AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937670 MtrunA17_Chr6g0449211 89.455 569 50 4 15 575 6 572 0.0 1018
Msa0937670 MtrunA17_Chr4g0037641 30.729 192 99 5 358 549 89 246 2.19e-22 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937670 AT5G14460.1 56.419 592 157 13 11 575 23 540 0.0 579
Msa0937670 AT3G57150.1 32.812 192 95 5 358 549 82 239 4.06e-19 91.3

Find 146 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATCACTCTGTGCGGATTT+TGG 0.099638 6_3:+9145598 Msa0937670:CDS
TTAGCGTTTCGAGTGGGTTT+GGG 0.252150 6_3:-9141081 None:intergenic
TTTAGCGTTTCGAGTGGGTT+TGG 0.286303 6_3:-9141082 None:intergenic
TCGCCTTGTCAAAGTGAAAA+AGG 0.292477 6_3:+9142903 Msa0937670:CDS
TCGAGTGGGTTTGGGGAGAT+TGG 0.300053 6_3:-9141073 None:intergenic
GAAAGATAAGCATTATAAAA+TGG 0.301531 6_3:+9141411 Msa0937670:CDS
GGACGGGACTTCCTCATGTT+TGG 0.332155 6_3:+9141941 Msa0937670:CDS
GATAAGTTAAAGATAAGTTT+TGG 0.332339 6_3:-9145922 None:intergenic
GAGAAAAGGAAAAGGGGAAG+AGG 0.335131 6_3:+9141812 Msa0937670:CDS
CTAATTCGAATGCGAATACT+AGG 0.339685 6_3:+9141539 Msa0937670:CDS
CGAGTGGGTTTGGGGAGATT+GGG 0.352164 6_3:-9141072 None:intergenic
CTTATCTTTAACTTATCTTC+AGG 0.360242 6_3:+9145928 Msa0937670:exon
AGAAAAGGAAAAGGGGAAGA+GGG 0.361980 6_3:+9141813 Msa0937670:CDS
AGCTACGCTCTATGTCAAAT+TGG 0.367629 6_3:-9145056 None:intergenic
GACGGGACTTCCTCATGTTT+GGG 0.381101 6_3:+9141942 Msa0937670:CDS
AAGAGGAGGAAGAGAATGTA+TGG 0.383476 6_3:+9141253 Msa0937670:CDS
CGTTGGCAAGTCAACAAAAC+TGG 0.388637 6_3:+9143050 Msa0937670:CDS
GAACCGGGTCGGTTTAATTC+CGG 0.390958 6_3:-9141172 None:intergenic
TCCTAATCAGTGTTTGGATC+AGG 0.395285 6_3:+9141459 Msa0937670:CDS
TGGACTTCATTCACAGTTTG+TGG 0.401629 6_3:+9142871 Msa0937670:CDS
CGTTGGCCCAGGATCGGAGG+GGG 0.415567 6_3:-9141132 None:intergenic
TTGAAGAGGGTATGGGGTTG+TGG 0.418510 6_3:-9141028 None:intergenic
AGATATCAAGGGATGGTTAA+GGG 0.418833 6_3:+9143227 Msa0937670:intron
CGATAAATTAACCACTGAAC+CGG 0.422132 6_3:+9141153 Msa0937670:CDS
TTAGAGTGACTTGTTCTAAA+GGG 0.422161 6_3:+9145566 Msa0937670:CDS
GTCCTCAACTCAACAACTTC+CGG 0.425349 6_3:-9141331 None:intergenic
CAGATATCAAGGGATGGTTA+AGG 0.429332 6_3:+9143226 Msa0937670:intron
TAAAGATGTTAGTGAGAAGA+AGG 0.432499 6_3:+9141846 Msa0937670:CDS
ATGGGGTTGTGGAGAGGAAA+CGG 0.438870 6_3:-9141017 None:intergenic
AGTTCGTATTGAAGAGGGTA+TGG 0.440279 6_3:-9141036 None:intergenic
AGGAAACGGAGAGTGGAGAA+TGG 0.441019 6_3:-9141003 None:intergenic
ACTTACCAATTGAATCTCTT+CGG 0.441065 6_3:-9145765 None:intergenic
GTTGGCCCAGGATCGGAGGG+GGG 0.444090 6_3:-9141131 None:intergenic
AGTTGAGGACTTTGCATAAG+AGG 0.445072 6_3:+9141344 Msa0937670:CDS
AGAGAAAATACTATATTAAG+AGG 0.445273 6_3:+9141236 Msa0937670:CDS
AAGAGGTTGTCGTTAGGAAA+TGG 0.446658 6_3:-9140976 None:intergenic
GTGGAAAGAGAAAAGGAAAA+GGG 0.446810 6_3:+9141805 Msa0937670:CDS
GACTTGGTGCGTAGAATTGT+CGG 0.449462 6_3:+9146048 Msa0937670:three_prime_UTR
TTGGCCCAGGATCGGAGGGG+GGG 0.452065 6_3:-9141130 None:intergenic
CATTTATGATCTTACTAAGT+GGG 0.454496 6_3:+9146088 Msa0937670:three_prime_UTR
AGCCATTGGATCAAGAGTTC+CGG 0.455220 6_3:-9143007 None:intergenic
TAAGGGTTTGAATGTGAAGA+AGG 0.455393 6_3:+9141882 Msa0937670:CDS
GCCTGATCCAAACACTGATT+AGG 0.455892 6_3:-9141460 None:intergenic
AAGCATATTATGGCCCTTTG+TGG 0.460080 6_3:+9145998 Msa0937670:three_prime_UTR
GGGAAGAAAGATGAGGTTGG+TGG 0.462835 6_3:+9141739 Msa0937670:CDS
AACGGAGAGTGGAGAATGGA+TGG 0.468562 6_3:-9140999 None:intergenic
ACTCTTGATCCAATGGCTAC+TGG 0.468893 6_3:+9143012 Msa0937670:CDS
CGAATGCGAATACTAGGGTT+AGG 0.473200 6_3:+9141545 Msa0937670:CDS
GGAAAAGGGGAAGAGGGGTG+TGG 0.481574 6_3:+9141819 Msa0937670:CDS
GGTTGTTGATGATGATAAGT+TGG 0.482315 6_3:+9141603 Msa0937670:CDS
TTAAGAGTTCATTTCTGACT+TGG 0.482408 6_3:+9146032 Msa0937670:three_prime_UTR
TTTAGAGTGACTTGTTCTAA+AGG 0.482622 6_3:+9145565 Msa0937670:CDS
TTCAGTGGTTAATTTATCGT+TGG 0.484449 6_3:-9141149 None:intergenic
CGAATGAGAATGCGAATGCT+AGG 0.484868 6_3:+9141680 Msa0937670:CDS
ATCGTTGGCCCAGGATCGGA+GGG 0.485216 6_3:-9141134 None:intergenic
TGGAAGATTGAAATTCGTCT+TGG 0.489018 6_3:-9145036 None:intergenic
GAAAGGTGTGGAAAGAGAAA+AGG 0.489304 6_3:+9141798 Msa0937670:CDS
TGTTAGTGAGAAGAAGGTAG+AGG 0.489533 6_3:+9141852 Msa0937670:CDS
GGGATGGTTAAGGGTTATAG+TGG 0.489732 6_3:+9143236 Msa0937670:CDS
TCGTCATAACGAGGAACAAT+TGG 0.490781 6_3:+9141297 Msa0937670:CDS
TCGTTAGGAAATGGAGATGG+TGG 0.492975 6_3:-9140967 None:intergenic
TCGTCTTTGATGTGCTCCCA+TGG 0.493556 6_3:-9144597 None:intergenic
ATCAATAAACCAGTAGCCAT+TGG 0.493847 6_3:-9143021 None:intergenic
GAGTGGAGAATGGATGGAAG+AGG 0.494404 6_3:-9140993 None:intergenic
GGATGGAAGAGGTTGTCGTT+AGG 0.494486 6_3:-9140982 None:intergenic
AAGAAAGATGAGGTTGGTGG+TGG 0.496087 6_3:+9141742 Msa0937670:CDS
GAAAAGGAAAAGGGGAAGAG+GGG 0.496709 6_3:+9141814 Msa0937670:CDS
TTGCCAAATCTCCCCACAAA+AGG 0.497675 6_3:-9144643 None:intergenic
TGTGGAAAGAGAAAAGGAAA+AGG 0.500002 6_3:+9141804 Msa0937670:CDS
AAAAGTTGTATGAGAAAGCA+AGG 0.502196 6_3:+9144989 Msa0937670:CDS
TAGAGCGTAGCTTGGATGAC+AGG 0.504180 6_3:+9145067 Msa0937670:CDS
TCGTTGGCCCAGGATCGGAG+GGG 0.505287 6_3:-9141133 None:intergenic
TATTTACAGGTTGGGCATGC+CGG 0.506776 6_3:+9142988 Msa0937670:intron
CATGTTTGGGATAGTTCGCA+TGG 0.508231 6_3:+9141955 Msa0937670:CDS
GGTCATTCAGCGTGAGCCAT+GGG 0.508339 6_3:+9144581 Msa0937670:intron
AATCTCTTCGGAGAGCCGTT+AGG 0.515298 6_3:-9145753 None:intergenic
