AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270270 MtrunA17_Chr2g0277061 93.189 646 8 4 1 646 1 610 0.0 1216
Msa0270270 MtrunA17_Chr8g0385121 62.222 630 195 7 12 638 9 598 0.0 763
Msa0270270 MtrunA17_Chr4g0046841 50.314 636 258 10 12 631 21 614 0.0 604
Msa0270270 MtrunA17_Chr8g0385131 48.657 633 259 7 1 632 1 568 0.0 557
Msa0270270 MtrunA17_Chr8g0377631 43.740 647 293 14 14 628 9 616 1.78e-176 515
Msa0270270 MtrunA17_Chr8g0391931 45.182 633 280 12 13 628 6 588 9.05e-172 502
Msa0270270 MtrunA17_Chr8g0385181 44.708 633 267 11 1 630 1 553 3.17e-168 492
Msa0270270 MtrunA17_Chr3g0122211 41.991 643 301 13 16 628 17 617 2.27e-167 492
Msa0270270 MtrunA17_Chr4g0013011 40.881 636 302 12 8 628 6 582 3.86e-148 441
Msa0270270 MtrunA17_Chr2g0284691 41.653 629 267 12 16 629 22 565 3.28e-146 436
Msa0270270 MtrunA17_Chr8g0385161 45.033 302 110 5 331 632 1 246 8.03e-73 235
Msa0270270 MtrunA17_Chr8g0385171 44.025 318 140 9 11 327 11 291 1.06e-71 234
Msa0270270 MtrunA17_Chr7g0274871 49.007 151 63 4 12 161 126 263 4.93e-34 131
Msa0270270 MtrunA17_Chr8g0385141 54.464 112 49 2 125 234 11 122 1.61e-29 115
Msa0270270 MtrunA17_Chr8g0385151 60.417 48 19 0 281 328 1 48 4.25e-16 72.4
Msa0270270 MtrunA17_Chr7g0274911 46.575 73 31 2 540 609 13 80 4.18e-12 64.3
Msa0270270 MtrunA17_Chr7g0274901 33.913 115 45 2 372 485 1 85 3.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270270 AT4G24290.2 70.654 627 149 3 9 635 7 598 0.0 916
Msa0270270 AT4G24290.3 70.654 627 149 3 9 635 7 598 0.0 916
Msa0270270 AT1G28380.1 50.781 640 260 14 9 634 11 609 0.0 586
Msa0270270 AT4G24290.1 68.563 334 99 2 9 340 7 336 2.44e-164 474
Msa0270270 AT1G14780.1 41.911 649 303 17 14 628 10 618 8.36e-158 468
Msa0270270 AT1G29690.1 40.916 633 257 13 16 628 24 559 1.13e-146 437

Find 197 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCACATTTGATTAATT+TGG 0.118516 2_3:-1547213 None:intergenic
GATAAGTTGTAAGTTATTTA+AGG 0.192279 2_3:+1552715 Msa0270270:three_prime_UTR
CCAATTACCTCTCTATTAAA+TGG 0.214110 2_3:+1550345 Msa0270270:CDS
AATGGCAGATAAAAGGTTTC+TGG 0.239366 2_3:+1548710 Msa0270270:CDS
TGAAAGAAATGGCAGATAAA+AGG 0.248109 2_3:+1548703 Msa0270270:CDS
TGAAGAGCTCCACCAATTCT+TGG 0.267556 2_3:+1551265 Msa0270270:CDS
TGAGAGTTATTTACTTAGTA+TGG 0.275367 2_3:+1546980 Msa0270270:exon
TATTATTCTCATTATTGATT+TGG 0.277978 2_3:+1552932 Msa0270270:three_prime_UTR
CAATTGCAAGTTGAGAATTA+TGG 0.283102 2_3:+1552038 Msa0270270:CDS
TGGGATGGGTCTCCCGGGCT+AGG 0.283433 2_3:+1552134 Msa0270270:CDS
GACGATCCGCAAACAGTAAT+TGG 0.290437 2_3:+1546699 Msa0270270:five_prime_UTR
ATCTTTACAGTTTAGCTTCA+TGG 0.292509 2_3:+1551367 Msa0270270:CDS
TTTGCTCACATCGTAAATAA+AGG 0.296564 2_3:-1550404 None:intergenic
ACGATATATCTTCTGATATA+AGG 0.297869 2_3:+1547069 Msa0270270:CDS
CCATTTAATAGAGAGGTAAT+TGG 0.300333 2_3:-1550345 None:intergenic
TATAAATTCAGCGGTCTATC+CGG 0.305913 2_3:+1552244 Msa0270270:CDS
GTATTCGTCATCAAGATAAT+TGG 0.311458 2_3:+1552579 Msa0270270:three_prime_UTR
CCCGAGTGGGATGGGTCTCC+CGG 0.314842 2_3:+1552128 Msa0270270:CDS
GATCAGAAGCTGAGCTATAT+TGG 0.322944 2_3:-1548743 None:intergenic
TGTCACTGGAGCAAGACTTT+TGG 0.330179 2_3:+1552364 Msa0270270:CDS
TTGATTAATTTGGAAACATT+TGG 0.342511 2_3:-1547203 None:intergenic
TCTCTATTAAATGGAGTTCC+AGG 0.346369 2_3:+1550354 Msa0270270:CDS
CGCAGGAGACTCCTGGCTAT+TGG 0.347040 2_3:+1552339 Msa0270270:CDS
TTTCCTCACAGTTTGGAATC+AGG 0.347420 2_3:+1550046 Msa0270270:intron
AAAGGCCACCCTACCTGATT+AGG 0.347743 2_3:-1552612 None:intergenic
CCGGTAAATCTTTATTCATC+TGG 0.349002 2_3:+1551416 Msa0270270:CDS
GTGCCCACTGCCTGGGAAGC+TGG 0.351878 2_3:-1551292 None:intergenic
TTTGTTGACTATGATATTAC+CGG 0.352662 2_3:+1552424 Msa0270270:CDS
CCAGATGAATAAAGATTTAC+CGG 0.365909 2_3:-1551416 None:intergenic
AAATTAATCAAATGTGATAA+AGG 0.365999 2_3:+1547215 Msa0270270:CDS
CTTAAATTCTCAACTGTGTT+GGG 0.368805 2_3:+1552086 Msa0270270:CDS
TTATGTGAATAAGAACTTGA+TGG 0.371590 2_3:-1550099 None:intergenic
CCCGGGCTAGGGGCCAAGTC+TGG 0.385188 2_3:+1552146 Msa0270270:CDS
AAGGTGAACGCACCAGGTTC+AGG 0.386131 2_3:+1547234 Msa0270270:CDS
GGATGGGTCTCCCGGGCTAG+GGG 0.386935 2_3:+1552136 Msa0270270:CDS
AGGGAGAGGTTGGGAAAGAA+AGG 0.387741 2_3:+1552553 Msa0270270:three_prime_UTR
TCCAGACTTGGCCCCTAGCC+CGG 0.390185 2_3:-1552147 None:intergenic
GGGATGGGTCTCCCGGGCTA+GGG 0.391858 2_3:+1552135 Msa0270270:CDS
TCTTTACAGTTTAGCTTCAT+GGG 0.397162 2_3:+1551368 Msa0270270:CDS
TAAATCATGCTCGTGTCCTT+TGG 0.399546 2_3:+1551487 Msa0270270:CDS
ATCAAGTTCTTATTCACATA+AGG 0.404312 2_3:+1550101 Msa0270270:CDS
GAATTTATATTAACATCTGC+TGG 0.404538 2_3:-1552230 None:intergenic
GCAGGAGACTCCTGGCTATT+GGG 0.407109 2_3:+1552340 Msa0270270:CDS
CCCAGGTTTATCGATACCTT+TGG 0.408636 2_3:+1548579 Msa0270270:intron
TGGAAATTGTAGACGAACTT+TGG 0.409965 2_3:+1552952 Msa0270270:three_prime_UTR
GTGGTTGCAGACCGTTCAAT+TGG 0.415947 2_3:+1550293 Msa0270270:CDS
TTGGGAGCTTGTACGGGAAC+AGG 0.426439 2_3:-1552275 None:intergenic
TAGAAGCTTGGGAGCTTGTA+CGG 0.428330 2_3:-1552282 None:intergenic
TTTGGCACCCATGTTATTGT+TGG 0.433049 2_3:+1548597 Msa0270270:CDS
GATTTAAGTCCATGGGTCTC+TGG 0.433190 2_3:+1552810 Msa0270270:three_prime_UTR
TAAGTTATTTAAGGAGTGTA+GGG 0.433516 2_3:+1552724 Msa0270270:three_prime_UTR
AAAGCTGCTGAGATTGCAAT+TGG 0.433991 2_3:+1547029 Msa0270270:CDS
CCTGGCTATTGGGTTGTCAC+TGG 0.435676 2_3:+1552350 Msa0270270:CDS
GAATACAGGTGCCCACTGCC+TGG 0.436080 2_3:-1551300 None:intergenic
AGCTGACTTTGTTCTTCGTT+AGG 0.437061 2_3:+1552486 Msa0270270:exon
CTTATTAGCCAACACTTCAC+AGG 0.441277 2_3:+1552182 Msa0270270:CDS
TGGTGGAGCTCTTCAATTGG+TGG 0.442263 2_3:-1551257 None:intergenic
ATCTTCCTCTTGGTCCTCAA+TGG 0.443218 2_3:+1551327 Msa0270270:CDS
GTAAGTTATTTAAGGAGTGT+AGG 0.444719 2_3:+1552723 Msa0270270:three_prime_UTR
TCATTCTCGCTTGATTGAGA+TGG 0.449401 2_3:+1547130 Msa0270270:CDS
GTTATCTCTCTTGAGTTCAC+AGG 0.451893 2_3:+1546590 Msa0270270:five_prime_UTR
GTATTCAGTGATCTTCCTCT+TGG 0.451919 2_3:+1551317 Msa0270270:CDS
CCAGACTTGGCCCCTAGCCC+GGG 0.452765 2_3:-1552146 None:intergenic
TTGACTGGCAAAATTCCCTC+AGG 0.453374 2_3:+1547420 Msa0270270:CDS
AATCAGGAGTTGTCTTTGAC+TGG 0.453791 2_3:+1547405 Msa0270270:CDS
CTCAACTGTGTTGGGAGCTA+AGG 0.454561 2_3:+1552094 Msa0270270:CDS
CTCATAGAATCTCTTATCAT+AGG 0.457958 2_3:-1551934 None:intergenic
ATGTTATAACAGGTTGATGT+AGG 0.461015 2_3:+1551771 Msa0270270:intron
GGTCTCCGTCTCTATCTAGA+AGG 0.461252 2_3:+1551810 Msa0270270:CDS
CCCATCAAAAGCAAGGGTCT+TGG 0.462275 2_3:-1547499 None:intergenic
AATTGGTGGAGCTCTTCAAT+TGG 0.463212 2_3:-1551260 None:intergenic
GAGAGGTTGGGAAAGAAAGG+AGG 0.467042 2_3:+1552556 Msa0270270:three_prime_UTR
CTCAACTTGCAATTGTGCTC+CGG 0.467644 2_3:-1552030 None:intergenic
GATGACCGAGCAGTTCAATC+AGG 0.469858 2_3:+1547389 Msa0270270:intron
ACTTAAATTCTCAACTGTGT+TGG 0.471471 2_3:+1552085 Msa0270270:CDS
GAGGAGCTTTCAATAGTAAC+CGG 0.473360 2_3:+1552011 Msa0270270:CDS
