Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337440 | XP_013465131.1 | 95.437 | 504 | 8 | 1 | 1 | 489 | 1 | 504 | 0.0 | 975 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337440 | sp|Q9FKW0|RNG1A_ARATH | 48.349 | 424 | 177 | 13 | 96 | 488 | 107 | 519 | 2.27e-110 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0260780 | Msa0337440 | 0.834067 | 3.714242e-56 | -8.615850e-47 |
| Msa0337440 | Msa0474520 | 0.803294 | 3.733415e-49 | -8.615850e-47 |
| Msa0337440 | Msa0681270 | 0.807026 | 6.179744e-50 | -8.615850e-47 |
| Msa0337440 | Msa0806790 | 0.815660 | 8.251897e-52 | -8.615850e-47 |
| Msa0337440 | Msa0966400 | 0.801057 | 1.077441e-48 | -8.615850e-47 |
| Msa0337440 | Msa1075650 | 0.806997 | 6.267575e-50 | -8.615850e-47 |
| Msa0337440 | Msa1102220 | 0.835669 | 1.467109e-56 | -8.615850e-47 |
| Msa0337440 | Msa1119940 | 0.813459 | 2.532108e-51 | -8.615850e-47 |
| Msa0337440 | Msa1190920 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0337440 | Msa1392880 | 0.800207 | 1.605796e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337440 | MtrunA17_Chr2g0324751 | 95.437 | 504 | 8 | 1 | 1 | 489 | 1 | 504 | 0.0 | 975 |
| Msa0337440 | MtrunA17_Chr4g0046901 | 42.672 | 464 | 179 | 10 | 54 | 489 | 27 | 431 | 3.34e-104 | 318 |
| Msa0337440 | MtrunA17_Chr4g0028811 | 76.364 | 55 | 13 | 0 | 139 | 193 | 1 | 55 | 1.02e-25 | 100 |
| Msa0337440 | MtrunA17_Chr6g0481531 | 56.061 | 66 | 29 | 0 | 154 | 219 | 1 | 66 | 2.17e-19 | 84.3 |
| Msa0337440 | MtrunA17_Chr4g0048301 | 48.438 | 64 | 26 | 1 | 138 | 194 | 14 | 77 | 1.05e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337440 | AT5G44280.1 | 48.349 | 424 | 177 | 13 | 96 | 488 | 107 | 519 | 2.30e-111 | 340 |
| Msa0337440 | AT5G44280.3 | 49.136 | 405 | 166 | 13 | 114 | 488 | 3 | 397 | 5.59e-110 | 332 |
| Msa0337440 | AT1G03770.3 | 43.011 | 465 | 228 | 9 | 45 | 488 | 11 | 459 | 1.55e-98 | 305 |
| Msa0337440 | AT1G03770.1 | 43.197 | 463 | 228 | 9 | 45 | 488 | 11 | 457 | 5.25e-98 | 303 |
| Msa0337440 | AT1G03770.2 | 42.463 | 471 | 228 | 10 | 45 | 488 | 11 | 465 | 6.60e-96 | 298 |
| Msa0337440 | AT1G03770.6 | 46.335 | 382 | 186 | 7 | 112 | 488 | 1 | 368 | 6.56e-93 | 287 |
| Msa0337440 | AT1G03770.4 | 46.335 | 382 | 186 | 7 | 112 | 488 | 1 | 368 | 6.56e-93 | 287 |
| Msa0337440 | AT5G44280.2 | 42.290 | 428 | 200 | 15 | 96 | 488 | 107 | 522 | 1.35e-83 | 268 |
| Msa0337440 | AT1G03770.5 | 44.225 | 355 | 179 | 7 | 139 | 488 | 1 | 341 | 4.52e-77 | 245 |
Find 110 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCATACTTCTCAATATT+TGG | 0.065158 | 2_4:-57481949 | None:intergenic |
| TCTGAGGCATTTATATTTAT+TGG | 0.152716 | 2_4:+57483948 | Msa0337440:exon |
| GATAACTTATTCACTTTAAT+TGG | 0.166274 | 2_4:-57484079 | None:intergenic |
| GGCATTTATATTTATTGGTT+TGG | 0.218289 | 2_4:+57483953 | Msa0337440:three_prime_UTR |
| ATTAAAATTTAGTATACTTT+AGG | 0.241904 | 2_4:-57484101 | None:intergenic |
| TCTGAAGAAAATGAGGAAAA+TGG | 0.264844 | 2_4:+57482543 | Msa0337440:CDS |
| GCATTTATATTTATTGGTTT+GGG | 0.271515 | 2_4:+57483954 | Msa0337440:three_prime_UTR |
| GCACAATGTGTGCGGCAAGC+AGG | 0.325018 | 2_4:-57481868 | None:intergenic |
| TCATCTCATGTTCGTTTCTC+TGG | 0.325095 | 2_4:+57483038 | Msa0337440:CDS |
| TAAGAAAACAAGAACTGTTA+TGG | 0.327255 | 2_4:+57481630 | Msa0337440:CDS |
| GAGAAAATCGAGGAGCTTCT+AGG | 0.334537 | 2_4:+57482721 | Msa0337440:CDS |
| TTGGATATAGAGTAGCAATA+AGG | 0.342425 | 2_4:-57481930 | None:intergenic |
| AAACATTGACCTGCTTATTT+CGG | 0.344036 | 2_4:-57482109 | None:intergenic |
| TATTTATTGGTTTGGGTGGC+AGG | 0.345234 | 2_4:+57483961 | Msa0337440:three_prime_UTR |
| ACTCGGGTAAGGAACGCTTC+TGG | 0.345928 | 2_4:-57478350 | None:intergenic |
| CTCGGGTAAGGAACGCTTCT+GGG | 0.349317 | 2_4:-57478349 | None:intergenic |
| CAAAAGCTAGAAAGCTTACT+TGG | 0.360216 | 2_4:+57482751 | Msa0337440:CDS |
| GTTGAGATACTGGCAGTTAA+AGG | 0.360477 | 2_4:+57483517 | Msa0337440:CDS |
| TTCAGAGTCAGAGGATTCAT+TGG | 0.362297 | 2_4:-57478795 | None:intergenic |
| GCAATAAGGGCATCGTAGTT+TGG | 0.366494 | 2_4:-57481916 | None:intergenic |
| AATGAAAGAGACTCATCTTC+TGG | 0.384905 | 2_4:+57482570 | Msa0337440:CDS |
| ACATATACCTCCTAAAATAT+TGG | 0.400642 | 2_4:+57484180 | Msa0337440:three_prime_UTR |
| TTTCGGAGTAACACAAGATA+TGG | 0.404440 | 2_4:+57482786 | Msa0337440:CDS |
| TTCTTCATCTTCCATTGACT+CGG | 0.410068 | 2_4:-57478367 | None:intergenic |
| CATCTTCCTCTTGTTCGAGT+TGG | 0.425056 | 2_4:-57478455 | None:intergenic |
| TGGATATAGAGTAGCAATAA+GGG | 0.426431 | 2_4:-57481929 | None:intergenic |
| TGGAAGCATAGAAAGTGATA+TGG | 0.432789 | 2_4:+57482689 | Msa0337440:CDS |
| TGCTAGTCAGACTCCTTTGA+CGG | 0.433213 | 2_4:+57483486 | Msa0337440:CDS |
| CTTTCTATGCTTCCACCATC+AGG | 0.449616 | 2_4:-57482681 | None:intergenic |
| ATCCTTGAATATCACTAGCT+TGG | 0.455511 | 2_4:-57482521 | None:intergenic |
| ACGAGGATCTCACTTCATAA+AGG | 0.459351 | 2_4:-57483128 | None:intergenic |
| CTCTCAGCCCTCATCGTCAA+TGG | 0.465700 | 2_4:+57482653 | Msa0337440:CDS |
| TATTGAGAAGTATGAGGAAG+AGG | 0.469487 | 2_4:+57481954 | Msa0337440:CDS |
| GGTTGAAGAAGTTGAGATAC+TGG | 0.470297 | 2_4:+57483507 | Msa0337440:CDS |
| ATCTTCCATTGACTCGGGTA+AGG | 0.473644 | 2_4:-57478361 | None:intergenic |
| ACAAGATATGGCAGTGGTGG+TGG | 0.479840 | 2_4:+57482798 | Msa0337440:CDS |
| GCGTTCCTTACCCGAGTCAA+TGG | 0.485427 | 2_4:+57478356 | Msa0337440:CDS |
| GACTCATCTTCTGGTGATGA+GGG | 0.485554 | 2_4:+57482579 | Msa0337440:CDS |