TGCATGGGACTTTCAAGAGC+TGG 0.515938 6_3:+9145887 Msa0937670:CDS
TGTATGAGAAAGCAAGGAGA+GGG 0.517131 6_3:+9144995 Msa0937670:CDS
TGTGGAGAGGAAACGGAGAG+TGG 0.518712 6_3:-9141010 None:intergenic
CTCTTCGGAGAGCCGTTAGG+TGG 0.519359 6_3:-9145750 None:intergenic
ATTTGACATAGAGCGTAGCT+TGG 0.526109 6_3:+9145059 Msa0937670:CDS
TCGGTTTAATTCCGGTTCAG+TGG 0.528374 6_3:-9141164 None:intergenic
TTATAAAATGGTGTATCAGT+TGG 0.530647 6_3:+9141423 Msa0937670:CDS
TAATGCTTATCTTTCTCCCA+AGG 0.531868 6_3:-9141403 None:intergenic
GGAAAGAGCAAACTAACAAG+TGG 0.534816 6_3:-9146227 None:intergenic
TGGGTTTGGGGAGATTGGGA+CGG 0.536973 6_3:-9141068 None:intergenic
TTCGTATTGAAGAGGGTATG+GGG 0.538366 6_3:-9141034 None:intergenic
AATATTCAGCAGATGATGCA+TGG 0.539686 6_3:+9145871 Msa0937670:CDS
AGGGGAGGCTACTTCAACAT+GGG 0.540342 6_3:+9143271 Msa0937670:CDS
AGTCAACAAAACTGGTGGAC+AGG 0.543352 6_3:+9143058 Msa0937670:CDS
GTTCGTATTGAAGAGGGTAT+GGG 0.543371 6_3:-9141035 None:intergenic
ATTTATCGTTGGCCCAGGAT+CGG 0.544632 6_3:-9141138 None:intergenic
GGTTAATTTATCGTTGGCCC+AGG 0.546253 6_3:-9141143 None:intergenic
TGCCGGAACTCTTGATCCAA+TGG 0.547199 6_3:+9143005 Msa0937670:CDS
TCATTTATGATCTTACTAAG+TGG 0.547227 6_3:+9146087 Msa0937670:three_prime_UTR
GGTTTATTGATTGTTTGCGT+TGG 0.547808 6_3:+9143033 Msa0937670:CDS
GGATGGTTAAGGGTTATAGT+GGG 0.548141 6_3:+9143237 Msa0937670:CDS
GCTCTCCGAAGAGATTCAAT+TGG 0.548644 6_3:+9145760 Msa0937670:CDS
TCGGGTTTAGCGTTTCGAGT+GGG 0.549025 6_3:-9141087 None:intergenic
TATGATCTTACTAAGTGGGT+CGG 0.549768 6_3:+9146092 Msa0937670:three_prime_UTR
TCATAACGAGGAACAATTGG+TGG 0.550917 6_3:+9141300 Msa0937670:CDS
GAGGGTATGGGGTTGTGGAG+AGG 0.558727 6_3:-9141023 None:intergenic
CGTTAGGAAATGGAGATGGT+GGG 0.559621 6_3:-9140966 None:intergenic
TAGCGTTTCGAGTGGGTTTG+GGG 0.559820 6_3:-9141080 None:intergenic
TGAGGAGAATGAGAAAGGTG+TGG 0.562921 6_3:+9141786 Msa0937670:CDS
TGATGAGTTCGTATTGAAGA+GGG 0.563092 6_3:-9141041 None:intergenic
GACTTTGCATAAGAGGGAAG+AGG 0.565594 6_3:+9141351 Msa0937670:CDS
TTGTAGTTGCGCCCACCTAA+CGG 0.568022 6_3:+9145738 Msa0937670:intron
ACTTTAATAGCAGAGAACAT+AGG 0.569137 6_3:-9144672 None:intergenic
GTTGAGGACTTTGCATAAGA+GGG 0.574704 6_3:+9141345 Msa0937670:CDS
GGACTTTCAAGAGCTGGAAG+AGG 0.574710 6_3:+9145893 Msa0937670:CDS
TACCGGAAGTTGTTGAGTTG+AGG 0.577339 6_3:+9141329 Msa0937670:CDS
GGGTTTGAATGTGAAGAAGG+AGG 0.578103 6_3:+9141885 Msa0937670:CDS
AGGTCATTCAGCGTGAGCCA+TGG 0.580500 6_3:+9144580 Msa0937670:intron
ATGATGAGTTCGTATTGAAG+AGG 0.580778 6_3:-9141042 None:intergenic
ACAATTGGTGGAGATGATAC+CGG 0.583536 6_3:+9141312 Msa0937670:CDS
TGGAAAGAGAAAAGGAAAAG+GGG 0.584024 6_3:+9141806 Msa0937670:CDS
GAAAATACTATATTAAGAGG+AGG 0.584970 6_3:+9141239 Msa0937670:CDS
AGAGGAGGAAGAGAATGTAT+GGG 0.585108 6_3:+9141254 Msa0937670:CDS
AGGGTTAGGAACATGAAAGT+TGG 0.586439 6_3:+9141559 Msa0937670:CDS
GTATGAGAAAGCAAGGAGAG+GGG 0.588760 6_3:+9144996 Msa0937670:CDS
AGGGTTAAGAGCAAGAAAGT+TGG 0.594240 6_3:+9141700 Msa0937670:CDS
TAGGGGAGGCTACTTCAACA+TGG 0.596980 6_3:+9143270 Msa0937670:CDS
GAAAGAGCAAACTAACAAGT+GGG 0.600975 6_3:-9146226 None:intergenic
TTCGGGTTTAGCGTTTCGAG+TGG 0.606767 6_3:-9141088 None:intergenic
ATATTCAGCAGATGATGCAT+GGG 0.609401 6_3:+9145872 Msa0937670:CDS
ATGCTTCAGATATCAAGGGA+TGG 0.611716 6_3:+9143220 Msa0937670:intron
TCTTCGGAGAGCCGTTAGGT+GGG 0.612060 6_3:-9145749 None:intergenic
TATGAACAATTAGATTGACC+AGG 0.612218 6_3:-9141493 None:intergenic
GAATGAGAATGCGAATGCTA+GGG 0.615270 6_3:+9141681 Msa0937670:CDS
ATGTTTGGGATAGTTCGCAT+GGG 0.626322 6_3:+9141956 Msa0937670:CDS
GATGGTTAAGGGTTATAGTG+GGG 0.629063 6_3:+9143238 Msa0937670:CDS
TGGCAAGTCAACAAAACTGG+TGG 0.632066 6_3:+9143053 Msa0937670:CDS
TTGTATGAGAAAGCAAGGAG+AGG 0.634679 6_3:+9144994 Msa0937670:CDS
TTGAAGTAGCCTCCCCTAAG+CGG 0.636178 6_3:-9143265 None:intergenic
TTGTCGTTAGGAAATGGAGA+TGG 0.646384 6_3:-9140970 None:intergenic
TAATTCGAATGCGAATACTA+GGG 0.653259 6_3:+9141540 Msa0937670:CDS
TTAATAGCAGAGAACATAGG+TGG 0.666040 6_3:-9144669 None:intergenic
GTTATGACGATGATCATCAT+CGG 0.670328 6_3:-9141284 None:intergenic
GAACCGGAATTAAACCGACC+CGG 0.676094 6_3:+9141169 Msa0937670:CDS
TGCGAACTATCCCAAACATG+AGG 0.676995 6_3:-9141952 None:intergenic
AATCTCCCCACAAAAGGACA+AGG 0.707724 6_3:-9144637 None:intergenic
AAAGAGCAAACTAACAAGTG+GGG 0.714316 6_3:-9146225 None:intergenic
ATGGGAGCACATCAAAGACG+AGG 0.727299 6_3:+9144599 Msa0937670:CDS
TGATGATCATCGTCATAACG+AGG 0.729611 6_3:+9141288 Msa0937670:CDS
ATATATTCGATCACTCTGTG+CGG 0.736006 6_3:+9145591 Msa0937670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr6_3:9143494-9143513 None:intergenic 0.0%
!!! TATTTAATATATGCAAATTT+TGG + chr6_3:9142510-9142529 Msa0937670:intron 10.0%
!!! TTAAAGTATTAATTATTTAC+AGG + chr6_3:9142975-9142994 Msa0937670:intron 10.0%
!!! TTTAATTAAAATTTTTGATC+TGG + chr6_3:9143159-9143178 Msa0937670:intron 10.0%
!! ATAATTTATTAATCCATTAA+AGG + chr6_3:9143698-9143717 Msa0937670:intron 10.0%
!!! GAATTTTTACAAAAAAATAT+TGG + chr6_3:9144030-9144049 Msa0937670:intron 10.0%
!!! TTTCAAACATAATTTTTATA+AGG - chr6_3:9145463-9145482 None:intergenic 10.0%
!! ATAAATTATCTTTGACAAAA+TGG - chr6_3:9143687-9143706 None:intergenic 15.0%
!! TATCATATTAATAAACACAT+AGG - chr6_3:9144285-9144304 None:intergenic 15.0%
!! TATTAATATGATTTGATGTT+TGG + chr6_3:9144319-9144338 Msa0937670:intron 15.0%
!!! TTGATTTTAACTTCTATTAA+TGG - chr6_3:9145154-9145173 None:intergenic 15.0%
