AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0966400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966400 MtrunA17_Chr6g0488901 90.698 215 14 3 1 210 1 214 5.78e-124 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966400 AT5G58110.1 57.653 196 80 2 16 210 3 196 1.05e-74 224

Find 47 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACGTCACTCCTCCTTTA+AGG 0.166511 6_3:-94598613 None:intergenic
TGTTACTTCTTCTCATCAAT+TGG 0.222046 6_3:+94598763 Msa0966400:CDS
CTTTGAGTTCTTGTTCAAAT+TGG 0.226142 6_3:-94601278 None:intergenic
TTGGGCTATTCCTAGAATTA+AGG 0.262161 6_3:+94598835 Msa0966400:CDS
AGTAAGTAAACCTTAATTCT+AGG 0.282854 6_3:-94598845 None:intergenic
AAATCAATGGAGTCCCTTAA+AGG 0.308751 6_3:+94598599 Msa0966400:exon
CAGCGTCGTCGTATACTTAC+TGG 0.323527 6_3:+94598672 Msa0966400:CDS
GTTACTTCTTCTCATCAATT+GGG 0.369463 6_3:+94598764 Msa0966400:CDS
TGGTGAACTGGATGATTTGC+AGG 0.372496 6_3:+94599498 Msa0966400:CDS
CTCATCAATTGGGTTCTGCT+TGG 0.379523 6_3:+94598774 Msa0966400:CDS
GGAGATCTCATTTGGTGAAC+TGG 0.386323 6_3:+94599486 Msa0966400:CDS
ACTAACATCTCCAACACATT+TGG 0.402013 6_3:-94599015 None:intergenic
CTTGGAATCGTGCTGGCACT+TGG 0.404894 6_3:+94598792 Msa0966400:CDS
TGGAGGGCATATCGATGTTC+CGG 0.410186 6_3:+94599465 Msa0966400:CDS
GATGTTCCGGAGATCTCATT+TGG 0.428887 6_3:+94599478 Msa0966400:CDS
CAGGAATTGCTCATTTCTGT+GGG 0.441867 6_3:+94598942 Msa0966400:intron
TGACGTCACTCCTCCTTTAA+GGG 0.443834 6_3:-94598612 None:intergenic
TCTGCCAGAGGAGAATGATA+TGG 0.453679 6_3:-94598967 None:intergenic
TCAGGAATTGCTCATTTCTG+TGG 0.456847 6_3:+94598941 Msa0966400:intron
CAAGGAAATAAGAAGTTGCT+TGG 0.467113 6_3:+94599445 Msa0966400:CDS
AAGAGAAATCTCTTAACCAT+TGG 0.487347 6_3:+94598816 Msa0966400:CDS
AGAGAAATCTCTTAACCATT+GGG 0.488159 6_3:+94598817 Msa0966400:CDS
AAGAACTCAAAGATAGATAG+TGG 0.488748 6_3:+94601289 Msa0966400:three_prime_UTR
CGTCGTATACTTACTGGGTT+CGG 0.496847 6_3:+94598678 Msa0966400:CDS
AAGAACTCAAAGATAGATAG+TGG 0.501118 6_3:+94601247 Msa0966400:CDS
GGTTCCATATCATTCTCCTC+TGG 0.510440 6_3:+94598963 Msa0966400:CDS
GAGGAAGAAGTTTCGAGAAG+AGG 0.512289 6_3:+94598539 Msa0966400:five_prime_UTR
GGAAATAAGAAGTTGCTTGG+AGG 0.512423 6_3:+94599448 Msa0966400:CDS
TTGTTGAAGAATCAAATCAA+TGG 0.513280 6_3:+94598586 Msa0966400:exon
TACAATTGGATACAGGGGAA+TGG 0.527980 6_3:+94599416 Msa0966400:intron
TTATTTATTATAGGCACTTG+TGG 0.531337 6_3:+94599233 Msa0966400:intron