TTGAAGAGATTGATGTGAAG+GGG 0.474306 2_3:+1552692 Msa0270270:three_prime_UTR
CTTTATTCATCTGGACGTCT+AGG 0.476189 2_3:+1551425 Msa0270270:CDS
ATAAATTCAGCGGTCTATCC+GGG 0.477465 2_3:+1552245 Msa0270270:CDS
GTGCAGCCAATTACTGTTTG+CGG 0.477899 2_3:-1546705 None:intergenic
TCATGTGTGCACTGCTCCTG+TGG 0.477974 2_3:+1551980 Msa0270270:CDS
TCTTGGAATTCCAGCTTCCC+AGG 0.479841 2_3:+1551282 Msa0270270:CDS
AGCAACTTTCATATTTAACT+TGG 0.479983 2_3:+1553032 Msa0270270:three_prime_UTR
GAACTTTGGTGATCAAGAAA+TGG 0.480674 2_3:+1552966 Msa0270270:three_prime_UTR
CCCGGGAGACCCATCCCACT+CGG 0.481170 2_3:-1552129 None:intergenic
GAAGCTGGAATTCCAAGAAT+TGG 0.481340 2_3:-1551277 None:intergenic
CTAGGTATTCAGTGGCAGAC+TGG 0.482502 2_3:+1551443 Msa0270270:CDS
AGAAAGCTGTTCCATCATCA+TGG 0.488153 2_3:+1547586 Msa0270270:CDS
TAGAGAGGTAATTGGAATGA+AGG 0.488757 2_3:-1550337 None:intergenic
AATTCCAGCTTCCCAGGCAG+TGG 0.490270 2_3:+1551288 Msa0270270:CDS
GGGATGAAAGGTGTTGCATA+TGG 0.493225 2_3:-1551857 None:intergenic
AGAAGCTTGGGAGCTTGTAC+GGG 0.496532 2_3:-1552281 None:intergenic
CACTGCTCCTGTGGAATCTG+AGG 0.499061 2_3:+1551989 Msa0270270:CDS
TTAAATGGAGTTCCAGGGAG+TGG 0.502695 2_3:+1550360 Msa0270270:CDS
AACAGGTTGATGTAGGTAAG+AGG 0.504904 2_3:+1551778 Msa0270270:intron
TCTGCTGATGAAGGCAAGAA+AGG 0.505394 2_3:-1552509 None:intergenic
AAGGACATTGAGATCACATC+AGG 0.507817 2_3:-1550318 None:intergenic
GTGATAAAGGTGAACGCACC+AGG 0.509935 2_3:+1547228 Msa0270270:CDS
CATTTGGATCATCTTCAAGC+TGG 0.510901 2_3:-1551893 None:intergenic
TAAAACATCCCGAGTGGGAT+GGG 0.512771 2_3:+1552120 Msa0270270:CDS
GATTCTATGAGAAGGTTCAA+TGG 0.513867 2_3:+1551946 Msa0270270:CDS
TGTTATTGTTGGTATGAAGA+TGG 0.520317 2_3:+1548608 Msa0270270:CDS
GACTAGCTGATTTAAGTCCA+TGG 0.523888 2_3:+1552802 Msa0270270:three_prime_UTR
TGAAGAGATTGATGTGAAGG+GGG 0.525146 2_3:+1552693 Msa0270270:three_prime_UTR
AGTTTAGCTTCATGGGGCCA+AGG 0.525974 2_3:+1551375 Msa0270270:CDS
ATGGTGTTCACGTAGAGCCT+TGG 0.526771 2_3:-1551392 None:intergenic
AACAATAACATGGGTGCCAA+AGG 0.530256 2_3:-1548595 None:intergenic
TTTGAAGAGATTGATGTGAA+GGG 0.530866 2_3:+1552691 Msa0270270:three_prime_UTR
GTAGGTAAGAGGCCAGTGAC+TGG 0.531568 2_3:+1551789 Msa0270270:CDS
AGAGGTTGGGAAAGAAAGGA+GGG 0.531631 2_3:+1552557 Msa0270270:three_prime_UTR
ACTACATTAGAGATCTATGT+TGG 0.536387 2_3:+1552992 Msa0270270:three_prime_UTR
AGAGGACCGCAGGAGACTCC+TGG 0.540384 2_3:+1552332 Msa0270270:CDS
TCAACTCACCTTGCTAATGC+AGG 0.543651 2_3:-1547615 None:intergenic
GCAATTGGATCCATTGGTCG+TGG 0.547894 2_3:+1547044 Msa0270270:CDS
CCGAGTGGGATGGGTCTCCC+GGG 0.548033 2_3:+1552129 Msa0270270:CDS
AATACAGGTGCCCACTGCCT+GGG 0.548056 2_3:-1551299 None:intergenic
TGAATAAAGATTTACCGGTA+TGG 0.549065 2_3:-1551411 None:intergenic
ACATCTGCTGGACGAGGAGG+CGG 0.549259 2_3:-1552218 None:intergenic
AGCTCCTCCTCAGATTCCAC+AGG 0.551132 2_3:-1551996 None:intergenic
ATATTAACATCTGCTGGACG+AGG 0.551402 2_3:-1552224 None:intergenic
AGCTGAGCTATATTGGCCAT+TGG 0.551551 2_3:-1548736 None:intergenic
GAGCTCCGTTGCTTCCATTG+AGG 0.553578 2_3:-1551341 None:intergenic
GAGATTGCAATTGGATCCAT+TGG 0.554473 2_3:+1547038 Msa0270270:CDS
ACGGGAACAGGAGGGCCGCC+CGG 0.555975 2_3:-1552263 None:intergenic
GCAGGTGGGTCCCATGATGA+TGG 0.556483 2_3:-1547597 None:intergenic
ACACTTAGTTCTGCTGATGA+AGG 0.557606 2_3:-1552518 None:intergenic
TCTTACCTTCTAGATAGAGA+CGG 0.557827 2_3:-1551815 None:intergenic
CCAGTGACAACCCAATAGCC+AGG 0.559250 2_3:-1552350 None:intergenic
AACTGTGTTGGGAGCTAAGG+AGG 0.560977 2_3:+1552097 Msa0270270:CDS
GTAAATAAAGGTTTATAGCA+TGG 0.562633 2_3:-1550392 None:intergenic
TGGCTCAAGAATCCACTCCC+TGG 0.564442 2_3:-1550372 None:intergenic
AGAGGAAGATCACTGAATAC+AGG 0.565542 2_3:-1551314 None:intergenic
ACTAGCTGATTTAAGTCCAT+GGG 0.565602 2_3:+1552803 Msa0270270:three_prime_UTR
GCTGGAATTCCAAGAATTGG+TGG 0.566479 2_3:-1551274 None:intergenic
GGAGCTTGTACGGGAACAGG+AGG 0.569208 2_3:-1552272 None:intergenic
CAAAACATCAGACCTGAACC+TGG 0.572306 2_3:-1547246 None:intergenic
GTTATTGTTGGTATGAAGAT+GGG 0.573121 2_3:+1548609 Msa0270270:CDS
TTATTAGCCAACACTTCACA+GGG 0.577018 2_3:+1552183 Msa0270270:CDS
TAGAAGGTAAGAAAAGCAAT+CGG 0.578082 2_3:+1551826 Msa0270270:CDS
ATTGAATTGAAAAGCCCTGA+GGG 0.579139 2_3:-1547435 None:intergenic
ATTCCAGCTTCCCAGGCAGT+GGG 0.581178 2_3:+1551289 Msa0270270:CDS
TTAACACCCCATCAAAAGCA+AGG 0.584296 2_3:-1547506 None:intergenic
AAAATTTATCGCATAATCAG+TGG 0.585243 2_3:+1550274 Msa0270270:CDS
TGAGATGACTAGAGGACCGC+AGG 0.585822 2_3:+1552322 Msa0270270:CDS
TGACTGGCAAAATTCCCTCA+GGG 0.586502 2_3:+1547421 Msa0270270:CDS
TCTTCATACCAACAATAACA+TGG 0.586936 2_3:-1548605 None:intergenic
TGAAGATAATGATGTAAGAG+AGG 0.587582 2_3:+1547154 Msa0270270:CDS
CCGGGAGACCCATCCCACTC+GGG 0.589214 2_3:-1552128 None:intergenic
ACTCACCTTGCTAATGCAGG+TGG 0.589366 2_3:-1547612 None:intergenic
GAAAGCTGTTCCATCATCAT+GGG 0.590835 2_3:+1547587 Msa0270270:CDS
TTGGTCCTCAATGGAAGCAA+CGG 0.591455 2_3:+1551336 Msa0270270:CDS
CACATCAGGCTCCAATTGAA+CGG 0.591595 2_3:-1550304 None:intergenic
TGCTCCTGTGGAATCTGAGG+AGG 0.592386 2_3:+1551992 Msa0270270:CDS
GTAAAACATCCCGAGTGGGA+TGG 0.595842 2_3:+1552119 Msa0270270:CDS
TATATCGTATCCACGACCAA+TGG 0.596383 2_3:-1547054 None:intergenic
GAAAAGCCCCTGTGAAGTGT+TGG 0.596845 2_3:-1552190 None:intergenic
CTCTATTAAATGGAGTTCCA+GGG 0.597190 2_3:+1550355 Msa0270270:CDS
ACTGATCTAATCAAAACAAG+AGG 0.597284 2_3:-1552844 None:intergenic
AAGTTCTTATTCACATAAGG+AGG 0.597395 2_3:+1550104 Msa0270270:CDS
TAGAGACGGAGACCAGTCAC+TGG 0.600119 2_3:-1551801 None:intergenic
CTTCTAGTCGAATATACTCT+CGG 0.601417 2_3:+1553068 Msa0270270:three_prime_UTR
CTTTACAGTTTAGCTTCATG+GGG 0.605349 2_3:+1551369 Msa0270270:CDS
CAACTCCTGATTGAACTGCT+CGG 0.606307 2_3:-1547394 None:intergenic
TGGAACTCCATTTAATAGAG+AGG 0.607859 2_3:-1550352 None:intergenic
AGTGGATATAAGTCCAGACT+TGG 0.608342 2_3:-1552159 None:intergenic
GATCATTCGCCAGAGACCCA+TGG 0.613353 2_3:-1552819 None:intergenic
AAGTTATTTAAGGAGTGTAG+GGG 0.614978 2_3:+1552725 Msa0270270:three_prime_UTR
AGGTAAGAAAAGCAATCGGT+TGG 0.619371 2_3:+1551830 Msa0270270:CDS
TGAAAGGTGTTGCATATGGA+TGG 0.621383 2_3:-1551853 None:intergenic
GGGACCCACCTGCATTAGCA+AGG 0.622805 2_3:+1547607 Msa0270270:CDS
TGATAAGAGATTCTATGAGA+AGG 0.622926 2_3:+1551938 Msa0270270:CDS
GCTCTACGTGAACACCATAC+CGG 0.625303 2_3:+1551397 Msa0270270:CDS
AAAAGGTTTCTGGATGCCAA+TGG 0.632135 2_3:+1548720 Msa0270270:CDS
ATAAAAGTCTACATTAATAG+CGG 0.634495 2_3:-1552766 None:intergenic
CTTCATACCAACAATAACAT+GGG 0.635911 2_3:-1548604 None:intergenic
TGCTTCCATTGAGGACCAAG+AGG 0.639157 2_3:-1551332 None:intergenic
CTCACCTTGCTAATGCAGGT+GGG 0.643574 2_3:-1547611 None:intergenic
TAACACCCCATCAAAAGCAA+GGG 0.645381 2_3:-1547505 None:intergenic
TTAACATCTGCTGGACGAGG+AGG 0.648626 2_3:-1552221 None:intergenic
GGAGGTAAAACATCCCGAGT+GGG 0.648984 2_3:+1552115 Msa0270270:CDS
TTTGGTAATGAAACTCCACC+AGG 0.650986 2_3:-1547185 None:intergenic
GAGCTTGTACGGGAACAGGA+GGG 0.653809 2_3:-1552271 None:intergenic
