AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264570 MtrunA17_Chr2g0328751 94.805 154 6 1 1 152 1 154 8.83e-105 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264570 AT5G52370.1 56.818 132 53 2 9 140 10 137 1.31e-46 148
Msa0264570 AT5G58990.1 70.238 84 25 0 53 136 59 142 6.24e-44 142

Find 44 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCTCTTCACTCATTT+TGG 0.107429 2_2:-64488789 None:intergenic
CCTGACCATGAAATTTGTTT+TGG 0.221543 2_2:-64485048 Msa0264570:three_prime_UTR
GACCTTCTTTCTTTCTTTCT+CGG 0.232940 2_2:+64488753 None:intergenic
TCTTCATAGGTATTTCTCTT+TGG 0.248862 2_2:-64484995 Msa0264570:three_prime_UTR
CTTTGTATTGACTTTGGGTT+TGG 0.289890 2_2:-64485233 Msa0264570:three_prime_UTR
GTTTAATTCTCTTTCTTCAT+AGG 0.294112 2_2:-64485008 Msa0264570:three_prime_UTR
TTCTCCCAAAACAAATTTCA+TGG 0.294163 2_2:+64485043 None:intergenic
TACAAAGCATTAACTTGCTT+GGG 0.302226 2_2:+64485249 None:intergenic
AACTTCCTTCCAATGAGTTT+TGG 0.309432 2_2:+64488515 None:intergenic
TAATGCTTTGTATTGACTTT+GGG 0.341936 2_2:-64485238 Msa0264570:three_prime_UTR
AACCTTGTAGAGATTGAGTT+TGG 0.370445 2_2:+64488479 None:intergenic
TTAATGCTTTGTATTGACTT+TGG 0.391640 2_2:-64485239 Msa0264570:exon
CTTTCTTTCTTTCTCGGTTG+CGG 0.399286 2_2:+64488759 None:intergenic
GTGGAGTTCACAAGCGTTGT+TGG 0.404726 2_2:-64485354 Msa0264570:CDS
AAATCAATGGCGAATGCATT+AGG 0.413021 2_2:-64488729 Msa0264570:exon
CTTTGATTTCTTAGTAGCTT+CGG 0.416628 2_2:+64488608 None:intergenic
ATACAAAGCATTAACTTGCT+TGG 0.423842 2_2:+64485248 None:intergenic
CCAAAACAAATTTCATGGTC+AGG 0.438794 2_2:+64485048 None:intergenic
ATACCTTTCGCATTCATGTA+AGG 0.451489 2_2:-64485112 Msa0264570:three_prime_UTR
AGATGGAGAAGAAGTGGAAA+GGG 0.459353 2_2:+64488644 None:intergenic
TTTGGGAGAATAAACTGAAT+GGG 0.470019 2_2:-64485030 Msa0264570:three_prime_UTR
TGGTAACCGATTCCCCAGTT+AGG 0.472104 2_2:+64488543 None:intergenic
GGTTCTGATGAAAGTGAAAG+TGG 0.474945 2_2:+64488665 None:intergenic
ACCACATGGCCAAAACTCAT+TGG 0.495437 2_2:-64488524 Msa0264570:CDS
CACCAAACTCAATCTCTACA+AGG 0.521765 2_2:-64488481 Msa0264570:intron
AGAAAGAAGGTCGAAATCAA+TGG 0.528228 2_2:-64488742 Msa0264570:exon
TCGGAAGCGGCATCAGAAGA+TGG 0.536957 2_2:+64488627 None:intergenic
AAGATGGAGAAGAAGTGGAA+AGG 0.544670 2_2:+64488643 None:intergenic
TGGAAAACATGGAAAAGCAT+GGG 0.563870 2_2:-64488369 Msa0264570:CDS
CGTTGTTGGAGGTACCTCCC+AGG 0.564766 2_2:-64485340 Msa0264570:CDS
TTTCTTAGTAGCTTCGGAAG+CGG 0.572868 2_2:+64488614 None:intergenic