| AGAAAGCTTACTTGGGGAAG+GGG | 0.485877 | 2_4:+57482759 | Msa0337440:CDS |
| GGTAAGGAACGCTTCTGGGC+TGG | 0.487294 | 2_4:-57478345 | None:intergenic |
| TCCAAATATTGAGAAGTATG+AGG | 0.490054 | 2_4:+57481948 | Msa0337440:CDS |
| CATTGACAAATCAATGCGAC+TGG | 0.495504 | 2_4:+57481681 | Msa0337440:CDS |
| AGGTTCTTGACAGACACATT+TGG | 0.497021 | 2_4:-57483108 | None:intergenic |
| CACAATGTGTGCGGCAAGCA+GGG | 0.500661 | 2_4:-57481867 | None:intergenic |
| TTTATATTTATTGGTTTGGG+TGG | 0.508189 | 2_4:+57483957 | Msa0337440:three_prime_UTR |
| CCTAGACATTCGACCACTAC+GGG | 0.509009 | 2_4:-57482838 | None:intergenic |
| AACCAAGCTAGTGATATTCA+AGG | 0.512189 | 2_4:+57482519 | Msa0337440:CDS |
| AGATGAAGCTTCTCCAACCT+TGG | 0.512257 | 2_4:-57483075 | None:intergenic |
| GTCCAATGTCCAATTTGCCT+TGG | 0.513498 | 2_4:+57480762 | Msa0337440:CDS |
| GCAGCACCATGACGATGAAA+AGG | 0.517328 | 2_4:+57478599 | Msa0337440:CDS |
| CAAAGAAACTACACCAAGGT+TGG | 0.517366 | 2_4:+57483062 | Msa0337440:CDS |
| TGGGTGGCAGGCGTTTGAGA+TGG | 0.521042 | 2_4:+57483973 | Msa0337440:three_prime_UTR |
| AGCTGATGAGGATTCAGTCC+TGG | 0.521897 | 2_4:+57483567 | Msa0337440:CDS |
| TTTCGATGAGCTATCATCGT+TGG | 0.522619 | 2_4:+57483591 | Msa0337440:CDS |
| AGACGAGCAAGGAGAAGAAG+AGG | 0.522708 | 2_4:+57478521 | Msa0337440:CDS |
| AAAAGCTAGAAAGCTTACTT+GGG | 0.524304 | 2_4:+57482752 | Msa0337440:CDS |
| GACGAAGATGACGATGAAGA+AGG | 0.526802 | 2_4:+57478576 | Msa0337440:CDS |
| GGCAGTGGTGGTGGTAGCAA+CGG | 0.528099 | 2_4:+57482807 | Msa0337440:CDS |
| GTCACAAATGAACTTGAACT+TGG | 0.528949 | 2_4:-57482453 | None:intergenic |
| GGGCTGAGAGGAGCGAACTC+TGG | 0.529329 | 2_4:-57482640 | None:intergenic |
| ATGATAGCTCATCGAAATCC+AGG | 0.532453 | 2_4:-57483585 | None:intergenic |
| GGAGAAGAACCGAAATAAGC+AGG | 0.536321 | 2_4:+57482100 | Msa0337440:CDS |
| ACCTAGACATTCGACCACTA+CGG | 0.538677 | 2_4:-57482839 | None:intergenic |
| TCTTCATCTTCCATTGACTC+GGG | 0.539473 | 2_4:-57478366 | None:intergenic |
| TCAACTTCTTCAACCGTCAA+AGG | 0.540393 | 2_4:-57483499 | None:intergenic |
| CTCATCTTCTGGTGATGAGG+GGG | 0.540710 | 2_4:+57482581 | Msa0337440:CDS |
| CTAGCATAGTATCATTATGA+AGG | 0.540726 | 2_4:-57484126 | None:intergenic |
| TCAAGGATCTGAAGAAAATG+AGG | 0.543394 | 2_4:+57482536 | Msa0337440:CDS |
| CCCGTAGTGGTCGAATGTCT+AGG | 0.544547 | 2_4:+57482838 | Msa0337440:CDS |
| CTAGAAAGCTTACTTGGGGA+AGG | 0.545363 | 2_4:+57482757 | Msa0337440:CDS |
| AAGCTTACTTGGGGAAGGGG+TGG | 0.546390 | 2_4:+57482762 | Msa0337440:CDS |
| TTGTGACAAGTCAGCTGATG+AGG | 0.552433 | 2_4:+57483555 | Msa0337440:CDS |
| AGACTCATCTTCTGGTGATG+AGG | 0.555644 | 2_4:+57482578 | Msa0337440:CDS |
| ATCAAAGAAACCTTCAGTCT+AGG | 0.562587 | 2_4:+57482490 | Msa0337440:CDS |
| GGAGCTTGAATTTCGTGAAG+AGG | 0.563934 | 2_4:+57482079 | Msa0337440:intron |
| GATTCAAGCTTCAATAGCAA+AGG | 0.564070 | 2_4:+57482383 | Msa0337440:intron |
| TAGAAAGCTTACTTGGGGAA+GGG | 0.564314 | 2_4:+57482758 | Msa0337440:CDS |
| AAATCGAGGAGCTTCTAGGC+TGG | 0.565613 | 2_4:+57482725 | Msa0337440:CDS |
| ACGAAGATGACGATGAAGAA+GGG | 0.568533 | 2_4:+57478577 | Msa0337440:CDS |
| CAATGCATTCCCTGCAAAAG+CGG | 0.577701 | 2_4:-57481663 | None:intergenic |
| TCGTCAATGGCAAGTCCTGA+TGG | 0.582981 | 2_4:+57482666 | Msa0337440:CDS |
| GGACTTGCCATTGACGATGA+GGG | 0.585871 | 2_4:-57482660 | None:intergenic |
| CATCGACCAACTCGAACAAG+AGG | 0.594268 | 2_4:+57478449 | Msa0337440:CDS |
| GATGAGGAAGAAGACGAGCA+AGG | 0.608097 | 2_4:+57478510 | Msa0337440:CDS |
| GACGGCTAGCACAATGTGTG+CGG | 0.610661 | 2_4:-57481876 | None:intergenic |
| TACCAAGGCAAATTGGACAT+TGG | 0.611122 | 2_4:-57480764 | None:intergenic |
| TTCAGATTCTGGCATACAAG+AGG | 0.611493 | 2_4:+57483921 | Msa0337440:intron |
| AACACAAGATATGGCAGTGG+TGG | 0.615387 | 2_4:+57482795 | Msa0337440:CDS |
| GATCATCTCTCAAGGAGCGA+CGG | 0.617352 | 2_4:-57481894 | None:intergenic |
| TAGTGGTCGAATGTCTAGGT+TGG | 0.617463 | 2_4:+57482842 | Msa0337440:CDS |
| ACTCATCTTCTGGTGATGAG+GGG | 0.620825 | 2_4:+57482580 | Msa0337440:CDS |
| AGGACTTGCCATTGACGATG+AGG | 0.621059 | 2_4:-57482661 | None:intergenic |
| ATTGACAAATCAATGCGACT+GGG | 0.624131 | 2_4:+57481682 | Msa0337440:CDS |
| GGTCGATGAAGTGTGGTTCG+CGG | 0.626767 | 2_4:-57478434 | None:intergenic |
| GTAGTTTGGATCATCTCTCA+AGG | 0.629290 | 2_4:-57481902 | None:intergenic |
| GATTCTGGCATACAAGAGGA+AGG | 0.639221 | 2_4:+57483925 | Msa0337440:intron |
| CATTGACGATGAGGGCTGAG+AGG | 0.642573 | 2_4:-57482652 | None:intergenic |
| TCGAGTTGGTCGATGAAGTG+TGG | 0.648127 | 2_4:-57478441 | None:intergenic |
| TGATCAACAAGAGCAAGATG+AGG | 0.648875 | 2_4:+57478494 | Msa0337440:CDS |
| AGTAACACAAGATATGGCAG+TGG | 0.654930 | 2_4:+57482792 | Msa0337440:CDS |
| TCAATGGCAAGTCCTGATGG+TGG | 0.664275 | 2_4:+57482669 | Msa0337440:CDS |
| GCATACAAGAGGAAGGTCTG+AGG | 0.664724 | 2_4:+57483932 | Msa0337440:CDS |
| CTTGAATGAGAACACTGATG+AGG | 0.666277 | 2_4:+57482881 | Msa0337440:CDS |
| TCATCTTCTGGTGATGAGGG+GGG | 0.670726 | 2_4:+57482582 | Msa0337440:CDS |
| AACGGCAAGAGTTCCCGTAG+TGG | 0.671350 | 2_4:+57482825 | Msa0337440:CDS |
| GTTCGCGGTGATGCTTGACA+TGG | 0.673542 | 2_4:-57478419 | None:intergenic |
| GATATAAATAGAGAAAATCG+AGG | 0.683062 | 2_4:+57482711 | Msa0337440:CDS |
| AAAGCTAGAAAGCTTACTTG+GGG | 0.686965 | 2_4:+57482753 | Msa0337440:CDS |
| TTGACAAATCAATGCGACTG+GGG | 0.721274 | 2_4:+57481683 | Msa0337440:CDS |