AGATAATGATGTAAGAGAGG+TGG 0.657371 2_3:+1547157 Msa0270270:CDS
TGATTTATTATGATTAGACG+AGG 0.659442 2_3:-1551471 None:intergenic
TCATGAAGAGATACATACAA+TGG 0.662017 2_3:+1552660 Msa0270270:three_prime_UTR
GACACAACTGAGATGACTAG+AGG 0.662771 2_3:+1552314 Msa0270270:CDS
GAAGTGTTGGCTAATAAGAG+TGG 0.672984 2_3:-1552177 None:intergenic
CTGGACGTCTAGGTATTCAG+TGG 0.675217 2_3:+1551435 Msa0270270:CDS
AGATGTTAATATAAATTCAG+CGG 0.677176 2_3:+1552235 Msa0270270:CDS
ATTGTTGGTATGAAGATGGG+AGG 0.685663 2_3:+1548612 Msa0270270:CDS
AGGAGGTAAAACATCCCGAG+TGG 0.699249 2_3:+1552114 Msa0270270:CDS
CAATAGCCAGGAGTCTCCTG+CGG 0.701835 2_3:-1552338 None:intergenic
TAATAGCGGAATTACAACAG+TGG 0.707534 2_3:-1552752 None:intergenic
CATTGAATTGAAAAGCCCTG+AGG 0.721249 2_3:-1547436 None:intergenic
TGATGATTATGATGACACGT+TGG 0.726229 2_3:+1552454 Msa0270270:CDS
TATTAGCCAACACTTCACAG+GGG 0.757600 2_3:+1552184 Msa0270270:CDS
AATTCAGCGGTCTATCCGGG+CGG 0.783551 2_3:+1552248 Msa0270270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATAAATTAA+TGG + chr2_3:1547909-1547928 Msa0270270:intron 0.0%
!!! AAAAATTAGATTTTTAAGTT+TGG - chr2_3:1546653-1546672 None:intergenic 10.0%
!!! AAACTTAAAAATCTAATTTT+TGG + chr2_3:1546652-1546671 Msa0270270:five_prime_UTR 10.0%
!!! TTTTATTTATAAATTAATGG+TGG + chr2_3:1547912-1547931 Msa0270270:intron 10.0%
!! AAATAGGATTAAAAATAAAT+GGG - chr2_3:1548488-1548507 None:intergenic 10.0%
!! TAAAATAGTTTACATTAATA+TGG - chr2_3:1549746-1549765 None:intergenic 10.0%
!! TATAAATATATAAATATTCC+GGG - chr2_3:1550147-1550166 None:intergenic 10.0%
!!! AAAAATCTAATTTTTGGTTT+AGG + chr2_3:1546658-1546677 Msa0270270:five_prime_UTR 15.0%
!!! AAAATCTAATTTTTGGTTTA+GGG + chr2_3:1546659-1546678 Msa0270270:five_prime_UTR 15.0%
!! TTTATCACATTTGATTAATT+TGG - chr2_3:1547216-1547235 None:intergenic 15.0%
!! AAATTAATCAAATGTGATAA+AGG + chr2_3:1547215-1547234 Msa0270270:CDS 15.0%
!! AATATGATAAAGCAATAATA+AGG - chr2_3:1548191-1548210 None:intergenic 15.0%
!!! TAATTTAGTTTATACTTTAC+AGG + chr2_3:1548345-1548364 Msa0270270:intron 15.0%
!! CAAATAGGATTAAAAATAAA+TGG - chr2_3:1548489-1548508 None:intergenic 15.0%
!!! CATTTATTTTTAATCCTATT+TGG + chr2_3:1548487-1548506 Msa0270270:intron 15.0%
!! TAATAATGATTCTCAATATT+GGG - chr2_3:1548832-1548851 None:intergenic 15.0%
!! ATAATAATGATTCTCAATAT+TGG - chr2_3:1548833-1548852 None:intergenic 15.0%
!!! TTTTCTTACAAAGTTTTTTT+TGG + chr2_3:1549335-1549354 Msa0270270:intron 15.0%
!! GTTAAACAATAGAAAAATAA+AGG + chr2_3:1549374-1549393 Msa0270270:intron 15.0%
!! TTTAGAAAATCTTAAACTAA+CGG - chr2_3:1549534-1549553 None:intergenic 15.0%
!!! TTGAAATAATCTAAAACAAA+CGG + chr2_3:1549868-1549887 Msa0270270:intron 15.0%
!!! TCATTTGAAATCAATTAATT+TGG - chr2_3:1549943-1549962 None:intergenic 15.0%
!! GCAAAAACAAAAATAATATA+AGG - chr2_3:1550209-1550228 None:intergenic 15.0%
!!! TATATTATTTTTGTTTTTGC+AGG + chr2_3:1550209-1550228 Msa0270270:intron 15.0%
!! ATTATATAATATAACAGCTT+GGG - chr2_3:1550514-1550533 None:intergenic 15.0%
!! AATTATATAATATAACAGCT+TGG - chr2_3:1550515-1550534 None:intergenic 15.0%
!!! TATTATTCTCATTATTGATT+TGG + chr2_3:1552932-1552951 Msa0270270:three_prime_UTR 15.0%
!!! TTGATTAATTTGGAAACATT+TGG - chr2_3:1547206-1547225 None:intergenic 20.0%
!!! AATTCAATGTTTGAATTTTC+TGG + chr2_3:1547450-1547469 Msa0270270:CDS 20.0%
!!! ATTCAATGTTTGAATTTTCT+GGG + chr2_3:1547451-1547470 Msa0270270:CDS 20.0%
!!! GAACCTGTTTTTATTTATAA+CGG + chr2_3:1547830-1547849 Msa0270270:intron 20.0%
!! AGAATATGATACTTGATAAA+TGG + chr2_3:1548273-1548292 Msa0270270:intron 20.0%
!!! TAAATGGTTCTAGTTAAATT+AGG + chr2_3:1548289-1548308 Msa0270270:intron 20.0%
!! TAATTATGAAAAGCAATAGT+TGG - chr2_3:1548527-1548546 None:intergenic 20.0%
!!! TTTCAATTTTTTCTGAACAT+CGG - chr2_3:1548688-1548707 None:intergenic 20.0%
!! TCAGAAAAAATTGAAAGAAA+TGG + chr2_3:1548692-1548711 Msa0270270:CDS 20.0%
!!! ATTTTTAACATATCCTGAAA+AGG - chr2_3:1548809-1548828 None:intergenic 20.0%
!! TAGAATATCTCTTCATTTAT+TGG + chr2_3:1548923-1548942 Msa0270270:intron 20.0%
!! TTTGTATTTCATTCTTATTG+TGG - chr2_3:1548979-1548998 None:intergenic 20.0%
!! GGTTATTAGTTATATATTAG+AGG + chr2_3:1549114-1549133 Msa0270270:intron 20.0%
!!! TAAGAAAAGTATATAAACCA+TGG - chr2_3:1549803-1549822 None:intergenic 20.0%
!!! CATTTTTGCTGTAAATAATT+TGG - chr2_3:1549845-1549864 None:intergenic 20.0%
!!! CAAAAATAGCACAAATTTTA+GGG - chr2_3:1549894-1549913 None:intergenic 20.0%
!!! TCAAAAATAGCACAAATTTT+AGG - chr2_3:1549895-1549914 None:intergenic 20.0%
!! TGAGGAAAATAAAATTGTTA+GGG - chr2_3:1550034-1550053 None:intergenic 20.0%
!! TGTTATATTATATAATTGCC+CGG + chr2_3:1550518-1550537 Msa0270270:intron 20.0%
!! GAATATAGATATGCTATATA+GGG - chr2_3:1550698-1550717 None:intergenic 20.0%
!! AGAATATAGATATGCTATAT+AGG - chr2_3:1550699-1550718 None:intergenic 20.0%
!!! GTTGATGTTTTATTTCATTT+TGG + chr2_3:1550867-1550886 Msa0270270:intron 20.0%
!!! AACAAAATTTCATTTGGTTT+TGG - chr2_3:1550937-1550956 None:intergenic 20.0%
!!! AAAACCAAATGAAATTTTGT+TGG + chr2_3:1550936-1550955 Msa0270270:intron 20.0%
!! AAATTACCATTCTGTAATAA+GGG - chr2_3:1551075-1551094 None:intergenic 20.0%
!! TAAATTACCATTCTGTAATA+AGG - chr2_3:1551076-1551095 None:intergenic 20.0%
!! ATTTCATGAAATCAAAATTC+AGG - chr2_3:1551118-1551137 None:intergenic 20.0%
!! AAGGAAACAAATTTAAAAGA+GGG - chr2_3:1551158-1551177 None:intergenic 20.0%
!!! TTTGTTGTCATTTATTGATT+TGG + chr2_3:1551704-1551723 Msa0270270:intron 20.0%
!! AGATGTTAATATAAATTCAG+CGG + chr2_3:1552235-1552254 Msa0270270:CDS 20.0%
!! GATAAGTTGTAAGTTATTTA+AGG + chr2_3:1552715-1552734 Msa0270270:three_prime_UTR 20.0%
!! ATAAAAGTCTACATTAATAG+CGG - chr2_3:1552769-1552788 None:intergenic 20.0%
! TGAGAGTTATTTACTTAGTA+TGG + chr2_3:1546980-1546999 Msa0270270:exon 25.0%
! ACGATATATCTTCTGATATA+AGG + chr2_3:1547069-1547088 Msa0270270:CDS 25.0%
! AAATTGTGTTTGATATCTGT+TGG + chr2_3:1547746-1547765 Msa0270270:intron 25.0%
!!! ATAGTTTTGAAGAATCAGAA+TGG + chr2_3:1547873-1547892 Msa0270270:intron 25.0%
!! TTTGAAATTCTATGTGCATT+TGG + chr2_3:1547976-1547995 Msa0270270:intron 25.0%
! CATAACAACAGTAGATATAA+TGG - chr2_3:1548044-1548063 None:intergenic 25.0%
! TTATCATATTCTGATTAAGC+TGG + chr2_3:1548201-1548220 Msa0270270:intron 25.0%
! TATCATATTCTGATTAAGCT+GGG + chr2_3:1548202-1548221 Msa0270270:intron 25.0%
!!! AGTTAAATTAGGATTGGTTT+TGG + chr2_3:1548300-1548319 Msa0270270:intron 25.0%
! AACTTTAATTGATTGTCCTA+GGG + chr2_3:1548424-1548443 Msa0270270:intron 25.0%
! ATTAAAAATAAATGGGAGCT+GGG - chr2_3:1548481-1548500 None:intergenic 25.0%
!! TTTCACAAACCTTTTCATTT+GGG - chr2_3:1548776-1548795 None:intergenic 25.0%
!! ATTTCACAAACCTTTTCATT+TGG - chr2_3:1548777-1548796 None:intergenic 25.0%
!! AAATTATGCTTTTCCTTTTC+AGG + chr2_3:1548793-1548812 Msa0270270:intron 25.0%
! TATAACTAATAACCTACATG+TGG - chr2_3:1549108-1549127 None:intergenic 25.0%
! TTAAAAAAATTGTTACCGTG+AGG + chr2_3:1549451-1549470 Msa0270270:intron 25.0%