ACAAAGCATTAACTTGCTTG+GGG 0.578946 2_2:+64485250 None:intergenic
CATGGCCAAAACTCATTGGA+AGG 0.579589 2_2:-64488520 Msa0264570:CDS
AACCGAGAAAGAAAGAAAGA+AGG 0.587990 2_2:-64488755 Msa0264570:five_prime_UTR
ACTGTCTGTGGAACTTGTCA+AGG 0.589263 2_2:+64485288 None:intergenic
ATGGAAAACATGGAAAAGCA+TGG 0.589492 2_2:-64488370 Msa0264570:CDS
GAGTTCACAAGCGTTGTTGG+AGG 0.593322 2_2:-64485351 Msa0264570:CDS
TCTGTGGAACTTGTCAAGGT+TGG 0.598044 2_2:+64485292 None:intergenic
ATCAGAAGATGGAGAAGAAG+TGG 0.602316 2_2:+64488638 None:intergenic
CTGGGGAATCGGTTACCACA+TGG 0.607209 2_2:-64488538 Msa0264570:CDS
GAACCTTACATGAATGCGAA+AGG 0.624925 2_2:+64485109 None:intergenic
AAACAAATTTCATGGTCAGG+AGG 0.646633 2_2:+64485051 None:intergenic
AAAATCTAATCTAAGACACA+AGG 0.680620 2_2:+64485189 None:intergenic
GGAAAACATGGAAAAGCATG+GGG 0.695615 2_2:-64488368 Msa0264570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTTTTTTTTTGC+AGG - chr2_2:64485386-64485405 Msa0264570:CDS 10.0%
!!! TTAGTTTTTAATTTTTCAAA+TGG - chr2_2:64485452-64485471 Msa0264570:intron 10.0%
!!! TAGTTTTTAATTTTTCAAAT+GGG - chr2_2:64485453-64485472 Msa0264570:intron 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG + chr2_2:64485765-64485784 None:intergenic 10.0%
!! CATATATAAAAAAATTAAAG+GGG + chr2_2:64487457-64487476 None:intergenic 10.0%
!! CCATATATAAAAAAATTAAA+GGG + chr2_2:64487458-64487477 None:intergenic 10.0%
!! ACCATATATAAAAAAATTAA+AGG + chr2_2:64487459-64487478 None:intergenic 10.0%
!! TAAAATTGTAAGATAATATG+AGG + chr2_2:64486510-64486529 None:intergenic 15.0%
!!! TTGAATCATTTTTATGTTTA+AGG - chr2_2:64486729-64486748 Msa0264570:intron 15.0%
!!! TATTAAATAAAGCAGATTTT+GGG + chr2_2:64486764-64486783 None:intergenic 15.0%
!!! ATATTAAATAAAGCAGATTT+TGG + chr2_2:64486765-64486784 None:intergenic 15.0%
!!! ATGTTTAAAAGTATGTTTAT+TGG - chr2_2:64487097-64487116 Msa0264570:intron 15.0%
!! AAATTTATAATTTCTGTTGA+GGG - chr2_2:64487211-64487230 Msa0264570:intron 15.0%
!!! CCCTTTAATTTTTTTATATA+TGG - chr2_2:64487455-64487474 Msa0264570:intron 15.0%
!!! TTTTTTTTTTTTTTGCAGGA+TGG - chr2_2:64485390-64485409 Msa0264570:CDS 20.0%
!! TATGTTATATCAAATTCACT+TGG - chr2_2:64485572-64485591 Msa0264570:intron 20.0%
!!! AACTTAAAGTTTAAAACAGA+AGG + chr2_2:64486252-64486271 None:intergenic 20.0%
!!! TTTAAACTTTAAGTTCATCA+TGG - chr2_2:64486257-64486276 Msa0264570:intron 20.0%
!! ATCTTGGTTTATCATATAAA+AGG - chr2_2:64486319-64486338 Msa0264570:intron 20.0%
!!! AATCATTTTTATGTTTAAGG+TGG - chr2_2:64486732-64486751 Msa0264570:intron 20.0%
