AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337930 MtrunA17_Chr2g0325581 93.252 163 4 1 1 163 1 156 3.53e-107 310
Msa0337930 MtrunA17_Chr4g0048231 56.164 146 63 1 18 163 8 152 5.40e-48 159
Msa0337930 MtrunA17_Chr4g0072381 33.987 153 90 5 18 163 74 222 5.95e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337930 AT4G21470.1 50.350 143 70 1 21 163 14 155 3.93e-40 139
Msa0337930 AT5G57440.1 32.468 154 93 5 16 162 12 161 1.36e-15 72.0
Msa0337930 AT4G25840.1 32.468 154 93 5 16 162 69 218 2.39e-15 72.0

Find 113 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACGACCAGGTTAAATT+TGG 0.171277 2_4:+58066696 Msa0337930:CDS
GATATTGTCTAGCATTAATT+TGG 0.190588 2_4:+58067965 Msa0337930:three_prime_UTR
TGACAATGACATGATTTATT+AGG 0.215853 2_4:+58069035 Msa0337930:three_prime_UTR
GTTTCCTAAAAGATAGTATT+TGG 0.224765 2_4:-58066804 None:intergenic
TCCATGATTTCACTTATAAA+TGG 0.234521 2_4:+58066762 Msa0337930:three_prime_UTR
GATTGATTTCTTTGATAAAT+TGG 0.236589 2_4:-58064561 None:intergenic
GGAAACAATATTTAGATCTA+TGG 0.242631 2_4:+58066821 Msa0337930:three_prime_UTR
CTATCTTCTTAATTGTAATT+AGG 0.275937 2_4:-58068929 None:intergenic
ATTTAAAACCTGCTTGGAAT+AGG 0.278405 2_4:-58066895 None:intergenic
TATGCTACTGGATCTCTCTT+TGG 0.288514 2_4:+58067485 Msa0337930:three_prime_UTR
TGTTCATCATCTTGCATATT+GGG 0.288714 2_4:+58069124 Msa0337930:three_prime_UTR
ATACTTATGAACTAATAAAT+AGG 0.300820 2_4:-58067350 None:intergenic
TAGAGTTTCAACCTGAGATA+TGG 0.308759 2_4:+58067297 Msa0337930:three_prime_UTR
GAAAGCTTCTCGGTAATTCT+AGG 0.319622 2_4:+58066675 Msa0337930:CDS
TGTTGTGAGTTTCAACTTCA+AGG 0.326749 2_4:+58064212 Msa0337930:CDS
ATAAATTGGTCAGGTGTTAA+TGG 0.327706 2_4:-58064547 None:intergenic
TTTAAAACCTGCTTGGAATA+GGG 0.330977 2_4:-58066894 None:intergenic
TGACTTAGATGGCACACTTT+TGG 0.333049 2_4:+58064271 Msa0337930:CDS
CTCAGATGAATTGGCTCAAT+TGG 0.348700 2_4:-58067455 None:intergenic
AGCAGATAATCTTACAAATC+TGG 0.352546 2_4:-58066729 None:intergenic
GCGAAAATTTCTCATCATAA+AGG 0.372452 2_4:+58066328 Msa0337930:CDS
TGTTGGGATTTACTTTGGTT+GGG 0.381526 2_4:+58067914 Msa0337930:three_prime_UTR
TTGTTGGGATTTACTTTGGT+TGG 0.387188 2_4:+58067913 Msa0337930:three_prime_UTR
TACAAACCACTCAGATGAAT+TGG 0.388436 2_4:-58067464 None:intergenic
CTATTCCTGATCAAGTTGTT+GGG 0.388482 2_4:+58067898 Msa0337930:three_prime_UTR
TAAATTGGTCAGGTGTTAAT+GGG 0.391849 2_4:-58064546 None:intergenic
AGAGTTTCAACCTGAGATAT+GGG 0.396325 2_4:+58067298 Msa0337930:three_prime_UTR
GCATCTTCTGCTCAGATGTA+AGG 0.400910 2_4:-58068262 None:intergenic
TTGTTCATCATCTTGCATAT+TGG 0.401268 2_4:+58069123 Msa0337930:three_prime_UTR
GCTATTCCTGATCAAGTTGT+TGG 0.401793 2_4:+58067897 Msa0337930:three_prime_UTR
GCATTAACAGGGTTGGTGTC+AGG 0.404140 2_4:+58067180 Msa0337930:intron
GAAACGACCAGGTTAAATTT+GGG 0.406964 2_4:+58066697 Msa0337930:CDS
GAACAATAACAGATTGCAAT+TGG 0.408671 2_4:-58064129 None:intergenic
GAAACTTGGGTCAATGGAAA+TGG 0.411253 2_4:+58068802 Msa0337930:intron
CCTCAAACTCTTGCTTGTCT+TGG 0.412349 2_4:+58063944 Msa0337930:five_prime_UTR
CTGAGTGGTTTGTATGCTAC+TGG 0.417425 2_4:+58067473 Msa0337930:three_prime_UTR
CGAATCGGATTGTTGTAAAC+TGG 0.419765 2_4:+58067250 Msa0337930:three_prime_UTR
CCAAGACAAGCAAGAGTTTG+AGG 0.420820 2_4:-58063944 None:intergenic
AAGATGCAAATCTGTCTTGT+TGG 0.421995 2_4:+58068278 Msa0337930:three_prime_UTR
TCCATTTATAAGTGAAATCA+TGG 0.422802 2_4:-58066763 None:intergenic
AGTTAACTGTCTTGTGATTG+AGG 0.433069 2_4:+58067061 Msa0337930:three_prime_UTR
GTTTGAGGCTTTATTCTTCA+CGG 0.434509 2_4:-58063929 None:intergenic
GCAATCTGTTATTGTTCCAT+TGG 0.437377 2_4:+58064135 Msa0337930:five_prime_UTR
AAACTCTTGCTTGTCTTGGA+TGG 0.439615 2_4:+58063948 Msa0337930:five_prime_UTR
GAAAGGAACTTAATAGAGAA+AGG 0.441860 2_4:+58064455 Msa0337930:CDS
CAAGTTGTTGGGATTTACTT+TGG 0.443022 2_4:+58067909 Msa0337930:three_prime_UTR
AATAACAGATTGCAATTGGT+TGG 0.444502 2_4:-58064125 None:intergenic
TGAACAGAAACTTGGGTCAA+TGG 0.445291 2_4:+58068796 Msa0337930:intron
TAAATCCCAACAACTTGATC+AGG 0.454619 2_4:-58067903 None:intergenic
CTTCCTATCTGAATCAACTT+TGG 0.454870 2_4:-58067937 None:intergenic
TCAAGAAGCTGCCAAGAGAA+TGG 0.459379 2_4:+58067028 Msa0337930:three_prime_UTR
ATTAGCACCAGGCAATGCTT+TGG 0.464042 2_4:-58066230 None:intergenic
TGCTTGCACACCCATTCTCT+TGG 0.467412 2_4:-58067039 None:intergenic
TAGCTGCATGAACAGAAACT+TGG 0.469072 2_4:+58068788 Msa0337930:intron
ATTTCTTTGATAAATTGGTC+AGG 0.472127 2_4:-58064556 None:intergenic
TGTTACCTTTCAATATAAAG+AGG 0.474358 2_4:-58064583 None:intergenic
TCCGCAATTTAAAACCTGCT+TGG 0.474960 2_4:-58066901 None:intergenic
GGCGGAAGGCCCCATATCTC+AGG 0.481016 2_4:-58067308 None:intergenic
TCAATCCTCTTTATATTGAA+AGG 0.481719 2_4:+58064578 Msa0337930:CDS
CAAGAAGCTGCCAAGAGAAT+GGG 0.484633 2_4:+58067029 Msa0337930:three_prime_UTR
TTAAAACCTGCTTGGAATAG+GGG 0.488110 2_4:-58066893 None:intergenic
TTGTTGGCTACATAAGATCA+TGG 0.494062 2_4:+58068294 Msa0337930:three_prime_UTR
ATGCCATTGCCTGCAATAGT+TGG 0.495391 2_4:+58069060 Msa0337930:three_prime_UTR
AAAGGAACTTAATAGAGAAA+GGG 0.497760 2_4:+58064456 Msa0337930:CDS
AAGAAATTGTTGCACTCCAA+TGG 0.498431 2_4:-58064151 None:intergenic
GGATCTCTCTTTGGAACCAC+AGG 0.505609 2_4:+58067494 Msa0337930:three_prime_UTR
CGCATATATGTATTCTGTCG+AGG 0.512822 2_4:-58066308 None:intergenic