!!! TGTGCTATTTTTGATTTGTA+AGG + chr2_3:1549901-1549920 Msa0270270:intron 25.0%
! GTGAGGAAAATAAAATTGTT+AGG - chr2_3:1550035-1550054 None:intergenic 25.0%
!!! ATTTTATTTTCCTCACAGTT+TGG + chr2_3:1550039-1550058 Msa0270270:intron 25.0%
! TTATGTGAATAAGAACTTGA+TGG - chr2_3:1550102-1550121 None:intergenic 25.0%
! ATCAAGTTCTTATTCACATA+AGG + chr2_3:1550101-1550120 Msa0270270:CDS 25.0%
! AAAATTTATCGCATAATCAG+TGG + chr2_3:1550274-1550293 Msa0270270:CDS 25.0%
! GTAAATAAAGGTTTATAGCA+TGG - chr2_3:1550395-1550414 None:intergenic 25.0%
! GTTATATTATATAATTGCCC+GGG + chr2_3:1550519-1550538 Msa0270270:intron 25.0%
! TGTATTCCTTATATGTAAGT+AGG + chr2_3:1550564-1550583 Msa0270270:intron 25.0%
! GTATTCCTTATATGTAAGTA+GGG + chr2_3:1550565-1550584 Msa0270270:intron 25.0%
! TATTCCTTATATGTAAGTAG+GGG + chr2_3:1550566-1550585 Msa0270270:intron 25.0%
! AAAACATCAACAAGCATTAT+GGG - chr2_3:1550858-1550877 None:intergenic 25.0%
! TAAAACATCAACAAGCATTA+TGG - chr2_3:1550859-1550878 None:intergenic 25.0%
!!! AAAATTTCATTTGGTTTTGG+AGG - chr2_3:1550934-1550953 None:intergenic 25.0%
! TTCTCCAACAAAATTTCATT+TGG - chr2_3:1550943-1550962 None:intergenic 25.0%
! GTATGTTTCAGTACTTAATA+AGG - chr2_3:1551047-1551066 None:intergenic 25.0%
! TTCATGAAATTAAATTCCCA+TGG + chr2_3:1551128-1551147 Msa0270270:intron 25.0%
! GAAGGAAACAAATTTAAAAG+AGG - chr2_3:1551159-1551178 None:intergenic 25.0%
! AATGATGAAACATTTCAAAC+TGG - chr2_3:1551214-1551233 None:intergenic 25.0%
! TGATTTATTATGATTAGACG+AGG - chr2_3:1551474-1551493 None:intergenic 25.0%
! AGGAAAATTACTAAATCAGT+GGG + chr2_3:1551520-1551539 Msa0270270:intron 25.0%
! TTGTTTATATTCACATGTAG+TGG + chr2_3:1551559-1551578 Msa0270270:intron 25.0%
!!! AATTCACTGTATTTTAACCT+TGG + chr2_3:1551670-1551689 Msa0270270:intron 25.0%
! CAATAAATGACAACAAACTT+CGG - chr2_3:1551701-1551720 None:intergenic 25.0%
!! TGTTATAACATGAAGTATTC+CGG - chr2_3:1551762-1551781 None:intergenic 25.0%
! GAATTTATATTAACATCTGC+TGG - chr2_3:1552233-1552252 None:intergenic 25.0%
!!! TCAACAAATTTTAGAAGCTT+GGG - chr2_3:1552296-1552315 None:intergenic 25.0%
! AGAAGGGAAAAATTTCTTTA+CGG + chr2_3:1552390-1552409 Msa0270270:CDS 25.0%
!! TTTGTTGACTATGATATTAC+CGG + chr2_3:1552424-1552443 Msa0270270:CDS 25.0%
!!! GAACTAAGTGTTCATTTTTT+AGG + chr2_3:1552530-1552549 Msa0270270:three_prime_UTR 25.0%
!!! TAAGTGTTCATTTTTTAGGA+GGG + chr2_3:1552534-1552553 Msa0270270:three_prime_UTR 25.0%
!!! GTGTTTTAATCACAGTAAAA+AGG - chr2_3:1552633-1552652 None:intergenic 25.0%
!! TAAGTTATTTAAGGAGTGTA+GGG + chr2_3:1552724-1552743 Msa0270270:three_prime_UTR 25.0%
! AGCAACTTTCATATTTAACT+TGG + chr2_3:1553032-1553051 Msa0270270:three_prime_UTR 25.0%
TTGTACACTATGCACAATTT+GGG + chr2_3:1546846-1546865 Msa0270270:intron 30.0%
!! ATAAGGCTCAAGTTTTGTAA+AGG + chr2_3:1547086-1547105 Msa0270270:CDS 30.0%
TGAAGATAATGATGTAAGAG+AGG + chr2_3:1547154-1547173 Msa0270270:CDS 30.0%
! TGATGTTTTGTCTTTTCAAC+AGG + chr2_3:1547259-1547278 Msa0270270:CDS 30.0%
TAAAGCAAAGCAAAGCAATT+AGG - chr2_3:1547324-1547343 None:intergenic 30.0%
! TAATAATACTTGGCTTGACA+TGG - chr2_3:1547669-1547688 None:intergenic 30.0%
CATCAGAGTGTAATAATACT+TGG - chr2_3:1547679-1547698 None:intergenic 30.0%
TAAATATGACCTATCAAGGA+AGG - chr2_3:1547776-1547795 None:intergenic 30.0%
TTCCTTGATAGGTCATATTT+AGG + chr2_3:1547775-1547794 Msa0270270:intron 30.0%
CAGCCGTTATAAATAAAAAC+AGG - chr2_3:1547836-1547855 None:intergenic 30.0%
ACAGATAGATGCAAAAATAC+TGG - chr2_3:1548112-1548131 None:intergenic 30.0%
! GGTTCTAGTTAAATTAGGAT+TGG + chr2_3:1548294-1548313 Msa0270270:intron 30.0%
TTAATGCAACAATTCTCTTG+AGG + chr2_3:1548386-1548405 Msa0270270:intron 30.0%
CAACTTTAATTGATTGTCCT+AGG + chr2_3:1548423-1548442 Msa0270270:intron 30.0%
ACTTTAATTGATTGTCCTAG+GGG + chr2_3:1548425-1548444 Msa0270270:intron 30.0%
AATTGAATTAGATAACCCCT+AGG - chr2_3:1548443-1548462 None:intergenic 30.0%
AGGGGTTATCTAATTCAATT+AGG + chr2_3:1548443-1548462 Msa0270270:intron 30.0%
GATTAAAAATAAATGGGAGC+TGG - chr2_3:1548482-1548501 None:intergenic 30.0%
GAAAAGCAATCGATAAATCT+GGG - chr2_3:1548551-1548570 None:intergenic 30.0%
TGAAAAGCAATCGATAAATC+TGG - chr2_3:1548552-1548571 None:intergenic 30.0%
!! TTGCTTTTCATAATTAACCC+AGG + chr2_3:1548531-1548550 Msa0270270:intron 30.0%
CTTCATACCAACAATAACAT+GGG - chr2_3:1548607-1548626 None:intergenic 30.0%
TCTTCATACCAACAATAACA+TGG - chr2_3:1548608-1548627 None:intergenic 30.0%
TGTTATTGTTGGTATGAAGA+TGG + chr2_3:1548608-1548627 Msa0270270:CDS 30.0%
GTTATTGTTGGTATGAAGAT+GGG + chr2_3:1548609-1548628 Msa0270270:CDS 30.0%
TGAAAGAAATGGCAGATAAA+AGG + chr2_3:1548703-1548722 Msa0270270:CDS 30.0%
! TCAAGTTTTCCCAAATGAAA+AGG + chr2_3:1548764-1548783 Msa0270270:CDS 30.0%
! GAAGTACTTTGTGATAAAGA+GGG - chr2_3:1548957-1548976 None:intergenic 30.0%
GCTTAATTCCAGAAAATTCA+GGG - chr2_3:1549140-1549159 None:intergenic 30.0%
TGCTTAATTCCAGAAAATTC+AGG - chr2_3:1549141-1549160 None:intergenic 30.0%
!!! GAATTTTCTGGAATTAAGCA+AGG + chr2_3:1549141-1549160 Msa0270270:intron 30.0%
! TTACATGTTTTCTTGGATCT+AGG - chr2_3:1549176-1549195 None:intergenic 30.0%
AAGTTCTTATTCACATAAGG+AGG + chr2_3:1550104-1550123 Msa0270270:CDS 30.0%
! ATATAGTAAGCTTTTGCAAG+AGG + chr2_3:1550232-1550251 Msa0270270:CDS 30.0%
CCATTTAATAGAGAGGTAAT+TGG - chr2_3:1550348-1550367 None:intergenic 30.0%
CCAATTACCTCTCTATTAAA+TGG + chr2_3:1550345-1550364 Msa0270270:CDS 30.0%
TTTGCTCACATCGTAAATAA+AGG - chr2_3:1550407-1550426 None:intergenic 30.0%
ATTCCTTATATGTAAGTAGG+GGG + chr2_3:1550567-1550586 Msa0270270:intron 30.0%
! AGGTAGTTATGGTTTGTATT+TGG + chr2_3:1550595-1550614 Msa0270270:intron 30.0%
!! TGGTTTGTATTTGGTAGTTT+TGG + chr2_3:1550604-1550623 Msa0270270:intron 30.0%
! GGAAAAAGTTCATTCTCTTT+TGG + chr2_3:1550625-1550644 Msa0270270:intron 30.0%
TAGATCATTAGGAACTTATC+AGG + chr2_3:1550799-1550818 Msa0270270:intron 30.0%
TCTGGTTGTAAAAACTATAG+TGG - chr2_3:1550827-1550846 None:intergenic 30.0%
ATATGATCAGTCAACAATGA+AGG - chr2_3:1551177-1551196 None:intergenic 30.0%
! ATCTTTACAGTTTAGCTTCA+TGG + chr2_3:1551367-1551386 Msa0270270:CDS 30.0%
! TCTTTACAGTTTAGCTTCAT+GGG + chr2_3:1551368-1551387 Msa0270270:CDS 30.0%
TGAATAAAGATTTACCGGTA+TGG - chr2_3:1551414-1551433 None:intergenic 30.0%
CCAGATGAATAAAGATTTAC+CGG - chr2_3:1551419-1551438 None:intergenic 30.0%
GAGGAAAATTACTAAATCAG+TGG + chr2_3:1551519-1551538 Msa0270270:intron 30.0%
! GTTATAACATGAAGTATTCC+GGG - chr2_3:1551761-1551780 None:intergenic 30.0%
GGAATACTTCATGTTATAAC+AGG + chr2_3:1551761-1551780 Msa0270270:intron 30.0%
!! ATGTTATAACAGGTTGATGT+AGG + chr2_3:1551771-1551790 Msa0270270:intron 30.0%
TAGAAGGTAAGAAAAGCAAT+CGG + chr2_3:1551826-1551845 Msa0270270:CDS 30.0%
!! TTTCGTCTGAAGTTTTCATT+TGG - chr2_3:1551912-1551931 None:intergenic 30.0%
CTCATAGAATCTCTTATCAT+AGG - chr2_3:1551937-1551956 None:intergenic 30.0%
TGATAAGAGATTCTATGAGA+AGG + chr2_3:1551938-1551957 Msa0270270:CDS 30.0%
