AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881020 MtrunA17_Chr5g0448051 99.550 666 3 0 1 666 1 666 0.0 1367
Msa0881020 MtrunA17_Chr5g0445111 69.412 680 193 2 1 665 1 680 0.0 996
Msa0881020 MtrunA17_Chr8g0338551 68.837 645 200 1 1 644 1 645 0.0 925
Msa0881020 MtrunA17_Chr7g0234481 67.470 664 205 4 1 661 1 656 0.0 910
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881020 AT5G35700.1 79.116 656 135 2 1 656 1 654 0.0 1082
Msa0881020 AT2G04750.1 73.605 663 161 4 1 661 1 651 0.0 1003
Msa0881020 AT4G26700.4 68.833 677 194 4 1 661 1 676 0.0 956
Msa0881020 AT4G26700.2 68.833 677 194 4 1 661 1 676 0.0 956
Msa0881020 AT4G26700.1 68.833 677 194 4 1 661 1 676 0.0 956
Msa0881020 AT5G55400.1 67.249 687 193 7 1 658 1 684 0.0 947
Msa0881020 AT5G55400.2 67.249 687 193 7 1 658 1 684 0.0 947
Msa0881020 AT5G55400.3 67.249 687 193 7 1 658 1 684 0.0 947
Msa0881020 AT5G48460.1 66.261 658 216 3 1 656 1 654 0.0 903
Msa0881020 AT4G26700.5 72.077 573 158 2 1 572 1 572 0.0 864
Msa0881020 AT4G26700.6 72.077 573 158 2 1 572 1 572 0.0 864
Msa0881020 AT4G26700.3 72.077 573 158 2 1 572 1 572 0.0 864
Msa0881020 AT4G26700.7 71.961 510 127 3 167 661 19 527 0.0 755
Msa0881020 AT4G26700.7 24.336 226 153 5 146 366 256 468 2.28e-11 67.4

Find 162 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTTCAATTTCTTGAAAA+TGG 0.097004 6_1:-27952409 None:intergenic
GCAGATGGGCCTGCAGTTTC+TGG 0.145741 6_1:-27954890 None:intergenic
TGTTTATTTGTAGCCTTATT+TGG 0.199374 6_1:+27953750 Msa0881020:intron
CTTATTAATGTTGCTGTTCC+TGG 0.208314 6_1:+27953499 Msa0881020:CDS
GAAGAAAACTCCTCAACTTT+TGG 0.232213 6_1:+27953974 Msa0881020:CDS
TGAATCTCTGTCGGCATTAA+AGG 0.238674 6_1:+27958208 Msa0881020:three_prime_UTR
GTGCAACAAATGCAAGATTA+AGG 0.241539 6_1:-27955024 None:intergenic
TCTTTCTGTCGGATCACTTA+TGG 0.263323 6_1:-27954918 None:intergenic
TTCCGAAATGGCATCTTTAT+AGG 0.267092 6_1:-27955847 None:intergenic
GAAGCTACAGGTGATGTTTC+TGG 0.283137 6_1:-27958084 None:intergenic
CTGATGCTGATATACTAAAC+TGG 0.292071 6_1:+27956994 Msa0881020:CDS
TAATATTGGTACACAGGATA+TGG 0.301639 6_1:+27953633 Msa0881020:CDS
CTCCATTTCAGATGTTCTTC+CGG 0.303748 6_1:-27957039 None:intergenic
CTCAATTCAGCAAAGGCTAT+TGG 0.304700 6_1:+27953598 Msa0881020:CDS
GTGTTCTTGTTTCTGATCAA+TGG 0.308745 6_1:+27952164 Msa0881020:CDS
GTCCTCAGGTAACAGGAAAA+TGG 0.310800 6_1:-27957752 None:intergenic
ATCAGACCAAGTACCAAATA+AGG 0.331284 6_1:-27953763 None:intergenic
ATTGTTGAAAGTGAGAAAAT+TGG 0.333157 6_1:-27951891 None:intergenic
CTCAATTTCCTTCTCCTTCG+CGG 0.336250 6_1:+27951835 Msa0881020:five_prime_UTR
CAAGTATAAGTTCGATAGTT+GGG 0.349516 6_1:+27958574 Msa0881020:three_prime_UTR
CAGTTCTCCACTTTCCGAAA+TGG 0.351333 6_1:-27955859 None:intergenic
CTCCTATAAAGATGCCATTT+CGG 0.357411 6_1:+27955845 Msa0881020:CDS
TTGTAGCCTTATTTGGTACT+TGG 0.358094 6_1:+27953757 Msa0881020:intron
CGATTATGTCCTCAGGTAAC+AGG 0.359547 6_1:-27957759 None:intergenic
TCAATTCAGCAAAGGCTATT+GGG 0.370233 6_1:+27953599 Msa0881020:CDS
GGAATTAGTGGAAGATGATA+AGG 0.375109 6_1:+27953995 Msa0881020:CDS
AAGCAATTAACGTACCTTAT+GGG 0.377264 6_1:-27951981 None:intergenic
ATAAAGTGAGTATCATCTTC+TGG 0.378823 6_1:-27958011 None:intergenic
ATTATCATCAATAGCTAAAT+CGG 0.379443 6_1:-27958148 None:intergenic
CGCACACATTAACAGTTACT+TGG 0.389361 6_1:+27953286 Msa0881020:CDS
GGAAGAGTCGTATCAGAATA+TGG 0.390337 6_1:+27952473 Msa0881020:CDS
ATCAGTGTTGCCAGAAAACT+TGG 0.390508 6_1:+27957724 Msa0881020:CDS
GCCTTCAATTTCTTGAAAAT+GGG 0.394045 6_1:-27952408 None:intergenic
GACCCTTCAACTATGTCCTT+TGG 0.396033 6_1:-27954995 None:intergenic
GGGTGCACAGTGGTTAATAT+TGG 0.401432 6_1:+27953619 Msa0881020:CDS
CTAAAGATGGAGTCCTGCTT+TGG 0.403603 6_1:+27953375 Msa0881020:CDS
TTCATCAATCTTAACCCATA+AGG 0.404315 6_1:+27951967 Msa0881020:five_prime_UTR
TGGAGCCAAGGGTGGTCAAC+TGG 0.404329 6_1:+27957500 Msa0881020:CDS
AATGGAGTGCAAGCACGAAT+TGG 0.405359 6_1:-27958516 None:intergenic
GCATTTGTAGACGGATCAAT+TGG 0.408423 6_1:-27953338 None:intergenic
CGCTGATCATTTACCAAAGC+AGG 0.410747 6_1:-27953388 None:intergenic
TTGTTGAAAGTGAGAAAATT+GGG 0.412898 6_1:-27951890 None:intergenic
TCCGACAGAAAGAGCAAATA+TGG 0.413008 6_1:+27954928 Msa0881020:CDS
TTTCACCTGGATCTGTCAAT+TGG 0.414508 6_1:+27955806 Msa0881020:CDS
ACTGGAGTTTAGTTACTAAA+GGG 0.417956 6_1:+27957518 Msa0881020:CDS
ATCAGTAATCTCTTTACCTT+GGG 0.422621 6_1:-27956976 None:intergenic
AAGAAAGATGCTTCAGACTC+TGG 0.423959 6_1:+27955592 Msa0881020:CDS
GGGAATAAGAAGCTCTTACT+AGG 0.424845 6_1:+27955955 Msa0881020:CDS
GAAGAACCACAGATAATAGA+AGG 0.426400 6_1:+27958358 Msa0881020:three_prime_UTR
CATTTCAATAAAACCTTGTC+CGG 0.427856 6_1:-27954166 None:intergenic
TCTATTAGAAGTTCTTGATA+AGG 0.431418 6_1:+27955783 Msa0881020:CDS
TGTATCTGAAAGAACTCAAT+CGG 0.434854 6_1:+27952359 Msa0881020:CDS
TTAATTCGACTTGAGTGAAC+TGG 0.435059 6_1:-27952195 None:intergenic
GGATGAGATTAAGGCTGTAT+TGG 0.438071 6_1:+27952452 Msa0881020:CDS
AGCCGGAAGAACATCTGAAA+TGG 0.438304 6_1:+27957037 Msa0881020:CDS
AGATTCACACTGCCAGCTTA+AGG 0.440565 6_1:-27958192 None:intergenic
TCAATTTCCTTCTCCTTCGC+GGG 0.440596 6_1:+27951836 Msa0881020:five_prime_UTR
AACTGGAGTTTAGTTACTAA+AGG 0.442884 6_1:+27957517 Msa0881020:CDS
AGCACGAATTGGAGTAATCT+TGG 0.443446 6_1:-27958505 None:intergenic
TCAAGTATAAGTTCGATAGT+TGG 0.444798 6_1:+27958573 Msa0881020:three_prime_UTR
CATTTACTAAGGAAAAGTTT+AGG 0.445102 6_1:-27955909 None:intergenic
AAAAGTAACCATACCTATGC+TGG 0.448298 6_1:-27955054 None:intergenic
CAAACTCGAGCTGCAGCAAA+AGG 0.449356 6_1:+27953173 Msa0881020:CDS
TGCGCCGAGCACCAAGAGGC+CGG 0.456344 6_1:-27958309 None:intergenic
CATAACCAGCTTTCTTCAAG+TGG 0.460935 6_1:-27954198 None:intergenic
TTGTTTGATCTTGCTAAAGA+TGG 0.461184 6_1:+27953362 Msa0881020:CDS
CATCAGTAATCTCTTTACCT+TGG 0.462922 6_1:-27956977 None:intergenic
AGCGAGCCATTAACACAAAA+CGG 0.464056 6_1:+27953533 Msa0881020:CDS
AGCAAATATGGTTCTTGAGC+AGG 0.464906 6_1:+27954940 Msa0881020:CDS
TTATTCCCAATAATAAGAAA+AGG 0.464932 6_1:+27958450 Msa0881020:three_prime_UTR
TTATTAATGTTGCTGTTCCT+GGG 0.467543 6_1:+27953500 Msa0881020:CDS
TGCTTCCAATTGACAGATCC+AGG 0.469124 6_1:-27955811 None:intergenic
GTTACCAGCAACATTTACTA+AGG 0.474649 6_1:-27955920 None:intergenic
CTGAATTGAGGCCAAGGGTG+TGG 0.475848 6_1:-27953585 None:intergenic
TATTCCCAATAATAAGAAAA+GGG 0.477067 6_1:+27958451 Msa0881020:three_prime_UTR
AATTTCCACTTGAAGAAAGC+TGG 0.477622 6_1:+27954193 Msa0881020:CDS
CATGTTGAAAGTTGAAACTT+TGG 0.478498 6_1:-27952128 None:intergenic
ACCATATTTGCTCTTTCTGT+CGG 0.484244 6_1:-27954929 None:intergenic