CGTACCGTCTCGAGGCGAAT+CGG 0.516213 2_4:+58067235 Msa0337930:three_prime_UTR
TTACCAACTATTGCAGGCAA+TGG 0.516577 2_4:-58069063 None:intergenic
CCTAAAAGATAGTATTTGGA+AGG 0.516908 2_4:-58066800 None:intergenic
GGGCCAAAGTTGATTCAGAT+AGG 0.519815 2_4:+58067934 Msa0337930:three_prime_UTR
CATTAACAGGGTTGGTGTCA+GGG 0.521144 2_4:+58067181 Msa0337930:intron
CATGTCATTGTCAATTGTCA+TGG 0.523473 2_4:-58069025 None:intergenic
TAATCTTACAAATCTGGAGC+AGG 0.525021 2_4:-58066723 None:intergenic
GGTTCATTACAATCATCAAA+AGG 0.532256 2_4:-58067329 None:intergenic
AAATCTGTAACAATTAGACT+TGG 0.532356 2_4:-58067006 None:intergenic
TTGATAGAAAAGGCTTTGCA+TGG 0.537091 2_4:+58068889 Msa0337930:three_prime_UTR
GGTGTGCAGAAAGGGCTACA+AGG 0.541336 2_4:+58064401 Msa0337930:intron
CAGGCTTCCCAAATTTAACC+TGG 0.542122 2_4:-58066704 None:intergenic
TGTAATACTGCGGGCTGATG+AGG 0.543483 2_4:-58066974 None:intergenic
GAGTTTGAAGCAAGAGCCAT+TGG 0.545929 2_4:-58066286 None:intergenic
TTAGAAGCTTGTAATACTGC+GGG 0.546637 2_4:-58066983 None:intergenic
AGGGAAGAAAACAAGAGGCT+AGG 0.558951 2_4:+58064475 Msa0337930:CDS
CATAAGATCATGGGATAACA+AGG 0.564186 2_4:+58068304 Msa0337930:three_prime_UTR
AAGTCTCCCCTATTCCAAGC+AGG 0.572130 2_4:+58066887 Msa0337930:three_prime_UTR
TTGATAATTCGATTAGCACC+AGG 0.572666 2_4:-58066241 None:intergenic
TCATCATCTTGCATATTGGG+TGG 0.572913 2_4:+58069127 Msa0337930:three_prime_UTR
GCAGCTCATGGTAGCACCAA+AGG 0.573323 2_4:-58064189 None:intergenic
AGCTGCATGAACAGAAACTT+GGG 0.578704 2_4:+58068789 Msa0337930:intron
GTGTGCAGAAAGGGCTACAA+GGG 0.581425 2_4:+58064402 Msa0337930:intron
AGGTTGGAAAGAAAGCTTCT+CGG 0.582150 2_4:+58066665 Msa0337930:intron
CGATCGCAGTATTACGATTG+TGG 0.588732 2_4:+58066939 Msa0337930:three_prime_UTR
CGATTCGCCTCGAGACGGTA+CGG 0.591537 2_4:-58067234 None:intergenic
TGTTGGCTACATAAGATCAT+GGG 0.595071 2_4:+58068295 Msa0337930:three_prime_UTR
AGAGATGCCAAAGCATTGCC+TGG 0.597188 2_4:+58066223 Msa0337930:CDS
TACAATCATCAAAAGGCGGA+AGG 0.600008 2_4:-58067322 None:intergenic
AAACTCACAACAGCAGCTCA+TGG 0.606167 2_4:-58064201 None:intergenic
GAGTTTCAACCTGAGATATG+GGG 0.606172 2_4:+58067299 Msa0337930:three_prime_UTR
GTCACGAGAGGGTAACATGA+AGG 0.616699 2_4:+58063838 None:intergenic
GTTAGAAGCTTGTAATACTG+CGG 0.618333 2_4:-58066984 None:intergenic
CAATCCGATTCGCCTCGAGA+CGG 0.622093 2_4:-58067239 None:intergenic
CAACAATGACGCCAATATTG+TGG 0.623210 2_4:+58064238 Msa0337930:CDS
ATTGAGCCAATTCATCTGAG+TGG 0.630187 2_4:+58067458 Msa0337930:three_prime_UTR
GAGAAAGGGAAGAAAACAAG+AGG 0.633112 2_4:+58064470 Msa0337930:CDS
GTAGTTGCCGTACCGTCTCG+AGG 0.635779 2_4:+58067227 Msa0337930:three_prime_UTR
TGTGGTGTGACTCTGATGTG+TGG 0.641716 2_4:+58063897 Msa0337930:five_prime_UTR
GAGGCTAGGATTGACACAGA+AGG 0.647156 2_4:+58064489 Msa0337930:CDS
GGGTAACATGAAGGCACGAG+CGG 0.653587 2_4:+58063847 None:intergenic
GCATGGAGGAGACAATAAAG+TGG 0.663023 2_4:+58068906 Msa0337930:three_prime_UTR
ATAGAAAAGGCTTTGCATGG+AGG 0.685290 2_4:+58068892 Msa0337930:three_prime_UTR
GGTAATTCTAGGAAACGACC+AGG 0.692358 2_4:+58066686 Msa0337930:CDS
TCATTACAATCATCAAAAGG+CGG 0.695984 2_4:-58067326 None:intergenic
TGTGCAGAAAGGGCTACAAG+GGG 0.726870 2_4:+58064403 Msa0337930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATATAAAATTTTAAGT+AGG - chr2_4:58066622-58066641 None:intergenic 10.0%
!! TTGTTAAAATTAATCAATAA+AGG - chr2_4:58067585-58067604 None:intergenic 10.0%
!! TATTAAGGTATGAAAAAAAA+AGG - chr2_4:58064630-58064649 None:intergenic 15.0%
!! ATCTACTAAAAAAAATGTTA+AGG - chr2_4:58064714-58064733 None:intergenic 15.0%
!!! TTTATGTCTTTTTTATTTCA+AGG + chr2_4:58066398-58066417 Msa0337930:intron 15.0%
!! TATTTGATGCTTAATAAAAT+TGG + chr2_4:58066635-58066654 Msa0337930:intron 15.0%
!!! TTAATAAAATTGGTTTTTGT+AGG + chr2_4:58066645-58066664 Msa0337930:intron 15.0%
!! ATACTTATGAACTAATAAAT+AGG - chr2_4:58067353-58067372 None:intergenic 15.0%
!!! TAATTTTAACAAATTCAAAG+TGG + chr2_4:58067593-58067612 Msa0337930:intron 15.0%
!!! CATTTTTTAAAAGTTTAACA+TGG + chr2_4:58067823-58067842 Msa0337930:intron 15.0%
!! TACATAATAAATCTTGAATA+TGG + chr2_4:58068165-58068184 Msa0337930:intron 15.0%
!!! TTCATTTTATTATGAATGAA+AGG - chr2_4:58068982-58069001 None:intergenic 15.0%
!!! ATTTTGACAAAACATTATTG+TGG + chr2_4:58063879-58063898 Msa0337930:five_prime_UTR 20.0%
!!! TAGTCTAAAAATCTAAAGTT+TGG - chr2_4:58064085-58064104 None:intergenic 20.0%
!! TTTACTATATCAAAAACCTT+TGG + chr2_4:58064173-58064192 Msa0337930:five_prime_UTR 20.0%
!!! GATTGATTTCTTTGATAAAT+TGG - chr2_4:58064564-58064583 None:intergenic 20.0%
!!! CATTTTTTTTAGTAGATAGA+CGG + chr2_4:58064717-58064736 Msa0337930:intron 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr2_4:58065619-58065638 None:intergenic 20.0%
!! CAAAAATAGAAATATTAAGC+TGG - chr2_4:58065809-58065828 None:intergenic 20.0%
!! TCCATGACTATATATATTTA+GGG - chr2_4:58065871-58065890 None:intergenic 20.0%
!! ATCCATGACTATATATATTT+AGG - chr2_4:58065872-58065891 None:intergenic 20.0%
!! TAAATATATATAGTCATGGA+TGG + chr2_4:58065871-58065890 Msa0337930:intron 20.0%
!! TTGTAACCAATTAATTGATT+AGG + chr2_4:58066547-58066566 Msa0337930:intron 20.0%
!!! AATTAGCCTAATCAATTAAT+TGG - chr2_4:58066556-58066575 None:intergenic 20.0%
!! AATTTCAGCTTAAGATTAAT+AGG + chr2_4:58066572-58066591 Msa0337930:intron 20.0%