!! ATATAAAATAATAATGATGG+TGG + chr6_3:9145194-9145213 Msa0937670:intron 15.0%
!! TATAAAATAATAATGATGGT+GGG + chr6_3:9145195-9145214 Msa0937670:intron 15.0%
!! AAAGTATAACAAATAAATCA+GGG - chr6_3:9145526-9145545 None:intergenic 15.0%
!!! AAAAGTATAACAAATAAATC+AGG - chr6_3:9145527-9145546 None:intergenic 15.0%
!! AAAATTAAAAATTCCACAAA+GGG - chr6_3:9146014-9146033 None:intergenic 15.0%
!! TAAAATTAAAAATTCCACAA+AGG - chr6_3:9146015-9146034 None:intergenic 15.0%
!!! CTTAATATAGTATTTTCTCT+TGG - chr6_3:9141236-9141255 None:intergenic 20.0%
!! AGAGAAAATACTATATTAAG+AGG + chr6_3:9141236-9141255 Msa0937670:CDS 20.0%
!! GAAAGATAAGCATTATAAAA+TGG + chr6_3:9141411-9141430 Msa0937670:CDS 20.0%
!!! AATCTTTGTTTTTTTTTGTG+TGG + chr6_3:9142709-9142728 Msa0937670:intron 20.0%
!! CAACATTATGTTCTTAAATA+TGG + chr6_3:9142769-9142788 Msa0937670:intron 20.0%
!!! ATACTTAATAGTGTTTCTTT+TGG + chr6_3:9142801-9142820 Msa0937670:intron 20.0%
!!! TACTTAATAGTGTTTCTTTT+GGG + chr6_3:9142802-9142821 Msa0937670:intron 20.0%
!!! ACACTTAATTTTTACTTTCA+TGG - chr6_3:9142836-9142855 None:intergenic 20.0%
!! AAAAATTAAGTGTGAATTTG+TGG + chr6_3:9142843-9142862 Msa0937670:intron 20.0%
!! AGTATTAATTATTTACAGGT+TGG + chr6_3:9142979-9142998 Msa0937670:intron 20.0%
!! GTATTAATTATTTACAGGTT+GGG + chr6_3:9142980-9142999 Msa0937670:intron 20.0%
!! CACATTATATAATTAGCTAT+TGG + chr6_3:9143345-9143364 Msa0937670:intron 20.0%
!! TTATATAATTAGCTATTGGT+TGG + chr6_3:9143349-9143368 Msa0937670:intron 20.0%
!! CATACACAAGTATTATTTAT+TGG + chr6_3:9144397-9144416 Msa0937670:intron 20.0%
!! AAAATTAAATGGTTCAAGAA+TGG - chr6_3:9144709-9144728 None:intergenic 20.0%
!! ACGAAACTATGAAAATTAAA+TGG - chr6_3:9144720-9144739 None:intergenic 20.0%
!!! TAAATATGTCATTTCAGAAA+TGG + chr6_3:9144789-9144808 Msa0937670:intron 20.0%
!!! AAGAAAAATGTTGATTACAT+AGG - chr6_3:9144844-9144863 None:intergenic 20.0%
!! TATCTCAGAGAAATTAAAAA+TGG - chr6_3:9145358-9145377 None:intergenic 20.0%
!!! TCTAAAAATCAAATTTTGTC+TGG - chr6_3:9145551-9145570 None:intergenic 20.0%
!!! GATAAGTTAAAGATAAGTTT+TGG - chr6_3:9145925-9145944 None:intergenic 20.0%
!!! ACCAATTTTTAAGCATATTA+TGG + chr6_3:9145988-9146007 Msa0937670:three_prime_UTR 20.0%
! GAAAATACTATATTAAGAGG+AGG + chr6_3:9141239-9141258 Msa0937670:CDS 25.0%
! TTATAAAATGGTGTATCAGT+TGG + chr6_3:9141423-9141442 Msa0937670:CDS 25.0%
!!! TGATAAGTTGATGTTTTTTG+AGG + chr6_3:9141768-9141787 Msa0937670:CDS 25.0%
!!! CTTTTGATTAACAAACCTAA+AGG + chr6_3:9141985-9142004 Msa0937670:CDS 25.0%
! GCTATTTACATTTCTTATTG+TGG + chr6_3:9142018-9142037 Msa0937670:intron 25.0%
!!! TTGCATGTTGATTTACTTTT+GGG + chr6_3:9142454-9142473 Msa0937670:intron 25.0%
! TGATCAATGAAAATGAAATC+AGG - chr6_3:9142667-9142686 None:intergenic 25.0%
! TTTCATTGATCACATAATGT+AGG + chr6_3:9142675-9142694 Msa0937670:intron 25.0%
! TGAAATATATATGTGTACTG+TGG - chr6_3:9142936-9142955 None:intergenic 25.0%
! AAACAAAAACTGTACTATAG+TGG - chr6_3:9143141-9143160 None:intergenic 25.0%
!! TTTTTATGCTTCAGATATCA+AGG + chr6_3:9143215-9143234 Msa0937670:intron 25.0%
!! TTTTATGCTTCAGATATCAA+GGG + chr6_3:9143216-9143235 Msa0937670:intron 25.0%
! ATATATATATATATGGCGCT+AGG - chr6_3:9143487-9143506 None:intergenic 25.0%
!!! CTCTATTTTAAAGTCTTGAT+AGG - chr6_3:9143597-9143616 None:intergenic 25.0%
!!! ATCAAGACTTTAAAATAGAG+AGG + chr6_3:9143597-9143616 Msa0937670:intron 25.0%
!! TTTGAAATTTGAATTGGGTT+TGG + chr6_3:9144121-9144140 Msa0937670:intron 25.0%
! TTGAAATTTGAATTGGGTTT+GGG + chr6_3:9144122-9144141 Msa0937670:intron 25.0%
! CGGTTTCAATATATTGAAAT+TGG + chr6_3:9144350-9144369 Msa0937670:intron 25.0%
! TTTCGTTAAAGTTATGAAGT+TGG + chr6_3:9144734-9144753 Msa0937670:intron 25.0%
!! TATAAAGACTTGGTTTCTTA+TGG + chr6_3:9144920-9144939 Msa0937670:intron 25.0%
!!! AATCATCACTGCTTTTTTAT+AGG + chr6_3:9144957-9144976 Msa0937670:intron 25.0%
! CAACTTAAATCATGATTCAA+AGG - chr6_3:9145130-9145149 None:intergenic 25.0%
! CATTTCTCAAAATAAATGGA+GGG - chr6_3:9145222-9145241 None:intergenic 25.0%
! TCTCCATTTCTCAAAATAAA+TGG - chr6_3:9145226-9145245 None:intergenic 25.0%
! TTGATTCATTCATCAACAAT+TGG + chr6_3:9145273-9145292 Msa0937670:intron 25.0%
! TCAGAGAAATTAAAAATGGA+GGG - chr6_3:9145354-9145373 None:intergenic 25.0%
!!! TTTTAATTTCTCTGAGATAC+TGG + chr6_3:9145359-9145378 Msa0937670:intron 25.0%
!!! TGTAGTTGATTTGTTCATTT+TGG + chr6_3:9145500-9145519 Msa0937670:intron 25.0%
!! CTTATCTTTAACTTATCTTC+AGG + chr6_3:9145928-9145947 Msa0937670:exon 25.0%
! GCCATAATATGCTTAAAAAT+TGG - chr6_3:9145992-9146011 None:intergenic 25.0%
! TCATTTATGATCTTACTAAG+TGG + chr6_3:9146087-9146106 Msa0937670:three_prime_UTR 25.0%
! CATTTATGATCTTACTAAGT+GGG + chr6_3:9146088-9146107 Msa0937670:three_prime_UTR 25.0%
TTCAGTGGTTAATTTATCGT+TGG - chr6_3:9141152-9141171 None:intergenic 30.0%
!! AAGTTCAAATTTTGACGAAC+CGG - chr6_3:9141191-9141210 None:intergenic 30.0%
!! ATGATGCTTTTTGTTATCCT+TGG + chr6_3:9141386-9141405 Msa0937670:CDS 30.0%
!! TGATGCTTTTTGTTATCCTT+GGG + chr6_3:9141387-9141406 Msa0937670:CDS 30.0%
! GTATTTTCCTAATCAGTGTT+TGG + chr6_3:9141453-9141472 Msa0937670:CDS 30.0%
TATGAACAATTAGATTGACC+AGG - chr6_3:9141496-9141515 None:intergenic 30.0%
TAATTCGAATGCGAATACTA+GGG + chr6_3:9141540-9141559 Msa0937670:CDS 30.0%
!!! ACATGAAAGTTGGTGTTTTT+AGG + chr6_3:9141569-9141588 Msa0937670:CDS 30.0%
!!! CATGAAAGTTGGTGTTTTTA+GGG + chr6_3:9141570-9141589 Msa0937670:CDS 30.0%