! CAATTGCAAGTTGAGAATTA+TGG + chr2_3:1552038-1552057 Msa0270270:CDS 30.0%
ACTTAAATTCTCAACTGTGT+TGG + chr2_3:1552085-1552104 Msa0270270:CDS 30.0%
CTTAAATTCTCAACTGTGTT+GGG + chr2_3:1552086-1552105 Msa0270270:CDS 30.0%
!! GTCAACAAATTTTAGAAGCT+TGG - chr2_3:1552297-1552316 None:intergenic 30.0%
GAAGGGAAAAATTTCTTTAC+GGG + chr2_3:1552391-1552410 Msa0270270:CDS 30.0%
TCATAATCATCATCATCATC+CGG - chr2_3:1552446-1552465 None:intergenic 30.0%
!!! CTAAGTGTTCATTTTTTAGG+AGG + chr2_3:1552533-1552552 Msa0270270:three_prime_UTR 30.0%
GTATTCGTCATCAAGATAAT+TGG + chr2_3:1552579-1552598 Msa0270270:three_prime_UTR 30.0%
!!! TGGTTTTAGTTTTCCTAATC+AGG + chr2_3:1552599-1552618 Msa0270270:three_prime_UTR 30.0%
!!! TTTAGTTTTCCTAATCAGGT+AGG + chr2_3:1552603-1552622 Msa0270270:three_prime_UTR 30.0%
!! TTAGTTTTCCTAATCAGGTA+GGG + chr2_3:1552604-1552623 Msa0270270:three_prime_UTR 30.0%
TCATGAAGAGATACATACAA+TGG + chr2_3:1552660-1552679 Msa0270270:three_prime_UTR 30.0%
!! TTTTGAAGAGATTGATGTGA+AGG + chr2_3:1552690-1552709 Msa0270270:three_prime_UTR 30.0%
TTTGAAGAGATTGATGTGAA+GGG + chr2_3:1552691-1552710 Msa0270270:three_prime_UTR 30.0%
! GTAAGTTATTTAAGGAGTGT+AGG + chr2_3:1552723-1552742 Msa0270270:three_prime_UTR 30.0%
! AAGTTATTTAAGGAGTGTAG+GGG + chr2_3:1552725-1552744 Msa0270270:three_prime_UTR 30.0%
!!! AAATCAGCTAGTCATTTTTC+TGG - chr2_3:1552795-1552814 None:intergenic 30.0%
ACTGATCTAATCAAAACAAG+AGG - chr2_3:1552847-1552866 None:intergenic 30.0%
!!! CTTGTTTTGATTAGATCAGT+TGG + chr2_3:1552847-1552866 Msa0270270:three_prime_UTR 30.0%
ACTACATTAGAGATCTATGT+TGG + chr2_3:1552992-1553011 Msa0270270:three_prime_UTR 30.0%
TTTGTCTTTGCATGTCTTGT+TGG + chr2_3:1546801-1546820 Msa0270270:intron 35.0%
GTTGTACACTATGCACAATT+TGG + chr2_3:1546845-1546864 Msa0270270:intron 35.0%
ATGGCACCTAAAAATGAAGA+TGG + chr2_3:1546999-1547018 Msa0270270:CDS 35.0%
!! TGAGCTCCATCTTCATTTTT+AGG - chr2_3:1547008-1547027 None:intergenic 35.0%
AGATAATGATGTAAGAGAGG+TGG + chr2_3:1547157-1547176 Msa0270270:CDS 35.0%
! TAGGAGATTCTGAAAACAGA+AGG - chr2_3:1547305-1547324 None:intergenic 35.0%
ATTGAATTGAAAAGCCCTGA+GGG - chr2_3:1547438-1547457 None:intergenic 35.0%
!! TGTTTGAATTTTCTGGGAGT+TGG + chr2_3:1547457-1547476 Msa0270270:CDS 35.0%
TGCCTAAATATGACCTATCA+AGG - chr2_3:1547780-1547799 None:intergenic 35.0%
! TACACACACACAGTTCATTT+TGG + chr2_3:1547801-1547820 Msa0270270:intron 35.0%
CACTGCAGTTATATAAATCC+TGG - chr2_3:1548069-1548088 None:intergenic 35.0%
!!! AATTTTTTCTGAACATCGGC+AGG - chr2_3:1548684-1548703 None:intergenic 35.0%
AATGGCAGATAAAAGGTTTC+TGG + chr2_3:1548710-1548729 Msa0270270:CDS 35.0%
!! GGAAGTACTTTGTGATAAAG+AGG - chr2_3:1548958-1548977 None:intergenic 35.0%
! CACTCAGTTACATGTTTTCT+TGG - chr2_3:1549183-1549202 None:intergenic 35.0%
CAAGAAAACATGTAACTGAG+TGG + chr2_3:1549181-1549200 Msa0270270:intron 35.0%
TAACTGAGTGGAAGTTTAAG+AGG + chr2_3:1549193-1549212 Msa0270270:intron 35.0%
!!! AAAGCTTTTAGTTTTGAGCC+AGG + chr2_3:1549217-1549236 Msa0270270:intron 35.0%
GCTGAATAACAAATTGTTCC+TGG - chr2_3:1549238-1549257 None:intergenic 35.0%
!! GTAGATGTGTTGCTATTTCA+TGG + chr2_3:1549265-1549284 Msa0270270:intron 35.0%
!! TTGCTATTTCATGGAAGCAT+CGG + chr2_3:1549274-1549293 Msa0270270:intron 35.0%
!!! GGAATATAGTTTTTTCCGAG+TGG + chr2_3:1549295-1549314 Msa0270270:intron 35.0%
!!! TATAGTTTTTTCCGAGTGGA+TGG + chr2_3:1549299-1549318 Msa0270270:intron 35.0%
!! TGGATAACATTTTGACCTCA+CGG - chr2_3:1549469-1549488 None:intergenic 35.0%
! ATGTTATCCAATGACTTGCA+TGG + chr2_3:1549479-1549498 Msa0270270:intron 35.0%
! TGTTATCCAATGACTTGCAT+GGG + chr2_3:1549480-1549499 Msa0270270:intron 35.0%
!!! CTTGAATGCTTTTTCAACCA+TGG + chr2_3:1549783-1549802 Msa0270270:intron 35.0%
GTATGCTTAGAACATTTACC+CGG + chr2_3:1550126-1550145 Msa0270270:intron 35.0%
TAGAGAGGTAATTGGAATGA+AGG - chr2_3:1550340-1550359 None:intergenic 35.0%
TGGAACTCCATTTAATAGAG+AGG - chr2_3:1550355-1550374 None:intergenic 35.0%
TCTCTATTAAATGGAGTTCC+AGG + chr2_3:1550354-1550373 Msa0270270:CDS 35.0%
CTCTATTAAATGGAGTTCCA+GGG + chr2_3:1550355-1550374 Msa0270270:CDS 35.0%
TAACCCCCTACTTACATATA+AGG - chr2_3:1550573-1550592 None:intergenic 35.0%
TTATATGTAAGTAGGGGGTT+AGG + chr2_3:1550572-1550591 Msa0270270:intron 35.0%
AAGTTAATATCTCGCCCAAA+GGG + chr2_3:1550758-1550777 Msa0270270:intron 35.0%
TTCCTAATGATCTACTTACG+CGG - chr2_3:1550793-1550812 None:intergenic 35.0%
!!! CAGCATTTTTCAAGTCTTGT+GGG - chr2_3:1551003-1551022 None:intergenic 35.0%
!!! TCAGCATTTTTCAAGTCTTG+TGG - chr2_3:1551004-1551023 None:intergenic 35.0%
TTTAAAAGAGGGTGATCCAT+GGG - chr2_3:1551147-1551166 None:intergenic 35.0%
ATTTAAAAGAGGGTGATCCA+TGG - chr2_3:1551148-1551167 None:intergenic 35.0%
! CTTTACAGTTTAGCTTCATG+GGG + chr2_3:1551369-1551388 Msa0270270:CDS 35.0%
CCGGTAAATCTTTATTCATC+TGG + chr2_3:1551416-1551435 Msa0270270:CDS 35.0%
! GCATCTTTATTTGCAAGTCT+AGG - chr2_3:1551587-1551606 None:intergenic 35.0%
GCAACATTTATTCTAATGCC+CGG + chr2_3:1551740-1551759 Msa0270270:intron 35.0%
TCTTACCTTCTAGATAGAGA+CGG - chr2_3:1551818-1551837 None:intergenic 35.0%
!! AGATTTTTGGAAGGGATGAA+AGG - chr2_3:1551872-1551891 None:intergenic 35.0%
!! AAGCTGGAAGATTTTTGGAA+GGG - chr2_3:1551880-1551899 None:intergenic 35.0%
! TCTTCAAGCTGGAAGATTTT+TGG - chr2_3:1551885-1551904 None:intergenic 35.0%
GATTCTATGAGAAGGTTCAA+TGG + chr2_3:1551946-1551965 Msa0270270:CDS 35.0%
TTATTAGCCAACACTTCACA+GGG + chr2_3:1552183-1552202 Msa0270270:CDS 35.0%
TATAAATTCAGCGGTCTATC+CGG + chr2_3:1552244-1552263 Msa0270270:CDS 35.0%
TGATGATTATGATGACACGT+TGG + chr2_3:1552454-1552473 Msa0270270:CDS 35.0%
TTGAAGAGATTGATGTGAAG+GGG + chr2_3:1552692-1552711 Msa0270270:three_prime_UTR 35.0%
! TAATAGCGGAATTACAACAG+TGG - chr2_3:1552755-1552774 None:intergenic 35.0%
! ACTAGCTGATTTAAGTCCAT+GGG + chr2_3:1552803-1552822 Msa0270270:three_prime_UTR 35.0%
TGGAAATTGTAGACGAACTT+TGG + chr2_3:1552952-1552971 Msa0270270:three_prime_UTR 35.0%
! GAACTTTGGTGATCAAGAAA+TGG + chr2_3:1552966-1552985 Msa0270270:three_prime_UTR 35.0%
GTTATCTCTCTTGAGTTCAC+AGG + chr2_3:1546590-1546609 Msa0270270:five_prime_UTR 40.0%
! TTTGCATGTCTTGTTGGTGT+GGG + chr2_3:1546807-1546826 Msa0270270:intron 40.0%
AAAGCTGCTGAGATTGCAAT+TGG + chr2_3:1547029-1547048 Msa0270270:CDS 40.0%
GAGATTGCAATTGGATCCAT+TGG + chr2_3:1547038-1547057 Msa0270270:CDS 40.0%
TATATCGTATCCACGACCAA+TGG - chr2_3:1547057-1547076 None:intergenic 40.0%
TCATTCTCGCTTGATTGAGA+TGG + chr2_3:1547130-1547149 Msa0270270:CDS 40.0%
!! TTTGGTAATGAAACTCCACC+AGG - chr2_3:1547188-1547207 None:intergenic 40.0%
GAAAAGAAGCAAACCCTTGT+TGG - chr2_3:1547368-1547387 None:intergenic 40.0%
AATCAGGAGTTGTCTTTGAC+TGG + chr2_3:1547405-1547424 Msa0270270:CDS 40.0%
CATTGAATTGAAAAGCCCTG+AGG - chr2_3:1547439-1547458 None:intergenic 40.0%
TAACACCCCATCAAAAGCAA+GGG - chr2_3:1547508-1547527 None:intergenic 40.0%
TTAACACCCCATCAAAAGCA+AGG - chr2_3:1547509-1547528 None:intergenic 40.0%