AAATTTCTCATCTGATGTAA+AGG 0.484697 6_1:+27954234 Msa0881020:CDS
TCACTTATGGTCAAGGCAGA+TGG 0.486966 6_1:-27954905 None:intergenic
ACAAATGCAAGATTAAGGTT+AGG 0.489655 6_1:-27955019 None:intergenic
GAAAGACGAAGCCGGCCTCT+TGG 0.490893 6_1:+27958298 Msa0881020:three_prime_UTR
AAACTCCAGTTGACCACCCT+TGG 0.493668 6_1:-27957505 None:intergenic
AAAGATGCCATTTCGGAAAG+TGG 0.495109 6_1:+27955852 Msa0881020:CDS
CAATCGGGTCGTGTTGTTGT+GGG 0.495264 6_1:+27952375 Msa0881020:CDS
TCGCCATCTGCTGAAGCTAC+AGG 0.496898 6_1:-27958096 None:intergenic
CAATAGCCTTTGCTGAATTG+AGG 0.498086 6_1:-27953597 None:intergenic
TCTGATTTCACAAATAATCA+AGG 0.499124 6_1:+27953780 Msa0881020:CDS
TTCAATTTCTTGAAAATGGG+AGG 0.499738 6_1:-27952405 None:intergenic
GCTGGTAACGATATTGTTCA+AGG 0.500025 6_1:+27955934 Msa0881020:CDS
AGACTCTGGATCAACAGTCT+TGG 0.504040 6_1:+27955606 Msa0881020:CDS
TCAATCGGGTCGTGTTGTTG+TGG 0.506562 6_1:+27952374 Msa0881020:CDS
ACTCCAAAGGACATAGTTGA+AGG 0.507026 6_1:+27954992 Msa0881020:CDS
CACTTATGGTCAAGGCAGAT+GGG 0.511464 6_1:-27954904 None:intergenic
ATTAAAGGATGTCTGTCAAA+AGG 0.512704 6_1:+27958223 Msa0881020:three_prime_UTR
ATCTGAAATGGAGAGTTTCA+AGG 0.513085 6_1:+27957049 Msa0881020:CDS
TTGAAGCAAACAACAAAATG+AGG 0.514413 6_1:+27958246 Msa0881020:three_prime_UTR
CGAAATGGCATCTTTATAGG+AGG 0.519018 6_1:-27955844 None:intergenic
TTAGTTACTAAAGGGGAGAC+TGG 0.520211 6_1:+27957526 Msa0881020:CDS
GCGAGCCATTAACACAAAAC+GGG 0.525388 6_1:+27953534 Msa0881020:CDS
GTTCTTGATAAGGTTTCACC+TGG 0.533370 6_1:+27955793 Msa0881020:CDS
GACAAAATGGCAGGATGTGG+AGG 0.537970 6_1:+27954126 Msa0881020:intron
TCCACTAATTCCAAAAGTTG+AGG 0.538135 6_1:-27953984 None:intergenic
TTTGAGCGCTGTGGAGCCAA+GGG 0.539077 6_1:+27957489 Msa0881020:CDS
CTGATGATGCACAGACATCT+CGG 0.539124 6_1:+27955568 Msa0881020:CDS
CAAGATCCTTCTATTATCTG+TGG 0.539228 6_1:-27958364 None:intergenic
TATCTGCTAGCATCATGTAC+TGG 0.540376 6_1:+27958031 Msa0881020:CDS
GGTACACAGGATATGGTTGA+AGG 0.543260 6_1:+27953640 Msa0881020:CDS
GATAGGACCCGCGAAGGAGA+AGG 0.543720 6_1:-27951843 None:intergenic
CTCAAGGAAGAAAATTCCGT+TGG 0.548350 6_1:-27957464 None:intergenic
TGGATCTGTCAATTGGAAGC+AGG 0.548732 6_1:+27955813 Msa0881020:CDS
CAAAACGGGATCTTAATCCA+TGG 0.551814 6_1:+27953548 Msa0881020:CDS
GAAAGTTGAAACTTTGGTTG+AGG 0.551877 6_1:-27952122 None:intergenic
TGATGATGCACAGACATCTC+GGG 0.552373 6_1:+27955569 Msa0881020:CDS
CTTACCTCGATTATGTCCTC+AGG 0.553465 6_1:-27957766 None:intergenic
TGCAATTAATGAATCTGAGA+AGG 0.554719 6_1:+27953253 Msa0881020:CDS
GCTCTTGCTCCAGAAACTGC+AGG 0.556106 6_1:+27954881 Msa0881020:CDS
AATGCCAACTCTCCTTAAGC+TGG 0.557503 6_1:+27958180 Msa0881020:exon
CAACTATGTCCTTTGGAGTG+AGG 0.559053 6_1:-27954988 None:intergenic
AAGTATAAGTTCGATAGTTG+GGG 0.561130 6_1:+27958575 Msa0881020:three_prime_UTR
GCTCGCTCATCTATTGTCCC+AGG 0.564121 6_1:-27953517 None:intergenic
CCACAGCGCTCAAAAGCTCA+AGG 0.565969 6_1:-27957480 None:intergenic
TGTCGGATCACTTATGGTCA+AGG 0.567674 6_1:-27954912 None:intergenic
GAAGCCGGCCTCTTGGTGCT+CGG 0.569076 6_1:+27958305 Msa0881020:three_prime_UTR
TTCAATAAAACCTTGTCCGG+TGG 0.569867 6_1:-27954163 None:intergenic
TCACCTGTAGCTTCAGCAGA+TGG 0.571305 6_1:+27958093 Msa0881020:CDS
TATCAGTTTACCACCGGACA+AGG 0.571953 6_1:+27954153 Msa0881020:CDS
AATAACAAAGTGAAGAAAGC+CGG 0.571985 6_1:+27957020 Msa0881020:CDS
GAGCGCTGTGGAGCCAAGGG+TGG 0.578582 6_1:+27957492 Msa0881020:CDS
CAATAATAAGAAAAGGGAGG+AGG 0.578689 6_1:+27958457 Msa0881020:three_prime_UTR
CCTTTGCTGAATTGAGGCCA+AGG 0.582536 6_1:-27953591 None:intergenic
ACTGCCAGCTTAAGGAGAGT+TGG 0.583296 6_1:-27958184 None:intergenic
ATCAGTCATCATCTCAGCGA+AGG 0.585154 6_1:-27955550 None:intergenic
CAGGATAAGAATCTTTCCAA+CGG 0.585427 6_1:+27957448 Msa0881020:intron
AGGAATGAAAACCACACCCT+TGG 0.586456 6_1:+27953574 Msa0881020:CDS
CGAGCTGCAGCAAAAGGTGG+CGG 0.589232 6_1:+27953179 Msa0881020:CDS
TCAAACAATGCATTTGTAGA+CGG 0.593212 6_1:-27953347 None:intergenic
CTGGCAGTGTGAATCTCTGT+CGG 0.593696 6_1:+27958199 Msa0881020:three_prime_UTR
GGAGCTTATCAGTTTACCAC+CGG 0.595643 6_1:+27954147 Msa0881020:CDS
ATAGAATAGAAAGACGAAGC+CGG 0.597501 6_1:+27958290 Msa0881020:three_prime_UTR
GTATCTGAAAGAACTCAATC+GGG 0.598331 6_1:+27952360 Msa0881020:CDS
TGATGCTGATATACTAAACT+GGG 0.599993 6_1:+27956995 Msa0881020:CDS
CTGGTAACGATATTGTTCAA+GGG 0.602831 6_1:+27955935 Msa0881020:CDS
AAAAGAGCTCACCCTAAGGA+AGG 0.609760 6_1:-27952517 None:intergenic
CTTTGCTGAATTGAGGCCAA+GGG 0.610450 6_1:-27953590 None:intergenic
ACTCGAGCTGCAGCAAAAGG+TGG 0.613169 6_1:+27953176 Msa0881020:CDS
CTGGAGTTTAGTTACTAAAG+GGG 0.614933 6_1:+27957519 Msa0881020:CDS
GGGATCTTAATCCATGGGAG+AGG 0.619723 6_1:+27953554 Msa0881020:CDS
AGTGGTTAATATTGGTACAC+AGG 0.622990 6_1:+27953627 Msa0881020:CDS
AAAACGGGATCTTAATCCAT+GGG 0.623930 6_1:+27953549 Msa0881020:CDS
TGAAACAGATTTAGTCAATG+AGG 0.625097 6_1:+27958122 Msa0881020:CDS
TGAAGCAAACAACAAAATGA+GGG 0.628518 6_1:+27958247 Msa0881020:three_prime_UTR
CTCCAAAGGACATAGTTGAA+GGG 0.634932 6_1:+27954993 Msa0881020:CDS
CCTTGGCCTCAATTCAGCAA+AGG 0.637065 6_1:+27953591 Msa0881020:CDS
TGTTGAAAGTGAGAAAATTG+GGG 0.637993 6_1:-27951889 None:intergenic
CAAGAGATACCTCACTCCAA+AGG 0.644053 6_1:+27954979 Msa0881020:CDS
AACTTGAGATCACACTCCCA+AGG 0.664816 6_1:+27956960 Msa0881020:CDS
TCCCAATAATAAGAAAAGGG+AGG 0.676179 6_1:+27958454 Msa0881020:three_prime_UTR
TTTGGTGATAGGACCCGCGA+AGG 0.678311 6_1:-27951849 None:intergenic
TGAAAGTGAGAAAATTGGGG+TGG 0.678859 6_1:-27951886 None:intergenic
GTTACCTGAGGACATAATCG+AGG 0.704443 6_1:+27957762 Msa0881020:CDS
AAAGGCTATTGGGTGCACAG+TGG 0.746180 6_1:+27953609 Msa0881020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATACATTAAGAATATTT+TGG + chr6_1:27955113-27955132 Msa0881020:intron 10.0%
!!! TTATACATTAAGAATATTTT+GGG + chr6_1:27955114-27955133 Msa0881020:intron 10.0%
!!! TTAATTTATTTTCTTTTTTC+AGG + chr6_1:27957429-27957448 Msa0881020:intron 10.0%
!! TTATTTGTAAGTAACTTTAT+AGG + chr6_1:27953086-27953105 Msa0881020:intron 15.0%
!!! TATACATTAAGAATATTTTG+GGG + chr6_1:27955115-27955134 Msa0881020:intron 15.0%
!! TAAATAAAATGAACCAATAA+GGG - chr6_1:27955394-27955413 None:intergenic 15.0%
!!! TTCATTTTATTTACATTTAC+TGG + chr6_1:27955401-27955420 Msa0881020:intron 15.0%
!!! TCATTTTATTTACATTTACT+GGG + chr6_1:27955402-27955421 Msa0881020:intron 15.0%
!!! TTTTCAGATTTATGATAAAT+CGG + chr6_1:27955991-27956010 Msa0881020:intron 15.0%
!!! ATTCATAATATAAACTGTTT+TGG - chr6_1:27957146-27957165 None:intergenic 15.0%
!! AATAAATCTAAAAAATGTGT+TGG - chr6_1:27957411-27957430 None:intergenic 15.0%
