013-90454032 | Msa0436700:intron | 55.0% | |
| GGAGAACCAAGCCTCGCTAG+AGG | - | chr3_2:90454012-90454031 | Msa0436700:intron | 60.0% | |
| CAAGTCCCTCTAGCGAGGCT+TGG | + | chr3_2:90454021-90454040 | None:intergenic | 60.0% | |
| AGCCTCGCTAGAGGGACTTG+AGG | - | chr3_2:90454021-90454040 | Msa0436700:intron | 60.0% | |
| CTCCTCAAGTCCCTCTAGCG+AGG | + | chr3_2:90454026-90454045 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 90451768 | 90455479 | 90451768 | ID=Msa0436700;Name=Msa0436700 |
| chr3_2 | mRNA | 90451768 | 90455479 | 90451768 | ID=Msa0436700-mRNA-1;Parent=Msa0436700;Name=Msa0436700-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.71|1|0.5|0.71|7|387|160 |
| chr3_2 | exon | 90451768 | 90452191 | 90451768 | ID=Msa0436700-mRNA-1:exon:26866;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90452288 | 90452374 | 90452288 | ID=Msa0436700-mRNA-1:exon:26865;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90452862 | 90452998 | 90452862 | ID=Msa0436700-mRNA-1:exon:26864;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90453554 | 90453609 | 90453554 | ID=Msa0436700-mRNA-1:exon:26863;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90454185 | 90454225 | 90454185 | ID=Msa0436700-mRNA-1:exon:26862;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90455179 | 90455296 | 90455179 | ID=Msa0436700-mRNA-1:exon:26861;Parent=Msa0436700-mRNA-1 |
| chr3_2 | exon | 90455473 | 90455479 | 90455473 | ID=Msa0436700-mRNA-1:exon:26860;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90455473 | 90455479 | 90455473 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90455179 | 90455296 | 90455179 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90454185 | 90454225 | 90454185 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90453554 | 90453609 | 90453554 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90452862 | 90452998 | 90452862 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90452288 | 90452374 | 90452288 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | CDS | 90452155 | 90452191 | 90452155 | ID=Msa0436700-mRNA-1:cds;Parent=Msa0436700-mRNA-1 |
| chr3_2 | three_prime_UTR | 90451768 | 90452154 | 90451768 | ID=Msa0436700-mRNA-1:three_prime_utr;Parent=Msa0436700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