!! TGATACAAATATGATTTACA+TGG - chr2_4:58067138-58067157 None:intergenic 20.0%
!!! TTTTTCAAATTAATATTGGC+AGG + chr2_4:58067416-58067435 Msa0337930:three_prime_UTR 20.0%
!!! TTTTCAAATTAATATTGGCA+GGG + chr2_4:58067417-58067436 Msa0337930:three_prime_UTR 20.0%
!! TAACATGAACAAAACAATTT+AGG + chr2_4:58067559-58067578 Msa0337930:intron 20.0%
!!! ACTGAAAAACAATATTTTGA+TGG + chr2_4:58068378-58068397 Msa0337930:intron 20.0%
!!! AAAAACAATATTTTGATGGA+AGG + chr2_4:58068382-58068401 Msa0337930:intron 20.0%
!! CTATCTTCTTAATTGTAATT+AGG - chr2_4:58068932-58068951 None:intergenic 20.0%
!!! TTGCAAAATCATCAATTTTT+TGG - chr2_4:58069096-58069115 None:intergenic 20.0%
! TGGTTAGAAAAATAGATGAA+TGG - chr2_4:58064108-58064127 None:intergenic 25.0%
!!! CTGTGTGAAATTTTGTTTTT+TGG + chr2_4:58064339-58064358 Msa0337930:intron 25.0%
!!! ATTACATTTGTGTTGATGAT+TGG + chr2_4:58064380-58064399 Msa0337930:intron 25.0%
! AAAGGAACTTAATAGAGAAA+GGG + chr2_4:58064456-58064475 Msa0337930:CDS 25.0%
! ATTTCTTTGATAAATTGGTC+AGG - chr2_4:58064559-58064578 None:intergenic 25.0%
! TCAATCCTCTTTATATTGAA+AGG + chr2_4:58064578-58064597 Msa0337930:CDS 25.0%
! TGTTACCTTTCAATATAAAG+AGG - chr2_4:58064586-58064605 None:intergenic 25.0%
!! CAGAGATAGTTCTATTATTA+AGG - chr2_4:58064645-58064664 None:intergenic 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr2_4:58064884-58064903 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr2_4:58064885-58064904 None:intergenic 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr2_4:58064884-58064903 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr2_4:58064885-58064904 None:intergenic 25.0%
! TCCTTATTAATGAGTAAAAC+AGG - chr2_4:58065559-58065578 None:intergenic 25.0%
! TCCCTAAATATATATAGTCA+TGG + chr2_4:58065867-58065886 Msa0337930:intron 25.0%
! ATGTAATTGAAGATTGAACA+TGG + chr2_4:58065964-58065983 Msa0337930:intron 25.0%
!!! TAAAATTGGTTTTTGTAGGT+TGG + chr2_4:58066649-58066668 Msa0337930:intron 25.0%
! TCCATGATTTCACTTATAAA+TGG + chr2_4:58066762-58066781 Msa0337930:three_prime_UTR 25.0%
! TCCATTTATAAGTGAAATCA+TGG - chr2_4:58066766-58066785 None:intergenic 25.0%
! GTTTCCTAAAAGATAGTATT+TGG - chr2_4:58066807-58066826 None:intergenic 25.0%
! GGAAACAATATTTAGATCTA+TGG + chr2_4:58066821-58066840 Msa0337930:three_prime_UTR 25.0%
!!! ACTTTTTCTCTACTGTAAAA+AGG - chr2_4:58066871-58066890 None:intergenic 25.0%
! AAATCTGTAACAATTAGACT+TGG - chr2_4:58067009-58067028 None:intergenic 25.0%
!!! ATTTTTAAAACATTGACCGA+AGG - chr2_4:58067628-58067647 None:intergenic 25.0%
! GATATTGTCTAGCATTAATT+TGG + chr2_4:58067965-58067984 Msa0337930:three_prime_UTR 25.0%
!!! TATTTTTTTGTAGGTAACAC+TGG - chr2_4:58067997-58068016 None:intergenic 25.0%
!!! CTAACTCACTATTTTTTTGT+AGG - chr2_4:58068006-58068025 None:intergenic 25.0%
! CATCATCAAAGAATAAATGA+AGG - chr2_4:58068051-58068070 None:intergenic 25.0%
!!! CATTAATTTGTTAATCACAC+TGG - chr2_4:58068127-58068146 None:intergenic 25.0%
! CAGTGTGATTAACAAATTAA+TGG + chr2_4:58068125-58068144 Msa0337930:intron 25.0%
! TGTGATTAACAAATTAATGG+TGG + chr2_4:58068128-58068147 Msa0337930:intron 25.0%
! TAACTGATTAATGCACATTA+TGG + chr2_4:58068195-58068214 Msa0337930:intron 25.0%
! AACTGATTAATGCACATTAT+GGG + chr2_4:58068196-58068215 Msa0337930:intron 25.0%
! TAACTGTTATGATTGATCAA+TGG + chr2_4:58068583-58068602 Msa0337930:intron 25.0%
! TTAACAAACATGAATGATGT+TGG + chr2_4:58068649-58068668 Msa0337930:intron 25.0%
!! ACAACTTATGATCTTATTTC+AGG - chr2_4:58068694-58068713 None:intergenic 25.0%
! TGAAATAAGATCATAAGTTG+TGG + chr2_4:58068693-58068712 Msa0337930:intron 25.0%
! GAAATAAGATCATAAGTTGT+GGG + chr2_4:58068694-58068713 Msa0337930:intron 25.0%
! ACAAATAAGATACTACCAAT+AGG - chr2_4:58068753-58068772 None:intergenic 25.0%
! TATCAAAAATTGCTGAATGA+TGG - chr2_4:58068875-58068894 None:intergenic 25.0%
!! TCAGCAATTTTTGATAGAAA+AGG + chr2_4:58068879-58068898 Msa0337930:three_prime_UTR 25.0%
! TGACAATGACATGATTTATT+AGG + chr2_4:58069035-58069054 Msa0337930:three_prime_UTR 25.0%
!! AATATTTTACCAACTATTGC+AGG - chr2_4:58069072-58069091 None:intergenic 25.0%
! CATAAATTTTGTGTGATCGT+TGG - chr2_4:58064021-58064040 None:intergenic 30.0%
AATAACAGATTGCAATTGGT+TGG - chr2_4:58064128-58064147 None:intergenic 30.0%
GAACAATAACAGATTGCAAT+TGG - chr2_4:58064132-58064151 None:intergenic 30.0%
AAAAATGACAGCCACAATAT+TGG - chr2_4:58064252-58064271 None:intergenic 30.0%
GAAAGGAACTTAATAGAGAA+AGG + chr2_4:58064455-58064474 Msa0337930:CDS 30.0%
! AATCAGCAGCTTTTATTGTT+AGG + chr2_4:58064512-58064531 Msa0337930:CDS 30.0%
! ATCAGCAGCTTTTATTGTTA+GGG + chr2_4:58064513-58064532 Msa0337930:CDS 30.0%
TAAATTGGTCAGGTGTTAAT+GGG - chr2_4:58064549-58064568 None:intergenic 30.0%
ATAAATTGGTCAGGTGTTAA+TGG - chr2_4:58064550-58064569 None:intergenic 30.0%
ACCAAAGTTTCAATTCCATT+TGG + chr2_4:58064671-58064690 Msa0337930:intron 30.0%
TCCAAATGGAATTGAAACTT+TGG - chr2_4:58064675-58064694 None:intergenic 30.0%
! TTTTCAGTTCACTTTCCAAA+TGG - chr2_4:58064689-58064708 None:intergenic 30.0%
!! TTTTTAGTAGATAGACGGTA+TGG + chr2_4:58064722-58064741 Msa0337930:intron 30.0%
! TTCTAAGAATTGTTAGGCTA+TGG - chr2_4:58064806-58064825 None:intergenic 30.0%
AGCCTAACAATTCTTAGAAA+TGG + chr2_4:58064807-58064826 Msa0337930:intron 30.0%
! CACCATTTCTAAGAATTGTT+AGG - chr2_4:58064812-58064831 None:intergenic 30.0%