GGTTCTGCTTGGAATCGTGC+TGG 0.531758 6_3:+94598785 Msa0966400:CDS
GAAATAAGAAGTTGCTTGGA+GGG 0.541741 6_3:+94599449 Msa0966400:CDS
ATATCATTCTCCTCTGGCAG+AGG 0.546286 6_3:+94598969 Msa0966400:CDS
AATTGAGAACAACGTCTACA+TGG 0.561907 6_3:-94601318 None:intergenic
GAGCTGTCCTTAAAAGTGAA+AGG 0.567172 6_3:+94599294 Msa0966400:CDS
AGTTCACCAAATGAGATCTC+CGG 0.570544 6_3:-94599484 None:intergenic
CAAGATGTAACCAAATGTGT+TGG 0.572691 6_3:+94599005 Msa0966400:CDS
AGTGAGACTTAATGAAGCAT+CGG 0.591789 6_3:+94601137 Msa0966400:CDS
TTGTGCTGTGCCTCTGCCAG+AGG 0.600109 6_3:-94598979 None:intergenic
TTGGAATCGTGCTGGCACTT+GGG 0.601928 6_3:+94598793 Msa0966400:CDS
GGAAGTAATAGTGAGAGAGA+CGG 0.604735 6_3:+94598560 Msa0966400:five_prime_UTR
TTTATTATAGGCACTTGTGG+TGG 0.610822 6_3:+94599236 Msa0966400:intron
ACAGGGGAATGGATTATACA+AGG 0.613504 6_3:+94599427 Msa0966400:intron
AGCGTCGTCGTATACTTACT+GGG 0.623746 6_3:+94598673 Msa0966400:CDS
TAATTCTAGGAATAGCCCAA+TGG 0.650376 6_3:-94598832 None:intergenic
TCAATGGAGTCCCTTAAAGG+AGG 0.652035 6_3:+94598602 Msa0966400:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTTATTTATTAT+AGG + chr6_3:94599224-94599243 Msa0966400:intron 0.0%
!! TTAATTTCACTATTATAAAT+TGG - chr6_3:94600106-94600125 None:intergenic 10.0%
!!! TTGATTATTTCAATTTTAAA+TGG + chr6_3:94600266-94600285 Msa0966400:intron 10.0%
!!! TTCAGTATTTAAAATTGATA+GGG - chr6_3:94600218-94600237 None:intergenic 15.0%
!!! ATTCAGTATTTAAAATTGAT+AGG - chr6_3:94600219-94600238 None:intergenic 15.0%
!!! TTTTTTTTTCATTATACAGA+TGG + chr6_3:94601113-94601132 Msa0966400:intron 15.0%
!! TAGAATTTGAATTTGAAGAT+AGG - chr6_3:94599065-94599084 None:intergenic 20.0%
!!! TATAAGTGATGTTTTACAAT+TGG + chr6_3:94599402-94599421 Msa0966400:intron 20.0%
!! GTGATAAAATCAATAATAAG+AGG - chr6_3:94599526-94599545 None:intergenic 20.0%
!! ATTTAAATCAATATCCTTCT+CGG - chr6_3:94599872-94599891 None:intergenic 20.0%
!!! ATTTGGTGAGAATTATAATT+GGG + chr6_3:94600039-94600058 Msa0966400:intron 20.0%
!! TTCACTATTATAAATTGGTA+GGG - chr6_3:94600101-94600120 None:intergenic 20.0%
!! TTTCACTATTATAAATTGGT+AGG - chr6_3:94600102-94600121 None:intergenic 20.0%
!! AAGAACACAAAAATTTATGT+TGG + chr6_3:94600379-94600398 Msa0966400:intron 20.0%
!!! ATTTTTGTACATAACATGTT+TGG + chr6_3:94600523-94600542 Msa0966400:intron 20.0%
!! AATCGATATAATGATCAAAA+GGG - chr6_3:94600809-94600828 None:intergenic 20.0%