| TGGACAAAGAAACTACACCA+AGG | 0.751730 | 2_4:+57483058 | Msa0337440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCATAAATAATAAATC+CGG | - | chr2_4:57481822-57481841 | None:intergenic | 10.0% |
| !! | ATTAAAATTTAGTATACTTT+AGG | - | chr2_4:57484104-57484123 | None:intergenic | 10.0% |
| !!! | AACTGATTTTTTTTAACATT+CGG | + | chr2_4:57479995-57480014 | Msa0337440:intron | 15.0% |
| !!! | TTAATTTAATAGAGCATTTT+AGG | + | chr2_4:57480302-57480321 | Msa0337440:intron | 15.0% |
| !!! | TAAAACTTATTTTTTACCAA+AGG | - | chr2_4:57480417-57480436 | None:intergenic | 15.0% |
| !!! | GGTAAAAAATAAGTTTTAAA+TGG | + | chr2_4:57480419-57480438 | Msa0337440:intron | 15.0% |
| !! | TTGAAAGAACAATTTAATAT+GGG | - | chr2_4:57480660-57480679 | None:intergenic | 15.0% |
| !! | ATTGAAAGAACAATTTAATA+TGG | - | chr2_4:57480661-57480680 | None:intergenic | 15.0% |
| !! | AAATGTTACTAATATTTAGT+TGG | + | chr2_4:57480896-57480915 | Msa0337440:intron | 15.0% |
| !! | ATTAGATACAATAGAAAATA+TGG | - | chr2_4:57480958-57480977 | None:intergenic | 15.0% |
| !! | TGTCAATTATATTTATAACA+AGG | + | chr2_4:57481067-57481086 | Msa0337440:intron | 15.0% |
| !!! | TAATAAAATTTGAAATTGCA+TGG | - | chr2_4:57481503-57481522 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCTTTCTTTTC+TGG | + | chr2_4:57482358-57482377 | Msa0337440:intron | 15.0% |
| !!! | AATATATTAACAAAGCATTT+TGG | - | chr2_4:57483349-57483368 | None:intergenic | 15.0% |
| !!! | ATTATACAATTGTTTTCAAT+GGG | - | chr2_4:57483390-57483409 | None:intergenic | 15.0% |
| !!! | TATTATACAATTGTTTTCAA+TGG | - | chr2_4:57483391-57483410 | None:intergenic | 15.0% |
| !!! | TTTTCTCAAATTTATTATCA+TGG | - | chr2_4:57483779-57483798 | None:intergenic | 15.0% |
| !!! | ATCGTTTTCAATTATAAACA+TGG | - | chr2_4:57479081-57479100 | None:intergenic | 20.0% |
| !!! | TTCAAAACGTATTTTTTGTA+AGG | + | chr2_4:57479377-57479396 | Msa0337440:intron | 20.0% |
| !! | TTATTATGAAATACAGTTTC+AGG | - | chr2_4:57479473-57479492 | None:intergenic | 20.0% |
| !! | CTATGATGAAAAACAAAAAA+GGG | - | chr2_4:57480066-57480085 | None:intergenic | 20.0% |
| !! | ACTATGATGAAAAACAAAAA+AGG | - | chr2_4:57480067-57480086 | None:intergenic | 20.0% |
| !! | CTAAAATATTGAAATCATGA+TGG | + | chr2_4:57480241-57480260 | Msa0337440:intron | 20.0% |
| !! | TTATGAATACTATTCTTGAA+AGG | + | chr2_4:57480563-57480582 | Msa0337440:intron | 20.0% |
| !! | AATGATTATGAACATGTTAA+CGG | + | chr2_4:57480590-57480609 | Msa0337440:intron | 20.0% |
| !!! | TACAAGTTGAAATGAAAATT+TGG | + | chr2_4:57480613-57480632 | Msa0337440:intron | 20.0% |
| !!! | ATTTTCGTAGTATACTTAAT+TGG | + | chr2_4:57481096-57481115 | Msa0337440:intron | 20.0% |
| !!! | ATTGTGAATACTGATTTTAA+AGG | + | chr2_4:57481324-57481343 | Msa0337440:intron | 20.0% |
| !! | TATGATATATATATCATCTC+AGG | + | chr2_4:57481833-57481852 | Msa0337440:intron | 20.0% |
| !! | TCATAAGATATGTATTTAGT+TGG | - | chr2_4:57482265-57482284 | None:intergenic | 20.0% |
| !! | GATAAGATTCAAGATTAATA+AGG | - | chr2_4:57482313-57482332 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATCACTTATTTC+TGG | + | chr2_4:57483151-57483170 | Msa0337440:intron | 20.0% |
| !!! | TTCAAAAAAACAAAGCATTT+TGG | - | chr2_4:57483320-57483339 | None:intergenic | 20.0% |
| !!! | TTATACAATTGTTTTCAATG+GGG | - | chr2_4:57483389-57483408 | None:intergenic | 20.0% |
| !!! | ATCCAAAAGCATATTTAAAA+GGG | + | chr2_4:57483678-57483697 | Msa0337440:intron | 20.0% |
| !!! | AAATGTAATCACATGTTTTA+CGG | + | chr2_4:57483809-57483828 | Msa0337440:intron | 20.0% |
| !!! | GCATTTATATTTATTGGTTT+GGG | + | chr2_4:57483954-57483973 | Msa0337440:three_prime_UTR | 20.0% |
| !! | AAAAAAAGACTTTAAGCAAT+TGG | - | chr2_4:57484043-57484062 | None:intergenic | 20.0% |
| !! | GATAACTTATTCACTTTAAT+TGG | - | chr2_4:57484082-57484101 | None:intergenic | 20.0% |
| !!! | AAAACAAACACCAATATTTT+AGG | - | chr2_4:57484193-57484212 | None:intergenic | 20.0% |
| !!! | TTTGTTCATGTTCTAAAGTT+TGG | + | chr2_4:57478752-57478771 | Msa0337440:intron | 25.0% |
| ! | CTAATCTTCAAATCAAACTT+AGG | + | chr2_4:57479279-57479298 | Msa0337440:intron | 25.0% |
| ! | TTAAAGCTTCAACAAAATCA+TGG | - | chr2_4:57479554-57479573 | None:intergenic | 25.0% |
| ! | AAACAATTTAACTGCATGTT+TGG | - | chr2_4:57479631-57479650 | None:intergenic | 25.0% |
| !!! | TAAAGGATGTTGTTTTATAG+TGG | - | chr2_4:57479758-57479777 | None:intergenic | 25.0% |
| ! | TTCCTGATGATATTGTTAAA+GGG | - | chr2_4:57480031-57480050 | None:intergenic | 25.0% |
| !!! | ACTTTTCCATTTTATTTGCA+TGG | + | chr2_4:57480467-57480486 | Msa0337440:intron | 25.0% |
| ! | ATAGAAAATATGGAACTAAG+AGG | - | chr2_4:57480948-57480967 | None:intergenic | 25.0% |
| !! | ATCTAAGATCATTTGTTACT+TGG | + | chr2_4:57481281-57481300 | Msa0337440:intron | 25.0% |
| ! | TAAGAAAACAAGAACTGTTA+TGG | + | chr2_4:57481630-57481649 | Msa0337440:CDS | 25.0% |
| ! | GGCATATTAAATAAATAAGG+TGG | - | chr2_4:57481727-57481746 | None:intergenic | 25.0% |
| ! | AGCGGCATATTAAATAAATA+AGG | - | chr2_4:57481730-57481749 | None:intergenic | 25.0% |
| ! | ACTTTGTCCTAATATATACA+CGG | + | chr2_4:57481997-57482016 | Msa0337440:intron | 25.0% |
| !! | CACTAGCTAAATTTTACAAA+AGG | - | chr2_4:57482038-57482057 | None:intergenic | 25.0% |
| !! | CAATAGCAAAGGTTTTTAAA+CGG | + | chr2_4:57482394-57482413 | Msa0337440:CDS | 25.0% |
| ! | GATATAAATAGAGAAAATCG+AGG | + | chr2_4:57482711-57482730 | Msa0337440:CDS | 25.0% |
| !! | TACGTAGTAACATTTTTCAT+TGG | - | chr2_4:57482942-57482961 | None:intergenic | 25.0% |