!!! TTAGAATTTTTTTGTACTTT+AGG + chr6_1:27958398-27958417 Msa0881020:three_prime_UTR 15.0%
!!! TTGTTGATTTTTGTGTAAAA+AGG - chr6_1:27951931-27951950 None:intergenic 20.0%
!! TTGAATAACAACAAATTGAA+TGG - chr6_1:27952032-27952051 None:intergenic 20.0%
!! TGTTCATTTGAAAAATAGAA+GGG + chr6_1:27952832-27952851 Msa0881020:intron 20.0%
!!! CAAAAGTATACTTTCAAATT+AGG - chr6_1:27953026-27953045 None:intergenic 20.0%
!! AATAGAATTGATCTTATGTT+TGG - chr6_1:27953414-27953433 None:intergenic 20.0%
!! ATGAATAATAGAAATCAGAA+TGG - chr6_1:27953863-27953882 None:intergenic 20.0%
!! TTCTGATTTCTATTATTCAT+TGG + chr6_1:27953863-27953882 Msa0881020:intron 20.0%
!! ATCATGTAAATATATAATGC+TGG + chr6_1:27954338-27954357 Msa0881020:intron 20.0%
!! TCATGTAAATATATAATGCT+GGG + chr6_1:27954339-27954358 Msa0881020:intron 20.0%
!! TATATAATATAACATAGCTC+CGG + chr6_1:27954400-27954419 Msa0881020:intron 20.0%
!! TATACTAAGATATAATGAAC+CGG - chr6_1:27955262-27955281 None:intergenic 20.0%
!! GTAAATAAAATGAACCAATA+AGG - chr6_1:27955395-27955414 None:intergenic 20.0%
!! GGTTCAATGAAAAAATTAAA+AGG - chr6_1:27955718-27955737 None:intergenic 20.0%
!!! TTATTTCTTTTTTCACAGAT+GGG + chr6_1:27955759-27955778 Msa0881020:intron 20.0%
!! ATGAAATAACAAGAACATAT+CGG - chr6_1:27956113-27956132 None:intergenic 20.0%
!!! CATTAAATTTTGAAACTGAT+GGG + chr6_1:27956582-27956601 Msa0881020:intron 20.0%
!!! AAAGCTTTAGAATAAAGAAA+AGG + chr6_1:27957327-27957346 Msa0881020:intron 20.0%
!! TGTTATAAAATCAACTTCAA+TGG + chr6_1:27957875-27957894 Msa0881020:intron 20.0%
!! AATAAAGTATGGTATAATCT+AGG - chr6_1:27957930-27957949 None:intergenic 20.0%
!! ATTATCATCAATAGCTAAAT+CGG - chr6_1:27958151-27958170 None:intergenic 20.0%
!! TTATTCCCAATAATAAGAAA+AGG + chr6_1:27958450-27958469 Msa0881020:three_prime_UTR 20.0%
!! TATTCCCAATAATAAGAAAA+GGG + chr6_1:27958451-27958470 Msa0881020:three_prime_UTR 20.0%
! TTGTTGAAAGTGAGAAAATT+GGG - chr6_1:27951893-27951912 None:intergenic 25.0%
! ATTGTTGAAAGTGAGAAAAT+TGG - chr6_1:27951894-27951913 None:intergenic 25.0%
! AACAAAGAAAAACAACACAT+TGG - chr6_1:27952067-27952086 None:intergenic 25.0%
!!! AATGTGTTGTTTTTCTTTGT+TGG + chr6_1:27952066-27952085 Msa0881020:intron 25.0%
!!! ATGTGTTGTTTTTCTTTGTT+GGG + chr6_1:27952067-27952086 Msa0881020:intron 25.0%
! CAATGATCAAGAAATCAAAA+TGG - chr6_1:27952281-27952300 None:intergenic 25.0%
! TAGAAGAAATAGTACGATAA+TGG + chr6_1:27952599-27952618 Msa0881020:intron 25.0%
!!! GTCATATGCTATTTTGATTT+AGG + chr6_1:27952668-27952687 Msa0881020:intron 25.0%
!!! TCTGTTTCTATATAATAGAG+GGG - chr6_1:27952737-27952756 None:intergenic 25.0%
!!! CTCTGTTTCTATATAATAGA+GGG - chr6_1:27952738-27952757 None:intergenic 25.0%
! CTCTATTATATAGAAACAGA+GGG + chr6_1:27952737-27952756 Msa0881020:intron 25.0%
! GTTTCATTTAAGCAAAACTA+AGG + chr6_1:27952769-27952788 Msa0881020:intron 25.0%
!! ATTTTTCCAACAAATAAGAG+TGG + chr6_1:27952805-27952824 Msa0881020:intron 25.0%
! GTGTTCATTTGAAAAATAGA+AGG + chr6_1:27952831-27952850 Msa0881020:intron 25.0%
! GTTCATTTGAAAAATAGAAG+GGG + chr6_1:27952833-27952852 Msa0881020:intron 25.0%
!!! AAGTTCTTCTTCATTTTTGA+AGG + chr6_1:27953208-27953227 Msa0881020:CDS 25.0%
! TTTAAGTCTGTCAAAATTCA+GGG - chr6_1:27953703-27953722 None:intergenic 25.0%
!!! TGTTTATTTGTAGCCTTATT+TGG + chr6_1:27953750-27953769 Msa0881020:intron 25.0%
! TCTGATTTCACAAATAATCA+AGG + chr6_1:27953780-27953799 Msa0881020:CDS 25.0%
! ATGAAAAGGAAAGAATATCA+CGG - chr6_1:27954065-27954084 None:intergenic 25.0%
!! TTTTGTCATAACATATGAAG+AGG - chr6_1:27954113-27954132 None:intergenic 25.0%
! CTTCATATGTTATGACAAAA+TGG + chr6_1:27954113-27954132 Msa0881020:intron 25.0%
! AAATTTCTCATCTGATGTAA+AGG + chr6_1:27954234-27954253 Msa0881020:CDS 25.0%
! TTTAGTAAATCAGAACAACA+GGG - chr6_1:27954608-27954627 None:intergenic 25.0%
! ATTTAGTAAATCAGAACAAC+AGG - chr6_1:27954609-27954628 None:intergenic 25.0%
!! ATTGAATACTTTCTTTTTGC+AGG + chr6_1:27954829-27954848 Msa0881020:intron 25.0%
!!! TTCCTTTGCCTTTTTTTTAT+TGG + chr6_1:27955162-27955181 Msa0881020:intron 25.0%
!!! TCCTTTGCCTTTTTTTTATT+GGG + chr6_1:27955163-27955182 Msa0881020:intron 25.0%
!! ACCTTTTCCCAATAAAAAAA+AGG - chr6_1:27955173-27955192 None:intergenic 25.0%
!!! GCTCCTCTAATTTTTTTTAT+TGG + chr6_1:27955195-27955214 Msa0881020:intron 25.0%
! AGGCCAATAAAAAAAATTAG+AGG - chr6_1:27955201-27955220 None:intergenic 25.0%
! TCCAAAAAAAGATACTCAAA+AGG - chr6_1:27955221-27955240 None:intergenic 25.0%
!!! AGTATCTTTTTTTGGATGAA+GGG + chr6_1:27955225-27955244 Msa0881020:intron 25.0%
!! TTTCTCTTTAGGAAAAAAAG+AGG + chr6_1:27955329-27955348 Msa0881020:intron 25.0%
!! TTATGTCAATAATGTTTTCG+AGG + chr6_1:27955638-27955657 Msa0881020:CDS 25.0%
! CATCTGTGAAAAAAGAAATA+AGG - chr6_1:27955760-27955779 None:intergenic 25.0%
!!! CTTATTTCTTTTTTCACAGA+TGG + chr6_1:27955758-27955777 Msa0881020:intron 25.0%
! TCTATTAGAAGTTCTTGATA+AGG + chr6_1:27955783-27955802 Msa0881020:CDS 25.0%
! TGCAACCAAGTTATAAAAAT+TGG + chr6_1:27955880-27955899 Msa0881020:CDS 25.0%
! GCAACCAAGTTATAAAAATT+GGG + chr6_1:27955881-27955900 Msa0881020:CDS 25.0%
! CATTTACTAAGGAAAAGTTT+AGG - chr6_1:27955912-27955931 None:intergenic 25.0%
! TTATGATAAATCGGTATTGT+TGG + chr6_1:27956000-27956019 Msa0881020:intron 25.0%
! TATAACTGAAGATAACCAAT+AGG + chr6_1:27956086-27956105 Msa0881020:intron 25.0%
! TGAAATAACAAGAACATATC+GGG - chr6_1:27956112-27956131 None:intergenic 25.0%
!!! TGTTCTTGTTATTTCATACA+AGG + chr6_1:27956116-27956135 Msa0881020:intron 25.0%
!! TATATTAGACCTTATTTCCA+TGG + chr6_1:27956175-27956194 Msa0881020:intron 25.0%
! CTATAACTAAGAACAAAAAG+AGG - chr6_1:27956438-27956457 None:intergenic 25.0%
! GTTAAAAAAACTGTCTTTCT+AGG + chr6_1:27956463-27956482 Msa0881020:intron 25.0%
! ATCTATAATGTTACAGAAGA+AGG - chr6_1:27956508-27956527 None:intergenic 25.0%
! TTCTTCTGTAACATTATAGA+TGG + chr6_1:27956507-27956526 Msa0881020:intron 25.0%
! TCTTCTGTAACATTATAGAT+GGG + chr6_1:27956508-27956527 Msa0881020:intron 25.0%
!!! GCATTAAATTTTGAAACTGA+TGG + chr6_1:27956581-27956600 Msa0881020:intron 25.0%
! GAAATATTATAACCGAAGAA+TGG + chr6_1:27956610-27956629 Msa0881020:intron 25.0%
! TGGTTAAAAACGATGATAAA+GGG - chr6_1:27956759-27956778 None:intergenic 25.0%
! ATGGTTAAAAACGATGATAA+AGG - chr6_1:27956760-27956779 None:intergenic 25.0%
! AATATAAGTATACTCAGAAC+TGG - chr6_1:27957093-27957112 None:intergenic 25.0%
! GTATGCATATTATCTTAAGA+CGG + chr6_1:27957118-27957137 Msa0881020:intron 25.0%
! GCATTTGCATATATCATATT+TGG + chr6_1:27957197-27957216 Msa0881020:intron 25.0%