AGAAAGCTGTTCCATCATCA+TGG + chr2_3:1547586-1547605 Msa0270270:CDS 40.0%
GAAAGCTGTTCCATCATCAT+GGG + chr2_3:1547587-1547606 Msa0270270:CDS 40.0%
TCTGATGTATGTAGCCAACA+AGG + chr2_3:1547692-1547711 Msa0270270:intron 40.0%
CTGATGTATGTAGCCAACAA+GGG + chr2_3:1547693-1547712 Msa0270270:intron 40.0%
!! GTTGGTAATCCTTCCTTGAT+AGG + chr2_3:1547764-1547783 Msa0270270:intron 40.0%
ATCTACTGTTGTTATGCTCC+AGG + chr2_3:1548048-1548067 Msa0270270:intron 40.0%
CAAAAAACAACTGAAACCCG+AGG - chr2_3:1548242-1548261 None:intergenic 40.0%
!! CCAAAGGTATCGATAAACCT+GGG - chr2_3:1548582-1548601 None:intergenic 40.0%
AACAATAACATGGGTGCCAA+AGG - chr2_3:1548598-1548617 None:intergenic 40.0%
TTTGGCACCCATGTTATTGT+TGG + chr2_3:1548597-1548616 Msa0270270:CDS 40.0%
ATTGTTGGTATGAAGATGGG+AGG + chr2_3:1548612-1548631 Msa0270270:CDS 40.0%
! AAAAGGTTTCTGGATGCCAA+TGG + chr2_3:1548720-1548739 Msa0270270:CDS 40.0%
GATCAGAAGCTGAGCTATAT+TGG - chr2_3:1548746-1548765 None:intergenic 40.0%
TTGTGATAAAGAGGGTCTAG+TGG - chr2_3:1548949-1548968 None:intergenic 40.0%
! ATTAGAGGCCCTGAATTTTC+TGG + chr2_3:1549129-1549148 Msa0270270:intron 40.0%
TAGCAACACATCTACATTGC+AGG - chr2_3:1549260-1549279 None:intergenic 40.0%
AAATCTCAGAACCATCCACT+CGG - chr2_3:1549313-1549332 None:intergenic 40.0%
ACAACTGCACAAACTATGTG+AGG + chr2_3:1549402-1549421 Msa0270270:intron 40.0%
TGCACAAACTATGTGAGGTA+TGG + chr2_3:1549407-1549426 Msa0270270:intron 40.0%
GCACAAACTATGTGAGGTAT+GGG + chr2_3:1549408-1549427 Msa0270270:intron 40.0%
AGTTCACGTCAACTCTTGTT+AGG + chr2_3:1549999-1550018 Msa0270270:intron 40.0%
! TTTCCTCACAGTTTGGAATC+AGG + chr2_3:1550046-1550065 Msa0270270:intron 40.0%
AAGGACATTGAGATCACATC+AGG - chr2_3:1550321-1550340 None:intergenic 40.0%
!!! AACTGTTGCCTGTGTTGTTT+TGG + chr2_3:1550488-1550507 Msa0270270:intron 40.0%
TGAGAGTCATAGTTAGCTAG+AGG - chr2_3:1550726-1550745 None:intergenic 40.0%
CAAGTTAATATCTCGCCCAA+AGG + chr2_3:1550757-1550776 Msa0270270:intron 40.0%
ATCCGCGTAAGTAGATCATT+AGG + chr2_3:1550788-1550807 Msa0270270:intron 40.0%
! TAGTTTTTACAACCAGACCC+AGG + chr2_3:1550830-1550849 Msa0270270:intron 40.0%
AACAAGCATTATGGGTTCCT+GGG - chr2_3:1550850-1550869 None:intergenic 40.0%
!! GAAATGTGTGTGCTAGCTTT+AGG + chr2_3:1550960-1550979 Msa0270270:intron 40.0%
!! CTAGCTTTAGGAGTGTGTAT+AGG + chr2_3:1550972-1550991 Msa0270270:intron 40.0%
CAGACACCCTTATTACAGAA+TGG + chr2_3:1551066-1551085 Msa0270270:intron 40.0%
AATTGGTGGAGCTCTTCAAT+TGG - chr2_3:1551263-1551282 None:intergenic 40.0%
GAAGCTGGAATTCCAAGAAT+TGG - chr2_3:1551280-1551299 None:intergenic 40.0%
AGAGGAAGATCACTGAATAC+AGG - chr2_3:1551317-1551336 None:intergenic 40.0%
GTATTCAGTGATCTTCCTCT+TGG + chr2_3:1551317-1551336 Msa0270270:CDS 40.0%
CTTTATTCATCTGGACGTCT+AGG + chr2_3:1551425-1551444 Msa0270270:CDS 40.0%
TAAATCATGCTCGTGTCCTT+TGG + chr2_3:1551487-1551506 Msa0270270:CDS 40.0%
TTTCCTCCAACACAAACCAA+AGG - chr2_3:1551506-1551525 None:intergenic 40.0%
! ATCAGTGGGAAGAAGCTTTT+AGG + chr2_3:1551534-1551553 Msa0270270:intron 40.0%
AACAAACTTCGGAATGTCCA+AGG - chr2_3:1551690-1551709 None:intergenic 40.0%
!! AACAGGTTGATGTAGGTAAG+AGG + chr2_3:1551778-1551797 Msa0270270:intron 40.0%
AGGTAAGAAAAGCAATCGGT+TGG + chr2_3:1551830-1551849 Msa0270270:CDS 40.0%
!! TGAAAGGTGTTGCATATGGA+TGG - chr2_3:1551856-1551875 None:intergenic 40.0%
!! CAAGCTGGAAGATTTTTGGA+AGG - chr2_3:1551881-1551900 None:intergenic 40.0%
CATTTGGATCATCTTCAAGC+TGG - chr2_3:1551896-1551915 None:intergenic 40.0%
GAGGAGCTTTCAATAGTAAC+CGG + chr2_3:1552011-1552030 Msa0270270:CDS 40.0%
AGTGGATATAAGTCCAGACT+TGG - chr2_3:1552162-1552181 None:intergenic 40.0%
!! GAAGTGTTGGCTAATAAGAG+TGG - chr2_3:1552180-1552199 None:intergenic 40.0%
CTTATTAGCCAACACTTCAC+AGG + chr2_3:1552182-1552201 Msa0270270:CDS 40.0%
TATTAGCCAACACTTCACAG+GGG + chr2_3:1552184-1552203 Msa0270270:CDS 40.0%
ATATTAACATCTGCTGGACG+AGG - chr2_3:1552227-1552246 None:intergenic 40.0%
ATAAATTCAGCGGTCTATCC+GGG + chr2_3:1552245-1552264 Msa0270270:CDS 40.0%
!! AGCAAGACTTTTGGTTGAGA+AGG + chr2_3:1552373-1552392 Msa0270270:CDS 40.0%
!! GCAAGACTTTTGGTTGAGAA+GGG + chr2_3:1552374-1552393 Msa0270270:CDS 40.0%
! AGCTGACTTTGTTCTTCGTT+AGG + chr2_3:1552486-1552505 Msa0270270:exon 40.0%
!! ACACTTAGTTCTGCTGATGA+AGG - chr2_3:1552521-1552540 None:intergenic 40.0%
!!! GTTCATTTTTTAGGAGGGAG+AGG + chr2_3:1552539-1552558 Msa0270270:three_prime_UTR 40.0%
!!! ATTTTTTAGGAGGGAGAGGT+TGG + chr2_3:1552543-1552562 Msa0270270:three_prime_UTR 40.0%
!!! TTTTTTAGGAGGGAGAGGTT+GGG + chr2_3:1552544-1552563 Msa0270270:three_prime_UTR 40.0%
TGAAGAGATTGATGTGAAGG+GGG + chr2_3:1552693-1552712 Msa0270270:three_prime_UTR 40.0%
! GACTAGCTGATTTAAGTCCA+TGG + chr2_3:1552802-1552821 Msa0270270:three_prime_UTR 40.0%
GACGATCCGCAAACAGTAAT+TGG + chr2_3:1546699-1546718 Msa0270270:five_prime_UTR 45.0%
GTGCAGCCAATTACTGTTTG+CGG - chr2_3:1546708-1546727 None:intergenic 45.0%
! CTTTGCATGTCTTGTTGGTG+TGG + chr2_3:1546806-1546825 Msa0270270:intron 45.0%
!! GTAAGAGAGGTGGTTTTACC+TGG + chr2_3:1547167-1547186 Msa0270270:CDS 45.0%
CAAAACATCAGACCTGAACC+TGG - chr2_3:1547249-1547268 None:intergenic 45.0%
!! AAACCCTTGTTGGCTTTGGA+GGG - chr2_3:1547358-1547377 None:intergenic 45.0%
!! AAGCAAACCCTTGTTGGCTT+TGG - chr2_3:1547362-1547381 None:intergenic 45.0%
CAACTCCTGATTGAACTGCT+CGG - chr2_3:1547397-1547416 None:intergenic 45.0%
TTGACTGGCAAAATTCCCTC+AGG + chr2_3:1547420-1547439 Msa0270270:CDS 45.0%
TGACTGGCAAAATTCCCTCA+GGG + chr2_3:1547421-1547440 Msa0270270:CDS 45.0%
!! ACCAAGACCCTTGCTTTTGA+TGG + chr2_3:1547498-1547517 Msa0270270:CDS 45.0%
!! CCAAGACCCTTGCTTTTGAT+GGG + chr2_3:1547499-1547518 Msa0270270:CDS 45.0%
!! CAAGACCCTTGCTTTTGATG+GGG + chr2_3:1547500-1547519 Msa0270270:CDS 45.0%
TCAACTCACCTTGCTAATGC+AGG - chr2_3:1547618-1547637 None:intergenic 45.0%
TGTATGTAGCCAACAAGGGT+CGG + chr2_3:1547697-1547716 Msa0270270:intron 45.0%
GGGCATTTGACATATCTCCT+CGG + chr2_3:1548222-1548241 Msa0270270:intron 45.0%
GGCATTTGACATATCTCCTC+GGG + chr2_3:1548223-1548242 Msa0270270:intron 45.0%
CAAGAGTCTCGAGTCCAAAT+AGG - chr2_3:1548504-1548523 None:intergenic 45.0%
CCCAGGTTTATCGATACCTT+TGG + chr2_3:1548579-1548598 Msa0270270:intron 45.0%
!! GCCAAAGGTATCGATAAACC+TGG - chr2_3:1548583-1548602 None:intergenic 45.0%
! TTTTCTGAACATCGGCAGGT+TGG - chr2_3:1548680-1548699 None:intergenic 45.0%
AGCTGAGCTATATTGGCCAT+TGG - chr2_3:1548739-1548758 None:intergenic 45.0%
AAACTGGCACGTACAAAGCT+AGG - chr2_3:1549016-1549035 None:intergenic 45.0%
GGAAAATCACGTGGGAAAAC+TGG - chr2_3:1549032-1549051 None:intergenic 45.0%
CCCTAGTTGAAGTCTCTTTG+GGG - chr2_3:1549057-1549076 None:intergenic 45.0%
CCCCAAAGAGACTTCAACTA+GGG + chr2_3:1549054-1549073 Msa0270270:intron 45.0%
CCCCTAGTTGAAGTCTCTTT+GGG - chr2_3:1549058-1549077 None:intergenic 45.0%
CCCAAAGAGACTTCAACTAG+GGG + chr2_3:1549055-1549074 Msa0270270:intron 45.0%
ACCCCTAGTTGAAGTCTCTT+TGG - chr2_3:1549059-1549078 None:intergenic 45.0%