!! AACGGTTATATAAATCAATA+CGG - chr6_3:94601007-94601026 None:intergenic 20.0%
! TTGTTGAAGAATCAAATCAA+TGG + chr6_3:94598586-94598605 Msa0966400:exon 25.0%
! AGTAAGTAAACCTTAATTCT+AGG - chr6_3:94598848-94598867 None:intergenic 25.0%
!!! TCATTTTGTTACTTTGTTTC+AGG + chr6_3:94598923-94598942 Msa0966400:intron 25.0%
! TTATTTATTATAGGCACTTG+TGG + chr6_3:94599233-94599252 Msa0966400:intron 25.0%
!! ATGTTTTACAATTGGATACA+GGG + chr6_3:94599410-94599429 Msa0966400:intron 25.0%
!!! GAGAAGGATATTGATTTAAA+TGG + chr6_3:94599871-94599890 Msa0966400:intron 25.0%
! TCATTCACACTAGATTATTA+TGG + chr6_3:94599911-94599930 Msa0966400:intron 25.0%
! AAGCATTTGTATTGAGAATA+GGG + chr6_3:94599996-94600015 Msa0966400:intron 25.0%
!! CATTTGGTGAGAATTATAAT+TGG + chr6_3:94600038-94600057 Msa0966400:intron 25.0%
! TGAGAATTATAATTGGGATT+AGG + chr6_3:94600045-94600064 Msa0966400:intron 25.0%
! GAGAATTATAATTGGGATTA+GGG + chr6_3:94600046-94600065 Msa0966400:intron 25.0%
!!! ACACTTACAATTCTAGTTTT+GGG - chr6_3:94600334-94600353 None:intergenic 25.0%
!!! TACACTTACAATTCTAGTTT+TGG - chr6_3:94600335-94600354 None:intergenic 25.0%
!! ACTTGCTAATAACTACTAAT+TGG - chr6_3:94600628-94600647 None:intergenic 25.0%
! AATTAGTAGTTATTAGCAAG+TGG + chr6_3:94600627-94600646 Msa0966400:intron 25.0%
! ATTAGTAGTTATTAGCAAGT+GGG + chr6_3:94600628-94600647 Msa0966400:intron 25.0%
! GAATCGATATAATGATCAAA+AGG - chr6_3:94600810-94600829 None:intergenic 25.0%
!! ATGCCAAATTTTCCAAATAA+AGG + chr6_3:94600855-94600874 Msa0966400:intron 25.0%
! TGTTACTTCTTCTCATCAAT+TGG + chr6_3:94598763-94598782 Msa0966400:CDS 30.0%
GTTACTTCTTCTCATCAATT+GGG + chr6_3:94598764-94598783 Msa0966400:CDS 30.0%
AAGAGAAATCTCTTAACCAT+TGG + chr6_3:94598816-94598835 Msa0966400:CDS 30.0%
AGAGAAATCTCTTAACCATT+GGG + chr6_3:94598817-94598836 Msa0966400:CDS 30.0%
GAATGAAAGAGTAATTGACT+CGG - chr6_3:94598892-94598911 None:intergenic 30.0%
GCAAAGTAAAGAAGAACAAT+TGG - chr6_3:94599360-94599379 None:intergenic 30.0%
! GATGTTTTACAATTGGATAC+AGG + chr6_3:94599409-94599428 Msa0966400:intron 30.0%
! TGTTTTACAATTGGATACAG+GGG + chr6_3:94599411-94599430 Msa0966400:intron 30.0%
!!! TGGATTTTGGGTTTTTTGTA+TGG + chr6_3:94599597-94599616 Msa0966400:intron 30.0%
GGCATAAACCAAATGAAAAA+AGG - chr6_3:94599628-94599647 None:intergenic 30.0%
!! TGTCGTAATTTGTTCTGTTA+TGG - chr6_3:94599649-94599668 None:intergenic 30.0%
TAAAATTGTCTTCCGTGATT+TGG + chr6_3:94599766-94599785 Msa0966400:intron 30.0%