! ACTGTTCAATGTTTAACAAA+GGG + chr6_1:27957350-27957369 Msa0881020:intron 25.0%
!!! GCTGAGAAATTTTATTTTTG+TGG + chr6_1:27957952-27957971 Msa0881020:intron 25.0%
!! GAAAAAAACGATTTGGTGAT+AGG - chr6_1:27951863-27951882 None:intergenic 30.0%
TGTTGAAAGTGAGAAAATTG+GGG - chr6_1:27951892-27951911 None:intergenic 30.0%
TTCATCAATCTTAACCCATA+AGG + chr6_1:27951967-27951986 Msa0881020:five_prime_UTR 30.0%
AAGCAATTAACGTACCTTAT+GGG - chr6_1:27951984-27952003 None:intergenic 30.0%
CATGTTGAAAGTTGAAACTT+TGG - chr6_1:27952131-27952150 None:intergenic 30.0%
!!! TTTCAACATGTCTAGTTTTG+TGG + chr6_1:27952141-27952160 Msa0881020:exon 30.0%
!!! TTCAACATGTCTAGTTTTGT+GGG + chr6_1:27952142-27952161 Msa0881020:exon 30.0%
TGATTTCTTGATCATTGATG+AGG + chr6_1:27952284-27952303 Msa0881020:intron 30.0%
TGTATCTGAAAGAACTCAAT+CGG + chr6_1:27952359-27952378 Msa0881020:CDS 30.0%
TTCAATTTCTTGAAAATGGG+AGG - chr6_1:27952408-27952427 None:intergenic 30.0%
!! TCCCATTTTCAAGAAATTGA+AGG + chr6_1:27952407-27952426 Msa0881020:CDS 30.0%
GCCTTCAATTTCTTGAAAAT+GGG - chr6_1:27952411-27952430 None:intergenic 30.0%
AGCCTTCAATTTCTTGAAAA+TGG - chr6_1:27952412-27952431 None:intergenic 30.0%
! TTTTACTGAGGATGAGATTA+AGG + chr6_1:27952443-27952462 Msa0881020:CDS 30.0%
!! CCTCTGTTTCTATATAATAG+AGG - chr6_1:27952739-27952758 None:intergenic 30.0%
CCTCTATTATATAGAAACAG+AGG + chr6_1:27952736-27952755 Msa0881020:intron 30.0%
ATTTAAGCAAAACTAAGGTG+AGG + chr6_1:27952774-27952793 Msa0881020:intron 30.0%
TTTAAGCAAAACTAAGGTGA+GGG + chr6_1:27952775-27952794 Msa0881020:intron 30.0%
!! TTTTGATTCAAATGTCTGTG+TGG + chr6_1:27953048-27953067 Msa0881020:intron 30.0%
TTTGATTCAAATGTCTGTGT+GGG + chr6_1:27953049-27953068 Msa0881020:intron 30.0%
ATGTCAATAAATAAGCTACC+AGG - chr6_1:27953128-27953147 None:intergenic 30.0%
GCTTATTTATTGACATTGAG+TGG + chr6_1:27953132-27953151 Msa0881020:intron 30.0%
ATTTATTGACATTGAGTGGT+AGG + chr6_1:27953136-27953155 Msa0881020:intron 30.0%
TGCAATTAATGAATCTGAGA+AGG + chr6_1:27953253-27953272 Msa0881020:CDS 30.0%
TCAAACAATGCATTTGTAGA+CGG - chr6_1:27953350-27953369 None:intergenic 30.0%
TTGTTTGATCTTGCTAAAGA+TGG + chr6_1:27953362-27953381 Msa0881020:CDS 30.0%
! TTATTAATGTTGCTGTTCCT+GGG + chr6_1:27953500-27953519 Msa0881020:CDS 30.0%
TAATATTGGTACACAGGATA+TGG + chr6_1:27953633-27953652 Msa0881020:CDS 30.0%
TTAAGTCTGTCAAAATTCAG+GGG - chr6_1:27953702-27953721 None:intergenic 30.0%
GTTTAAGTCTGTCAAAATTC+AGG - chr6_1:27953704-27953723 None:intergenic 30.0%
TCATCTTATGCAAGTGAAAA+TGG - chr6_1:27953823-27953842 None:intergenic 30.0%
! ATTTTCACTTGCATAAGATG+AGG + chr6_1:27953822-27953841 Msa0881020:intron 30.0%
! TTTTCACTTGCATAAGATGA+GGG + chr6_1:27953823-27953842 Msa0881020:intron 30.0%
TGGAAAGACTTCTTAACTTA+TGG + chr6_1:27953883-27953902 Msa0881020:intron 30.0%
! TTGTCTGTCTTTTCATTCTT+TGG + chr6_1:27953916-27953935 Msa0881020:intron 30.0%
ATATGTTATGACAAAATGGC+AGG + chr6_1:27954117-27954136 Msa0881020:intron 30.0%
CATTTCAATAAAACCTTGTC+CGG - chr6_1:27954169-27954188 None:intergenic 30.0%
TGAACTGTAGAATGAAATTG+AGG + chr6_1:27954537-27954556 Msa0881020:intron 30.0%
TTAGTAAATCAGAACAACAG+GGG - chr6_1:27954607-27954626 None:intergenic 30.0%
AGATGTAAACAGATACAACA+TGG + chr6_1:27954779-27954798 Msa0881020:intron 30.0%
! AATACTTTCTTTTTGCAGGA+TGG + chr6_1:27954833-27954852 Msa0881020:intron 30.0%
ACAAATGCAAGATTAAGGTT+AGG - chr6_1:27955022-27955041 None:intergenic 30.0%
TCCCAATAAAAAAAAGGCAA+AGG - chr6_1:27955167-27955186 None:intergenic 30.0%
!!! GCCTTTTTTTTATTGGGAAA+AGG + chr6_1:27955169-27955188 Msa0881020:intron 30.0%
!! GCCTTTTGAGTATCTTTTTT+TGG + chr6_1:27955217-27955236 Msa0881020:intron 30.0%
!!! GAGTATCTTTTTTTGGATGA+AGG + chr6_1:27955224-27955243 Msa0881020:intron 30.0%
TAGACTAGAACTTTCTCTTT+AGG + chr6_1:27955318-27955337 Msa0881020:intron 30.0%
! TCTTTAGGAAAAAAAGAGGA+CGG + chr6_1:27955333-27955352 Msa0881020:intron 30.0%
ATGGCATACATATCACATAA+TGG + chr6_1:27955364-27955383 Msa0881020:intron 30.0%
TGGCATACATATCACATAAT+GGG + chr6_1:27955365-27955384 Msa0881020:intron 30.0%
TAGAGTTAGGAAATGTATAG+AGG + chr6_1:27955452-27955471 Msa0881020:intron 30.0%
! AAATTAAAAGGCAGAAGTAC+AGG - chr6_1:27955706-27955725 None:intergenic 30.0%
! TTTTTCATTGAACCAACTAC+TGG + chr6_1:27955724-27955743 Msa0881020:intron 30.0%
! CCTTCCCAATTTTTATAACT+TGG - chr6_1:27955888-27955907 None:intergenic 30.0%
CCAAGTTATAAAAATTGGGA+AGG + chr6_1:27955885-27955904 Msa0881020:CDS 30.0%
! TTTTCCTTAGTAAATGTTGC+TGG + chr6_1:27955916-27955935 Msa0881020:CDS 30.0%
! ATAAAATTGCAGTTTCGAGT+TGG - chr6_1:27956324-27956343 None:intergenic 30.0%
ATGAGAAGTTACTGAAAAGT+AGG + chr6_1:27956357-27956376 Msa0881020:intron 30.0%
ACTAAGAACAAAAAGAGGAA+AGG - chr6_1:27956433-27956452 None:intergenic 30.0%
ATCAGTAATCTCTTTACCTT+GGG - chr6_1:27956979-27956998 None:intergenic 30.0%
TGATGCTGATATACTAAACT+GGG + chr6_1:27956995-27957014 Msa0881020:CDS 30.0%
AATAACAAAGTGAAGAAAGC+CGG + chr6_1:27957020-27957039 Msa0881020:CDS 30.0%
GACTGTTCAATGTTTAACAA+AGG + chr6_1:27957349-27957368 Msa0881020:intron 30.0%
CTGTTCAATGTTTAACAAAG+GGG + chr6_1:27957351-27957370 Msa0881020:intron 30.0%
AACTGGAGTTTAGTTACTAA+AGG + chr6_1:27957517-27957536 Msa0881020:CDS 30.0%
ACTGGAGTTTAGTTACTAAA+GGG + chr6_1:27957518-27957537 Msa0881020:CDS 30.0%
! AGTTAGCTTCAATTTCTTGA+AGG - chr6_1:27957570-27957589 None:intergenic 30.0%
TCCATGAAAAATCAACTTCA+TGG + chr6_1:27957833-27957852 Msa0881020:intron 30.0%
!! ACCATGAAGTTGATTTTTCA+TGG - chr6_1:27957837-27957856 None:intergenic 30.0%
!!! CTTCATGGTTTTGTTAAGTT+TGG + chr6_1:27957848-27957867 Msa0881020:intron 30.0%
! ATTTTGCATTTAACCTTGAC+AGG + chr6_1:27957984-27958003 Msa0881020:intron 30.0%
ATAAAGTGAGTATCATCTTC+TGG - chr6_1:27958014-27958033 None:intergenic 30.0%
TGAAACAGATTTAGTCAATG+AGG + chr6_1:27958122-27958141 Msa0881020:CDS 30.0%
ATTAAAGGATGTCTGTCAAA+AGG + chr6_1:27958223-27958242 Msa0881020:three_prime_UTR 30.0%
TTGAAGCAAACAACAAAATG+AGG + chr6_1:27958246-27958265 Msa0881020:three_prime_UTR 30.0%
TGAAGCAAACAACAAAATGA+GGG + chr6_1:27958247-27958266 Msa0881020:three_prime_UTR 30.0%
! TCCTCCCTTTTCTTATTATT+GGG - chr6_1:27958458-27958477 None:intergenic 30.0%
! AGAAAAACCACACTCTAAAA+TGG - chr6_1:27958537-27958556 None:intergenic 30.0%
TCAAGTATAAGTTCGATAGT+TGG + chr6_1:27958573-27958592 Msa0881020:three_prime_UTR 30.0%
GTGGAGAGAAAAAAACGATT+TGG - chr6_1:27951870-27951889 None:intergenic 35.0%
GAAGCAATTAACGTACCTTA+TGG - chr6_1:27951985-27952004 None:intergenic 35.0%
GAAAGTTGAAACTTTGGTTG+AGG - chr6_1:27952125-27952144 None:intergenic 35.0%