CTAACAATTCTTAGAAATGG+TGG + chr2_4:58064810-58064829 Msa0337930:intron 30.0%
AATTCTTAGAAATGGTGGTT+GGG + chr2_4:58064815-58064834 Msa0337930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr2_4:58064883-58064902 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr2_4:58064886-58064905 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr2_4:58064883-58064902 Msa0337930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr2_4:58064883-58064902 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr2_4:58064886-58064905 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr2_4:58064883-58064902 Msa0337930:intron 30.0%
ATTTCGACATTTGTCAATTG+AGG + chr2_4:58065433-58065452 Msa0337930:intron 30.0%
TTAATGAGTAAAACAGGCAA+TGG - chr2_4:58065553-58065572 None:intergenic 30.0%
! GCCTGTTTTACTCATTAATA+AGG + chr2_4:58065555-58065574 Msa0337930:intron 30.0%
TAATAAGGATCTATGAAGCA+CGG + chr2_4:58065570-58065589 Msa0337930:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr2_4:58065650-58065669 Msa0337930:intron 30.0%
TAATCCTTATCTACAAAGCA+CGG - chr2_4:58065728-58065747 None:intergenic 30.0%
TTTCCTCAACAAGTTTCTTA+AGG - chr2_4:58065759-58065778 None:intergenic 30.0%
AGAAATATTAAGCTGGAAAG+TGG - chr2_4:58065802-58065821 None:intergenic 30.0%
AATGCTAAAGAATGTCCTTA+GGG - chr2_4:58065847-58065866 None:intergenic 30.0%
AAATGCTAAAGAATGTCCTT+AGG - chr2_4:58065848-58065867 None:intergenic 30.0%
AATAACTGCAACATAAAGCT+AGG + chr2_4:58065911-58065930 Msa0337930:intron 30.0%
AACTGATATGAGATCATATC+AGG + chr2_4:58065940-58065959 Msa0337930:intron 30.0%
TTAACTGTAGTTACTCAGAA+AGG + chr2_4:58066045-58066064 Msa0337930:intron 30.0%
TGGTCATTTGCTTAAAAAAC+AGG - chr2_4:58066096-58066115 None:intergenic 30.0%
AACCAATTGGTGAATTGAAA+AGG - chr2_4:58066196-58066215 None:intergenic 30.0%
! TTCAATTCACCAATTGGTTT+AGG + chr2_4:58066197-58066216 Msa0337930:intron 30.0%
GCGAAAATTTCTCATCATAA+AGG + chr2_4:58066328-58066347 Msa0337930:CDS 30.0%
!!! TCATAAAGGTATTTTCCTGT+TGG + chr2_4:58066342-58066361 Msa0337930:intron 30.0%
AGCAGATAATCTTACAAATC+TGG - chr2_4:58066732-58066751 None:intergenic 30.0%
CCTAAAAGATAGTATTTGGA+AGG - chr2_4:58066803-58066822 None:intergenic 30.0%
! CCTTCCAAATACTATCTTTT+AGG + chr2_4:58066800-58066819 Msa0337930:three_prime_UTR 30.0%
TTTCTCTACTGTAAAAAGGT+TGG - chr2_4:58066867-58066886 None:intergenic 30.0%
! TTTAAAACCTGCTTGGAATA+GGG - chr2_4:58066897-58066916 None:intergenic 30.0%
! ATTTAAAACCTGCTTGGAAT+AGG - chr2_4:58066898-58066917 None:intergenic 30.0%
TTACATGGAAGAAATTCAAG+TGG - chr2_4:58067123-58067142 None:intergenic 30.0%
TTACTGTAATGTGCATTAAC+AGG + chr2_4:58067168-58067187 Msa0337930:intron 30.0%
TACTGTAATGTGCATTAACA+GGG + chr2_4:58067169-58067188 Msa0337930:intron 30.0%
TCATTACAATCATCAAAAGG+CGG - chr2_4:58067329-58067348 None:intergenic 30.0%
GGTTCATTACAATCATCAAA+AGG - chr2_4:58067332-58067351 None:intergenic 30.0%
ATGAATGACATGTGAAAGTT+GGG - chr2_4:58067531-58067550 None:intergenic 30.0%
TATGAATGACATGTGAAAGT+TGG - chr2_4:58067532-58067551 None:intergenic 30.0%
TTTCCAATTTGAACGGTTTA+AGG - chr2_4:58067688-58067707 None:intergenic 30.0%
!!! GTTTTAAAAACCAAACAGGA+CGG - chr2_4:58067781-58067800 None:intergenic 30.0%
!!! CAGTGTTTTAAAAACCAAAC+AGG - chr2_4:58067785-58067804 None:intergenic 30.0%
ACTGATTAATGCACATTATG+GGG + chr2_4:58068197-58068216 Msa0337930:intron 30.0%
! AGGTAATGGTGATATTTAGA+TGG + chr2_4:58068324-58068343 Msa0337930:intron 30.0%
ATGGTGATATTTAGATGGAA+AGG + chr2_4:58068329-58068348 Msa0337930:intron 30.0%
TCAATGTCAATGATACCTAT+TGG + chr2_4:58068735-58068754 Msa0337930:intron 30.0%
TTGTTCATCATCTTGCATAT+TGG + chr2_4:58069123-58069142 Msa0337930:three_prime_UTR 30.0%
TGTTCATCATCTTGCATATT+GGG + chr2_4:58069124-58069143 Msa0337930:three_prime_UTR 30.0%
!! GTTTGAGGCTTTATTCTTCA+CGG - chr2_4:58063932-58063951 None:intergenic 35.0%
GCAATCTGTTATTGTTCCAT+TGG + chr2_4:58064135-58064154 Msa0337930:five_prime_UTR 35.0%
AAGAAATTGTTGCACTCCAA+TGG - chr2_4:58064154-58064173 None:intergenic 35.0%
TGTTGTGAGTTTCAACTTCA+AGG + chr2_4:58064212-58064231 Msa0337930:CDS 35.0%
!!! GCTGTCATTTTTGACTTAGA+TGG + chr2_4:58064260-58064279 Msa0337930:CDS 35.0%
! GGTGTATTGAGTGAGTTTTT+GGG + chr2_4:58064424-58064443 Msa0337930:CDS 35.0%
!! AGTGAGTTTTTGGGAAAGTA+TGG + chr2_4:58064433-58064452 Msa0337930:CDS 35.0%
!! GTTTTTGGGAAAGTATGGAA+AGG + chr2_4:58064438-58064457 Msa0337930:CDS 35.0%
!! TGTGTATGTGAGTTTTCAAG+TGG - chr2_4:58064759-58064778 None:intergenic 35.0%
AAAACTCACATACACACAAG+TGG + chr2_4:58064763-58064782 Msa0337930:intron 35.0%
AAACTCACATACACACAAGT+GGG + chr2_4:58064764-58064783 Msa0337930:intron 35.0%
CAATTCTTAGAAATGGTGGT+TGG + chr2_4:58064814-58064833 Msa0337930:intron 35.0%
TGAAGCGTGAACATAAATGA+CGG + chr2_4:58065018-58065037 Msa0337930:intron 35.0%
TGAAGCGTGAACATAAATGA+CGG + chr2_4:58065018-58065037 Msa0337930:intron 35.0%
GTTATCAGGTTTCCGTTATT+GGG - chr2_4:58065254-58065273 None:intergenic 35.0%
TGTTATCAGGTTTCCGTTAT+TGG - chr2_4:58065255-58065274 None:intergenic 35.0%
! AATAACGGAAACCTGATAAC+AGG + chr2_4:58065254-58065273 Msa0337930:intron 35.0%
TGATACCATCTTAGAAATCG+TGG + chr2_4:58065303-58065322 Msa0337930:intron 35.0%
!! TGTCCTTAAGAAACTTGTTG+AGG + chr2_4:58065753-58065772 Msa0337930:intron 35.0%