AAAATTGTCTTCCGTGATTT+GGG + chr6_3:94599767-94599786 Msa0966400:intron 30.0%
! TATCAGTGAGATTAGCTATA+AGG - chr6_3:94599945-94599964 None:intergenic 30.0%
CAAGCATTTGTATTGAGAAT+AGG + chr6_3:94599995-94600014 Msa0966400:intron 30.0%
AATTATAATTGGGATTAGGG+AGG + chr6_3:94600049-94600068 Msa0966400:intron 30.0%
ATTATAATTGGGATTAGGGA+GGG + chr6_3:94600050-94600069 Msa0966400:intron 30.0%
! TTAGATCTCTTTTTGTGGTT+TGG + chr6_3:94600075-94600094 Msa0966400:intron 30.0%
AATACTCCTTGTATTATACG+TGG + chr6_3:94600187-94600206 Msa0966400:intron 30.0%
TCAAAAGTTGTCTTCAAAAC+TGG - chr6_3:94600434-94600453 None:intergenic 30.0%
AAGATCATAATCTATGTGGT+GGG - chr6_3:94600584-94600603 None:intergenic 30.0%
AAAGATCATAATCTATGTGG+TGG - chr6_3:94600585-94600604 None:intergenic 30.0%
CAGAAAGATCATAATCTATG+TGG - chr6_3:94600588-94600607 None:intergenic 30.0%
!! TGCATGATTAGTTCTGTTAA+TGG + chr6_3:94600658-94600677 Msa0966400:intron 30.0%
!!! TCTTTTTTCCTTTGCACTAT+AGG + chr6_3:94600732-94600751 Msa0966400:intron 30.0%
! AGGCCTTTATTTGGAAAATT+TGG - chr6_3:94600861-94600880 None:intergenic 30.0%
GTAAGAATAAGGCCTTTATT+TGG - chr6_3:94600870-94600889 None:intergenic 30.0%
!! AAAAGAATAAGGGTTGATGT+AGG - chr6_3:94600912-94600931 None:intergenic 30.0%
CGAGTACACAAAAAGAATAA+GGG - chr6_3:94600922-94600941 None:intergenic 30.0%
ACGAGTACACAAAAAGAATA+AGG - chr6_3:94600923-94600942 None:intergenic 30.0%
TGTGTACTCGTTTAATCATT+AGG + chr6_3:94600932-94600951 Msa0966400:intron 30.0%
GTGTACTCGTTTAATCATTA+GGG + chr6_3:94600933-94600952 Msa0966400:intron 30.0%
TCGTTTAATCATTAGGGTTA+GGG + chr6_3:94600939-94600958 Msa0966400:intron 30.0%
AAGAACTCAAAGATAGATAG+TGG + chr6_3:94601247-94601266 Msa0966400:CDS 30.0%
! CTTTGAGTTCTTGTTCAAAT+TGG - chr6_3:94601239-94601258 None:intergenic 30.0%
AAGAACTCAAAGATAGATAG+TGG + chr6_3:94601247-94601266 Msa0966400:CDS 30.0%
AAATCAATGGAGTCCCTTAA+AGG + chr6_3:94598599-94598618 Msa0966400:exon 35.0%
! TAATTCTAGGAATAGCCCAA+TGG - chr6_3:94598835-94598854 None:intergenic 35.0%
TTGGGCTATTCCTAGAATTA+AGG + chr6_3:94598835-94598854 Msa0966400:CDS 35.0%
CAAGATGTAACCAAATGTGT+TGG + chr6_3:94599005-94599024 Msa0966400:CDS 35.0%
ACTAACATCTCCAACACATT+TGG - chr6_3:94599018-94599037 None:intergenic 35.0%
CATCGATCTGTCTTATACAT+TGG - chr6_3:94599191-94599210 None:intergenic 35.0%
TTTATTATAGGCACTTGTGG+TGG + chr6_3:94599236-94599255 Msa0966400:intron 35.0%