!! GTGTTCTTGTTTCTGATCAA+TGG + chr6_1:27952164-27952183 Msa0881020:CDS 35.0%
! TTAATTCGACTTGAGTGAAC+TGG - chr6_1:27952198-27952217 None:intergenic 35.0%
GTATCTGAAAGAACTCAATC+GGG + chr6_1:27952360-27952379 Msa0881020:CDS 35.0%
! CAAGAAATTGAAGGCTTTTG+CGG + chr6_1:27952416-27952435 Msa0881020:CDS 35.0%
! TTTTGCGGAGTTTTTTACTG+AGG + chr6_1:27952431-27952450 Msa0881020:CDS 35.0%
!! TTGATTTTGAGTCCTTCCTT+AGG + chr6_1:27952505-27952524 Msa0881020:CDS 35.0%
!! TGATTTTGAGTCCTTCCTTA+GGG + chr6_1:27952506-27952525 Msa0881020:CDS 35.0%
! AAAAGCGCGTAAACGAAAAA+GGG - chr6_1:27952557-27952576 None:intergenic 35.0%
! AAAAAGCGCGTAAACGAAAA+AGG - chr6_1:27952558-27952577 None:intergenic 35.0%
TGTCATCTAAGCATACATCA+GGG - chr6_1:27952642-27952661 None:intergenic 35.0%
TATATAATAGAGGGGAGATG+CGG - chr6_1:27952729-27952748 None:intergenic 35.0%
TTAAGCAAAACTAAGGTGAG+GGG + chr6_1:27952776-27952795 Msa0881020:intron 35.0%
! CACTAACCACTCTTATTTGT+TGG - chr6_1:27952814-27952833 None:intergenic 35.0%
TTTGAAAAATAGAAGGGGTG+TGG + chr6_1:27952838-27952857 Msa0881020:intron 35.0%
! TTGAAAAATAGAAGGGGTGT+GGG + chr6_1:27952839-27952858 Msa0881020:intron 35.0%
ATTTGCACTTATCTACTACG+AGG - chr6_1:27952880-27952899 None:intergenic 35.0%
GGTATTATCTATACTGAACC+TGG + chr6_1:27953107-27953126 Msa0881020:intron 35.0%
! CTTATTAATGTTGCTGTTCC+TGG + chr6_1:27953499-27953518 Msa0881020:CDS 35.0%
! AAGATCCCGTTTTGTGTTAA+TGG - chr6_1:27953542-27953561 None:intergenic 35.0%
AAAACGGGATCTTAATCCAT+GGG + chr6_1:27953549-27953568 Msa0881020:CDS 35.0%
TCAATTCAGCAAAGGCTATT+GGG + chr6_1:27953599-27953618 Msa0881020:CDS 35.0%
AGTGGTTAATATTGGTACAC+AGG + chr6_1:27953627-27953646 Msa0881020:CDS 35.0%
!! TTGTAGCCTTATTTGGTACT+TGG + chr6_1:27953757-27953776 Msa0881020:intron 35.0%
ATCAGACCAAGTACCAAATA+AGG - chr6_1:27953766-27953785 None:intergenic 35.0%
TATGCAAGTGAAAATGGAGT+AGG - chr6_1:27953817-27953836 None:intergenic 35.0%
! GAAGAAAACTCCTCAACTTT+TGG + chr6_1:27953974-27953993 Msa0881020:CDS 35.0%
!!! TCCTCAACTTTTGGAATTAG+TGG + chr6_1:27953983-27954002 Msa0881020:CDS 35.0%
TCCACTAATTCCAAAAGTTG+AGG - chr6_1:27953987-27954006 None:intergenic 35.0%
GGAATTAGTGGAAGATGATA+AGG + chr6_1:27953995-27954014 Msa0881020:CDS 35.0%
GGAAGATGATAAGGTGATAT+TGG + chr6_1:27954004-27954023 Msa0881020:intron 35.0%
!!! CGGACAAGGTTTTATTGAAA+TGG + chr6_1:27954167-27954186 Msa0881020:CDS 35.0%
AATTTCCACTTGAAGAAAGC+TGG + chr6_1:27954193-27954212 Msa0881020:CDS 35.0%
TTTGTGTATTCTACACACAC+CGG - chr6_1:27954422-27954441 None:intergenic 35.0%
CATGTTAAGAAAGCAAGTGA+TGG - chr6_1:27954447-27954466 None:intergenic 35.0%
CATCACTTGCTTTCTTAACA+TGG + chr6_1:27954445-27954464 Msa0881020:intron 35.0%
! TCTAAGACTCATAGTACTTC+AGG + chr6_1:27954494-27954513 Msa0881020:intron 35.0%
ACTCATAGTACTTCAGGATT+TGG + chr6_1:27954500-27954519 Msa0881020:intron 35.0%
ACTGTAGAATGAAATTGAGG+AGG + chr6_1:27954540-27954559 Msa0881020:intron 35.0%
CTAAATCAGTGAAGAAACTG+TGG + chr6_1:27954623-27954642 Msa0881020:intron 35.0%
AGGACAGCAGAAGATAAAAA+GGG - chr6_1:27954649-27954668 None:intergenic 35.0%
AAGGACAGCAGAAGATAAAA+AGG - chr6_1:27954650-27954669 None:intergenic 35.0%
AAAACTACTGAACACTGTCA+AGG - chr6_1:27954669-27954688 None:intergenic 35.0%
TTCAGTAATCAGCATGTTAC+AGG - chr6_1:27954718-27954737 None:intergenic 35.0%
CTGATTACTGAATCATTGTG+TGG + chr6_1:27954726-27954745 Msa0881020:intron 35.0%
ACCATATTTGCTCTTTCTGT+CGG - chr6_1:27954932-27954951 None:intergenic 35.0%
GTGCAACAAATGCAAGATTA+AGG - chr6_1:27955027-27955046 None:intergenic 35.0%
! TTGCACAAATTTTCCAGCAT+AGG + chr6_1:27955041-27955060 Msa0881020:CDS 35.0%
! CAAATTTTCCAGCATAGGTA+TGG + chr6_1:27955046-27955065 Msa0881020:intron 35.0%
AAAAGTAACCATACCTATGC+TGG - chr6_1:27955057-27955076 None:intergenic 35.0%
!!! GCATAGGTATGGTTACTTTT+AGG + chr6_1:27955057-27955076 Msa0881020:intron 35.0%
!!! TAGGTATGGTTACTTTTAGG+AGG + chr6_1:27955060-27955079 Msa0881020:intron 35.0%
! AAGAGAAAGTTCTAGTCTAG+TGG - chr6_1:27955317-27955336 None:intergenic 35.0%
! CTTTAGGAAAAAAAGAGGAC+GGG + chr6_1:27955334-27955353 Msa0881020:intron 35.0%
TTTAGGAAAAAAAGAGGACG+GGG + chr6_1:27955335-27955354 Msa0881020:intron 35.0%
TTTACTGGGAACAAGTATCT+AGG + chr6_1:27955416-27955435 Msa0881020:intron 35.0%
AGTAGTGCAGTTATAGAGTT+AGG + chr6_1:27955439-27955458 Msa0881020:intron 35.0%
GTTAGGAAATGTATAGAGGA+CGG + chr6_1:27955456-27955475 Msa0881020:intron 35.0%
ATTGTGGCTTTCATTTCTGT+AGG + chr6_1:27955496-27955515 Msa0881020:intron 35.0%
GCTTTCATTTCTGTAGGAAT+GGG + chr6_1:27955502-27955521 Msa0881020:intron 35.0%
!! TTTTCGAGGATGTCAGAAAT+GGG + chr6_1:27955652-27955671 Msa0881020:CDS 35.0%
! ATTGAACCAACTACTGGTTA+TGG + chr6_1:27955730-27955749 Msa0881020:intron 35.0%
! CTCCTATAAAGATGCCATTT+CGG + chr6_1:27955845-27955864 Msa0881020:CDS 35.0%
TTCCGAAATGGCATCTTTAT+AGG - chr6_1:27955850-27955869 None:intergenic 35.0%
GTTACCAGCAACATTTACTA+AGG - chr6_1:27955923-27955942 None:intergenic 35.0%
! CTGGTAACGATATTGTTCAA+GGG + chr6_1:27955935-27955954 Msa0881020:CDS 35.0%
TAGGCTCTTAATCCATTCTT+CGG - chr6_1:27956625-27956644 None:intergenic 35.0%
TCAGATCTTACCTCTCAAAT+AGG - chr6_1:27956644-27956663 None:intergenic 35.0%
ATCTGATTTACTCACAGACT+AGG + chr6_1:27956658-27956677 Msa0881020:intron 35.0%
! TTTACTCACAGACTAGGTTT+TGG + chr6_1:27956664-27956683 Msa0881020:intron 35.0%
! TGAGTTTTTGTGAAGCCTTA+AGG - chr6_1:27956701-27956720 None:intergenic 35.0%
! ATAAAGGGAGAGAAAGGTAT+AGG - chr6_1:27956744-27956763 None:intergenic 35.0%
!!! TTTGTCCAACAGCTTTTTTG+TGG + chr6_1:27956901-27956920 Msa0881020:intron 35.0%
!! GTTTTTCAGAAGTTGAAGCA+TGG - chr6_1:27956943-27956962 None:intergenic 35.0%
CATCAGTAATCTCTTTACCT+TGG - chr6_1:27956980-27956999 None:intergenic 35.0%
CTGATGCTGATATACTAAAC+TGG + chr6_1:27956994-27957013 Msa0881020:CDS 35.0%
! ATCTGAAATGGAGAGTTTCA+AGG + chr6_1:27957049-27957068 Msa0881020:CDS 35.0%
CAGGATAAGAATCTTTCCAA+CGG + chr6_1:27957448-27957467 Msa0881020:intron 35.0%
CTGGAGTTTAGTTACTAAAG+GGG + chr6_1:27957519-27957538 Msa0881020:CDS 35.0%
! AATGGAACATCCAAGTTTTC+TGG - chr6_1:27957737-27957756 None:intergenic 35.0%
TTTCTCAGCGCAATAAAGTA+TGG - chr6_1:27957941-27957960 None:intergenic 35.0%
! TGTTTTCTTCAGAATTCAGC+AGG - chr6_1:27958059-27958078 None:intergenic 35.0%
ATAGAATAGAAAGACGAAGC+CGG + chr6_1:27958290-27958309 Msa0881020:three_prime_UTR 35.0%
GAAGAACCACAGATAATAGA+AGG + chr6_1:27958358-27958377 Msa0881020:three_prime_UTR 35.0%