| ! | ATAAGTGATAAAAGAAAACG+AGG | - | chr2_4:57483148-57483167 | None:intergenic | 25.0% |
| !!! | AAAAAAACAAAGCATTTTGG+TGG | - | chr2_4:57483317-57483336 | None:intergenic | 25.0% |
| !! | GATCCAAAAGCATATTTAAA+AGG | + | chr2_4:57483677-57483696 | Msa0337440:intron | 25.0% |
| !! | TCCAAAAGCATATTTAAAAG+GGG | + | chr2_4:57483679-57483698 | Msa0337440:intron | 25.0% |
| !! | TTACTTGATAATACTTGTGT+GGG | - | chr2_4:57483862-57483881 | None:intergenic | 25.0% |
| !! | TTTACTTGATAATACTTGTG+TGG | - | chr2_4:57483863-57483882 | None:intergenic | 25.0% |
| !! | TCTGAGGCATTTATATTTAT+TGG | + | chr2_4:57483948-57483967 | Msa0337440:exon | 25.0% |
| !! | GGCATTTATATTTATTGGTT+TGG | + | chr2_4:57483953-57483972 | Msa0337440:three_prime_UTR | 25.0% |
| !!! | TTTATATTTATTGGTTTGGG+TGG | + | chr2_4:57483957-57483976 | Msa0337440:three_prime_UTR | 25.0% |
| ! | ACATATACCTCCTAAAATAT+TGG | + | chr2_4:57484180-57484199 | Msa0337440:three_prime_UTR | 25.0% |
| ! | ATTTTTCCTTTTCATCGTCA+TGG | - | chr2_4:57478608-57478627 | None:intergenic | 30.0% |
| !!! | CGTTTAGCTTTTTTATCACA+TGG | + | chr2_4:57478670-57478689 | Msa0337440:intron | 30.0% |
| !! | TGGTTTGCATGTTTAGATTT+TGG | + | chr2_4:57479054-57479073 | Msa0337440:intron | 30.0% |
| TACTTTCTTCGATCATGAAA+TGG | - | chr2_4:57479108-57479127 | None:intergenic | 30.0% | |
| AATGAAAATATACGCCAAAG+TGG | - | chr2_4:57479132-57479151 | None:intergenic | 30.0% | |
| ! | TGGCGTATATTTTCATTACT+TGG | + | chr2_4:57479135-57479154 | Msa0337440:intron | 30.0% |
| !! | ACTTGGTACATTGTTTTTCA+TGG | + | chr2_4:57479152-57479171 | Msa0337440:intron | 30.0% |
| ATCTATGATCTCTTTCATGA+GGG | + | chr2_4:57479198-57479217 | Msa0337440:intron | 30.0% | |
| ACTTTAACAATGACACATAG+TGG | - | chr2_4:57479241-57479260 | None:intergenic | 30.0% | |
| CTTCAAATCAAACTTAGGTT+TGG | + | chr2_4:57479284-57479303 | Msa0337440:intron | 30.0% | |
| AAGGATTGTCATATACCATT+TGG | + | chr2_4:57479396-57479415 | Msa0337440:intron | 30.0% | |
| ATTTGAATCATGACTCCAAA+TGG | - | chr2_4:57479414-57479433 | None:intergenic | 30.0% | |
| ATTTAACTGCATGTTTGGAT+TGG | - | chr2_4:57479626-57479645 | None:intergenic | 30.0% | |
| ATTCTTTCAATGTTTGTGCA+TGG | + | chr2_4:57479665-57479684 | Msa0337440:intron | 30.0% | |
| TCCTGATGATATTGTTAAAG+GGG | - | chr2_4:57480030-57480049 | None:intergenic | 30.0% | |
| CTTCCTGATGATATTGTTAA+AGG | - | chr2_4:57480032-57480051 | None:intergenic | 30.0% | |
| AGTTATCAATAAAGCCAGAT+AGG | + | chr2_4:57480084-57480103 | Msa0337440:intron | 30.0% | |
| ACAATGCCATGCAAATAAAA+TGG | - | chr2_4:57480476-57480495 | None:intergenic | 30.0% | |
| AAATGAAAATTTGGCATGTC+TGG | + | chr2_4:57480622-57480641 | Msa0337440:intron | 30.0% | |
| AAAAACATACCAAGGCAAAT+TGG | - | chr2_4:57480774-57480793 | None:intergenic | 30.0% | |
| !! | ATGTTTTTGTTCAACCTTTC+TGG | + | chr2_4:57480786-57480805 | Msa0337440:intron | 30.0% |
| ACTATAACCTACTTCACTAT+TGG | + | chr2_4:57480978-57480997 | Msa0337440:intron | 30.0% | |
| TGGAAATTCGATCATATTGA+AGG | + | chr2_4:57480998-57481017 | Msa0337440:intron | 30.0% | |
| GTAAGATAAGCATGAATACA+TGG | - | chr2_4:57481036-57481055 | None:intergenic | 30.0% | |
| TTCAAACTGAGACTTATTCA+TGG | - | chr2_4:57481242-57481261 | None:intergenic | 30.0% | |
| TGTGAACTCGTTTCTATAAA+CGG | + | chr2_4:57481355-57481374 | Msa0337440:intron | 30.0% | |
| AGACAAATGCTAAAAACAAC+AGG | - | chr2_4:57481466-57481485 | None:intergenic | 30.0% | |
| TGGATATAGAGTAGCAATAA+GGG | - | chr2_4:57481932-57481951 | None:intergenic | 30.0% | |
| TTGGATATAGAGTAGCAATA+AGG | - | chr2_4:57481933-57481952 | None:intergenic | 30.0% | |
| ! | TCCAAATATTGAGAAGTATG+AGG | + | chr2_4:57481948-57481967 | Msa0337440:CDS | 30.0% |
| TCCTCATACTTCTCAATATT+TGG | - | chr2_4:57481952-57481971 | None:intergenic | 30.0% | |
| AAACATTGACCTGCTTATTT+CGG | - | chr2_4:57482112-57482131 | None:intergenic | 30.0% | |
| ACATCAATCAGTAAAACATG+TGG | - | chr2_4:57482206-57482225 | None:intergenic | 30.0% | |
| ! | TAAGTTGTTGACTATCTACA+TGG | + | chr2_4:57482226-57482245 | Msa0337440:intron | 30.0% |
| ! | TGTATTTAGTTGGTATGCTA+CGG | - | chr2_4:57482255-57482274 | None:intergenic | 30.0% |
| TCTGAAGAAAATGAGGAAAA+TGG | + | chr2_4:57482543-57482562 | Msa0337440:CDS | 30.0% | |
| !!! | ATCTCTTTCGTTTTTTCTGT+CGG | - | chr2_4:57482617-57482636 | None:intergenic | 30.0% |
| AAAAGCTAGAAAGCTTACTT+GGG | + | chr2_4:57482752-57482771 | Msa0337440:CDS | 30.0% | |
| !!! | CTCCTTTTTTTCTCTTGTAA+TGG | + | chr2_4:57482915-57482934 | Msa0337440:intron | 30.0% |
| GTCCATTACAAGAGAAAAAA+AGG | - | chr2_4:57482920-57482939 | None:intergenic | 30.0% | |
| ! | ATTTCCAGTTCATCTTTTTG+TGG | - | chr2_4:57483625-57483644 | None:intergenic | 30.0% |
| AAGTCTTAATACTCACCAAA+TGG | - | chr2_4:57483705-57483724 | None:intergenic | 30.0% | |
| ! | TACTTGATAATACTTGTGTG+GGG | - | chr2_4:57483861-57483880 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTGTTTCAGATTC+TGG | + | chr2_4:57483910-57483929 | Msa0337440:intron | 30.0% |
| CTAGCATAGTATCATTATGA+AGG | - | chr2_4:57484129-57484148 | None:intergenic | 30.0% | |
| !! | ACAAACACCAATATTTTAGG+AGG | - | chr2_4:57484190-57484209 | None:intergenic | 30.0% |
| ! | TTCTTCATCTTCCATTGACT+CGG | - | chr2_4:57478370-57478389 | None:intergenic | 35.0% |
| GATGAAAAGGAAAAATCGCA+AGG | + | chr2_4:57478612-57478631 | Msa0337440:CDS | 35.0% | |
| CCAGTTGAGAAAAACCAATT+GGG | - | chr2_4:57478707-57478726 | None:intergenic | 35.0% | |