!!! TTGGTGTTTTTTGATGAGAA+TGG + chr6_3:9141622-9141641 Msa0937670:CDS 30.0%
!!! TGGTGTTTTTTGATGAGAAT+GGG + chr6_3:9141623-9141642 Msa0937670:CDS 30.0%
!!! TTTTTTGAGGAGAATGAGAA+AGG + chr6_3:9141781-9141800 Msa0937670:CDS 30.0%
TAAAGATGTTAGTGAGAAGA+AGG + chr6_3:9141846-9141865 Msa0937670:CDS 30.0%
!!! AAGGTAGAGGAGTTTTTTAA+GGG + chr6_3:9141865-9141884 Msa0937670:CDS 30.0%
AAGAAATGTAAATAGCGAAG+TGG - chr6_3:9142014-9142033 None:intergenic 30.0%
! AAACCTATTTTGCATTGTAG+CGG + chr6_3:9142225-9142244 Msa0937670:intron 30.0%
!!! CTTGCATGTTGATTTACTTT+TGG + chr6_3:9142453-9142472 Msa0937670:intron 30.0%
!! TAACCTTTTTCACTTTGACA+AGG - chr6_3:9142909-9142928 None:intergenic 30.0%
AGAAAAACAGATTAACTCAC+TGG - chr6_3:9143308-9143327 None:intergenic 30.0%
! TACATTTGAAGCAATGCAAT+AGG - chr6_3:9143379-9143398 None:intergenic 30.0%
TTGCATTGCTTCAAATGTAA+AGG + chr6_3:9143380-9143399 Msa0937670:intron 30.0%
! TAGAACTATTCTGAGAACTA+TGG - chr6_3:9143524-9143543 None:intergenic 30.0%
!! ATAGGAGAAAGTGTTATTTC+AGG - chr6_3:9143579-9143598 None:intergenic 30.0%
! ATTTGATTTCTCACTGATTG+CGG + chr6_3:9143626-9143645 Msa0937670:intron 30.0%
GTCTAACTATGATCTATCTA+CGG - chr6_3:9143665-9143684 None:intergenic 30.0%
!! TTGTCTTATTTGTTCGTACT+TGG + chr6_3:9143987-9144006 Msa0937670:intron 30.0%
! TCTTGCAGATTTCTTTTGTT+TGG + chr6_3:9144095-9144114 Msa0937670:intron 30.0%
!! CTTGCAGATTTCTTTTGTTT+GGG + chr6_3:9144096-9144115 Msa0937670:intron 30.0%
! TGGGTGTTTGAAATTTGAAT+TGG + chr6_3:9144115-9144134 Msa0937670:intron 30.0%
! GGGTGTTTGAAATTTGAATT+GGG + chr6_3:9144116-9144135 Msa0937670:intron 30.0%
GATCTGTTGAATTTGTAAGA+TGG + chr6_3:9144206-9144225 Msa0937670:intron 30.0%
TGAGTCACATTACAATGATT+TGG - chr6_3:9144460-9144479 None:intergenic 30.0%
!!! CATGCAATTTTTTCACTCAT+AGG + chr6_3:9144543-9144562 Msa0937670:intron 30.0%
ACTTTAATAGCAGAGAACAT+AGG - chr6_3:9144675-9144694 None:intergenic 30.0%
AAAAAGCAGTGATGATTGTA+AGG - chr6_3:9144954-9144973 None:intergenic 30.0%
!!! ATCACTGCTTTTTTATAGGT+TGG + chr6_3:9144961-9144980 Msa0937670:intron 30.0%
AAAAGTTGTATGAGAAAGCA+AGG + chr6_3:9144989-9145008 Msa0937670:CDS 30.0%
TCATGATTCAAAGGCAAAAA+GGG - chr6_3:9145121-9145140 None:intergenic 30.0%
ATCATGATTCAAAGGCAAAA+AGG - chr6_3:9145122-9145141 None:intergenic 30.0%
CCATTTCTCAAAATAAATGG+AGG - chr6_3:9145223-9145242 None:intergenic 30.0%
!!! CCTCCATTTATTTTGAGAAA+TGG + chr6_3:9145220-9145239 Msa0937670:intron 30.0%
CTCAGAGAAATTAAAAATGG+AGG - chr6_3:9145355-9145374 None:intergenic 30.0%
!! TTTAGAGTGACTTGTTCTAA+AGG + chr6_3:9145565-9145584 Msa0937670:CDS 30.0%
!! TTAGAGTGACTTGTTCTAAA+GGG + chr6_3:9145566-9145585 Msa0937670:CDS 30.0%
ACTTACCAATTGAATCTCTT+CGG - chr6_3:9145768-9145787 None:intergenic 30.0%
GAATCTAATTGAAGGTCAAT+GGG - chr6_3:9145798-9145817 None:intergenic 30.0%
TGAATCTAATTGAAGGTCAA+TGG - chr6_3:9145799-9145818 None:intergenic 30.0%
TCACTCTTGAATCTAATTGA+AGG - chr6_3:9145806-9145825 None:intergenic 30.0%
! GACTTGCAGTTTTCTTTTTT+TGG + chr6_3:9145950-9145969 Msa0937670:three_prime_UTR 30.0%
TTAAGAGTTCATTTCTGACT+TGG + chr6_3:9146032-9146051 Msa0937670:three_prime_UTR 30.0%
TGATGAGTTCGTATTGAAGA+GGG - chr6_3:9141044-9141063 None:intergenic 35.0%
ATGATGAGTTCGTATTGAAG+AGG - chr6_3:9141045-9141064 None:intergenic 35.0%
CGATAAATTAACCACTGAAC+CGG + chr6_3:9141153-9141172 Msa0937670:CDS 35.0%
!! AGTTCAAATTTTGACGAACC+GGG - chr6_3:9141190-9141209 None:intergenic 35.0%
GTTATGACGATGATCATCAT+CGG - chr6_3:9141287-9141306 None:intergenic 35.0%
TAATGCTTATCTTTCTCCCA+AGG - chr6_3:9141406-9141425 None:intergenic 35.0%
CTAATTCGAATGCGAATACT+AGG + chr6_3:9141539-9141558 Msa0937670:CDS 35.0%
!!! TGGTGTTTTTAGGGAGAATA+AGG + chr6_3:9141579-9141598 Msa0937670:CDS 35.0%
!!! TGTTTTTAGGGAGAATAAGG+AGG + chr6_3:9141582-9141601 Msa0937670:CDS 35.0%
!! GGTTGTTGATGATGATAAGT+TGG + chr6_3:9141603-9141622 Msa0937670:CDS 35.0%
!!! AGCAAGAAAGTTGGTGTTTT+TGG + chr6_3:9141709-9141728 Msa0937670:CDS 35.0%
!!! AAAGTTGGTGTTTTTGGTGT+TGG + chr6_3:9141715-9141734 Msa0937670:CDS 35.0%
!!! AAGTTGGTGTTTTTGGTGTT+GGG + chr6_3:9141716-9141735 Msa0937670:CDS 35.0%
TGTGGAAAGAGAAAAGGAAA+AGG + chr6_3:9141804-9141823 Msa0937670:CDS 35.0%
GTGGAAAGAGAAAAGGAAAA+GGG + chr6_3:9141805-9141824 Msa0937670:CDS 35.0%
TGGAAAGAGAAAAGGAAAAG+GGG + chr6_3:9141806-9141825 Msa0937670:CDS 35.0%
!!! GAAGGTAGAGGAGTTTTTTA+AGG + chr6_3:9141864-9141883 Msa0937670:CDS 35.0%
TAAGGGTTTGAATGTGAAGA+AGG + chr6_3:9141882-9141901 Msa0937670:CDS 35.0%
TAGCTACTATTTGACAACAC+TGG - chr6_3:9142068-9142087 None:intergenic 35.0%
TTGTTTAATAGCTGCTATCG+TGG + chr6_3:9142167-9142186 Msa0937670:intron 35.0%
ATTCCGCTACAATGCAAAAT+AGG - chr6_3:9142231-9142250 None:intergenic 35.0%
TTTGCACTCATTTGCAAAGT+TGG + chr6_3:9142350-9142369 Msa0937670:intron 35.0%
TTACTTAGTGGTTAACCTGA+TGG + chr6_3:9142403-9142422 Msa0937670:intron 35.0%
GATGTCATTCTCATTGAAAG+TGG - chr6_3:9142581-9142600 None:intergenic 35.0%
ATTAAGTGTGAATTTGTGGC+AGG + chr6_3:9142847-9142866 Msa0937670:intron 35.0%
ATCAATAAACCAGTAGCCAT+TGG - chr6_3:9143024-9143043 None:intergenic 35.0%
! GGTTTATTGATTGTTTGCGT+TGG + chr6_3:9143033-9143052 Msa0937670:CDS 35.0%
CCAGTACTTAGTACTCAAAT+GGG - chr6_3:9143110-9143129 None:intergenic 35.0%
TCCAGTACTTAGTACTCAAA+TGG - chr6_3:9143111-9143130 None:intergenic 35.0%
! AAACTGTACTATAGTGGAAC+AGG - chr6_3:9143135-9143154 None:intergenic 35.0%