TGAGACTTTCAGCCACATGT+AGG + chr2_3:1549093-1549112 Msa0270270:intron 45.0%
CATTCTCCCATGCAAGTCAT+TGG - chr2_3:1549489-1549508 None:intergenic 45.0%
! ATGACTTGCATGGGAGAATG+AGG + chr2_3:1549489-1549508 Msa0270270:intron 45.0%
! ATGAGGAGTGTGCGAGTATA+AGG + chr2_3:1549506-1549525 Msa0270270:intron 45.0%
! TGAGGAGTGTGCGAGTATAA+GGG + chr2_3:1549507-1549526 Msa0270270:intron 45.0%
CACGTCAACTCTTGTTAGGT+TGG + chr2_3:1550003-1550022 Msa0270270:intron 45.0%
! GTAAGCTTTTGCAAGAGGAG+AGG + chr2_3:1550237-1550256 Msa0270270:CDS 45.0%
CACATCAGGCTCCAATTGAA+CGG - chr2_3:1550307-1550326 None:intergenic 45.0%
TTAAATGGAGTTCCAGGGAG+TGG + chr2_3:1550360-1550379 Msa0270270:CDS 45.0%
TATGTAAGTAGGGGGTTAGG+AGG + chr2_3:1550575-1550594 Msa0270270:intron 45.0%
!!! TTTTGGAGTTTCGCAACTCC+TGG + chr2_3:1550642-1550661 Msa0270270:intron 45.0%
ACTATAGCAACATGCTGTCC+AGG - chr2_3:1550663-1550682 None:intergenic 45.0%
CAACAAGCATTATGGGTTCC+TGG - chr2_3:1550851-1550870 None:intergenic 45.0%
!! GCTTTAGGAGTGTGTATAGG+TGG + chr2_3:1550975-1550994 Msa0270270:intron 45.0%
TGAAGAGCTCCACCAATTCT+TGG + chr2_3:1551265-1551284 Msa0270270:CDS 45.0%
GCTGGAATTCCAAGAATTGG+TGG - chr2_3:1551277-1551296 None:intergenic 45.0%
ATCTTCCTCTTGGTCCTCAA+TGG + chr2_3:1551327-1551346 Msa0270270:CDS 45.0%
TTGGTCCTCAATGGAAGCAA+CGG + chr2_3:1551336-1551355 Msa0270270:CDS 45.0%
!! TCGTGTCCTTTGGTTTGTGT+TGG + chr2_3:1551497-1551516 Msa0270270:intron 45.0%
!! TGTCCTTTGGTTTGTGTTGG+AGG + chr2_3:1551500-1551519 Msa0270270:intron 45.0%
!! GGGATGAAAGGTGTTGCATA+TGG - chr2_3:1551860-1551879 None:intergenic 45.0%
CTCAACTTGCAATTGTGCTC+CGG - chr2_3:1552033-1552052 None:intergenic 45.0%
TAAAACATCCCGAGTGGGAT+GGG + chr2_3:1552120-1552139 Msa0270270:CDS 45.0%
TAGAAGCTTGGGAGCTTGTA+CGG - chr2_3:1552285-1552304 None:intergenic 45.0%
GACACAACTGAGATGACTAG+AGG + chr2_3:1552314-1552333 Msa0270270:CDS 45.0%
! TGTCACTGGAGCAAGACTTT+TGG + chr2_3:1552364-1552383 Msa0270270:CDS 45.0%
TCTGCTGATGAAGGCAAGAA+AGG - chr2_3:1552512-1552531 None:intergenic 45.0%
AGAGGTTGGGAAAGAAAGGA+GGG + chr2_3:1552557-1552576 Msa0270270:three_prime_UTR 45.0%
! GTTTTCCTAATCAGGTAGGG+TGG + chr2_3:1552607-1552626 Msa0270270:three_prime_UTR 45.0%
GATTTAAGTCCATGGGTCTC+TGG + chr2_3:1552810-1552829 Msa0270270:three_prime_UTR 45.0%
!! TTATAAATATATAAATATTC+CGG - chr2_3:1550148-1550167 None:intergenic 5.0%
GCAATTGGATCCATTGGTCG+TGG + chr2_3:1547044-1547063 Msa0270270:CDS 50.0%
!! AGAGAGGTGGTTTTACCTGG+TGG + chr2_3:1547170-1547189 Msa0270270:CDS 50.0%
GTGATAAAGGTGAACGCACC+AGG + chr2_3:1547228-1547247 Msa0270270:CDS 50.0%
!! CAAACCCTTGTTGGCTTTGG+AGG - chr2_3:1547359-1547378 None:intergenic 50.0%
GATGACCGAGCAGTTCAATC+AGG + chr2_3:1547389-1547408 Msa0270270:intron 50.0%
CCCATCAAAAGCAAGGGTCT+TGG - chr2_3:1547502-1547521 None:intergenic 50.0%
CTCACCTTGCTAATGCAGGT+GGG - chr2_3:1547614-1547633 None:intergenic 50.0%
ACTCACCTTGCTAATGCAGG+TGG - chr2_3:1547615-1547634 None:intergenic 50.0%
TTGGGGCAGGAAAATCACGT+GGG - chr2_3:1549040-1549059 None:intergenic 50.0%
! TTTGGGGCAGGAAAATCACG+TGG - chr2_3:1549041-1549060 None:intergenic 50.0%
!! AGTTGAAGTCTCTTTGGGGC+AGG - chr2_3:1549053-1549072 None:intergenic 50.0%
GCCCCAAAGAGACTTCAACT+AGG + chr2_3:1549053-1549072 Msa0270270:intron 50.0%
TGTGAGGTATGGGTACAGTC+TGG + chr2_3:1549418-1549437 Msa0270270:intron 50.0%
GTGAGGTATGGGTACAGTCT+GGG + chr2_3:1549419-1549438 Msa0270270:intron 50.0%
TGAGGTATGGGTACAGTCTG+GGG + chr2_3:1549420-1549439 Msa0270270:intron 50.0%
CGTCCTGATTCCAAACTGTG+AGG - chr2_3:1550052-1550071 None:intergenic 50.0%
! AGCTTTTGCAAGAGGAGAGG+TGG + chr2_3:1550240-1550259 Msa0270270:CDS 50.0%
GTGGTTGCAGACCGTTCAAT+TGG + chr2_3:1550293-1550312 Msa0270270:CDS 50.0%
AGCTTGGGCCAAAACAACAC+AGG - chr2_3:1550499-1550518 None:intergenic 50.0%
AGGGGGTTAGGAGGTAGTTA+TGG + chr2_3:1550584-1550603 Msa0270270:intron 50.0%
TGGTGGAGCTCTTCAATTGG+TGG - chr2_3:1551260-1551279 None:intergenic 50.0%
TCTTGGAATTCCAGCTTCCC+AGG + chr2_3:1551282-1551301 Msa0270270:CDS 50.0%
TGCTTCCATTGAGGACCAAG+AGG - chr2_3:1551335-1551354 None:intergenic 50.0%
! AGTTTAGCTTCATGGGGCCA+AGG + chr2_3:1551375-1551394 Msa0270270:CDS 50.0%
ATGGTGTTCACGTAGAGCCT+TGG - chr2_3:1551395-1551414 None:intergenic 50.0%
GCTCTACGTGAACACCATAC+CGG + chr2_3:1551397-1551416 Msa0270270:CDS 50.0%
CTGGACGTCTAGGTATTCAG+TGG + chr2_3:1551435-1551454 Msa0270270:CDS 50.0%
CTAGGTATTCAGTGGCAGAC+TGG + chr2_3:1551443-1551462 Msa0270270:CDS 50.0%
GGTCTCCGTCTCTATCTAGA+AGG + chr2_3:1551810-1551829 Msa0270270:CDS 50.0%
CTCAACTGTGTTGGGAGCTA+AGG + chr2_3:1552094-1552113 Msa0270270:CDS 50.0%
AACTGTGTTGGGAGCTAAGG+AGG + chr2_3:1552097-1552116 Msa0270270:CDS 50.0%
AGGAGGTAAAACATCCCGAG+TGG + chr2_3:1552114-1552133 Msa0270270:CDS 50.0%
GGAGGTAAAACATCCCGAGT+GGG + chr2_3:1552115-1552134 Msa0270270:CDS 50.0%
GTAAAACATCCCGAGTGGGA+TGG + chr2_3:1552119-1552138 Msa0270270:CDS 50.0%
GAAAAGCCCCTGTGAAGTGT+TGG - chr2_3:1552193-1552212 None:intergenic 50.0%
TTAACATCTGCTGGACGAGG+AGG - chr2_3:1552224-1552243 None:intergenic 50.0%
AGAAGCTTGGGAGCTTGTAC+GGG - chr2_3:1552284-1552303 None:intergenic 50.0%
AGGGAGAGGTTGGGAAAGAA+AGG + chr2_3:1552553-1552572 Msa0270270:three_prime_UTR 50.0%
GAGAGGTTGGGAAAGAAAGG+AGG + chr2_3:1552556-1552575 Msa0270270:three_prime_UTR 50.0%
AAAGGCCACCCTACCTGATT+AGG - chr2_3:1552615-1552634 None:intergenic 50.0%
AAGGTGAACGCACCAGGTTC+AGG + chr2_3:1547234-1547253 Msa0270270:CDS 55.0%
!! CCTTGTTGGCTTTGGAGGGA+GGG - chr2_3:1547354-1547373 None:intergenic 55.0%
CCTCCCTCCAAAGCCAACAA+GGG + chr2_3:1547352-1547371 Msa0270270:intron 55.0%
CCAGTTAAGCCGACCCTTGT+TGG - chr2_3:1547709-1547728 None:intergenic 55.0%
! CCAACAAGGGTCGGCTTAAC+TGG + chr2_3:1547706-1547725 Msa0270270:intron 55.0%
! CAAGGGTCGGCTTAACTGGT+AGG + chr2_3:1547710-1547729 Msa0270270:intron 55.0%
TGGCTCAAGAATCCACTCCC+TGG - chr2_3:1550375-1550394 None:intergenic 55.0%
! CGCGGATCGATTCTCCCTTT+GGG - chr2_3:1550775-1550794 None:intergenic 55.0%
! ACGCGGATCGATTCTCCCTT+TGG - chr2_3:1550776-1550795 None:intergenic 55.0%
GCATTATGGGTTCCTGGGTC+TGG - chr2_3:1550845-1550864 None:intergenic 55.0%
AATTCCAGCTTCCCAGGCAG+TGG + chr2_3:1551288-1551307 Msa0270270:CDS 55.0%
ATTCCAGCTTCCCAGGCAGT+GGG + chr2_3:1551289-1551308 Msa0270270:CDS 55.0%
AATACAGGTGCCCACTGCCT+GGG - chr2_3:1551302-1551321 None:intergenic 55.0%
GAGCTCCGTTGCTTCCATTG+AGG - chr2_3:1551344-1551363 None:intergenic 55.0%
GTAGGTAAGAGGCCAGTGAC+TGG + chr2_3:1551789-1551808 Msa0270270:CDS 55.0%
TAGAGACGGAGACCAGTCAC+TGG - chr2_3:1551804-1551823 None:intergenic 55.0%
TCATGTGTGCACTGCTCCTG+TGG + chr2_3:1551980-1551999 Msa0270270:CDS 55.0%
CACTGCTCCTGTGGAATCTG+AGG + chr2_3:1551989-1552008 Msa0270270:CDS 55.0%
TGCTCCTGTGGAATCTGAGG+AGG + chr2_3:1551992-1552011 Msa0270270:CDS 55.0%
AGCTCCTCCTCAGATTCCAC+AGG - chr2_3:1551999-1552018 None:intergenic 55.0%
AATTCAGCGGTCTATCCGGG+CGG + chr2_3:1552248-1552267 Msa0270270:CDS 55.0%