| !!! | CCAATTGGTTTTTCTCAACT+GGG | + | chr2_4:57478705-57478724 | Msa0337440:intron | 35.0% |
| ! | AACTGGGTTATGCTTAGTTT+TGG | + | chr2_4:57478721-57478740 | Msa0337440:intron | 35.0% |
| !!! | AGATTCATGTTTTGATCCTG+TGG | + | chr2_4:57478898-57478917 | Msa0337440:intron | 35.0% |
| ! | TTTTGATCCTGTGGATTTTG+AGG | + | chr2_4:57478907-57478926 | Msa0337440:intron | 35.0% |
| !!! | TGGATTTTGAGGTTGTTGTT+TGG | + | chr2_4:57478918-57478937 | Msa0337440:intron | 35.0% |
| CCAACAATGACAAATCAAAC+AGG | - | chr2_4:57479037-57479056 | None:intergenic | 35.0% | |
| !! | CCTGTTTGATTTGTCATTGT+TGG | + | chr2_4:57479034-57479053 | Msa0337440:intron | 35.0% |
| ATCGAAGAAAGTAACCACTT+TGG | + | chr2_4:57479115-57479134 | Msa0337440:intron | 35.0% | |
| CATCTATGATCTCTTTCATG+AGG | + | chr2_4:57479197-57479216 | Msa0337440:intron | 35.0% | |
| ! | GTTGTTACTTAGTGCATGTT+TGG | + | chr2_4:57479495-57479514 | Msa0337440:intron | 35.0% |
| TTAGTGCATGTTTGGATTGA+CGG | + | chr2_4:57479503-57479522 | Msa0337440:intron | 35.0% | |
| TGAGTTTGACAAAATCACCA+TGG | + | chr2_4:57479526-57479545 | Msa0337440:intron | 35.0% | |
| CAAACATTGAAAGAATGCAG+AGG | - | chr2_4:57479661-57479680 | None:intergenic | 35.0% | |
| TTTCAATGTTTGTGCATGGT+TGG | + | chr2_4:57479669-57479688 | Msa0337440:intron | 35.0% | |
| ! | GTTAACAGTGCTATTGATTG+TGG | + | chr2_4:57479707-57479726 | Msa0337440:intron | 35.0% |
| ! | ATGCACAAAGCTGAACATTT+TGG | - | chr2_4:57479917-57479936 | None:intergenic | 35.0% |
| AAAATCAGTTGCCAGTCTTT+GGG | - | chr2_4:57479985-57480004 | None:intergenic | 35.0% | |
| AAAAATCAGTTGCCAGTCTT+TGG | - | chr2_4:57479986-57480005 | None:intergenic | 35.0% | |
| ACCCCTTTAACAATATCATC+AGG | + | chr2_4:57480026-57480045 | Msa0337440:intron | 35.0% | |
| !! | AGTGAGTTTGCTTGAAGTTT+TGG | + | chr2_4:57480373-57480392 | Msa0337440:intron | 35.0% |
| GGTTGAACAAAAACATACCA+AGG | - | chr2_4:57480782-57480801 | None:intergenic | 35.0% | |
| ! | TTTTGTTCAACCTTTCTGGA+TGG | + | chr2_4:57480790-57480809 | Msa0337440:intron | 35.0% |
| ACTATTACAGAGCTATCACT+AGG | + | chr2_4:57480921-57480940 | Msa0337440:intron | 35.0% | |
| CGAATTTCCAATAGTGAAGT+AGG | - | chr2_4:57480988-57481007 | None:intergenic | 35.0% | |
| CGTAGTATACTTAATTGGTC+AGG | + | chr2_4:57481101-57481120 | Msa0337440:intron | 35.0% | |
| AGGCTGTTAATATCACTGTA+TGG | + | chr2_4:57481121-57481140 | Msa0337440:intron | 35.0% | |
| GTGAACTCGTTTCTATAAAC+GGG | + | chr2_4:57481356-57481375 | Msa0337440:intron | 35.0% | |
| TATTCTATTAGCACCAGATG+TGG | + | chr2_4:57481412-57481431 | Msa0337440:intron | 35.0% | |
| TGACATTTAACAACCACATC+TGG | - | chr2_4:57481428-57481447 | None:intergenic | 35.0% | |
| ATAATTCAAGCATAAGCTGC+AGG | - | chr2_4:57481542-57481561 | None:intergenic | 35.0% | |
| TGCAGCTTATGCTTGAATTA+TGG | + | chr2_4:57481541-57481560 | Msa0337440:intron | 35.0% | |
| CTGTTCAAACACAAAATGCT+TGG | - | chr2_4:57481603-57481622 | None:intergenic | 35.0% | |
| ! | CAAGCATTTTGTGTTTGAAC+AGG | + | chr2_4:57481601-57481620 | Msa0337440:intron | 35.0% |
| ATTGACAAATCAATGCGACT+GGG | + | chr2_4:57481682-57481701 | Msa0337440:CDS | 35.0% | |
| AGATAAGCAAAGTAGAGACA+AGG | - | chr2_4:57481771-57481790 | None:intergenic | 35.0% | |
| ATGTAATGTCTGTATGTGAC+CGG | + | chr2_4:57481800-57481819 | Msa0337440:intron | 35.0% | |
| ! | TATTGAGAAGTATGAGGAAG+AGG | + | chr2_4:57481954-57481973 | Msa0337440:CDS | 35.0% |
| AACAGGACCGTGTATATATT+AGG | - | chr2_4:57482007-57482026 | None:intergenic | 35.0% | |
| ! | TACAAAAGGTGCATGTAAAC+AGG | - | chr2_4:57482024-57482043 | None:intergenic | 35.0% |
| GATTCAAGCTTCAATAGCAA+AGG | + | chr2_4:57482383-57482402 | Msa0337440:intron | 35.0% | |
| GTCACAAATGAACTTGAACT+TGG | - | chr2_4:57482456-57482475 | None:intergenic | 35.0% | |
| ATCAAAGAAACCTTCAGTCT+AGG | + | chr2_4:57482490-57482509 | Msa0337440:CDS | 35.0% | |
| AACCAAGCTAGTGATATTCA+AGG | + | chr2_4:57482519-57482538 | Msa0337440:CDS | 35.0% | |
| ATCCTTGAATATCACTAGCT+TGG | - | chr2_4:57482524-57482543 | None:intergenic | 35.0% | |
| TCAAGGATCTGAAGAAAATG+AGG | + | chr2_4:57482536-57482555 | Msa0337440:CDS | 35.0% | |
| AATGAAAGAGACTCATCTTC+TGG | + | chr2_4:57482570-57482589 | Msa0337440:CDS | 35.0% | |
| GACAGAAAAAACGAAAGAGA+TGG | + | chr2_4:57482616-57482635 | Msa0337440:CDS | 35.0% | |
| ! | TGGAAGCATAGAAAGTGATA+TGG | + | chr2_4:57482689-57482708 | Msa0337440:CDS | 35.0% |
| CAAAAGCTAGAAAGCTTACT+TGG | + | chr2_4:57482751-57482770 | Msa0337440:CDS | 35.0% | |
| AAAGCTAGAAAGCTTACTTG+GGG | + | chr2_4:57482753-57482772 | Msa0337440:CDS | 35.0% | |
| TTTCGGAGTAACACAAGATA+TGG | + | chr2_4:57482786-57482805 | Msa0337440:CDS | 35.0% | |
| !! | AAAACAAAGCATTTTGGTGG+AGG | - | chr2_4:57483314-57483333 | None:intergenic | 35.0% |
| AGATCCACAAAAAGATGAAC+TGG | + | chr2_4:57483618-57483637 | Msa0337440:CDS | 35.0% | |
| ! | GCCCCTTTTAAATATGCTTT+TGG | - | chr2_4:57483683-57483702 | None:intergenic | 35.0% |
| CATATTTAAAAGGGGCCATT+TGG | + | chr2_4:57483687-57483706 | Msa0337440:intron | 35.0% | |
| ! | ACTTGATAATACTTGTGTGG+GGG | - | chr2_4:57483860-57483879 | None:intergenic | 35.0% |
| !! | TCTTCATCTTCCATTGACTC+GGG | - | chr2_4:57478369-57478388 | None:intergenic | 40.0% |
| TGATCAACAAGAGCAAGATG+AGG | + | chr2_4:57478494-57478513 | Msa0337440:CDS | 40.0% | |
| ACGAAGATGACGATGAAGAA+GGG | + | chr2_4:57478577-57478596 | Msa0337440:CDS | 40.0% | |