AGATATCAAGGGATGGTTAA+GGG + chr6_3:9143227-9143246 Msa0937670:intron 35.0%
! TTTGATTTCTCACTGATTGC+GGG + chr6_3:9143627-9143646 Msa0937670:intron 35.0%
ATTTGTTCGTACTTGGCTAT+TGG + chr6_3:9143994-9144013 Msa0937670:intron 35.0%
! TTTTCCTGCTTCATTAGTTG+TGG + chr6_3:9144156-9144175 Msa0937670:intron 35.0%
TTTCCTGCTTCATTAGTTGT+GGG + chr6_3:9144157-9144176 Msa0937670:intron 35.0%
!!! ATTCAGCCGGTTTTAGTTAT+TGG - chr6_3:9144184-9144203 None:intergenic 35.0%
TTCAACAGATCAAATTCAGC+CGG - chr6_3:9144197-9144216 None:intergenic 35.0%
GTTGAATTTGTAAGATGGTG+AGG + chr6_3:9144211-9144230 Msa0937670:intron 35.0%
ATGATTTGATGTTTGGACCT+TGG + chr6_3:9144326-9144345 Msa0937670:intron 35.0%
TGATTTGATGTTTGGACCTT+GGG + chr6_3:9144327-9144346 Msa0937670:intron 35.0%
!! GAAAAGTATCAATTCAAGCC+TGG + chr6_3:9144424-9144443 Msa0937670:intron 35.0%
! TGATTTGGATGCATTTATCC+AGG - chr6_3:9144445-9144464 None:intergenic 35.0%
TGTGACTCATAAGCAGAATT+AGG + chr6_3:9144471-9144490 Msa0937670:intron 35.0%
GAATGACCTACATATTAAGC+TGG - chr6_3:9144569-9144588 None:intergenic 35.0%
TTAATAGCAGAGAACATAGG+TGG - chr6_3:9144672-9144691 None:intergenic 35.0%
!!! ACTGCTTTTTTATAGGTTGG+AGG + chr6_3:9144964-9144983 Msa0937670:intron 35.0%
TGGAAGATTGAAATTCGTCT+TGG - chr6_3:9145039-9145058 None:intergenic 35.0%
CATGATTCAAAGGCAAAAAG+GGG - chr6_3:9145120-9145139 None:intergenic 35.0%
CAGTTTATGTTTCACGAGTA+CGG - chr6_3:9145253-9145272 None:intergenic 35.0%
AAAATGGAGGGTCAAAGATT+AGG - chr6_3:9145342-9145361 None:intergenic 35.0%
TAACAGCTTTGCGCTTATAA+TGG + chr6_3:9145384-9145403 Msa0937670:intron 35.0%
ATATATTCGATCACTCTGTG+CGG + chr6_3:9145591-9145610 Msa0937670:CDS 35.0%
AATATTCAGCAGATGATGCA+TGG + chr6_3:9145871-9145890 Msa0937670:CDS 35.0%
ATATTCAGCAGATGATGCAT+GGG + chr6_3:9145872-9145891 Msa0937670:CDS 35.0%
TATGATCTTACTAAGTGGGT+CGG + chr6_3:9146092-9146111 Msa0937670:three_prime_UTR 35.0%
TTGTCGTTAGGAAATGGAGA+TGG - chr6_3:9140973-9140992 None:intergenic 40.0%
AAGAGGTTGTCGTTAGGAAA+TGG - chr6_3:9140979-9140998 None:intergenic 40.0%
! TTCGTATTGAAGAGGGTATG+GGG - chr6_3:9141037-9141056 None:intergenic 40.0%
! GTTCGTATTGAAGAGGGTAT+GGG - chr6_3:9141038-9141057 None:intergenic 40.0%
AGTTCGTATTGAAGAGGGTA+TGG - chr6_3:9141039-9141058 None:intergenic 40.0%
AAGAGGAGGAAGAGAATGTA+TGG + chr6_3:9141253-9141272 Msa0937670:CDS 40.0%
AGAGGAGGAAGAGAATGTAT+GGG + chr6_3:9141254-9141273 Msa0937670:CDS 40.0%
TGATGATCATCGTCATAACG+AGG + chr6_3:9141288-9141307 Msa0937670:CDS 40.0%
TCGTCATAACGAGGAACAAT+TGG + chr6_3:9141297-9141316 Msa0937670:CDS 40.0%
TCATAACGAGGAACAATTGG+TGG + chr6_3:9141300-9141319 Msa0937670:CDS 40.0%
ACAATTGGTGGAGATGATAC+CGG + chr6_3:9141312-9141331 Msa0937670:CDS 40.0%
AGTTGAGGACTTTGCATAAG+AGG + chr6_3:9141344-9141363 Msa0937670:CDS 40.0%
GTTGAGGACTTTGCATAAGA+GGG + chr6_3:9141345-9141364 Msa0937670:CDS 40.0%
TCCTAATCAGTGTTTGGATC+AGG + chr6_3:9141459-9141478 Msa0937670:CDS 40.0%
!!! GATCAGGCTTTTTTGAAACC+TGG + chr6_3:9141475-9141494 Msa0937670:CDS 40.0%
AGGGTTAGGAACATGAAAGT+TGG + chr6_3:9141559-9141578 Msa0937670:CDS 40.0%
GAATGAGAATGCGAATGCTA+GGG + chr6_3:9141681-9141700 Msa0937670:CDS 40.0%
AGGGTTAAGAGCAAGAAAGT+TGG + chr6_3:9141700-9141719 Msa0937670:CDS 40.0%
!!! AGTTGGTGTTTTTGGTGTTG+GGG + chr6_3:9141717-9141736 Msa0937670:CDS 40.0%
! GAAAGGTGTGGAAAGAGAAA+AGG + chr6_3:9141798-9141817 Msa0937670:CDS 40.0%
AGAAAAGGAAAAGGGGAAGA+GGG + chr6_3:9141813-9141832 Msa0937670:CDS 40.0%
TGTTAGTGAGAAGAAGGTAG+AGG + chr6_3:9141852-9141871 Msa0937670:CDS 40.0%
!!! TTGAGCCGTTTTTTAGTTCG+AGG + chr6_3:9141917-9141936 Msa0937670:CDS 40.0%
GTCCTCCTCGAACTAAAAAA+CGG - chr6_3:9141925-9141944 None:intergenic 40.0%
!!! GTTTTTTAGTTCGAGGAGGA+CGG + chr6_3:9141924-9141943 Msa0937670:CDS 40.0%
!!! TTTTTTAGTTCGAGGAGGAC+GGG + chr6_3:9141925-9141944 Msa0937670:CDS 40.0%
! ATGTTTGGGATAGTTCGCAT+GGG + chr6_3:9141956-9141975 Msa0937670:CDS 40.0%
ATGAGTGCAAAACACGAAGT+TGG - chr6_3:9142341-9142360 None:intergenic 40.0%
AAGCAAAACGAAGCAAAGCA+AGG - chr6_3:9142436-9142455 None:intergenic 40.0%
AGTGCTGCAGTATAAGCATA+TGG - chr6_3:9142608-9142627 None:intergenic 40.0%
TATACTGCAGCACTAAGTGA+CGG + chr6_3:9142614-9142633 Msa0937670:intron 40.0%
!! AGTGACGGTTTAGGTTGTAT+TGG + chr6_3:9142629-9142648 Msa0937670:intron 40.0%
TGGACTTCATTCACAGTTTG+TGG + chr6_3:9142871-9142890 Msa0937670:CDS 40.0%
TCGCCTTGTCAAAGTGAAAA+AGG + chr6_3:9142903-9142922 Msa0937670:CDS 40.0%
CCCATTTGAGTACTAAGTAC+TGG + chr6_3:9143107-9143126 Msa0937670:intron 40.0%
ATGCTTCAGATATCAAGGGA+TGG + chr6_3:9143220-9143239 Msa0937670:intron 40.0%
CAGATATCAAGGGATGGTTA+AGG + chr6_3:9143226-9143245 Msa0937670:intron 40.0%
GGATGGTTAAGGGTTATAGT+GGG + chr6_3:9143237-9143256 Msa0937670:CDS 40.0%
GATGGTTAAGGGTTATAGTG+GGG + chr6_3:9143238-9143257 Msa0937670:CDS 40.0%
AGACAAATGAGCTCACACTA+TGG + chr6_3:9143460-9143479 Msa0937670:intron 40.0%
ACACGAACAAAATTGGAGCA+TGG - chr6_3:9143799-9143818 None:intergenic 40.0%
! GCTCCAATTTTGTTCGTGTT+TGG + chr6_3:9143800-9143819 Msa0937670:intron 40.0%
CTGCCAAACACGAACAAAAT+TGG - chr6_3:9143806-9143825 None:intergenic 40.0%
ATCTGCAAGAACCAGTGTTT+CGG - chr6_3:9144085-9144104 None:intergenic 40.0%
GTGGGTCCAATAACTAAAAC+CGG + chr6_3:9144175-9144194 Msa0937670:intron 40.0%
! TCAAATGGGCAATTTTCGCA+TGG - chr6_3:9144257-9144276 None:intergenic 40.0%