GTGGCAACACAATAATAGTA+AGG - chr6_3:94599331-94599350 None:intergenic 35.0%
GAAGAACAATTGGATTGAAG+TGG - chr6_3:94599350-94599369 None:intergenic 35.0%
CAAGGAAATAAGAAGTTGCT+TGG + chr6_3:94599445-94599464 Msa0966400:CDS 35.0%
GAAATAAGAAGTTGCTTGGA+GGG + chr6_3:94599449-94599468 Msa0966400:CDS 35.0%
TTACATGTCTAGACGTTGAT+TGG + chr6_3:94599577-94599596 Msa0966400:intron 35.0%
!! TCTAGACGTTGATTGGATTT+TGG + chr6_3:94599584-94599603 Msa0966400:intron 35.0%
!! CTAGACGTTGATTGGATTTT+GGG + chr6_3:94599585-94599604 Msa0966400:intron 35.0%
!!! TGGTTCGTCCTTTTTTCATT+TGG + chr6_3:94599617-94599636 Msa0966400:intron 35.0%
AATTACGACACTATGCTAGT+AGG + chr6_3:94599659-94599678 Msa0966400:intron 35.0%
TGTTCTCCCAATATATGCAT+TGG + chr6_3:94599690-94599709 Msa0966400:intron 35.0%
CTAATCTCACTGATAGAAAC+TGG + chr6_3:94599950-94599969 Msa0966400:intron 35.0%
TGAGAAGGATGGTATTCATT+TGG + chr6_3:94600022-94600041 Msa0966400:intron 35.0%
!!! GGGTTTTAGATCTCTTTTTG+TGG + chr6_3:94600070-94600089 Msa0966400:intron 35.0%
GCAAAACCACGTATAATACA+AGG - chr6_3:94600196-94600215 None:intergenic 35.0%
TTGTCTTCAAAACTGGATGT+AGG - chr6_3:94600427-94600446 None:intergenic 35.0%
! ATAATCTATGTGGTGGGATA+AGG - chr6_3:94600578-94600597 None:intergenic 35.0%
ACTTCAAAATCACCTACAAC+AGG - chr6_3:94600708-94600727 None:intergenic 35.0%
AAAGAATGCCTATAGTGCAA+AGG - chr6_3:94600743-94600762 None:intergenic 35.0%
TAATGATCAAAAGGGTCAAC+TGG - chr6_3:94600801-94600820 None:intergenic 35.0%
AAATTTGGCATTAATGCTGG+TGG - chr6_3:94600846-94600865 None:intergenic 35.0%
GGAAAATTTGGCATTAATGC+TGG - chr6_3:94600849-94600868 None:intergenic 35.0%
GGGTTCAATAGGTAAGAATA+AGG - chr6_3:94600881-94600900 None:intergenic 35.0%
CTCGTTTAATCATTAGGGTT+AGG + chr6_3:94600938-94600957 Msa0966400:intron 35.0%
GAGTTAATAACACGTGCAAA+CGG - chr6_3:94601025-94601044 None:intergenic 35.0%
AGTGAGACTTAATGAAGCAT+CGG + chr6_3:94601137-94601156 Msa0966400:CDS 35.0%
!!! AGCTATTTTTACAGCCTGTT+CGG + chr6_3:94601202-94601221 Msa0966400:CDS 35.0%
GGAAGTAATAGTGAGAGAGA+CGG + chr6_3:94598560-94598579 Msa0966400:five_prime_UTR 40.0%
! AGCTTTTGTGGAACAGGTAA+AGG - chr6_3:94598725-94598744 None:intergenic 40.0%
! GATTGTTGCTGTAGCTTTTG+TGG - chr6_3:94598737-94598756 None:intergenic 40.0%
!! AAGAGTAATTGACTCGGTGT+AGG - chr6_3:94598886-94598905 None:intergenic 40.0%
TCAGGAATTGCTCATTTCTG+TGG + chr6_3:94598941-94598960 Msa0966400:intron 40.0%