| !! | TGGTTTTACAGTGACCCAAT+TGG | + | chr2_4:57478690-57478709 | Msa0337440:intron | 40.0% |
| !!! | CCCAATTGGTTTTTCTCAAC+TGG | + | chr2_4:57478704-57478723 | Msa0337440:intron | 40.0% |
| CCCAGTTGAGAAAAACCAAT+TGG | - | chr2_4:57478708-57478727 | None:intergenic | 40.0% | |
| TTCAGAGTCAGAGGATTCAT+TGG | - | chr2_4:57478798-57478817 | None:intergenic | 40.0% | |
| ! | AGGTTTTTCTTCAGAGTCAG+AGG | - | chr2_4:57478807-57478826 | None:intergenic | 40.0% |
| TGAAAGAGTGAGAGTAAGAG+AGG | - | chr2_4:57478836-57478855 | None:intergenic | 40.0% | |
| ACAACAACCTCAAAATCCAC+AGG | - | chr2_4:57478917-57478936 | None:intergenic | 40.0% | |
| TATGATCTCTTTCATGAGGG+TGG | + | chr2_4:57479201-57479220 | Msa0337440:intron | 40.0% | |
| ! | TTTAGAGTAGCCATGTCAAC+TGG | + | chr2_4:57479336-57479355 | Msa0337440:intron | 40.0% |
| ATTCAGTTGACCAGTTGACA+TGG | - | chr2_4:57479349-57479368 | None:intergenic | 40.0% | |
| ATGTCAACTGGTCAACTGAA+TGG | + | chr2_4:57479348-57479367 | Msa0337440:intron | 40.0% | |
| ! | TCAACAAAATCATGGTGCCA+TGG | - | chr2_4:57479546-57479565 | None:intergenic | 40.0% |
| ! | TAACTGCATGTTTGGATTGG+CGG | - | chr2_4:57479623-57479642 | None:intergenic | 40.0% |
| CAATAGCACTGTTAACCACA+AGG | - | chr2_4:57479703-57479722 | None:intergenic | 40.0% | |
| ! | ACAGTGCTATTGATTGTGGA+AGG | + | chr2_4:57479711-57479730 | Msa0337440:intron | 40.0% |
| CCACTGTGGCAAATTTGTAA+AGG | - | chr2_4:57479775-57479794 | None:intergenic | 40.0% | |
| CCTTTACAAATTTGCCACAG+TGG | + | chr2_4:57479772-57479791 | Msa0337440:intron | 40.0% | |
| ! | AGTTCTTTTGCAAACCACTG+TGG | - | chr2_4:57479789-57479808 | None:intergenic | 40.0% |
| ! | ACAGTGGTTTGCAAAAGAAC+TGG | + | chr2_4:57479788-57479807 | Msa0337440:intron | 40.0% |
| ! | TTGATAGCACTTGTAGCTAC+AGG | + | chr2_4:57479836-57479855 | Msa0337440:intron | 40.0% |
| ! | TCAGTGAAAGACACGCTTTT+TGG | - | chr2_4:57479864-57479883 | None:intergenic | 40.0% |
| ! | AAAAGCGTGTCTTTCACTGA+AGG | + | chr2_4:57479864-57479883 | Msa0337440:intron | 40.0% |
| AGTAAGACAGGGCAATAGAA+GGG | - | chr2_4:57480167-57480186 | None:intergenic | 40.0% | |
| ! | AAGGTACTACGAGTAAGACA+GGG | - | chr2_4:57480178-57480197 | None:intergenic | 40.0% |
| ! | TAAGGTACTACGAGTAAGAC+AGG | - | chr2_4:57480179-57480198 | None:intergenic | 40.0% |
| TTACTCGTAGTACCTTAGAC+AGG | + | chr2_4:57480182-57480201 | Msa0337440:intron | 40.0% | |
| TACCAAGGCAAATTGGACAT+TGG | - | chr2_4:57480767-57480786 | None:intergenic | 40.0% | |
| CTCAACTATACCATCCAGAA+AGG | - | chr2_4:57480803-57480822 | None:intergenic | 40.0% | |
| ! | GACATGCTATTTGAATGACG+TGG | + | chr2_4:57481378-57481397 | Msa0337440:intron | 40.0% |
| AACAACAGGCAATCACACTA+TGG | - | chr2_4:57481452-57481471 | None:intergenic | 40.0% | |
| CATTGACAAATCAATGCGAC+TGG | + | chr2_4:57481681-57481700 | Msa0337440:CDS | 40.0% | |
| TTGACAAATCAATGCGACTG+GGG | + | chr2_4:57481683-57481702 | Msa0337440:CDS | 40.0% | |
| GTAGTTTGGATCATCTCTCA+AGG | - | chr2_4:57481905-57481924 | None:intergenic | 40.0% | |
| GAAATTCAAGCTCCTGCAAT+GGG | - | chr2_4:57482073-57482092 | None:intergenic | 40.0% | |
| TAGAAAGCTTACTTGGGGAA+GGG | + | chr2_4:57482758-57482777 | Msa0337440:CDS | 40.0% | |
| AGTAACACAAGATATGGCAG+TGG | + | chr2_4:57482792-57482811 | Msa0337440:CDS | 40.0% | |
| CTTGAATGAGAACACTGATG+AGG | + | chr2_4:57482881-57482900 | Msa0337440:CDS | 40.0% | |
| TCATCTCATGTTCGTTTCTC+TGG | + | chr2_4:57483038-57483057 | Msa0337440:CDS | 40.0% | |
| TGGACAAAGAAACTACACCA+AGG | + | chr2_4:57483058-57483077 | Msa0337440:CDS | 40.0% | |
| CAAAGAAACTACACCAAGGT+TGG | + | chr2_4:57483062-57483081 | Msa0337440:CDS | 40.0% | |
| AGGTTCTTGACAGACACATT+TGG | - | chr2_4:57483111-57483130 | None:intergenic | 40.0% | |
| ACGAGGATCTCACTTCATAA+AGG | - | chr2_4:57483131-57483150 | None:intergenic | 40.0% | |
| GAGTTGAACTTGATATCCAG+AGG | + | chr2_4:57483204-57483223 | Msa0337440:intron | 40.0% | |
| !! | GTGACAGGTTTTGATCAACT+TGG | + | chr2_4:57483281-57483300 | Msa0337440:intron | 40.0% |
| TCAACTTCTTCAACCGTCAA+AGG | - | chr2_4:57483502-57483521 | None:intergenic | 40.0% | |
| GGTTGAAGAAGTTGAGATAC+TGG | + | chr2_4:57483507-57483526 | Msa0337440:CDS | 40.0% | |
| GTTGAGATACTGGCAGTTAA+AGG | + | chr2_4:57483517-57483536 | Msa0337440:CDS | 40.0% | |
| ATGATAGCTCATCGAAATCC+AGG | - | chr2_4:57483588-57483607 | None:intergenic | 40.0% | |
| TTTCGATGAGCTATCATCGT+TGG | + | chr2_4:57483591-57483610 | Msa0337440:CDS | 40.0% | |
| TTTGCAAGCTCATGAAACTG+TGG | + | chr2_4:57483645-57483664 | Msa0337440:intron | 40.0% | |
| CCTTCTATGAAGCACAAACA+CGG | + | chr2_4:57483733-57483752 | Msa0337440:intron | 40.0% | |
| ! | CTTGATAATACTTGTGTGGG+GGG | - | chr2_4:57483859-57483878 | None:intergenic | 40.0% |
| TTCAGATTCTGGCATACAAG+AGG | + | chr2_4:57483921-57483940 | Msa0337440:intron | 40.0% | |
| !! | TATTTATTGGTTTGGGTGGC+AGG | + | chr2_4:57483961-57483980 | Msa0337440:three_prime_UTR | 40.0% |
| GAGAGAGAGAGAGAGATTGT+TGG | - | chr2_4:57478303-57478322 | None:intergenic | 45.0% | |
| !! | ATCTTCCATTGACTCGGGTA+AGG | - | chr2_4:57478364-57478383 | None:intergenic | 45.0% |
| CATCTTCCTCTTGTTCGAGT+TGG | - | chr2_4:57478458-57478477 | None:intergenic | 45.0% | |
| GACGAAGATGACGATGAAGA+AGG | + | chr2_4:57478576-57478595 | Msa0337440:CDS | 45.0% | |
| GAGAGTAAGAGAGGTTACTC+AGG | - | chr2_4:57478827-57478846 | None:intergenic | 45.0% | |
| GCACTGTTAACCACAAGGAA+CGG | - | chr2_4:57479698-57479717 | None:intergenic | 45.0% | |