CGAAAATTGCCCATTTGATG+AGG + chr6_3:9144259-9144278 Msa0937670:intron 40.0%
ACACATAGGCCTCATCAAAT+GGG - chr6_3:9144271-9144290 None:intergenic 40.0%
AACACATAGGCCTCATCAAA+TGG - chr6_3:9144272-9144291 None:intergenic 40.0%
CAATATATTGAAACCGCCCA+AGG - chr6_3:9144346-9144365 None:intergenic 40.0%
CATAGGCCAGCTTAATATGT+AGG + chr6_3:9144560-9144579 Msa0937670:intron 40.0%
!!! AAAAGTGCCTTGTCCTTTTG+TGG + chr6_3:9144630-9144649 Msa0937670:CDS 40.0%
!! AAAGTGCCTTGTCCTTTTGT+GGG + chr6_3:9144631-9144650 Msa0937670:CDS 40.0%
TTGTATGAGAAAGCAAGGAG+AGG + chr6_3:9144994-9145013 Msa0937670:CDS 40.0%
TGTATGAGAAAGCAAGGAGA+GGG + chr6_3:9144995-9145014 Msa0937670:CDS 40.0%
AGCTACGCTCTATGTCAAAT+TGG - chr6_3:9145059-9145078 None:intergenic 40.0%
ATTTGACATAGAGCGTAGCT+TGG + chr6_3:9145059-9145078 Msa0937670:CDS 40.0%
TTGGATGACAGGTAACTTTC+TGG + chr6_3:9145078-9145097 Msa0937670:intron 40.0%
TGGATGACAGGTAACTTTCT+GGG + chr6_3:9145079-9145098 Msa0937670:intron 40.0%
!! TATCACGCATCGCTTGTTAT+TGG + chr6_3:9145427-9145446 Msa0937670:intron 40.0%
!! ATCACGCATCGCTTGTTATT+GGG + chr6_3:9145428-9145447 Msa0937670:intron 40.0%
TCATCTGCTGAATATTGTGC+TGG - chr6_3:9145867-9145886 None:intergenic 40.0%
AAGCATATTATGGCCCTTTG+TGG + chr6_3:9145998-9146017 Msa0937670:three_prime_UTR 40.0%
CGTTAGGAAATGGAGATGGT+GGG - chr6_3:9140969-9140988 None:intergenic 45.0%
TCGTTAGGAAATGGAGATGG+TGG - chr6_3:9140970-9140989 None:intergenic 45.0%
! TTAGCGTTTCGAGTGGGTTT+GGG - chr6_3:9141084-9141103 None:intergenic 45.0%
! TTTAGCGTTTCGAGTGGGTT+TGG - chr6_3:9141085-9141104 None:intergenic 45.0%
ATTTATCGTTGGCCCAGGAT+CGG - chr6_3:9141141-9141160 None:intergenic 45.0%
GGTTAATTTATCGTTGGCCC+AGG - chr6_3:9141146-9141165 None:intergenic 45.0%
TCGGTTTAATTCCGGTTCAG+TGG - chr6_3:9141167-9141186 None:intergenic 45.0%
!! CAAATTTTGACGAACCGGGT+CGG - chr6_3:9141186-9141205 None:intergenic 45.0%
! TACCGGAAGTTGTTGAGTTG+AGG + chr6_3:9141329-9141348 Msa0937670:CDS 45.0%
GTCCTCAACTCAACAACTTC+CGG - chr6_3:9141334-9141353 None:intergenic 45.0%
GACTTTGCATAAGAGGGAAG+AGG + chr6_3:9141351-9141370 Msa0937670:CDS 45.0%
! GCCTGATCCAAACACTGATT+AGG - chr6_3:9141463-9141482 None:intergenic 45.0%
CGAATGCGAATACTAGGGTT+AGG + chr6_3:9141545-9141564 Msa0937670:CDS 45.0%
CGAATGAGAATGCGAATGCT+AGG + chr6_3:9141680-9141699 Msa0937670:CDS 45.0%
!!! GTTGGTGTTTTTGGTGTTGG+GGG + chr6_3:9141718-9141737 Msa0937670:CDS 45.0%
!!! TTGGTGTTTTTGGTGTTGGG+GGG + chr6_3:9141719-9141738 Msa0937670:CDS 45.0%
!! AAGAAAGATGAGGTTGGTGG+TGG + chr6_3:9141742-9141761 Msa0937670:CDS 45.0%
TGAGGAGAATGAGAAAGGTG+TGG + chr6_3:9141786-9141805 Msa0937670:CDS 45.0%
GAGAAAAGGAAAAGGGGAAG+AGG + chr6_3:9141812-9141831 Msa0937670:CDS 45.0%
GAAAAGGAAAAGGGGAAGAG+GGG + chr6_3:9141814-9141833 Msa0937670:CDS 45.0%
GGGTTTGAATGTGAAGAAGG+AGG + chr6_3:9141885-9141904 Msa0937670:CDS 45.0%
!!! AGCCGTTTTTTAGTTCGAGG+AGG + chr6_3:9141920-9141939 Msa0937670:CDS 45.0%
TGCGAACTATCCCAAACATG+AGG - chr6_3:9141955-9141974 None:intergenic 45.0%
! CATGTTTGGGATAGTTCGCA+TGG + chr6_3:9141955-9141974 Msa0937670:CDS 45.0%
ATAGCGAAGTGGCTACCTTT+AGG - chr6_3:9142003-9142022 None:intergenic 45.0%
TAGACTACATTGCTGCAGTC+AGG + chr6_3:9142280-9142299 Msa0937670:intron 45.0%
AGTTGGAACACAGACCATCT+AGG - chr6_3:9142324-9142343 None:intergenic 45.0%
AGTAACGCAGTCTCAGCATT+CGG - chr6_3:9142388-9142407 None:intergenic 45.0%
TTAGTGGTTAACCTGATGGC+AGG + chr6_3:9142407-9142426 Msa0937670:intron 45.0%
AGTGTGAATTTGTGGCAGGT+TGG + chr6_3:9142851-9142870 Msa0937670:intron 45.0%
! TATTTACAGGTTGGGCATGC+CGG + chr6_3:9142988-9143007 Msa0937670:intron 45.0%
AGCCATTGGATCAAGAGTTC+CGG - chr6_3:9143010-9143029 None:intergenic 45.0%
ACTCTTGATCCAATGGCTAC+TGG + chr6_3:9143012-9143031 Msa0937670:CDS 45.0%
CGTTGGCAAGTCAACAAAAC+TGG + chr6_3:9143050-9143069 Msa0937670:CDS 45.0%
TGGCAAGTCAACAAAACTGG+TGG + chr6_3:9143053-9143072 Msa0937670:CDS 45.0%
! AGTCAACAAAACTGGTGGAC+AGG + chr6_3:9143058-9143077 Msa0937670:CDS 45.0%
GGGATGGTTAAGGGTTATAG+TGG + chr6_3:9143236-9143255 Msa0937670:CDS 45.0%
!! TATAGTGGGGTTTTCCGCTT+AGG + chr6_3:9143251-9143270 Msa0937670:CDS 45.0%
!! ATAGTGGGGTTTTCCGCTTA+GGG + chr6_3:9143252-9143271 Msa0937670:CDS 45.0%
GAGGTTGAAGGGTCCTTTAA+TGG - chr6_3:9143714-9143733 None:intergenic 45.0%
CACATCGTACAGAGGTTGAA+GGG - chr6_3:9143725-9143744 None:intergenic 45.0%
TCACATCGTACAGAGGTTGA+AGG - chr6_3:9143726-9143745 None:intergenic 45.0%
AAAATTGGAGCATGGACCGT+CGG - chr6_3:9143791-9143810 None:intergenic 45.0%
CAGAGAATCAAACAGAGCAG+AGG - chr6_3:9143902-9143921 None:intergenic 45.0%
GTTGAGGGTGAAGAGAAAGA+TGG + chr6_3:9143952-9143971 Msa0937670:intron 45.0%
AGAACCAGTGTTTCGGGAAA+AGG - chr6_3:9144078-9144097 None:intergenic 45.0%
TCTGCAAGAACCAGTGTTTC+GGG - chr6_3:9144084-9144103 None:intergenic 45.0%
TTTGATGTTTGGACCTTGGG+CGG + chr6_3:9144330-9144349 Msa0937670:intron 45.0%
! AAGTGCCTTGTCCTTTTGTG+GGG + chr6_3:9144632-9144651 Msa0937670:CDS 45.0%
AATCTCCCCACAAAAGGACA+AGG - chr6_3:9144640-9144659 None:intergenic 45.0%
! TGTCCTTTTGTGGGGAGATT+TGG + chr6_3:9144640-9144659 Msa0937670:CDS 45.0%
TTGCCAAATCTCCCCACAAA+AGG - chr6_3:9144646-9144665 None:intergenic 45.0%
GTATGAGAAAGCAAGGAGAG+GGG + chr6_3:9144996-9145015 Msa0937670:CDS 45.0%
!! TCACGCATCGCTTGTTATTG+GGG + chr6_3:9145429-9145448 Msa0937670:intron 45.0%
! GATCACTCTGTGCGGATTTT+GGG + chr6_3:9145599-9145618 Msa0937670:CDS 45.0%