CAGGAATTGCTCATTTCTGT+GGG + chr6_3:94598942-94598961 Msa0966400:intron 40.0%
GAGCTGTCCTTAAAAGTGAA+AGG + chr6_3:94599294-94599313 Msa0966400:CDS 40.0%
!! CGACTCACCTTTCACTTTTA+AGG - chr6_3:94599304-94599323 None:intergenic 40.0%
TACAATTGGATACAGGGGAA+TGG + chr6_3:94599416-94599435 Msa0966400:intron 40.0%
!! ACAGGGGAATGGATTATACA+AGG + chr6_3:94599427-94599446 Msa0966400:intron 40.0%
GGAAATAAGAAGTTGCTTGG+AGG + chr6_3:94599448-94599467 Msa0966400:CDS 40.0%
AGTTCACCAAATGAGATCTC+CGG - chr6_3:94599487-94599506 None:intergenic 40.0%
!!! CACTTTTCAGACACTGACTT+TGG + chr6_3:94599543-94599562 Msa0966400:intron 40.0%
!! TCAGACACTGACTTTGGAAA+TGG + chr6_3:94599549-94599568 Msa0966400:intron 40.0%
CGTGCACCAATGCATATATT+GGG - chr6_3:94599699-94599718 None:intergenic 40.0%
ACGTGCACCAATGCATATAT+TGG - chr6_3:94599700-94599719 None:intergenic 40.0%
CTTAATAGCCACACATGTTG+TGG + chr6_3:94599734-94599753 Msa0966400:intron 40.0%
! CATCTTTTCCACAACATGTG+TGG - chr6_3:94599745-94599764 None:intergenic 40.0%
CTACATACAAGCCCAAATCA+CGG - chr6_3:94599781-94599800 None:intergenic 40.0%
GATTTGGGCTTGTATGTAGA+AGG + chr6_3:94599782-94599801 Msa0966400:intron 40.0%
GGGAGATCAAGAAAAACCTT+AGG + chr6_3:94599838-94599857 Msa0966400:intron 40.0%
! TCACTGATAGAAACTGGTTC+AGG + chr6_3:94599956-94599975 Msa0966400:intron 40.0%
GTTAAGCCACTAAAGTCTTG+TGG + chr6_3:94600401-94600420 Msa0966400:intron 40.0%
AAATCACCTACAACAGGACA+TGG - chr6_3:94600702-94600721 None:intergenic 40.0%
!! CATTAATGCTGGTGGACTAA+GGG - chr6_3:94600838-94600857 None:intergenic 40.0%
AGGACAATGAAGGGTTCAAT+AGG - chr6_3:94600892-94600911 None:intergenic 40.0%
! GGTTGATGTAGGACAATGAA+GGG - chr6_3:94600901-94600920 None:intergenic 40.0%
!!! GCTATTTTTACAGCCTGTTC+GGG + chr6_3:94601203-94601222 Msa0966400:CDS 40.0%
GAGGAAGAAGTTTCGAGAAG+AGG + chr6_3:94598539-94598558 Msa0966400:five_prime_UTR 45.0%
TCAATGGAGTCCCTTAAAGG+AGG + chr6_3:94598602-94598621 Msa0966400:exon 45.0%
TGACGTCACTCCTCCTTTAA+GGG - chr6_3:94598615-94598634 None:intergenic 45.0%
ATGACGTCACTCCTCCTTTA+AGG - chr6_3:94598616-94598635 None:intergenic 45.0%
AGCGTCGTCGTATACTTACT+GGG + chr6_3:94598673-94598692 Msa0966400:CDS 45.0%
CGTCGTATACTTACTGGGTT+CGG + chr6_3:94598678-94598697 Msa0966400:CDS 45.0%
! TGCTGTAGCTTTTGTGGAAC+AGG - chr6_3:94598731-94598750 None:intergenic 45.0%