CTTGTTGAGGAAATCAAAAG+TGG + chr2_4:58065766-58065785 Msa0337930:intron 35.0%
! TTTTCTTAACCATTGCCCTA+AGG + chr2_4:58065829-58065848 Msa0337930:intron 35.0%
!! TTTGCTGTTGACAGAAACTA+TGG - chr2_4:58066116-58066135 None:intergenic 35.0%
! CTCCTTTTCAATTCACCAAT+TGG + chr2_4:58066191-58066210 Msa0337930:intron 35.0%
! AATTCACCAATTGGTTTAGG+TGG + chr2_4:58066200-58066219 Msa0337930:intron 35.0%
! TTGATAATTCGATTAGCACC+AGG - chr2_4:58066244-58066263 None:intergenic 35.0%
! CTCGTTGATGAACATCAAAT+AGG - chr2_4:58066371-58066390 None:intergenic 35.0%
! CTTTTCAGTAACGTATTCAG+AGG - chr2_4:58066458-58066477 None:intergenic 35.0%
GAAACGACCAGGTTAAATTT+GGG + chr2_4:58066697-58066716 Msa0337930:CDS 35.0%
! TAATCTTACAAATCTGGAGC+AGG - chr2_4:58066726-58066745 None:intergenic 35.0%
! TCTACTGTAAAAAGGTTGGT+AGG - chr2_4:58066863-58066882 None:intergenic 35.0%
TTAAAACCTGCTTGGAATAG+GGG - chr2_4:58066896-58066915 None:intergenic 35.0%
!!! TCCAAGCAGGTTTTAAATTG+CGG + chr2_4:58066900-58066919 Msa0337930:three_prime_UTR 35.0%
TTAGAAGCTTGTAATACTGC+GGG - chr2_4:58066986-58067005 None:intergenic 35.0%
GTTAGAAGCTTGTAATACTG+CGG - chr2_4:58066987-58067006 None:intergenic 35.0%
AGTTAACTGTCTTGTGATTG+AGG + chr2_4:58067061-58067080 Msa0337930:three_prime_UTR 35.0%
AGAAATATGGGAGACTTACA+AGG - chr2_4:58067090-58067109 None:intergenic 35.0%
GGCTGCACAATAAGAAATAT+GGG - chr2_4:58067102-58067121 None:intergenic 35.0%
TGGCTGCACAATAAGAAATA+TGG - chr2_4:58067103-58067122 None:intergenic 35.0%
TAGAGTTTCAACCTGAGATA+TGG + chr2_4:58067297-58067316 Msa0337930:three_prime_UTR 35.0%
AGAGTTTCAACCTGAGATAT+GGG + chr2_4:58067298-58067317 Msa0337930:three_prime_UTR 35.0%
TACAAACCACTCAGATGAAT+TGG - chr2_4:58067467-58067486 None:intergenic 35.0%
ATCGCAGTTTCCAATTTGAA+CGG - chr2_4:58067695-58067714 None:intergenic 35.0%
! CTATTCCTGATCAAGTTGTT+GGG + chr2_4:58067898-58067917 Msa0337930:three_prime_UTR 35.0%
TAAATCCCAACAACTTGATC+AGG - chr2_4:58067906-58067925 None:intergenic 35.0%
CAAGTTGTTGGGATTTACTT+TGG + chr2_4:58067909-58067928 Msa0337930:three_prime_UTR 35.0%
TTGTTGGGATTTACTTTGGT+TGG + chr2_4:58067913-58067932 Msa0337930:three_prime_UTR 35.0%
TGTTGGGATTTACTTTGGTT+GGG + chr2_4:58067914-58067933 Msa0337930:three_prime_UTR 35.0%
CTTCCTATCTGAATCAACTT+TGG - chr2_4:58067940-58067959 None:intergenic 35.0%
AAGATGCAAATCTGTCTTGT+TGG + chr2_4:58068278-58068297 Msa0337930:three_prime_UTR 35.0%
! TTGTTGGCTACATAAGATCA+TGG + chr2_4:58068294-58068313 Msa0337930:three_prime_UTR 35.0%
! TGTTGGCTACATAAGATCAT+GGG + chr2_4:58068295-58068314 Msa0337930:three_prime_UTR 35.0%
CATAAGATCATGGGATAACA+AGG + chr2_4:58068304-58068323 Msa0337930:three_prime_UTR 35.0%
ATCATGGGATAACAAGGTAA+TGG + chr2_4:58068310-58068329 Msa0337930:intron 35.0%
GGTATCATTGACATTGAGTA+TGG - chr2_4:58068732-58068751 None:intergenic 35.0%
TTGATAGAAAAGGCTTTGCA+TGG + chr2_4:58068889-58068908 Msa0337930:three_prime_UTR 35.0%
CATGTCATTGTCAATTGTCA+TGG - chr2_4:58069028-58069047 None:intergenic 35.0%
AAACTCTTGCTTGTCTTGGA+TGG + chr2_4:58063948-58063967 Msa0337930:five_prime_UTR 40.0%
CAACAATGACGCCAATATTG+TGG + chr2_4:58064238-58064257 Msa0337930:CDS 40.0%
! TGACTTAGATGGCACACTTT+TGG + chr2_4:58064271-58064290 Msa0337930:CDS 40.0%
! TTGATGATTGGTGTGCAGAA+AGG + chr2_4:58064392-58064411 Msa0337930:intron 40.0%
TGATGATTGGTGTGCAGAAA+GGG + chr2_4:58064393-58064412 Msa0337930:intron 40.0%
! GGGTGTATTGAGTGAGTTTT+TGG + chr2_4:58064423-58064442 Msa0337930:CDS 40.0%
GAGAAAGGGAAGAAAACAAG+AGG + chr2_4:58064470-58064489 Msa0337930:CDS 40.0%
GAAGCGTGAACATAAATGAC+GGG + chr2_4:58065019-58065038 Msa0337930:intron 40.0%
ATGTGTTAAGAGTCCCACAT+CGG - chr2_4:58065076-58065095 None:intergenic 40.0%
TCATTTAATCCTGAGCGTGA+GGG - chr2_4:58065100-58065119 None:intergenic 40.0%
TCACGCTCAGGATTAAATGA+CGG + chr2_4:58065100-58065119 Msa0337930:intron 40.0%
ATGTGTTAAGAGTCCCACAT+CGG - chr2_4:58065076-58065095 None:intergenic 40.0%
GAAGCGTGAACATAAATGAC+GGG + chr2_4:58065019-58065038 Msa0337930:intron 40.0%
ACCATCTTAGAAATCGTGGT+TGG + chr2_4:58065307-58065326 Msa0337930:intron 40.0%
CCATCTTAGAAATCGTGGTT+GGG + chr2_4:58065308-58065327 Msa0337930:intron 40.0%
TGTTGTTAAGAGTCCCACAT+CGG - chr2_4:58065413-58065432 None:intergenic 40.0%
CGACATTTGTCAATTGAGGT+AGG + chr2_4:58065437-58065456 Msa0337930:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG + chr2_4:58065656-58065675 Msa0337930:intron 40.0%
AAAGAATGTCCTTAGGGCAA+TGG - chr2_4:58065841-58065860 None:intergenic 40.0%
AACTGCAACATAAAGCTAGG+AGG + chr2_4:58065914-58065933 Msa0337930:intron 40.0%
ACTGTAGTTACTCAGAAAGG+TGG + chr2_4:58066048-58066067 Msa0337930:intron 40.0%
TAGTTACTCAGAAAGGTGGT+TGG + chr2_4:58066052-58066071 Msa0337930:intron 40.0%
ATCTCTCCACCTAAACCAAT+TGG - chr2_4:58066209-58066228 None:intergenic 40.0%
CGCATATATGTATTCTGTCG+AGG - chr2_4:58066311-58066330 None:intergenic 40.0%
ACATCAAATAGGTAGCCAAC+AGG - chr2_4:58066360-58066379 None:intergenic 40.0%
AGGTTGGAAAGAAAGCTTCT+CGG + chr2_4:58066665-58066684 Msa0337930:intron 40.0%
GAAAGCTTCTCGGTAATTCT+AGG + chr2_4:58066675-58066694 Msa0337930:CDS 40.0%
GGAAACGACCAGGTTAAATT+TGG + chr2_4:58066696-58066715 Msa0337930:CDS 40.0%
! TCCGCAATTTAAAACCTGCT+TGG - chr2_4:58066904-58066923 None:intergenic 40.0%