CAAGATCCTTCTATTATCTG+TGG - chr6_1:27958367-27958386 None:intergenic 35.0%
TCCCAATAATAAGAAAAGGG+AGG + chr6_1:27958454-27958473 Msa0881020:three_prime_UTR 35.0%
! CTCCTCCCTTTTCTTATTAT+TGG - chr6_1:27958459-27958478 None:intergenic 35.0%
CAATAATAAGAAAAGGGAGG+AGG + chr6_1:27958457-27958476 Msa0881020:three_prime_UTR 35.0%
! GAGTGTGGTTTTTCTATTTC+AGG + chr6_1:27958542-27958561 Msa0881020:three_prime_UTR 35.0%
!! TGGTTTTTCTATTTCAGGTC+TGG + chr6_1:27958547-27958566 Msa0881020:three_prime_UTR 35.0%
TGAAAGTGAGAAAATTGGGG+TGG - chr6_1:27951889-27951908 None:intergenic 40.0%
GGATGAGATTAAGGCTGTAT+TGG + chr6_1:27952452-27952471 Msa0881020:CDS 40.0%
GGAAGAGTCGTATCAGAATA+TGG + chr6_1:27952473-27952492 Msa0881020:CDS 40.0%
GTGTCATCTAAGCATACATC+AGG - chr6_1:27952643-27952662 None:intergenic 40.0%
GACATTCTTGTATGTTCTCG+TGG - chr6_1:27952904-27952923 None:intergenic 40.0%
CGCACACATTAACAGTTACT+TGG + chr6_1:27953286-27953305 Msa0881020:CDS 40.0%
GCATTTGTAGACGGATCAAT+TGG - chr6_1:27953341-27953360 None:intergenic 40.0%
AGCGAGCCATTAACACAAAA+CGG + chr6_1:27953533-27953552 Msa0881020:CDS 40.0%
CAAAACGGGATCTTAATCCA+TGG + chr6_1:27953548-27953567 Msa0881020:CDS 40.0%
CAATAGCCTTTGCTGAATTG+AGG - chr6_1:27953600-27953619 None:intergenic 40.0%
CTCAATTCAGCAAAGGCTAT+TGG + chr6_1:27953598-27953617 Msa0881020:CDS 40.0%
! CGCAGTTCTGACAAATGAAA+AGG - chr6_1:27954079-27954098 None:intergenic 40.0%
TATGACAAAATGGCAGGATG+TGG + chr6_1:27954123-27954142 Msa0881020:intron 40.0%
TTCAATAAAACCTTGTCCGG+TGG - chr6_1:27954166-27954185 None:intergenic 40.0%
CATAACCAGCTTTCTTCAAG+TGG - chr6_1:27954201-27954220 None:intergenic 40.0%
TCTCATCTGATGTAAAGGTG+AGG + chr6_1:27954239-27954258 Msa0881020:intron 40.0%
CTCATCTGATGTAAAGGTGA+GGG + chr6_1:27954240-27954259 Msa0881020:intron 40.0%
TATCGAACGTATGCTATGTG+AGG - chr6_1:27954760-27954779 None:intergenic 40.0%
!! CAACATGGTTCTAAATTGCG+CGG + chr6_1:27954794-27954813 Msa0881020:intron 40.0%
!! AACATGGTTCTAAATTGCGC+GGG + chr6_1:27954795-27954814 Msa0881020:intron 40.0%
! TTTCTTTTTGCAGGATGGAG+AGG + chr6_1:27954838-27954857 Msa0881020:intron 40.0%
TCTTTCTGTCGGATCACTTA+TGG - chr6_1:27954921-27954940 None:intergenic 40.0%
TCCGACAGAAAGAGCAAATA+TGG + chr6_1:27954928-27954947 Msa0881020:CDS 40.0%
AGCAAATATGGTTCTTGAGC+AGG + chr6_1:27954940-27954959 Msa0881020:CDS 40.0%
ACTCCAAAGGACATAGTTGA+AGG + chr6_1:27954992-27955011 Msa0881020:CDS 40.0%
CTCCAAAGGACATAGTTGAA+GGG + chr6_1:27954993-27955012 Msa0881020:CDS 40.0%
AAGGAAAAGTAGCAGGTTCT+TGG - chr6_1:27955148-27955167 None:intergenic 40.0%
AAAGGCAAAGGAAAAGTAGC+AGG - chr6_1:27955155-27955174 None:intergenic 40.0%
ATGAAGGGCTTCTTAGTATC+CGG + chr6_1:27955240-27955259 Msa0881020:intron 40.0%
!! ACATAATGGGTCACCCTTAT+TGG + chr6_1:27955378-27955397 Msa0881020:intron 40.0%
TCTATAGCTGATGGAGATTG+TGG + chr6_1:27955480-27955499 Msa0881020:intron 40.0%
GGCTTTCATTTCTGTAGGAA+TGG + chr6_1:27955501-27955520 Msa0881020:intron 40.0%
AAGAAAGATGCTTCAGACTC+TGG + chr6_1:27955592-27955611 Msa0881020:CDS 40.0%
!! GTTTTCGAGGATGTCAGAAA+TGG + chr6_1:27955651-27955670 Msa0881020:CDS 40.0%
AGGACAAATGTGAACAGGAA+AGG - chr6_1:27955686-27955705 None:intergenic 40.0%
AGTACAGGACAAATGTGAAC+AGG - chr6_1:27955691-27955710 None:intergenic 40.0%
GGAAATCCATAACCAGTAGT+TGG - chr6_1:27955739-27955758 None:intergenic 40.0%
GTTCTTGATAAGGTTTCACC+TGG + chr6_1:27955793-27955812 Msa0881020:CDS 40.0%
CGAAATGGCATCTTTATAGG+AGG - chr6_1:27955847-27955866 None:intergenic 40.0%
! AAAGATGCCATTTCGGAAAG+TGG + chr6_1:27955852-27955871 Msa0881020:CDS 40.0%
! GCTGGTAACGATATTGTTCA+AGG + chr6_1:27955934-27955953 Msa0881020:CDS 40.0%
GGGAATAAGAAGCTCTTACT+AGG + chr6_1:27955955-27955974 Msa0881020:CDS 40.0%
CAAAGCACACGCAAACATAT+CGG - chr6_1:27956031-27956050 None:intergenic 40.0%
CTACACTCACCATGGAAATA+AGG - chr6_1:27956187-27956206 None:intergenic 40.0%
TTCTACATCTACACTCACCA+TGG - chr6_1:27956195-27956214 None:intergenic 40.0%
TTTCAAATCGAAACACCGCA+TGG + chr6_1:27956295-27956314 Msa0881020:intron 40.0%
AGGAACTGTGTGTCTGTATT+AGG + chr6_1:27956377-27956396 Msa0881020:intron 40.0%
TGTGACGAAGTTCTGTTGAT+TGG + chr6_1:27956535-27956554 Msa0881020:intron 40.0%
GGATTAAGAGCCTATTTGAG+AGG + chr6_1:27956631-27956650 Msa0881020:intron 40.0%
! TTTTGTGAAGCCTTAAGGCA+GGG - chr6_1:27956696-27956715 None:intergenic 40.0%
! TTTTTGTGAAGCCTTAAGGC+AGG - chr6_1:27956697-27956716 None:intergenic 40.0%
! GGAGAGAAAGGTATAGGATA+GGG - chr6_1:27956738-27956757 None:intergenic 40.0%
ACGATGATAAAGGGAGAGAA+AGG - chr6_1:27956750-27956769 None:intergenic 40.0%
TAGATAACGCATGGGAAACA+GGG - chr6_1:27956847-27956866 None:intergenic 40.0%
TCCTATGCTAGATAACGCAT+GGG - chr6_1:27956855-27956874 None:intergenic 40.0%
CTCCATTTCAGATGTTCTTC+CGG - chr6_1:27957042-27957061 None:intergenic 40.0%
CTCAAGGAAGAAAATTCCGT+TGG - chr6_1:27957467-27957486 None:intergenic 40.0%
TTAGTTACTAAAGGGGAGAC+TGG + chr6_1:27957526-27957545 Msa0881020:CDS 40.0%
GCTTCAATTTCTTGAAGGTG+TGG - chr6_1:27957565-27957584 None:intergenic 40.0%
ATCAGTGTTGCCAGAAAACT+TGG + chr6_1:27957724-27957743 Msa0881020:CDS 40.0%
! TTCCATTTTCCTGTTACCTG+AGG + chr6_1:27957750-27957769 Msa0881020:CDS 40.0%
TATCTGCTAGCATCATGTAC+TGG + chr6_1:27958031-27958050 Msa0881020:CDS 40.0%
TGAATCTCTGTCGGCATTAA+AGG + chr6_1:27958208-27958227 Msa0881020:three_prime_UTR 40.0%
AGCACGAATTGGAGTAATCT+TGG - chr6_1:27958508-27958527 None:intergenic 40.0%
!!! TTGCACTCCATTTTAGAGTG+TGG + chr6_1:27958527-27958546 Msa0881020:three_prime_UTR 40.0%
CTCAATTTCCTTCTCCTTCG+CGG + chr6_1:27951835-27951854 Msa0881020:five_prime_UTR 45.0%
TCAATTTCCTTCTCCTTCGC+GGG + chr6_1:27951836-27951855 Msa0881020:five_prime_UTR 45.0%
AAAAGAGCTCACCCTAAGGA+AGG - chr6_1:27952520-27952539 None:intergenic 45.0%
CGAAAAAAGAGCTCACCCTA+AGG - chr6_1:27952524-27952543 None:intergenic 45.0%
!!! AAGGGGTGTGGGTGTTATTT+TGG + chr6_1:27952850-27952869 Msa0881020:intron 45.0%
CTAAAGATGGAGTCCTGCTT+TGG + chr6_1:27953375-27953394 Msa0881020:CDS 45.0%
CGCTGATCATTTACCAAAGC+AGG - chr6_1:27953391-27953410 None:intergenic 45.0%
GCGAGCCATTAACACAAAAC+GGG + chr6_1:27953534-27953553 Msa0881020:CDS 45.0%
! TGGTTTTCATTCCTCTCCCA+TGG - chr6_1:27953568-27953587 None:intergenic 45.0%
AGGAATGAAAACCACACCCT+TGG + chr6_1:27953574-27953593 Msa0881020:CDS 45.0%
CTTTGCTGAATTGAGGCCAA+GGG - chr6_1:27953593-27953612 None:intergenic 45.0%
GGGTGCACAGTGGTTAATAT+TGG + chr6_1:27953619-27953638 Msa0881020:CDS 45.0%
GGTACACAGGATATGGTTGA+AGG + chr6_1:27953640-27953659 Msa0881020:CDS 45.0%