CTCATCAATTGGGTTCTGCT+TGG + chr6_3:94598774-94598793 Msa0966400:CDS 45.0%
GGTTCCATATCATTCTCCTC+TGG + chr6_3:94598963-94598982 Msa0966400:CDS 45.0%
TCTGCCAGAGGAGAATGATA+TGG - chr6_3:94598970-94598989 None:intergenic 45.0%
ATATCATTCTCCTCTGGCAG+AGG + chr6_3:94598969-94598988 Msa0966400:CDS 45.0%
GATGTTCCGGAGATCTCATT+TGG + chr6_3:94599478-94599497 Msa0966400:CDS 45.0%
! GGAGATCTCATTTGGTGAAC+TGG + chr6_3:94599486-94599505 Msa0966400:CDS 45.0%
! TGGTGAACTGGATGATTTGC+AGG + chr6_3:94599498-94599517 Msa0966400:CDS 45.0%
TACGACACTATGCTAGTAGG+AGG + chr6_3:94599662-94599681 Msa0966400:intron 45.0%
GACCAAATAGACGACAAACC+TGG + chr6_3:94599811-94599830 Msa0966400:intron 45.0%
TGCCAGGTTTGTCGTCTATT+TGG - chr6_3:94599816-94599835 None:intergenic 45.0%
ATAGACGACAAACCTGGCAA+AGG + chr6_3:94599817-94599836 Msa0966400:intron 45.0%
TAGACGACAAACCTGGCAAA+GGG + chr6_3:94599818-94599837 Msa0966400:intron 45.0%
TTTCTTGATCTCCCTTTGCC+AGG - chr6_3:94599832-94599851 None:intergenic 45.0%
CTTCTCGGAGATTTGACCTA+AGG - chr6_3:94599857-94599876 None:intergenic 45.0%
CTTAGGTCAAATCTCCGAGA+AGG + chr6_3:94599855-94599874 Msa0966400:intron 45.0%
!! TTGAGAATAGGGTGCTGAGA+AGG + chr6_3:94600007-94600026 Msa0966400:intron 45.0%
TGTAGGCCACAAGACTTTAG+TGG - chr6_3:94600410-94600429 None:intergenic 45.0%
TCCAATCCATGTCCTGTTGT+AGG + chr6_3:94600693-94600712 Msa0966400:intron 45.0%
ACCTACAACAGGACATGGAT+TGG - chr6_3:94600697-94600716 None:intergenic 45.0%
!! GGGTCAACTGGAGTCATTTT+AGG - chr6_3:94600789-94600808 None:intergenic 45.0%
!! GCATTAATGCTGGTGGACTA+AGG - chr6_3:94600839-94600858 None:intergenic 45.0%
!! GGGTTGATGTAGGACAATGA+AGG - chr6_3:94600902-94600921 None:intergenic 45.0%
! TGAAGCAACTTTTCCCGAAC+AGG - chr6_3:94601219-94601238 None:intergenic 45.0%
!!! AATTAATTTTTTCTTTTAAA+TGG + chr6_3:94600120-94600139 Msa0966400:intron 5.0%
CAGCGTCGTCGTATACTTAC+TGG + chr6_3:94598672-94598691 Msa0966400:CDS 50.0%
! TTGGAATCGTGCTGGCACTT+GGG + chr6_3:94598793-94598812 Msa0966400:CDS 50.0%
! TGGAGGGCATATCGATGTTC+CGG + chr6_3:94599465-94599484 Msa0966400:CDS 50.0%
!! GAATAGGGTGCTGAGAAGGA+TGG + chr6_3:94600011-94600030 Msa0966400:intron 50.0%
!!! TGCTGGTGGACTAAGGGTTT+TGG - chr6_3:94600832-94600851 None:intergenic 50.0%
GGTTCTGCTTGGAATCGTGC+TGG + chr6_3:94598785-94598804 Msa0966400:CDS 55.0%
! CTTGGAATCGTGCTGGCACT+TGG + chr6_3:94598792-94598811 Msa0966400:CDS 55.0%