GCTCTCCGAAGAGATTCAAT+TGG + chr6_3:9145760-9145779 Msa0937670:CDS 45.0%
!! GACTTGGTGCGTAGAATTGT+CGG + chr6_3:9146048-9146067 Msa0937670:three_prime_UTR 45.0%
!! AATATATAAAATAATAATGA+TGG + chr6_3:9145191-9145210 Msa0937670:intron 5.0%
GGATGGAAGAGGTTGTCGTT+AGG - chr6_3:9140985-9141004 None:intergenic 50.0%
GAGTGGAGAATGGATGGAAG+AGG - chr6_3:9140996-9141015 None:intergenic 50.0%
AACGGAGAGTGGAGAATGGA+TGG - chr6_3:9141002-9141021 None:intergenic 50.0%
AGGAAACGGAGAGTGGAGAA+TGG - chr6_3:9141006-9141025 None:intergenic 50.0%
ATGGGGTTGTGGAGAGGAAA+CGG - chr6_3:9141020-9141039 None:intergenic 50.0%
! TTGAAGAGGGTATGGGGTTG+TGG - chr6_3:9141031-9141050 None:intergenic 50.0%
! TAGCGTTTCGAGTGGGTTTG+GGG - chr6_3:9141083-9141102 None:intergenic 50.0%
! TCGGGTTTAGCGTTTCGAGT+GGG - chr6_3:9141090-9141109 None:intergenic 50.0%
! TTCGGGTTTAGCGTTTCGAG+TGG - chr6_3:9141091-9141110 None:intergenic 50.0%
!!! TTTTGAGGTGGGGTTGGTTC+GGG - chr6_3:9141108-9141127 None:intergenic 50.0%
!!! GTTTTGAGGTGGGGTTGGTT+CGG - chr6_3:9141109-9141128 None:intergenic 50.0%
GAACCGGAATTAAACCGACC+CGG + chr6_3:9141169-9141188 Msa0937670:CDS 50.0%
! GAACCGGGTCGGTTTAATTC+CGG - chr6_3:9141175-9141194 None:intergenic 50.0%
TGTTGGGGGGAAGAAAGATG+AGG + chr6_3:9141732-9141751 Msa0937670:CDS 50.0%
GGGAAGAAAGATGAGGTTGG+TGG + chr6_3:9141739-9141758 Msa0937670:CDS 50.0%
GACGGGACTTCCTCATGTTT+GGG + chr6_3:9141942-9141961 Msa0937670:CDS 50.0%
TAGCTGCTATCGTGGAGCTA+TGG + chr6_3:9142175-9142194 Msa0937670:intron 50.0%
GCTATGGCACTGTAGTGTAG+CGG + chr6_3:9142191-9142210 Msa0937670:intron 50.0%
CAGACAGCTGTTGACCTAGA+TGG + chr6_3:9142307-9142326 Msa0937670:intron 50.0%
GCTGAGACTGCGTTACTTAG+TGG + chr6_3:9142391-9142410 Msa0937670:intron 50.0%
AAGCAAGGATTCCTGCCATC+AGG - chr6_3:9142421-9142440 None:intergenic 50.0%
GCAGCACTAAGTGACGGTTT+AGG + chr6_3:9142620-9142639 Msa0937670:intron 50.0%
TGCCGGAACTCTTGATCCAA+TGG + chr6_3:9143005-9143024 Msa0937670:CDS 50.0%
! TAGTGGGGTTTTCCGCTTAG+GGG + chr6_3:9143253-9143272 Msa0937670:CDS 50.0%
TTGAAGTAGCCTCCCCTAAG+CGG - chr6_3:9143268-9143287 None:intergenic 50.0%
TAGGGGAGGCTACTTCAACA+TGG + chr6_3:9143270-9143289 Msa0937670:CDS 50.0%
AGGGGAGGCTACTTCAACAT+GGG + chr6_3:9143271-9143290 Msa0937670:CDS 50.0%
ACGCAAGTCACATCGTACAG+AGG - chr6_3:9143733-9143752 None:intergenic 50.0%
AAATTGGAGCATGGACCGTC+GGG - chr6_3:9143790-9143809 None:intergenic 50.0%
TGGCAAGTTGCATTCTCGCA+GGG - chr6_3:9143830-9143849 None:intergenic 50.0%
ATGGCAAGTTGCATTCTCGC+AGG - chr6_3:9143831-9143850 None:intergenic 50.0%
GAACTACGCACTGAAGAACG+TGG - chr6_3:9143868-9143887 None:intergenic 50.0%
! TGCACCTTTTCCCGAAACAC+TGG + chr6_3:9144071-9144090 Msa0937670:intron 50.0%
GGACCCACAACTAATGAAGC+AGG - chr6_3:9144163-9144182 None:intergenic 50.0%
TCGTCTTTGATGTGCTCCCA+TGG - chr6_3:9144600-9144619 None:intergenic 50.0%
! ATGGGAGCACATCAAAGACG+AGG + chr6_3:9144599-9144618 Msa0937670:CDS 50.0%
TAGAGCGTAGCTTGGATGAC+AGG + chr6_3:9145067-9145086 Msa0937670:CDS 50.0%
! AGGCAAAAAGGGGCACAGAA+CGG - chr6_3:9145110-9145129 None:intergenic 50.0%
! CGATCACTCTGTGCGGATTT+TGG + chr6_3:9145598-9145617 Msa0937670:CDS 50.0%
!! ACTCTGTGCGGATTTTGGGA+AGG + chr6_3:9145603-9145622 Msa0937670:CDS 50.0%
!! ATTTTGGGAAGGCTCTTGGC+AGG + chr6_3:9145614-9145633 Msa0937670:CDS 50.0%
TTGTAGTTGCGCCCACCTAA+CGG + chr6_3:9145738-9145757 Msa0937670:intron 50.0%
AATCTCTTCGGAGAGCCGTT+AGG - chr6_3:9145756-9145775 None:intergenic 50.0%
TGCATGGGACTTTCAAGAGC+TGG + chr6_3:9145887-9145906 Msa0937670:CDS 50.0%
GGACTTTCAAGAGCTGGAAG+AGG + chr6_3:9145893-9145912 Msa0937670:CDS 50.0%
TGTGGAGAGGAAACGGAGAG+TGG - chr6_3:9141013-9141032 None:intergenic 55.0%
TGGGTTTGGGGAGATTGGGA+CGG - chr6_3:9141071-9141090 None:intergenic 55.0%
! CGAGTGGGTTTGGGGAGATT+GGG - chr6_3:9141075-9141094 None:intergenic 55.0%
! TCGAGTGGGTTTGGGGAGAT+TGG - chr6_3:9141076-9141095 None:intergenic 55.0%
GGGGGGAAGAAAGATGAGGT+TGG + chr6_3:9141736-9141755 Msa0937670:CDS 55.0%
GGACGGGACTTCCTCATGTT+TGG + chr6_3:9141941-9141960 Msa0937670:CDS 55.0%
GACGAAGTCGCAGCATACAG+AGG - chr6_3:9143760-9143779 None:intergenic 55.0%
ACTTCGTCTGTCATCCCCGA+CGG + chr6_3:9143772-9143791 Msa0937670:intron 55.0%
AATTGGAGCATGGACCGTCG+GGG - chr6_3:9143789-9143808 None:intergenic 55.0%
TCACCCTCAACCACACACAG+TGG - chr6_3:9143943-9143962 None:intergenic 55.0%
AGGTCATTCAGCGTGAGCCA+TGG + chr6_3:9144580-9144599 Msa0937670:intron 55.0%
GGTCATTCAGCGTGAGCCAT+GGG + chr6_3:9144581-9144600 Msa0937670:intron 55.0%
! CAAAAAGGGGCACAGAACGG+AGG - chr6_3:9145107-9145126 None:intergenic 55.0%
!! GCGGATTTTGGGAAGGCTCT+TGG + chr6_3:9145610-9145629 Msa0937670:CDS 55.0%
TCTTCGGAGAGCCGTTAGGT+GGG - chr6_3:9145752-9145771 None:intergenic 55.0%
! GAGGGTATGGGGTTGTGGAG+AGG - chr6_3:9141026-9141045 None:intergenic 60.0%
!!! GGGGAGTTTTGAGGTGGGGT+TGG - chr6_3:9141114-9141133 None:intergenic 60.0%
!!! AGGGGGGGAGTTTTGAGGTG+GGG - chr6_3:9141118-9141137 None:intergenic 60.0%
!!! GAGGGGGGGAGTTTTGAGGT+GGG - chr6_3:9141119-9141138 None:intergenic 60.0%
! ATCGGAGGGGGGGAGTTTTG+AGG - chr6_3:9141123-9141142 None:intergenic 60.0%
ATCGTTGGCCCAGGATCGGA+GGG - chr6_3:9141137-9141156 None:intergenic 60.0%
TATCGTTGGCCCAGGATCGG+AGG - chr6_3:9141138-9141157 None:intergenic 60.0%
GGAAAAGGGGAAGAGGGGTG+TGG + chr6_3:9141819-9141838 Msa0937670:CDS 60.0%
! TGGGGTTTTCCGCTTAGGGG+AGG + chr6_3:9143256-9143275 Msa0937670:CDS 60.0%