GTAATGTGCATTAACAGGGT+TGG + chr2_4:58067173-58067192 Msa0337930:intron 40.0%
CGAATCGGATTGTTGTAAAC+TGG + chr2_4:58067250-58067269 Msa0337930:three_prime_UTR 40.0%
GAGTTTCAACCTGAGATATG+GGG + chr2_4:58067299-58067318 Msa0337930:three_prime_UTR 40.0%
TACAATCATCAAAAGGCGGA+AGG - chr2_4:58067325-58067344 None:intergenic 40.0%
! CTCAGATGAATTGGCTCAAT+TGG - chr2_4:58067458-58067477 None:intergenic 40.0%
ATTGAGCCAATTCATCTGAG+TGG + chr2_4:58067458-58067477 Msa0337930:three_prime_UTR 40.0%
TATGCTACTGGATCTCTCTT+TGG + chr2_4:58067485-58067504 Msa0337930:three_prime_UTR 40.0%
TTGGGAGTTTCAAAAACCTG+TGG - chr2_4:58067513-58067532 None:intergenic 40.0%
AATCAACTGTCAAGACCTCT+AGG + chr2_4:58067645-58067664 Msa0337930:intron 40.0%
CTGCCTTAAACCGTTCAAAT+TGG + chr2_4:58067682-58067701 Msa0337930:intron 40.0%
!!! GAACGGTTCGGTTATTTTGA+TGG - chr2_4:58067722-58067741 None:intergenic 40.0%
! ACCTAGAGGTCTAGTTTGAA+CGG - chr2_4:58067739-58067758 None:intergenic 40.0%
! GCTATTCCTGATCAAGTTGT+TGG + chr2_4:58067897-58067916 Msa0337930:three_prime_UTR 40.0%
! ATTATGGGGACACATTTTGC+AGG + chr2_4:58068211-58068230 Msa0337930:intron 40.0%
! GACACATTTTGCAGGATGTT+TGG + chr2_4:58068219-58068238 Msa0337930:intron 40.0%
TAGCTGCATGAACAGAAACT+TGG + chr2_4:58068788-58068807 Msa0337930:intron 40.0%
AGCTGCATGAACAGAAACTT+GGG + chr2_4:58068789-58068808 Msa0337930:intron 40.0%
TGAACAGAAACTTGGGTCAA+TGG + chr2_4:58068796-58068815 Msa0337930:intron 40.0%
GAAACTTGGGTCAATGGAAA+TGG + chr2_4:58068802-58068821 Msa0337930:intron 40.0%
ATAGAAAAGGCTTTGCATGG+AGG + chr2_4:58068892-58068911 Msa0337930:three_prime_UTR 40.0%
TTACCAACTATTGCAGGCAA+TGG - chr2_4:58069066-58069085 None:intergenic 40.0%
TCATCATCTTGCATATTGGG+TGG + chr2_4:58069127-58069146 Msa0337930:three_prime_UTR 40.0%
CCAAGACAAGCAAGAGTTTG+AGG - chr2_4:58063947-58063966 None:intergenic 45.0%
CCTCAAACTCTTGCTTGTCT+TGG + chr2_4:58063944-58063963 Msa0337930:five_prime_UTR 45.0%
AAACTCACAACAGCAGCTCA+TGG - chr2_4:58064204-58064223 None:intergenic 45.0%
! GATGGCACACTTTTGGATAC+TGG + chr2_4:58064278-58064297 Msa0337930:CDS 45.0%
AGGGAAGAAAACAAGAGGCT+AGG + chr2_4:58064475-58064494 Msa0337930:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr2_4:58064839-58064858 Msa0337930:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr2_4:58064915-58064934 None:intergenic 45.0%
GTGTGTTAAGAGTCCCACAT+CGG - chr2_4:58064920-58064939 None:intergenic 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr2_4:58064915-58064934 None:intergenic 45.0%
GTGTGTTAAGAGTCCCACAT+CGG - chr2_4:58064920-58064939 None:intergenic 45.0%
ATGTCTAATCCTGAGCGTGA+GGG - chr2_4:58064997-58065016 None:intergenic 45.0%
!! AATGACGGGTGACCCAATAA+CGG + chr2_4:58065033-58065052 Msa0337930:intron 45.0%
AAGAGTCCCACATCGGTATT+GGG - chr2_4:58065069-58065088 None:intergenic 45.0%
TAAGAGTCCCACATCGGTAT+TGG - chr2_4:58065070-58065089 None:intergenic 45.0%
CATTTAATCCTGAGCGTGAG+GGG - chr2_4:58065099-58065118 None:intergenic 45.0%
GTCATTTAATCCTGAGCGTG+AGG - chr2_4:58065101-58065120 None:intergenic 45.0%
CACGCTCAGGATTAAATGAC+GGG + chr2_4:58065101-58065120 Msa0337930:intron 45.0%
! GGCCACAGGTTTTCGTTATT+GGG - chr2_4:58065130-58065149 None:intergenic 45.0%
AAGAGTCCCACATCGGTATT+GGG - chr2_4:58065069-58065088 None:intergenic 45.0%
TAAGAGTCCCACATCGGTAT+TGG - chr2_4:58065070-58065089 None:intergenic 45.0%
ATGTCTAATCCTGAGCGTGA+GGG - chr2_4:58064997-58065016 None:intergenic 45.0%
AACGGAAACCTGATAACAGG+TGG + chr2_4:58065257-58065276 Msa0337930:intron 45.0%
GAGCCTCTTCACGATTCTTT+GGG - chr2_4:58065283-58065302 None:intergenic 45.0%
AGAGCCTCTTCACGATTCTT+TGG - chr2_4:58065284-58065303 None:intergenic 45.0%
! CCCAACCACGATTTCTAAGA+TGG - chr2_4:58065311-58065330 None:intergenic 45.0%
CTAACACAACCCCACAAAAC+CGG + chr2_4:58064839-58064858 Msa0337930:intron 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr2_4:58064915-58064934 None:intergenic 45.0%
GGATCTATGAAGCACGGATA+TGG + chr2_4:58065576-58065595 Msa0337930:intron 45.0%
ATGAAGCACGGATATGGACA+CGG + chr2_4:58065582-58065601 Msa0337930:intron 45.0%
GTGTCCGTGCTTTGTAGATA+AGG + chr2_4:58065721-58065740 Msa0337930:intron 45.0%
ATTAGCACCAGGCAATGCTT+TGG - chr2_4:58066233-58066252 None:intergenic 45.0%
CGCAAAAAATCGTGTGCCAA+TGG + chr2_4:58066270-58066289 Msa0337930:CDS 45.0%
! GAGTTTGAAGCAAGAGCCAT+TGG - chr2_4:58066289-58066308 None:intergenic 45.0%
! GGTAATTCTAGGAAACGACC+AGG + chr2_4:58066686-58066705 Msa0337930:CDS 45.0%
CAGGCTTCCCAAATTTAACC+TGG - chr2_4:58066707-58066726 None:intergenic 45.0%
CGATCGCAGTATTACGATTG+TGG + chr2_4:58066939-58066958 Msa0337930:three_prime_UTR 45.0%
TCAAGAAGCTGCCAAGAGAA+TGG + chr2_4:58067028-58067047 Msa0337930:three_prime_UTR 45.0%
CAAGAAGCTGCCAAGAGAAT+GGG + chr2_4:58067029-58067048 Msa0337930:three_prime_UTR 45.0%
!! CATTAACAGGGTTGGTGTCA+GGG + chr2_4:58067181-58067200 Msa0337930:intron 45.0%
AGCTACAGCTGCAAAAACGA+AGG + chr2_4:58067205-58067224 Msa0337930:three_prime_UTR 45.0%
! CTGAGTGGTTTGTATGCTAC+TGG + chr2_4:58067473-58067492 Msa0337930:three_prime_UTR 45.0%
ACATTGACCGAAGGTTGTGT+CGG - chr2_4:58067619-58067638 None:intergenic 45.0%
TCAAGACCTCTAGGTCATGA+TGG + chr2_4:58067654-58067673 Msa0337930:intron 45.0%
! GAGGTCTAGTTTGAACGGTT+CGG - chr2_4:58067734-58067753 None:intergenic 45.0%