GAGCTTGTACGGGAACAGGA+GGG - chr2_3:1552274-1552293 None:intergenic 55.0%
TTGGGAGCTTGTACGGGAAC+AGG - chr2_3:1552278-1552297 None:intergenic 55.0%
TGAGATGACTAGAGGACCGC+AGG + chr2_3:1552322-1552341 Msa0270270:CDS 55.0%
CAATAGCCAGGAGTCTCCTG+CGG - chr2_3:1552341-1552360 None:intergenic 55.0%
GCAGGAGACTCCTGGCTATT+GGG + chr2_3:1552340-1552359 Msa0270270:CDS 55.0%
CCAGTGACAACCCAATAGCC+AGG - chr2_3:1552353-1552372 None:intergenic 55.0%
! CCTGGCTATTGGGTTGTCAC+TGG + chr2_3:1552350-1552369 Msa0270270:CDS 55.0%
GATCATTCGCCAGAGACCCA+TGG - chr2_3:1552822-1552841 None:intergenic 55.0%
CCCTCCCTCCAAAGCCAACA+AGG + chr2_3:1547351-1547370 Msa0270270:intron 60.0%
!! CCCTTGTTGGCTTTGGAGGG+AGG - chr2_3:1547355-1547374 None:intergenic 60.0%
GCAGGTGGGTCCCATGATGA+TGG - chr2_3:1547600-1547619 None:intergenic 60.0%
GGGACCCACCTGCATTAGCA+AGG + chr2_3:1547607-1547626 Msa0270270:CDS 60.0%
GAATACAGGTGCCCACTGCC+TGG - chr2_3:1551303-1551322 None:intergenic 60.0%
ACATCTGCTGGACGAGGAGG+CGG - chr2_3:1552221-1552240 None:intergenic 60.0%
GGAGCTTGTACGGGAACAGG+AGG - chr2_3:1552275-1552294 None:intergenic 60.0%
CGCAGGAGACTCCTGGCTAT+TGG + chr2_3:1552339-1552358 Msa0270270:CDS 60.0%
TCCAGACTTGGCCCCTAGCC+CGG - chr2_3:1552150-1552169 None:intergenic 65.0%
AGAGGACCGCAGGAGACTCC+TGG + chr2_3:1552332-1552351 Msa0270270:CDS 65.0%
GTGCCCACTGCCTGGGAAGC+TGG - chr2_3:1551295-1551314 None:intergenic 70.0%
CCGGGAGACCCATCCCACTC+GGG - chr2_3:1552131-1552150 None:intergenic 70.0%
CCCGAGTGGGATGGGTCTCC+CGG + chr2_3:1552128-1552147 Msa0270270:CDS 70.0%
CCCGGGAGACCCATCCCACT+CGG - chr2_3:1552132-1552151 None:intergenic 70.0%
CCGAGTGGGATGGGTCTCCC+GGG + chr2_3:1552129-1552148 Msa0270270:CDS 70.0%
TGGGATGGGTCTCCCGGGCT+AGG + chr2_3:1552134-1552153 Msa0270270:CDS 70.0%
GGGATGGGTCTCCCGGGCTA+GGG + chr2_3:1552135-1552154 Msa0270270:CDS 70.0%
! GGATGGGTCTCCCGGGCTAG+GGG + chr2_3:1552136-1552155 Msa0270270:CDS 70.0%
CCAGACTTGGCCCCTAGCCC+GGG - chr2_3:1552149-1552168 None:intergenic 70.0%
! CCCGGGCTAGGGGCCAAGTC+TGG + chr2_3:1552146-1552165 Msa0270270:CDS 75.0%
ACGGGAACAGGAGGGCCGCC+CGG - chr2_3:1552266-1552285 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1546555 1553089 1546555 ID=Msa0270270;Name=Msa0270270
chr2_3 mRNA 1546555 1553089 1546555 ID=Msa0270270-mRNA-1;Parent=Msa0270270;Name=Msa0270270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=198|0.85|0.87|1|0.85|0.75|8|602|646
chr2_3 exon 1546555 1546733 1546555 ID=Msa0270270-mRNA-1:exon:648;Parent=Msa0270270-mRNA-1
chr2_3 exon 1546980 1547280 1546980 ID=Msa0270270-mRNA-1:exon:649;Parent=Msa0270270-mRNA-1
chr2_3 exon 1547390 1547628 1547390 ID=Msa0270270-mRNA-1:exon:650;Parent=Msa0270270-mRNA-1
chr2_3 exon 1548584 1548785 1548584 ID=Msa0270270-mRNA-1:exon:651;Parent=Msa0270270-mRNA-1
chr2_3 exon 1550057 1550125 1550057 ID=Msa0270270-mRNA-1:exon:652;Parent=Msa0270270-mRNA-1
chr2_3 exon 1550231 1550417 1550231 ID=Msa0270270-mRNA-1:exon:653;Parent=Msa0270270-mRNA-1
chr2_3 exon 1551252 1551508 1551252 ID=Msa0270270-mRNA-1:exon:654;Parent=Msa0270270-mRNA-1
chr2_3 exon 1551783 1553089 1551783 ID=Msa0270270-mRNA-1:exon:655;Parent=Msa0270270-mRNA-1
chr2_3 five_prime_UTR 1546555 1546733 1546555 ID=Msa0270270-mRNA-1:five_prime_utr;Parent=Msa0270270-mRNA-1
chr2_3 five_prime_UTR 1546980 1546998 1546980 ID=Msa0270270-mRNA-1:five_prime_utr;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1546999 1547280 1546999 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1547390 1547628 1547390 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1548584 1548785 1548584 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1550057 1550125 1550057 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1550231 1550417 1550231 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1551252 1551508 1551252 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 CDS 1551783 1552487 1551783 ID=Msa0270270-mRNA-1:cds;Parent=Msa0270270-mRNA-1
chr2_3 three_prime_UTR 1552488 1553089 1552488 ID=Msa0270270-mRNA-1:three_prime_utr;Parent=Msa0270270-mRNA-1
Gene Sequence

>Msa0270270

ATGGCACCTAAAAATGAAGATGGAGCTCATAAAGCTGCTGAGATTGCAATTGGATCCATTGGTCGTGGATACGATATATCTTCTGATATAAGGCTCAAGTTTTGTAAAGGTGATTCTAATTCTAATTCTATTCATTCTCGCTTGATTGAGATGGATGAAGATAATGATGTAAGAGAGGTGGTTTTACCTGGTGGAGTTTCATTACCAAATGTTTCCAAATTAATCAAATGTGATAAAGGTGAACGCACCAGGTTCAGGTCTGATGTTTTGTCTTTTCAACAGATGACCGAGCAGTTCAATCAGGAGTTGTCTTTGACTGGCAAAATTCCCTCAGGGCTTTTCAATTCAATGTTTGAATTTTCTGGGAGTTGGCAGAAAGATGCAGCGCATACCAAGACCCTTGCTTTTGATGGGGTGTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGCTACTTTGCGATCATGTTAAGAAAGCTGTTCCATCATCATGGGACCCACCTGCATTAGCAAGGTTTATCGATACCTTTGGCACCCATGTTATTGTTGGTATGAAGATGGGAGGAAAAGATGTAATATATTTAAAGCAGCAGCACTCATCAACTCTCCAACCTGCCGATGTTCAGAAAAAATTGAAAGAAATGGCAGATAAAAGGTTTCTGGATGCCAATGGCCAATATAGCTCAGCTTCTGATCAAGTTTTCCCAAATGAAAAGTTTGGAATCAGGACGCAGAGACTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATAGTAAGCTTTTGCAAGAGGAGAGGTGGAAGTGATGACAAAAATTTATCGCATAATCAGTGGTTGCAGACCGTTCAATTGGAGCCTGATGTGATCTCAATGTCCTTCATTCCAATTACCTCTCTATTAAATGGAGTTCCAGGGAGTGGATTCTTGAGCCATGCTATAAACCTTTATTTACGATATAAACCACCAATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTTCCCAGGCAGTGGGCACCTGTATTCAGTGATCTTCCTCTTGGTCCTCAATGGAAGCAACGGAGCTCTGCATCTTTACAGTTTAGCTTCATGGGGCCAAGGCTCTACGTGAACACCATACCGGTAAATCTTTATTCATCTGGACGTCTAGGTATTCAGTGGCAGACTGGAAGTGCCTCGTCTAATCATAATAAATCATGCTCGTGTCCTTTGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTCTATCTAGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATATGCAACACCTTTCATCCCTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTCAGACGAAAGTCCTATGATAAGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCTGTGGAATCTGAGGAGGAGCTTTCAATAGTAACCGGAGCACAATTGCAAGTTGAGAATTATGGCTTTAAAAATATACTCTTCTTAAGACTTAAATTCTCAACTGTGTTGGGAGCTAAGGAGGTAAAACATCCCGAGTGGGATGGGTCTCCCGGGCTAGGGGCCAAGTCTGGACTTATATCCACTCTTATTAGCCAACACTTCACAGGGGCTTTTCAGAAGCCGCCTCCTCGTCCAGCAGATGTTAATATAAATTCAGCGGTCTATCCGGGCGGCCCTCCTGTTCCCGTACAAGCTCCCAAGCTTCTAAAATTTGTTGACACAACTGAGATGACTAGAGGACCGCAGGAGACTCCTGGCTATTGGGTTGTCACTGGAGCAAGACTTTTGGTTGAGAAGGGAAAAATTTCTTTACGGGTTAAGTATTCTTTGTTGACTATGATATTACCGGATGATGATGATGATTATGATGACACGTTGGATGATCAGTAG
Protein sequence

>Msa0270270

MAPKNEDGAHKAAEIAIGSIGRGYDISSDIRLKFCKGDSNSNSIHSRLIEMDEDNDVREVVLPGGVSLPNVSKLIKCDKGERTRFRSDVLSFQQMTEQFNQELSLTGKIPSGLFNSMFEFSGSWQKDAAHTKTLAFDGVLITLYTVALEKSQMLLCDHVKKAVPSSWDPPALARFIDTFGTHVIVGMKMGGKDVIYLKQQHSSTLQPADVQKKLKEMADKRFLDANGQYSSASDQVFPNEKFGIRTQRLTFANISPSSSYSHKEDIVSFCKRRGGSDDKNLSHNQWLQTVQLEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSDLPLGPQWKQRSSASLQFSFMGPRLYVNTIPVNLYSSGRLGIQWQTGSASSNHNKSCSCPLVDVGKRPVTGLRLYLEGKKSNRLAIHMQHLSSLPKIFQLEDDPNENFRRKSYDKRFYEKVQWKNFSHVCTAPVESEEELSIVTGAQLQVENYGFKNILFLRLKFSTVLGAKEVKHPEWDGSPGLGAKSGLISTLISQHFTGAFQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQETPGYWVVTGARLLVEKGKISLRVKYSLLTMILPDDDDDYDDTLDDQ*