AGAACGTGGCAGAGGCAGAG+AGG - chr6_3:9143854-9143873 None:intergenic 60.0%
CGCACTGAAGAACGTGGCAG+AGG - chr6_3:9143862-9143881 None:intergenic 60.0%
!! CACACACAGTGGCGGATCAG+AGG - chr6_3:9143932-9143951 None:intergenic 60.0%
CTCTGATCCGCCACTGTGTG+TGG + chr6_3:9143930-9143949 Msa0937670:intron 60.0%
TCCGCCACTGTGTGTGGTTG+AGG + chr6_3:9143936-9143955 Msa0937670:intron 60.0%
CCCTCAACCACACACAGTGG+CGG - chr6_3:9143940-9143959 None:intergenic 60.0%
CCGCCACTGTGTGTGGTTGA+GGG + chr6_3:9143937-9143956 Msa0937670:intron 60.0%
CTCTTCGGAGAGCCGTTAGG+TGG - chr6_3:9145753-9145772 None:intergenic 60.0%
!!! GGAGGGGGGGAGTTTTGAGG+TGG - chr6_3:9141120-9141139 None:intergenic 65.0%
AAACTCCCCCCCTCCGATCC+TGG + chr6_3:9141125-9141144 Msa0937670:CDS 65.0%
AACTCCCCCCCTCCGATCCT+GGG + chr6_3:9141126-9141145 Msa0937670:CDS 65.0%
TCGTTGGCCCAGGATCGGAG+GGG - chr6_3:9141136-9141155 None:intergenic 65.0%
CGTGGCAGAGGCAGAGAGGA+TGG - chr6_3:9143850-9143869 None:intergenic 65.0%
TTGGCCCAGGATCGGAGGGG+GGG - chr6_3:9141133-9141152 None:intergenic 70.0%
GTTGGCCCAGGATCGGAGGG+GGG - chr6_3:9141134-9141153 None:intergenic 70.0%
CGTTGGCCCAGGATCGGAGG+GGG - chr6_3:9141135-9141154 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9140911 9146244 9140911 ID=Msa0937670;Name=Msa0937670
chr6_3 mRNA 9140911 9146244 9140911 ID=Msa0937670-mRNA-1;Parent=Msa0937670;Name=Msa0937670-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|1|0.88|1|0.87|1|9|306|575
chr6_3 exon 9140911 9142006 9140911 ID=Msa0937670-mRNA-1:exon:2916;Parent=Msa0937670-mRNA-1
chr6_3 exon 9142869 9142924 9142869 ID=Msa0937670-mRNA-1:exon:2917;Parent=Msa0937670-mRNA-1
chr6_3 exon 9142997 9143079 9142997 ID=Msa0937670-mRNA-1:exon:2918;Parent=Msa0937670-mRNA-1
chr6_3 exon 9143229 9143307 9143229 ID=Msa0937670-mRNA-1:exon:2919;Parent=Msa0937670-mRNA-1
chr6_3 exon 9144582 9144692 9144582 ID=Msa0937670-mRNA-1:exon:2920;Parent=Msa0937670-mRNA-1
chr6_3 exon 9144979 9145088 9144979 ID=Msa0937670-mRNA-1:exon:2921;Parent=Msa0937670-mRNA-1
chr6_3 exon 9145552 9145635 9145552 ID=Msa0937670-mRNA-1:exon:2922;Parent=Msa0937670-mRNA-1
chr6_3 exon 9145744 9145781 9145744 ID=Msa0937670-mRNA-1:exon:2923;Parent=Msa0937670-mRNA-1
chr6_3 exon 9145868 9146244 9145868 ID=Msa0937670-mRNA-1:exon:2924;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9140911 9142006 9140911 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9142869 9142924 9142869 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9142997 9143079 9142997 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9143229 9143307 9143229 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9144582 9144692 9144582 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9144979 9145088 9144979 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9145552 9145635 9145552 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9145744 9145781 9145744 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 CDS 9145868 9145938 9145868 ID=Msa0937670-mRNA-1:cds;Parent=Msa0937670-mRNA-1
chr6_3 three_prime_UTR 9145939 9146244 9145939 ID=Msa0937670-mRNA-1:three_prime_utr;Parent=Msa0937670-mRNA-1
Gene Sequence

>Msa0937670

CTGTTGTTTGCAACAACTTCAAATCTTCTTCTTTTCTTCAAATCTGTATCTCTAACCCACCATCTCCATTTCCTAACGACAACCTCTTCCATCCATTCTCCACTCTCCGTTTCCTCTCCACAACCCCATACCCTCTTCAATACGAACTCATCATCAACCGTCCCAATCTCCCCAAACCCACTCGAAACGCTAAACCCGAACCAACCCCACCTCAAAACTCCCCCCCTCCGATCCTGGGCCAACGATAAATTAACCACTGAACCGGAATTAAACCGACCCGGTTCGTCAAAATTTGAACTTGATGATCACAATCTTGATAAATCCAAGAGAAAATACTATATTAAGAGGAGGAAGAGAATGTATGGGTCTGATTCCGATGATGATCATCGTCATAACGAGGAACAATTGGTGGAGATGATACCGGAAGTTGTTGAGTTGAGGACTTTGCATAAGAGGGAAGAGGAATTGTATATGTATGATGCTTTTTGTTATCCTTGGGAGAAAGATAAGCATTATAAAATGGTGTATCAGTTGGAGAAAAAGTATTTTCCTAATCAGTGTTTGGATCAGGCTTTTTTGAAACCTGGTCAATCTAATTGTTCATATGCTAGTTATACAAAGTCAAATGCTAATTCGAATGCGAATACTAGGGTTAGGAACATGAAAGTTGGTGTTTTTAGGGAGAATAAGGAGGTTGTTGATGATGATAAGTTGGTGTTTTTTGATGAGAATGGGAAAGACGATGATCGTAGAAATGCAAGTTCAAGTTCGAATGAGAATGCGAATGCTAGGGTTAAGAGCAAGAAAGTTGGTGTTTTTGGTGTTGGGGGGAAGAAAGATGAGGTTGGTGGTGGTGATGATAAGTTGATGTTTTTTGAGGAGAATGAGAAAGGTGTGGAAAGAGAAAAGGAAAAGGGGAAGAGGGGTGTGGATAGTAAAGATGTTAGTGAGAAGAAGGTAGAGGAGTTTTTTAAGGGTTTGAATGTGAAGAAGGAGGTTGAAGTTGTTGAGCCGTTTTTTAGTTCGAGGAGGACGGGACTTCCTCATGTTTGGGATAGTTCGCATGGGACTGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGTCGCCTTGTCAAAGTGAAAAAGGTTGGGCATGCCGGAACTCTTGATCCAATGGCTACTGGTTTATTGATTGTTTGCGTTGGCAAGTCAACAAAACTGGTGGACAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCACCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGTTGTATGAGAAAGCAAGGAGAGGGGAAAGCATTGAACTCTCGCCAAGACGAATTTCAATCTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGGACATATATTCGATCACTCTGTGCGGATTTTGGGAAGGCTCTTGGCAGTTGCGCCCACCTAACGGCTCTCCGAAGAGATTCAATTGCACAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAACTTATCTTTAA

Protein sequence

>Msa0937670

LLFATTSNLLLFFKSVSLTHHLHFLTTTSSIHSPLSVSSPQPHTLFNTNSSSTVPISPNPLETLNPNQPHLKTPPLRSWANDKLTTEPELNRPGSSKFELDDHNLDKSKRKYYIKRRKRMYGSDSDDDHRHNEEQLVEMIPEVVELRTLHKREEELYMYDAFCYPWEKDKHYKMVYQLEKKYFPNQCLDQAFLKPGQSNCSYASYTKSNANSNANTRVRNMKVGVFRENKEVVDDDKLVFFDENGKDDDRRNASSSSNENANARVKSKKVGVFGVGGKKDEVGGGDDKLMFFEENEKGVEREKEKGKRGVDSKDVSEKKVEEFFKGLNVKKEVEVVEPFFSSRRTGLPHVWDSSHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKLYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIAQYSADDAWDFQELEEAITKTYL*