ACCGTTCAAACTAGACCTCT+AGG + chr2_4:58067735-58067754 Msa0337930:intron 45.0%
CAAACTAGACCTCTAGGTCA+AGG + chr2_4:58067741-58067760 Msa0337930:intron 45.0%
CCTCTAGGTCAAGGTTTAAC+CGG + chr2_4:58067750-58067769 Msa0337930:intron 45.0%
ACCAAACAGGACGGTTAAAC+CGG - chr2_4:58067772-58067791 None:intergenic 45.0%
! GGGCCAAAGTTGATTCAGAT+AGG + chr2_4:58067934-58067953 Msa0337930:three_prime_UTR 45.0%
GCATCTTCTGCTCAGATGTA+AGG - chr2_4:58068265-58068284 None:intergenic 45.0%
GAAGGATCTGACTAGTGACT+AGG + chr2_4:58068400-58068419 Msa0337930:intron 45.0%
GCATGGAGGAGACAATAAAG+TGG + chr2_4:58068906-58068925 Msa0337930:three_prime_UTR 45.0%
ATGCCATTGCCTGCAATAGT+TGG + chr2_4:58069060-58069079 Msa0337930:three_prime_UTR 45.0%
!!! TTTTTTAATAAAGTTAAAAA+TGG - chr2_4:58065492-58065511 None:intergenic 5.0%
!!! ATATTTTTTCAAATTAATAT+TGG + chr2_4:58067412-58067431 Msa0337930:three_prime_UTR 5.0%
TGTGGTGTGACTCTGATGTG+TGG + chr2_4:58063897-58063916 Msa0337930:five_prime_UTR 50.0%
GTGTGCAGAAAGGGCTACAA+GGG + chr2_4:58064402-58064421 Msa0337930:intron 50.0%
TGTGCAGAAAGGGCTACAAG+GGG + chr2_4:58064403-58064422 Msa0337930:intron 50.0%
GAGGCTAGGATTGACACAGA+AGG + chr2_4:58064489-58064508 Msa0337930:CDS 50.0%
ACACACAAGTGGGAGATCTC+TGG + chr2_4:58064774-58064793 Msa0337930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr2_4:58064841-58064860 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr2_4:58064852-58064871 None:intergenic 50.0%
TGTCTAATCCTGAGCGTGAG+GGG - chr2_4:58064996-58065015 None:intergenic 50.0%
GATGTCTAATCCTGAGCGTG+AGG - chr2_4:58064998-58065017 None:intergenic 50.0%
! GACCCAATAACGGAAACCTG+TGG + chr2_4:58065043-58065062 Msa0337930:intron 50.0%
GGCCACAGGTTTCCGTTATT+GGG - chr2_4:58065048-58065067 None:intergenic 50.0%
! GCTCAGGATTAAATGACGGG+TGG + chr2_4:58065104-58065123 Msa0337930:intron 50.0%
GGCCCAATAACGAAAACCTG+TGG + chr2_4:58065125-58065144 Msa0337930:intron 50.0%
! GGGCCACAGGTTTTCGTTAT+TGG - chr2_4:58065131-58065150 None:intergenic 50.0%
TGTCTAATCCTGAGCGTGAG+GGG - chr2_4:58064996-58065015 None:intergenic 50.0%
GATGTCTAATCCTGAGCGTG+AGG - chr2_4:58064998-58065017 None:intergenic 50.0%
! GCGTGAACATAAATGACGGG+TGG + chr2_4:58065022-58065041 Msa0337930:intron 50.0%
!! AATGACGGGTGGCCCAATAA+CGG + chr2_4:58065115-58065134 Msa0337930:intron 50.0%
GGCCACAGGTTTCCGTTATT+GGG - chr2_4:58065048-58065067 None:intergenic 50.0%
GGAAACCTGTGGCCCAATAA+CGG + chr2_4:58065239-58065258 Msa0337930:intron 50.0%
TCTTTGGGCCACCTGTTATC+AGG - chr2_4:58065268-58065287 None:intergenic 50.0%
TGGCCCAAAGAATCGTGAAG+AGG + chr2_4:58065277-58065296 Msa0337930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr2_4:58064841-58064860 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr2_4:58064852-58064871 None:intergenic 50.0%
TACAAAGCACGGACACTCCT+CGG - chr2_4:58065717-58065736 None:intergenic 50.0%
!! AGAGATGCCAAAGCATTGCC+TGG + chr2_4:58066223-58066242 Msa0337930:CDS 50.0%
AAGTCTCCCCTATTCCAAGC+AGG + chr2_4:58066887-58066906 Msa0337930:three_prime_UTR 50.0%
! TGTAATACTGCGGGCTGATG+AGG - chr2_4:58066977-58066996 None:intergenic 50.0%
TGCTTGCACACCCATTCTCT+TGG - chr2_4:58067042-58067061 None:intergenic 50.0%
!! GCATTAACAGGGTTGGTGTC+AGG + chr2_4:58067180-58067199 Msa0337930:intron 50.0%
!! GGATCTCTCTTTGGAACCAC+AGG + chr2_4:58067494-58067513 Msa0337930:three_prime_UTR 50.0%
AAAGTGGCCGACACAACCTT+CGG + chr2_4:58067609-58067628 Msa0337930:intron 50.0%
GCTGAACCATCATGACCTAG+AGG - chr2_4:58067663-58067682 None:intergenic 50.0%
CCGGTTAAACCTTGACCTAG+AGG - chr2_4:58067753-58067772 None:intergenic 50.0%
! ACCGGTTTAACCGTCCTGTT+TGG + chr2_4:58067768-58067787 Msa0337930:intron 50.0%
GCAGCTCATGGTAGCACCAA+AGG - chr2_4:58064192-58064211 None:intergenic 55.0%
GGTGTGCAGAAAGGGCTACA+AGG + chr2_4:58064401-58064420 Msa0337930:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr2_4:58064851-58064870 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr2_4:58064853-58064872 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr2_4:58064853-58064872 Msa0337930:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr2_4:58064861-58064880 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr2_4:58064903-58064922 Msa0337930:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr2_4:58064904-58064923 Msa0337930:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr2_4:58064909-58064928 None:intergenic 55.0%
TTGGCCTGACAATGCGTGAG+GGG - chr2_4:58064943-58064962 None:intergenic 55.0%
! GTTGGCCTGACAATGCGTGA+GGG - chr2_4:58064944-58064963 None:intergenic 55.0%
! AGTTGGCCTGACAATGCGTG+AGG - chr2_4:58064945-58064964 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr2_4:58064903-58064922 Msa0337930:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr2_4:58064904-58064923 Msa0337930:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr2_4:58064909-58064928 None:intergenic 55.0%
GTCTAATCCTGAGCGTGAGG+GGG - chr2_4:58064995-58065014 None:intergenic 55.0%
GGGCCACAGGTTTCCGTTAT+TGG - chr2_4:58065049-58065068 None:intergenic 55.0%
CTGTGGCCCAATACCGATGT+GGG + chr2_4:58065060-58065079 Msa0337930:intron 55.0%
TAACACATCCCCTCACGCTC+AGG + chr2_4:58065088-58065107 Msa0337930:intron 55.0%
CTGTGGCCCAATACCGATGT+GGG + chr2_4:58065060-58065079 Msa0337930:intron 55.0%