| CTATCAAATTGCAGCCATGG+TGG | - | chr2_4:57479823-57479842 | None:intergenic | 45.0% | |
| GTGCTATCAAATTGCAGCCA+TGG | - | chr2_4:57479826-57479845 | None:intergenic | 45.0% | |
| CTACTACTAGTCCCAAAGAC+TGG | + | chr2_4:57479971-57479990 | Msa0337440:intron | 45.0% | |
| !!! | TAGGCATGCCTTTTAGGTTC+AGG | - | chr2_4:57480116-57480135 | None:intergenic | 45.0% |
| ! | GAACCTAAAAGGCATGCCTA+AGG | + | chr2_4:57480116-57480135 | Msa0337440:intron | 45.0% |
| ! | ATGCCTTAGGCATGCCTTTT+AGG | - | chr2_4:57480122-57480141 | None:intergenic | 45.0% |
| CAGATTGACACACATGCCTT+AGG | - | chr2_4:57480135-57480154 | None:intergenic | 45.0% | |
| GAGTAAGACAGGGCAATAGA+AGG | - | chr2_4:57480168-57480187 | None:intergenic | 45.0% | |
| AGTACCTTAGACAGGCCTTT+AGG | + | chr2_4:57480190-57480209 | Msa0337440:intron | 45.0% | |
| TTTAGGTGCCTTTGGCTACA+CGG | + | chr2_4:57480207-57480226 | Msa0337440:intron | 45.0% | |
| ACAAAACACCGTGTAGCCAA+AGG | - | chr2_4:57480218-57480237 | None:intergenic | 45.0% | |
| GAATGACGTGCACATTCCTT+TGG | + | chr2_4:57480398-57480417 | Msa0337440:intron | 45.0% | |
| GTCCAATGTCCAATTTGCCT+TGG | + | chr2_4:57480762-57480781 | Msa0337440:CDS | 45.0% | |
| CAATGCATTCCCTGCAAAAG+CGG | - | chr2_4:57481666-57481685 | None:intergenic | 45.0% | |
| ACTTCAACTGCAACTGTCAG+CGG | - | chr2_4:57481748-57481767 | None:intergenic | 45.0% | |
| !! | GCAATAAGGGCATCGTAGTT+TGG | - | chr2_4:57481919-57481938 | None:intergenic | 45.0% |
| CGAAATTCAAGCTCCTGCAA+TGG | - | chr2_4:57482074-57482093 | None:intergenic | 45.0% | |
| GGAGCTTGAATTTCGTGAAG+AGG | + | chr2_4:57482079-57482098 | Msa0337440:intron | 45.0% | |
| GGAGAAGAACCGAAATAAGC+AGG | + | chr2_4:57482100-57482119 | Msa0337440:CDS | 45.0% | |
| !! | GGTTTTGTCTCCTAGACTGA+AGG | - | chr2_4:57482503-57482522 | None:intergenic | 45.0% |
| ! | AGACTCATCTTCTGGTGATG+AGG | + | chr2_4:57482578-57482597 | Msa0337440:CDS | 45.0% |
| ! | GACTCATCTTCTGGTGATGA+GGG | + | chr2_4:57482579-57482598 | Msa0337440:CDS | 45.0% |
| ! | ACTCATCTTCTGGTGATGAG+GGG | + | chr2_4:57482580-57482599 | Msa0337440:CDS | 45.0% |
| CTTTCTATGCTTCCACCATC+AGG | - | chr2_4:57482684-57482703 | None:intergenic | 45.0% | |
| GAGAAAATCGAGGAGCTTCT+AGG | + | chr2_4:57482721-57482740 | Msa0337440:CDS | 45.0% | |
| CTAGAAAGCTTACTTGGGGA+AGG | + | chr2_4:57482757-57482776 | Msa0337440:CDS | 45.0% | |
| AGAAAGCTTACTTGGGGAAG+GGG | + | chr2_4:57482759-57482778 | Msa0337440:CDS | 45.0% | |
| AACACAAGATATGGCAGTGG+TGG | + | chr2_4:57482795-57482814 | Msa0337440:CDS | 45.0% | |
| ACCTAGACATTCGACCACTA+CGG | - | chr2_4:57482842-57482861 | None:intergenic | 45.0% | |
| TAGTGGTCGAATGTCTAGGT+TGG | + | chr2_4:57482842-57482861 | Msa0337440:CDS | 45.0% | |
| AGATGAAGCTTCTCCAACCT+TGG | - | chr2_4:57483078-57483097 | None:intergenic | 45.0% | |
| TGAGGTCTAGCATAAGTGGT+TGG | - | chr2_4:57483250-57483269 | None:intergenic | 45.0% | |
| TGCTAGTCAGACTCCTTTGA+CGG | + | chr2_4:57483486-57483505 | Msa0337440:CDS | 45.0% | |
| TTGTGACAAGTCAGCTGATG+AGG | + | chr2_4:57483555-57483574 | Msa0337440:CDS | 45.0% | |
| CCGTGTTTGTGCTTCATAGA+AGG | - | chr2_4:57483736-57483755 | None:intergenic | 45.0% | |
| ATAATACTTGTGTGGGGGGA+GGG | - | chr2_4:57483855-57483874 | None:intergenic | 45.0% | |
| GATTCTGGCATACAAGAGGA+AGG | + | chr2_4:57483925-57483944 | Msa0337440:intron | 45.0% | |
| !! | TCGAGTTGGTCGATGAAGTG+TGG | - | chr2_4:57478444-57478463 | None:intergenic | 50.0% |
| CATCGACCAACTCGAACAAG+AGG | + | chr2_4:57478449-57478468 | Msa0337440:CDS | 50.0% | |
| GATGAGGAAGAAGACGAGCA+AGG | + | chr2_4:57478510-57478529 | Msa0337440:CDS | 50.0% | |
| AGACGAGCAAGGAGAAGAAG+AGG | + | chr2_4:57478521-57478540 | Msa0337440:CDS | 50.0% | |
| GCAGCACCATGACGATGAAA+AGG | + | chr2_4:57478599-57478618 | Msa0337440:CDS | 50.0% | |
| ACGATGGGACACTGCGATTT+AGG | - | chr2_4:57479590-57479609 | None:intergenic | 50.0% | |
| !! | TGGTTGGTAACCGTTCCTTG+TGG | + | chr2_4:57479685-57479704 | Msa0337440:intron | 50.0% |
| ACTGGCATTGCAATCCACCA+TGG | + | chr2_4:57479806-57479825 | Msa0337440:intron | 50.0% | |
| !! | GTGTAGCCAAAGGCACCTAA+AGG | - | chr2_4:57480208-57480227 | None:intergenic | 50.0% |
| !! | AATGCTTGCACCGCTTTTGC+AGG | + | chr2_4:57481653-57481672 | Msa0337440:CDS | 50.0% |
| !! | ATGCTTGCACCGCTTTTGCA+GGG | + | chr2_4:57481654-57481673 | Msa0337440:CDS | 50.0% |
| GATCATCTCTCAAGGAGCGA+CGG | - | chr2_4:57481897-57481916 | None:intergenic | 50.0% | |
| ATACCACTCTGTCCCATTGC+AGG | + | chr2_4:57482058-57482077 | Msa0337440:intron | 50.0% | |
| ! | CTCATCTTCTGGTGATGAGG+GGG | + | chr2_4:57482581-57482600 | Msa0337440:CDS | 50.0% |
| ! | TCATCTTCTGGTGATGAGGG+GGG | + | chr2_4:57482582-57482601 | Msa0337440:CDS | 50.0% |
| GGACTTGCCATTGACGATGA+GGG | - | chr2_4:57482663-57482682 | None:intergenic | 50.0% | |
| AGGACTTGCCATTGACGATG+AGG | - | chr2_4:57482664-57482683 | None:intergenic | 50.0% | |
| TCGTCAATGGCAAGTCCTGA+TGG | + | chr2_4:57482666-57482685 | Msa0337440:CDS | 50.0% | |
| TCAATGGCAAGTCCTGATGG+TGG | + | chr2_4:57482669-57482688 | Msa0337440:CDS | 50.0% | |
| AAATCGAGGAGCTTCTAGGC+TGG | + | chr2_4:57482725-57482744 | Msa0337440:CDS | 50.0% | |
| ACAAGATATGGCAGTGGTGG+TGG | + | chr2_4:57482798-57482817 | Msa0337440:CDS | 50.0% | |
| CCTAGACATTCGACCACTAC+GGG | - | chr2_4:57482841-57482860 | None:intergenic | 50.0% | |