GGAGCTTATCAGTTTACCAC+CGG + chr6_1:27954147-27954166 Msa0881020:CDS 45.0%
TATCAGTTTACCACCGGACA+AGG + chr6_1:27954153-27954172 Msa0881020:CDS 45.0%
TCTACAGTTCATCGCACTAG+AGG - chr6_1:27954528-27954547 None:intergenic 45.0%
CACTTATGGTCAAGGCAGAT+GGG - chr6_1:27954907-27954926 None:intergenic 45.0%
TCACTTATGGTCAAGGCAGA+TGG - chr6_1:27954908-27954927 None:intergenic 45.0%
TGTCGGATCACTTATGGTCA+AGG - chr6_1:27954915-27954934 None:intergenic 45.0%
CAAGAGATACCTCACTCCAA+AGG + chr6_1:27954979-27954998 Msa0881020:CDS 45.0%
!! CAACTATGTCCTTTGGAGTG+AGG - chr6_1:27954991-27955010 None:intergenic 45.0%
GACCCTTCAACTATGTCCTT+TGG - chr6_1:27954998-27955017 None:intergenic 45.0%
ATCAGTCATCATCTCAGCGA+AGG - chr6_1:27955553-27955572 None:intergenic 45.0%
! CTGATGATGCACAGACATCT+CGG + chr6_1:27955568-27955587 Msa0881020:CDS 45.0%
! TGATGATGCACAGACATCTC+GGG + chr6_1:27955569-27955588 Msa0881020:CDS 45.0%
AGACTCTGGATCAACAGTCT+TGG + chr6_1:27955606-27955625 Msa0881020:CDS 45.0%
CAGTTCTCCACTTTCCGAAA+TGG - chr6_1:27955862-27955881 None:intergenic 45.0%
CAAGAACATATCGGGCCTAT+TGG - chr6_1:27956104-27956123 None:intergenic 45.0%
!! GTTTCGAGTTGGTTTCCATG+CGG - chr6_1:27956313-27956332 None:intergenic 45.0%
CTGTATTAGGCGACTCTTGA+TGG + chr6_1:27956390-27956409 Msa0881020:intron 45.0%
! GGGAGAGAAAGGTATAGGAT+AGG - chr6_1:27956739-27956758 None:intergenic 45.0%
AGATAACGCATGGGAAACAG+GGG - chr6_1:27956846-27956865 None:intergenic 45.0%
CTAGATAACGCATGGGAAAC+AGG - chr6_1:27956848-27956867 None:intergenic 45.0%
TCCCATGCGTTATCTAGCAT+AGG + chr6_1:27956851-27956870 Msa0881020:intron 45.0%
CTCCTATGCTAGATAACGCA+TGG - chr6_1:27956856-27956875 None:intergenic 45.0%
!! CTAGCATAGGAGTGTCTAAC+AGG + chr6_1:27956864-27956883 Msa0881020:intron 45.0%
AGCTGCCACAAAAAAGCTGT+TGG - chr6_1:27956909-27956928 None:intergenic 45.0%
AACTTGAGATCACACTCCCA+AGG + chr6_1:27956960-27956979 Msa0881020:CDS 45.0%
AGCCGGAAGAACATCTGAAA+TGG + chr6_1:27957037-27957056 Msa0881020:CDS 45.0%
GTCCTCAGGTAACAGGAAAA+TGG - chr6_1:27957755-27957774 None:intergenic 45.0%
CGATTATGTCCTCAGGTAAC+AGG - chr6_1:27957762-27957781 None:intergenic 45.0%
GTTACCTGAGGACATAATCG+AGG + chr6_1:27957762-27957781 Msa0881020:CDS 45.0%
CTTACCTCGATTATGTCCTC+AGG - chr6_1:27957769-27957788 None:intergenic 45.0%
CTGAGGACATAATCGAGGTA+AGG + chr6_1:27957767-27957786 Msa0881020:intron 45.0%
! ATCTTCTGGTTGACCTGTCA+AGG - chr6_1:27958000-27958019 None:intergenic 45.0%
GAAGCTACAGGTGATGTTTC+TGG - chr6_1:27958087-27958106 None:intergenic 45.0%
AATGCCAACTCTCCTTAAGC+TGG + chr6_1:27958180-27958199 Msa0881020:exon 45.0%
AGATTCACACTGCCAGCTTA+AGG - chr6_1:27958195-27958214 None:intergenic 45.0%
AATGGAGTGCAAGCACGAAT+TGG - chr6_1:27958519-27958538 None:intergenic 45.0%
! TCAATCGGGTCGTGTTGTTG+TGG + chr6_1:27952374-27952393 Msa0881020:CDS 50.0%
! CAATCGGGTCGTGTTGTTGT+GGG + chr6_1:27952375-27952394 Msa0881020:CDS 50.0%
AGGGGAGATGCGGATAATTG+AGG - chr6_1:27952719-27952738 None:intergenic 50.0%
CAAACTCGAGCTGCAGCAAA+AGG + chr6_1:27953173-27953192 Msa0881020:CDS 50.0%
GGGATCTTAATCCATGGGAG+AGG + chr6_1:27953554-27953573 Msa0881020:CDS 50.0%
CCTTTGCTGAATTGAGGCCA+AGG - chr6_1:27953594-27953613 None:intergenic 50.0%
CCTTGGCCTCAATTCAGCAA+AGG + chr6_1:27953591-27953610 Msa0881020:CDS 50.0%
AAAGGCTATTGGGTGCACAG+TGG + chr6_1:27953609-27953628 Msa0881020:CDS 50.0%
GACAAAATGGCAGGATGTGG+AGG + chr6_1:27954126-27954145 Msa0881020:intron 50.0%
CAGAACAACAGGGGCTCATA+AGG - chr6_1:27954598-27954617 None:intergenic 50.0%
AAAGAGGACGGGGTAGTTGA+TGG + chr6_1:27955345-27955364 Msa0881020:intron 50.0%
GAGGACGGATCTATAGCTGA+TGG + chr6_1:27955471-27955490 Msa0881020:intron 50.0%
AAACTCCAGTTGACCACCCT+TGG - chr6_1:27957508-27957527 None:intergenic 50.0%
TCACCTGTAGCTTCAGCAGA+TGG + chr6_1:27958093-27958112 Msa0881020:CDS 50.0%
ACTGCCAGCTTAAGGAGAGT+TGG - chr6_1:27958187-27958206 None:intergenic 50.0%
CTGGCAGTGTGAATCTCTGT+CGG + chr6_1:27958199-27958218 Msa0881020:three_prime_UTR 50.0%
! TTTGGTGATAGGACCCGCGA+AGG - chr6_1:27951852-27951871 None:intergenic 55.0%
ACTCGAGCTGCAGCAAAAGG+TGG + chr6_1:27953176-27953195 Msa0881020:CDS 55.0%
GCTCGCTCATCTATTGTCCC+AGG - chr6_1:27953520-27953539 None:intergenic 55.0%
CTGAATTGAGGCCAAGGGTG+TGG - chr6_1:27953588-27953607 None:intergenic 55.0%
GCTCTTGCTCCAGAAACTGC+AGG + chr6_1:27954881-27954900 Msa0881020:CDS 55.0%
TTGGCAACCTCCCTGCCTTA+AGG + chr6_1:27956683-27956702 Msa0881020:intron 55.0%
TGTGAAGCCTTAAGGCAGGG+AGG - chr6_1:27956693-27956712 None:intergenic 55.0%
CGTAACAACCTTGCCTGTGC+GGG - chr6_1:27956796-27956815 None:intergenic 55.0%
CCGTAACAACCTTGCCTGTG+CGG - chr6_1:27956797-27956816 None:intergenic 55.0%
CCGCACAGGCAAGGTTGTTA+CGG + chr6_1:27956794-27956813 Msa0881020:intron 55.0%
ACGCATGGGAAACAGGGGAA+GGG - chr6_1:27956841-27956860 None:intergenic 55.0%
AACGCATGGGAAACAGGGGA+AGG - chr6_1:27956842-27956861 None:intergenic 55.0%
CCACAGCGCTCAAAAGCTCA+AGG - chr6_1:27957483-27957502 None:intergenic 55.0%
!! CCTTGAGCTTTTGAGCGCTG+TGG + chr6_1:27957480-27957499 Msa0881020:CDS 55.0%
!! TTTTGAGCGCTGTGGAGCCA+AGG + chr6_1:27957488-27957507 Msa0881020:CDS 55.0%
! TTTGAGCGCTGTGGAGCCAA+GGG + chr6_1:27957489-27957508 Msa0881020:CDS 55.0%
TCGCCATCTGCTGAAGCTAC+AGG - chr6_1:27958099-27958118 None:intergenic 55.0%
GATAGGACCCGCGAAGGAGA+AGG - chr6_1:27951846-27951865 None:intergenic 60.0%
CGAGCTGCAGCAAAAGGTGG+CGG + chr6_1:27953179-27953198 Msa0881020:CDS 60.0%
GCAGATGGGCCTGCAGTTTC+TGG - chr6_1:27954893-27954912 None:intergenic 60.0%
AGGGGAAGGGGGGAAGAAAC+AGG - chr6_1:27956828-27956847 None:intergenic 60.0%
CATGGGAAACAGGGGAAGGG+GGG - chr6_1:27956838-27956857 None:intergenic 60.0%
GCATGGGAAACAGGGGAAGG+GGG - chr6_1:27956839-27956858 None:intergenic 60.0%
CGCATGGGAAACAGGGGAAG+GGG - chr6_1:27956840-27956859 None:intergenic 60.0%
CAAAGGGGCAGTGTGCACAG+TGG + chr6_1:27957366-27957385 Msa0881020:intron 60.0%
TGGAGCCAAGGGTGGTCAAC+TGG + chr6_1:27957500-27957519 Msa0881020:CDS 60.0%
GAAAGACGAAGCCGGCCTCT+TGG + chr6_1:27958298-27958317 Msa0881020:three_prime_UTR 60.0%
! CTTTTGCGCCGAGCACCAAG+AGG - chr6_1:27958316-27958335 None:intergenic 60.0%
TGCGGGCAAGGAGGGGGAAA+TGG - chr6_1:27956779-27956798 None:intergenic 65.0%
TTGCCTGTGCGGGCAAGGAG+GGG - chr6_1:27956786-27956805 None:intergenic 65.0%
CTTGCCTGTGCGGGCAAGGA+GGG - chr6_1:27956787-27956806 None:intergenic 65.0%
CAACCTTGCCTGTGCGGGCA+AGG - chr6_1:27956791-27956810 None:intergenic 65.0%
!! GAAGCCGGCCTCTTGGTGCT+CGG + chr6_1:27958305-27958324 Msa0881020:three_prime_UTR 65.0%