TTGTGCTGTGCCTCTGCCAG+AGG - chr6_3:94598982-94599001 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 94598524 94601338 94598524 ID=Msa0966400;Name=Msa0966400
chr6_3 mRNA 94598524 94601338 94598524 ID=Msa0966400-mRNA-1;Parent=Msa0966400;Name=Msa0966400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=81|1|1|1|1|1|5|72|210
chr6_3 exon 94598524 94598856 94598524 ID=Msa0966400-mRNA-1:exon:17495;Parent=Msa0966400-mRNA-1
chr6_3 exon 94598945 94599031 94598945 ID=Msa0966400-mRNA-1:exon:17496;Parent=Msa0966400-mRNA-1
chr6_3 exon 94599246 94599315 94599246 ID=Msa0966400-mRNA-1:exon:17497;Parent=Msa0966400-mRNA-1
chr6_3 exon 94599431 94599519 94599431 ID=Msa0966400-mRNA-1:exon:17498;Parent=Msa0966400-mRNA-1
chr6_3 exon 94601132 94601338 94601132 ID=Msa0966400-mRNA-1:exon:17499;Parent=Msa0966400-mRNA-1
chr6_3 five_prime_UTR 94598524 94598604 94598524 ID=Msa0966400-mRNA-1:five_prime_utr;Parent=Msa0966400-mRNA-1
chr6_3 CDS 94598605 94598856 94598605 ID=Msa0966400-mRNA-1:cds;Parent=Msa0966400-mRNA-1
chr6_3 CDS 94598945 94599031 94598945 ID=Msa0966400-mRNA-1:cds;Parent=Msa0966400-mRNA-1
chr6_3 CDS 94599246 94599315 94599246 ID=Msa0966400-mRNA-1:cds;Parent=Msa0966400-mRNA-1
chr6_3 CDS 94599431 94599519 94599431 ID=Msa0966400-mRNA-1:cds;Parent=Msa0966400-mRNA-1
chr6_3 CDS 94601132 94601266 94601132 ID=Msa0966400-mRNA-1:cds;Parent=Msa0966400-mRNA-1
chr6_3 three_prime_UTR 94601267 94601338 94601267 ID=Msa0966400-mRNA-1:three_prime_utr;Parent=Msa0966400-mRNA-1
Gene Sequence

>Msa0966400

ATGGAGTCCCTTAAAGGAGGAGTGACGTCATCGTCTTCGTCGTCGAAATCTCAAGAAGAAGAAAAAGCAGCGTCGTCGTATACTTACTGGGTTCGGAATAAAACTGAAGCTGCAGCGCCTTTACCTGTTCCACAAAAGCTACAGCAACAATCTTCTTCTGTTACTTCTTCTCATCAATTGGGTTCTGCTTGGAATCGTGCTGGCACTTGGGAAGAGAAATCTCTTAACCATTGGGCTATTCCTAGAATTAAGGAATTGCTCATTTCTGTGGGTTCCATATCATTCTCCTCTGGCAGAGGCACAGCACAAGTTCAAGATGTAACCAAATGTGTTGGAGATGCACTTGTGGTGGTCGTTCGTAACAAGAAACGTGTCAGTTTCACATATGAGCTGTCCTTAAAAGTGAAAGGGGAATGGATTATACAAGGAAATAAGAAGTTGCTTGGAGGGCATATCGATGTTCCGGAGATCTCATTTGGTGAACTGGATGATTTGCAGATGGAAGTGAGACTTAATGAAGCATCGGATATCTCTCATCAAGATAAAATTGAAATATGCAACGACTTGAAGCTATTTTTACAGCCTGTTCGGGAAAAGTTGCTTCAATTTGAACAAGAACTCAAAGATAGATAG

Protein sequence

>Msa0966400

MESLKGGVTSSSSSSKSQEEEKAASSYTYWVRNKTEAAAPLPVPQKLQQQSSSVTSSHQLGSAWNRAGTWEEKSLNHWAIPRIKELLISVGSISFSSGRGTAQVQDVTKCVGDALVVVVRNKKRVSFTYELSLKVKGEWIIQGNKKLLGGHIDVPEISFGELDDLQMEVRLNEASDISHQDKIEICNDLKLFLQPVREKLLQFEQELKDR*