TAACACATCCCCTCACGCTC+AGG + chr2_4:58065088-58065107 Msa0337930:intron 55.0%
! GGCCCAATAACGGAAACCTG+TGG + chr2_4:58065228-58065247 Msa0337930:intron 55.0%
GGGCCACAGGTTTCCGTTAT+TGG - chr2_4:58065049-58065068 None:intergenic 55.0%
GGTTTCCGTTATTGGGCCAC+AGG - chr2_4:58065226-58065245 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr2_4:58064851-58064870 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr2_4:58064853-58064872 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr2_4:58064853-58064872 Msa0337930:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr2_4:58064861-58064880 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr2_4:58064903-58064922 Msa0337930:intron 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr2_4:58064904-58064923 Msa0337930:intron 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr2_4:58064909-58064928 None:intergenic 55.0%
ACACGACACATGTCCGACAC+TGG + chr2_4:58065679-58065698 Msa0337930:intron 55.0%
CACGACACATGTCCGACACT+GGG + chr2_4:58065680-58065699 Msa0337930:intron 55.0%
! CAATCCGATTCGCCTCGAGA+CGG - chr2_4:58067242-58067261 None:intergenic 55.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr2_4:58064848-58064867 Msa0337930:intron 60.0%
ACACCCCCTCACGCATTGTC+AGG + chr2_4:58064936-58064955 Msa0337930:intron 60.0%
TGGCCTGACAATGCGTGAGG+GGG - chr2_4:58064942-58064961 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG + chr2_4:58064985-58065004 Msa0337930:intron 60.0%
! CCACATCGGTATTGGGCCAC+AGG - chr2_4:58065062-58065081 None:intergenic 60.0%
CCTGTGGCCCAATACCGATG+TGG + chr2_4:58065059-58065078 Msa0337930:intron 60.0%
! CCACATCGGTATTGGGCCAC+AGG - chr2_4:58065062-58065081 None:intergenic 60.0%
CCTGTGGCCCAATACCGATG+TGG + chr2_4:58065059-58065078 Msa0337930:intron 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr2_4:58064848-58064867 Msa0337930:intron 60.0%
GACTAGGCGTGTCCCAGTGT+CGG - chr2_4:58065695-58065714 None:intergenic 60.0%
GTAGTTGCCGTACCGTCTCG+AGG + chr2_4:58067227-58067246 Msa0337930:three_prime_UTR 60.0%
CGATTCGCCTCGAGACGGTA+CGG - chr2_4:58067237-58067256 None:intergenic 60.0%
CGTACCGTCTCGAGGCGAAT+CGG + chr2_4:58067235-58067254 Msa0337930:three_prime_UTR 60.0%
ACTGGGACACGCCTAGTCCG+AGG + chr2_4:58065697-58065716 Msa0337930:intron 65.0%
GCACGGACACTCCTCGGACT+AGG - chr2_4:58065711-58065730 None:intergenic 65.0%
GGCGGAAGGCCCCATATCTC+AGG - chr2_4:58067311-58067330 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 58063848 58069183 58063848 ID=Msa0337930;Name=Msa0337930
chr2_4 mRNA 58063848 58069183 58063848 ID=Msa0337930-mRNA-1;Parent=Msa0337930;Name=Msa0337930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=355|1|1|1|1|0.75|8|1284|163
chr2_4 exon 58063848 58064299 58063848 ID=Msa0337930-mRNA-1:exon:17705;Parent=Msa0337930-mRNA-1
chr2_4 exon 58064410 58064599 58064410 ID=Msa0337930-mRNA-1:exon:17706;Parent=Msa0337930-mRNA-1
chr2_4 exon 58066219 58066349 58066219 ID=Msa0337930-mRNA-1:exon:17707;Parent=Msa0337930-mRNA-1
chr2_4 exon 58066667 58067090 58066667 ID=Msa0337930-mRNA-1:exon:17708;Parent=Msa0337930-mRNA-1
chr2_4 exon 58067190 58067515 58067190 ID=Msa0337930-mRNA-1:exon:17709;Parent=Msa0337930-mRNA-1
chr2_4 exon 58067883 58068016 58067883 ID=Msa0337930-mRNA-1:exon:17710;Parent=Msa0337930-mRNA-1
chr2_4 exon 58068233 58068325 58068233 ID=Msa0337930-mRNA-1:exon:17711;Parent=Msa0337930-mRNA-1
chr2_4 exon 58068803 58069183 58068803 ID=Msa0337930-mRNA-1:exon:17712;Parent=Msa0337930-mRNA-1
chr2_4 five_prime_UTR 58063848 58064202 58063848 ID=Msa0337930-mRNA-1:five_prime_utr;Parent=Msa0337930-mRNA-1
chr2_4 CDS 58064203 58064299 58064203 ID=Msa0337930-mRNA-1:cds;Parent=Msa0337930-mRNA-1
chr2_4 CDS 58064410 58064599 58064410 ID=Msa0337930-mRNA-1:cds;Parent=Msa0337930-mRNA-1
chr2_4 CDS 58066219 58066349 58066219 ID=Msa0337930-mRNA-1:cds;Parent=Msa0337930-mRNA-1
chr2_4 CDS 58066667 58066740 58066667 ID=Msa0337930-mRNA-1:cds;Parent=Msa0337930-mRNA-1
chr2_4 three_prime_UTR 58066741 58067090 58066741 ID=Msa0337930-mRNA-1:three_prime_utr;Parent=Msa0337930-mRNA-1
chr2_4 three_prime_UTR 58067190 58067515 58067190 ID=Msa0337930-mRNA-1:three_prime_utr;Parent=Msa0337930-mRNA-1
chr2_4 three_prime_UTR 58067883 58068016 58067883 ID=Msa0337930-mRNA-1:three_prime_utr;Parent=Msa0337930-mRNA-1
chr2_4 three_prime_UTR 58068233 58068325 58068233 ID=Msa0337930-mRNA-1:three_prime_utr;Parent=Msa0337930-mRNA-1
chr2_4 three_prime_UTR 58068803 58069183 58068803 ID=Msa0337930-mRNA-1:three_prime_utr;Parent=Msa0337930-mRNA-1
Gene Sequence

>Msa0337930

ATGAGCTGCTGTTGTGAGTTTCAACTTCAAGGTTGCAACAATGACGCCAATATTGTGGCTGTCATTTTTGACTTAGATGGCACACTTTTGGATACTGAAAGGGCTACAAGGGGTGTATTGAGTGAGTTTTTGGGAAAGTATGGAAAGGAACTTAATAGAGAAAGGGAAGAAAACAAGAGGCTAGGATTGACACAGAAGGAATCAGCAGCTTTTATTGTTAGGGACTATCAACTCCCATTAACACCTGACCAATTTATCAAAGAAATCAATCCTCTTTATATTGAAAGGTGGAGAGATGCCAAAGCATTGCCTGGTGCTAATCGAATTATCAAACATCTCGCAAAAAATCGTGTGCCAATGGCTCTTGCTTCAAACTCCTCGACAGAATACATATATGCGAAAATTTCTCATCATAAAGGTTGGAAAGAAAGCTTCTCGGTAATTCTAGGAAACGACCAGGTTAAATTTGGGAAGCCTGCTCCAGATTTGTAA
Protein sequence

>Msa0337930

MSCCCEFQLQGCNNDANIVAVIFDLDGTLLDTERATRGVLSEFLGKYGKELNREREENKRLGLTQKESAAFIVRDYQLPLTPDQFIKEINPLYIERWRDAKALPGANRIIKHLAKNRVPMALASNSSTEYIYAKISHHKGWKESFSVILGNDQVKFGKPAPDL*