TTCCCCCTCCTTGCCCGCAC+AGG + chr6_1:27956780-27956799 Msa0881020:intron 70.0%
TGCCTGTGCGGGCAAGGAGG+GGG - chr6_1:27956785-27956804 None:intergenic 70.0%
CCTTGCCTGTGCGGGCAAGG+AGG - chr6_1:27956788-27956807 None:intergenic 70.0%
CCTCCTTGCCCGCACAGGCA+AGG + chr6_1:27956785-27956804 Msa0881020:intron 70.0%
! GAGCGCTGTGGAGCCAAGGG+TGG + chr6_1:27957492-27957511 Msa0881020:CDS 70.0%
TGCGCCGAGCACCAAGAGGC+CGG - chr6_1:27958312-27958331 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27951819 27958596 27951819 ID=Msa0881020;Name=Msa0881020
chr6_1 mRNA 27951819 27958596 27951819 ID=Msa0881020-mRNA-1;Parent=Msa0881020;Name=Msa0881020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=224|1|1|1|0.92|0.86|15|399|666
chr6_1 exon 27951819 27951988 27951819 ID=Msa0881020-mRNA-1:exon:6948;Parent=Msa0881020-mRNA-1
chr6_1 exon 27952094 27952234 27952094 ID=Msa0881020-mRNA-1:exon:6949;Parent=Msa0881020-mRNA-1
chr6_1 exon 27952357 27952527 27952357 ID=Msa0881020-mRNA-1:exon:6950;Parent=Msa0881020-mRNA-1
chr6_1 exon 27953158 27953396 27953158 ID=Msa0881020-mRNA-1:exon:6951;Parent=Msa0881020-mRNA-1
chr6_1 exon 27953495 27953666 27953495 ID=Msa0881020-mRNA-1:exon:6952;Parent=Msa0881020-mRNA-1
chr6_1 exon 27953763 27953801 27953763 ID=Msa0881020-mRNA-1:exon:6953;Parent=Msa0881020-mRNA-1
chr6_1 exon 27953948 27954016 27953948 ID=Msa0881020-mRNA-1:exon:6954;Parent=Msa0881020-mRNA-1
chr6_1 exon 27954139 27954255 27954139 ID=Msa0881020-mRNA-1:exon:6955;Parent=Msa0881020-mRNA-1
chr6_1 exon 27954851 27955062 27954851 ID=Msa0881020-mRNA-1:exon:6956;Parent=Msa0881020-mRNA-1
chr6_1 exon 27955518 27955673 27955518 ID=Msa0881020-mRNA-1:exon:6957;Parent=Msa0881020-mRNA-1
chr6_1 exon 27955777 27955976 27955777 ID=Msa0881020-mRNA-1:exon:6958;Parent=Msa0881020-mRNA-1
chr6_1 exon 27956913 27957070 27956913 ID=Msa0881020-mRNA-1:exon:6959;Parent=Msa0881020-mRNA-1
chr6_1 exon 27957451 27957547 27957451 ID=Msa0881020-mRNA-1:exon:6960;Parent=Msa0881020-mRNA-1
chr6_1 exon 27957692 27957783 27957692 ID=Msa0881020-mRNA-1:exon:6961;Parent=Msa0881020-mRNA-1
chr6_1 exon 27958006 27958596 27958006 ID=Msa0881020-mRNA-1:exon:6962;Parent=Msa0881020-mRNA-1
chr6_1 five_prime_UTR 27951819 27951988 27951819 ID=Msa0881020-mRNA-1:five_prime_utr;Parent=Msa0881020-mRNA-1
chr6_1 five_prime_UTR 27952094 27952147 27952094 ID=Msa0881020-mRNA-1:five_prime_utr;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27952148 27952234 27952148 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27952357 27952527 27952357 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27953158 27953396 27953158 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27953495 27953666 27953495 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27953763 27953801 27953763 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27953948 27954016 27953948 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27954139 27954255 27954139 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27954851 27955062 27954851 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27955518 27955673 27955518 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27955777 27955976 27955777 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27956913 27957070 27956913 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27957451 27957547 27957451 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27957692 27957783 27957692 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 CDS 27958006 27958197 27958006 ID=Msa0881020-mRNA-1:cds;Parent=Msa0881020-mRNA-1
chr6_1 three_prime_UTR 27958198 27958596 27958198 ID=Msa0881020-mRNA-1:three_prime_utr;Parent=Msa0881020-mRNA-1
Gene Sequence

>Msa0881020

ATGTCTAGTTTTGTGGGTGTTCTTGTTTCTGATCAATGGCTTCAGAGCCAGTTCACTCAAGTCGAATTAAGAACTCTCAAATCAAAATATGTATCTGAAAGAACTCAATCGGGTCGTGTTGTTGTGGGAAATTTACCTCCCATTTTCAAGAAATTGAAGGCTTTTGCGGAGTTTTTTACTGAGGATGAGATTAAGGCTGTATTGGAAGAGTCGTATCAGAATATGGATGATGAAATTGATTTTGAGTCCTTCCTTAGGGCACATTTAAACTTGCAAACTCGAGCTGCAGCAAAAGGTGGCGGTTCAAAAAGTTCTTCTTCATTTTTGAAGGCAGCTACGACTACTGTTCATCATGCAATTAATGAATCTGAGAAGGCTTCTTATGTCGCACACATTAACAGTTACTTGGCTGAAGATAAATTCATGAAGCAGTTTCTTCCAATTGATCCGTCTACAAATGCATTGTTTGATCTTGCTAAAGATGGAGTCCTGCTTTGCAAGCTTATTAATGTTGCTGTTCCTGGGACAATAGATGAGCGAGCCATTAACACAAAACGGGATCTTAATCCATGGGAGAGGAATGAAAACCACACCCTTGGCCTCAATTCAGCAAAGGCTATTGGGTGCACAGTGGTTAATATTGGTACACAGGATATGGTTGAAGGAAGACCTTATTTGGTACTTGGTCTGATTTCACAAATAATCAAGATTCAATTGTTAGCTGATCTCAATCTGAAGAAAACTCCTCAACTTTTGGAATTAGTGGAAGATGATAAGGATGTGGAGGAGCTTATCAGTTTACCACCGGACAAGGTTTTATTGAAATGGATGAATTTCCACTTGAAGAAAGCTGGTTATGAGAAACAAGTTACAAATTTCTCATCTGATGTAAAGGATGGAGAGGCTTATGCGTACTTGCTTAATGCTCTTGCTCCAGAAACTGCAGGCCCATCTGCCTTGACCATAAGTGATCCGACAGAAAGAGCAAATATGGTTCTTGAGCAGGCAGAGAGATTAGATTGCAAGAGATACCTCACTCCAAAGGACATAGTTGAAGGGTCACCTAACCTTAATCTTGCATTTGTTGCACAAATTTTCCAGCATAGGAATGGGCTTACAGTTGACACGAATAAAATGTCCTTCGCTGAGATGATGACTGATGATGCACAGACATCTCGGGAAGAAAGATGCTTCAGACTCTGGATCAACAGTCTTGGAATTGCTACTTATGTCAATAATGTTTTCGAGGATGTCAGAAATGGATGGGTTCTATTAGAAGTTCTTGATAAGGTTTCACCTGGATCTGTCAATTGGAAGCAGGCGACAAAGCCTCCTATAAAGATGCCATTTCGGAAAGTGGAGAACTGCAACCAAGTTATAAAAATTGGGAAGGACCTAAACTTTTCCTTAGTAAATGTTGCTGGTAACGATATTGTTCAAGGGAATAAGAAGCTCTTACTAGCTTTTTTGTGGCAGCTTATGAGATTTACCATGCTTCAACTTCTGAAAAACTTGAGATCACACTCCCAAGGTAAAGAGATTACTGATGCTGATATACTAAACTGGGCGAATAACAAAGTGAAGAAAGCCGGAAGAACATCTGAAATGGAGAGTTTCAAGGATAAGAATCTTTCCAACGGAATTTTCTTCCTTGAGCTTTTGAGCGCTGTGGAGCCAAGGGTGGTCAACTGGAGTTTAGTTACTAAAGGGGAGACTGATGATGACAAGAAGTTGAATTCAACATATATAATCAGTGTTGCCAGAAAACTTGGATGTTCCATTTTCCTGTTACCTGAGGACATAATCGAGGTCAACCAGAAGATGATACTCACTTTATCTGCTAGCATCATGTACTGGAGCCTGCTGAATTCTGAAGAAAACAGCACACCAGAAACATCACCTGTAGCTTCAGCAGATGGCGAACATGAAACAGATTTAGTCAATGAGGTATCCGATTTAGCTATTGATGATAATGCTGCAGAGAATGCCAACTCTCCTTAA
Protein sequence

>Msa0881020

MSSFVGVLVSDQWLQSQFTQVELRTLKSKYVSERTQSGRVVVGNLPPIFKKLKAFAEFFTEDEIKAVLEESYQNMDDEIDFESFLRAHLNLQTRAAAKGGGSKSSSSFLKAATTTVHHAINESEKASYVAHINSYLAEDKFMKQFLPIDPSTNALFDLAKDGVLLCKLINVAVPGTIDERAINTKRDLNPWERNENHTLGLNSAKAIGCTVVNIGTQDMVEGRPYLVLGLISQIIKIQLLADLNLKKTPQLLELVEDDKDVEELISLPPDKVLLKWMNFHLKKAGYEKQVTNFSSDVKDGEAYAYLLNALAPETAGPSALTISDPTERANMVLEQAERLDCKRYLTPKDIVEGSPNLNLAFVAQIFQHRNGLTVDTNKMSFAEMMTDDAQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSPGSVNWKQATKPPIKMPFRKVENCNQVIKIGKDLNFSLVNVAGNDIVQGNKKLLLAFLWQLMRFTMLQLLKNLRSHSQGKEITDADILNWANNKVKKAGRTSEMESFKDKNLSNGIFFLELLSAVEPRVVNWSLVTKGETDDDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLSASIMYWSLLNSEENSTPETSPVASADGEHETDLVNEVSDLAIDDNAAENANSP*