| CAGTGTGTGTTGTCAACCTC+TGG | - | chr2_4:57483223-57483242 | None:intergenic | 50.0% | |
| AGCTGATGAGGATTCAGTCC+TGG | + | chr2_4:57483567-57483586 | Msa0337440:CDS | 50.0% | |
| GATAATACTTGTGTGGGGGG+AGG | - | chr2_4:57483856-57483875 | None:intergenic | 50.0% | |
| GCATACAAGAGGAAGGTCTG+AGG | + | chr2_4:57483932-57483951 | Msa0337440:CDS | 50.0% | |
| CTCGGGTAAGGAACGCTTCT+GGG | - | chr2_4:57478352-57478371 | None:intergenic | 55.0% | |
| ACTCGGGTAAGGAACGCTTC+TGG | - | chr2_4:57478353-57478372 | None:intergenic | 55.0% | |
| GCGTTCCTTACCCGAGTCAA+TGG | + | chr2_4:57478356-57478375 | Msa0337440:CDS | 55.0% | |
| GTTCGCGGTGATGCTTGACA+TGG | - | chr2_4:57478422-57478441 | None:intergenic | 55.0% | |
| GGTCGATGAAGTGTGGTTCG+CGG | - | chr2_4:57478437-57478456 | None:intergenic | 55.0% | |
| !! | CTGCATGTTTGGATTGGCGG+TGG | - | chr2_4:57479620-57479639 | None:intergenic | 55.0% |
| GGCACCTAAAGGCCTGTCTA+AGG | - | chr2_4:57480197-57480216 | None:intergenic | 55.0% | |
| GACAGGCCTTTAGGTGCCTT+TGG | + | chr2_4:57480199-57480218 | Msa0337440:intron | 55.0% | |
| CACAATGTGTGCGGCAAGCA+GGG | - | chr2_4:57481870-57481889 | None:intergenic | 55.0% | |
| GACGGCTAGCACAATGTGTG+CGG | - | chr2_4:57481879-57481898 | None:intergenic | 55.0% | |
| CATTGACGATGAGGGCTGAG+AGG | - | chr2_4:57482655-57482674 | None:intergenic | 55.0% | |
| CTCTCAGCCCTCATCGTCAA+TGG | + | chr2_4:57482653-57482672 | Msa0337440:CDS | 55.0% | |
| AAGCTTACTTGGGGAAGGGG+TGG | + | chr2_4:57482762-57482781 | Msa0337440:CDS | 55.0% | |
| ! | CTTGGGGAAGGGGTGGTTTT+CGG | + | chr2_4:57482769-57482788 | Msa0337440:CDS | 55.0% |
| AACGGCAAGAGTTCCCGTAG+TGG | + | chr2_4:57482825-57482844 | Msa0337440:CDS | 55.0% | |
| CCCGTAGTGGTCGAATGTCT+AGG | + | chr2_4:57482838-57482857 | Msa0337440:CDS | 55.0% | |
| GGTAAGGAACGCTTCTGGGC+TGG | - | chr2_4:57478348-57478367 | None:intergenic | 60.0% | |
| GGCGGTGGCAGAATCACGAT+GGG | - | chr2_4:57479605-57479624 | None:intergenic | 60.0% | |
| TGGCGGTGGCAGAATCACGA+TGG | - | chr2_4:57479606-57479625 | None:intergenic | 60.0% | |
| GGCGTGCGCCTGAACCTAAA+AGG | + | chr2_4:57480105-57480124 | Msa0337440:intron | 60.0% | |
| GCACAATGTGTGCGGCAAGC+AGG | - | chr2_4:57481871-57481890 | None:intergenic | 60.0% | |
| GCTCCTGCAATGGGACAGAG+TGG | - | chr2_4:57482064-57482083 | None:intergenic | 60.0% | |
| !! | GGCAGTGGTGGTGGTAGCAA+CGG | + | chr2_4:57482807-57482826 | Msa0337440:CDS | 60.0% |
| TGGGTGGCAGGCGTTTGAGA+TGG | + | chr2_4:57483973-57483992 | Msa0337440:three_prime_UTR | 60.0% | |
| GGTTCAGGCGCACGCCTATC+TGG | - | chr2_4:57480101-57480120 | None:intergenic | 65.0% | |
| GGGCTGAGAGGAGCGAACTC+TGG | - | chr2_4:57482643-57482662 | None:intergenic | 65.0% | |
| ! | TTGTGTGGGGGGAGGGTGCG+AGG | - | chr2_4:57483848-57483867 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 57478272 | 57484212 | 57478272 | ID=Msa0337440;Name=Msa0337440 |
| chr2_4 | mRNA | 57478272 | 57484212 | 57478272 | ID=Msa0337440-mRNA-1;Parent=Msa0337440;Name=Msa0337440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70|0.88|0.9|1|1|1|10|260|489 |
| chr2_4 | exon | 57478272 | 57478633 | 57478272 | ID=Msa0337440-mRNA-1:exon:17469;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57478792 | 57478828 | 57478792 | ID=Msa0337440-mRNA-1:exon:17470;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57480725 | 57480783 | 57480725 | ID=Msa0337440-mRNA-1:exon:17471;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57481623 | 57481704 | 57481623 | ID=Msa0337440-mRNA-1:exon:17472;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57481855 | 57481975 | 57481855 | ID=Msa0337440-mRNA-1:exon:17473;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57482080 | 57482121 | 57482080 | ID=Msa0337440-mRNA-1:exon:17474;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57482384 | 57482902 | 57482384 | ID=Msa0337440-mRNA-1:exon:17475;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57483030 | 57483137 | 57483030 | ID=Msa0337440-mRNA-1:exon:17476;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57483481 | 57483663 | 57483481 | ID=Msa0337440-mRNA-1:exon:17477;Parent=Msa0337440-mRNA-1 |
| chr2_4 | exon | 57483926 | 57484212 | 57483926 | ID=Msa0337440-mRNA-1:exon:17478;Parent=Msa0337440-mRNA-1 |
| chr2_4 | five_prime_UTR | 57478272 | 57478341 | 57478272 | ID=Msa0337440-mRNA-1:five_prime_utr;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57478342 | 57478633 | 57478342 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57478792 | 57478828 | 57478792 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57480725 | 57480783 | 57480725 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57481623 | 57481704 | 57481623 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57481855 | 57481975 | 57481855 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57482080 | 57482121 | 57482080 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57482384 | 57482902 | 57482384 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57483030 | 57483137 | 57483030 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57483481 | 57483663 | 57483481 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | CDS | 57483926 | 57483952 | 57483926 | ID=Msa0337440-mRNA-1:cds;Parent=Msa0337440-mRNA-1 |
| chr2_4 | three_prime_UTR | 57483953 | 57484212 | 57483953 | ID=Msa0337440-mRNA-1:three_prime_utr;Parent=Msa0337440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