!! TTAAAAAGTCCCTTAAAAAA+GGG + chr2_2:64486912-64486931 None:intergenic 20.0%
!! AAAATACTATATCGAACATT+TGG + chr2_2:64487126-64487145 None:intergenic 20.0%
!! GAAATTTATAATTTCTGTTG+AGG - chr2_2:64487210-64487229 Msa0264570:intron 20.0%
!!! AAAGACCATATAATTTTACA+TGG + chr2_2:64488129-64488148 None:intergenic 20.0%
!!! AATTTGTTCTAGCAATAATT+TGG - chr2_2:64488240-64488259 Msa0264570:intron 20.0%
!!! TTCAAATGGGTTTATTTTTC+TGG - chr2_2:64485466-64485485 Msa0264570:intron 25.0%
! AACTGTTTGATAAATGTTGT+AGG - chr2_2:64485508-64485527 Msa0264570:intron 25.0%
!! AGTCATGTATTTGATGATTT+AGG - chr2_2:64485850-64485869 Msa0264570:intron 25.0%
!! GTCATGTATTTGATGATTTA+GGG - chr2_2:64485851-64485870 Msa0264570:intron 25.0%
!! AAGCATTTGCTACATTATTT+AGG - chr2_2:64485877-64485896 Msa0264570:intron 25.0%
! AGCTTATAACATAAACACTT+AGG + chr2_2:64486055-64486074 None:intergenic 25.0%
!! GTGCAACATATATGAAATTT+TGG + chr2_2:64486192-64486211 None:intergenic 25.0%
!!! TTATTTGGTTTGCTTAATCT+TGG - chr2_2:64486303-64486322 Msa0264570:intron 25.0%
!!! TTGCTTGTTATATTCTTGTT+AGG - chr2_2:64486410-64486429 Msa0264570:intron 25.0%
!!! TGCTTGTTATATTCTTGTTA+GGG - chr2_2:64486411-64486430 Msa0264570:intron 25.0%
!! ATTTAAGGTGATAATCTACT+GGG + chr2_2:64486650-64486669 None:intergenic 25.0%
! AAGCATAAACATCTCATTTA+AGG + chr2_2:64486665-64486684 None:intergenic 25.0%
! TAAATGAGATGTTTATGCTT+AGG - chr2_2:64486665-64486684 Msa0264570:intron 25.0%
!! TTCTACTGATAATGACTATA+TGG + chr2_2:64486793-64486812 None:intergenic 25.0%
! TAAAAAGTCCCTTAAAAAAG+GGG + chr2_2:64486911-64486930 None:intergenic 25.0%
! GTTAAAAAGTCCCTTAAAAA+AGG + chr2_2:64486913-64486932 None:intergenic 25.0%
!! TTTAACTTATGACAAGATGT+AGG - chr2_2:64486927-64486946 Msa0264570:intron 25.0%
! TTAACTTATGACAAGATGTA+GGG - chr2_2:64486928-64486947 Msa0264570:intron 25.0%
! AAAGTAATTGCATTCATTTC+TGG - chr2_2:64486990-64487009 Msa0264570:intron 25.0%
! GCATATGTTTAATAGAAAGA+AGG - chr2_2:64487243-64487262 Msa0264570:intron 25.0%
! ATGTTTAATAGAAAGAAGGA+AGG - chr2_2:64487247-64487266 Msa0264570:intron 25.0%
! TGTTTAATAGAAAGAAGGAA+GGG - chr2_2:64487248-64487267 Msa0264570:intron 25.0%
! AGAAATTCGTCTAAATAGAA+AGG - chr2_2:64487294-64487313 Msa0264570:intron 25.0%
! TATTAAACATATGCTTCCTT+GGG + chr2_2:64487368-64487387 None:intergenic 25.0%
! GCATATGTTTAATAGAAAGA+AGG - chr2_2:64487243-64487262 Msa0264570:intron 25.0%
! ATGTTTAATAGAAAGAAGGA+AGG - chr2_2:64487247-64487266 Msa0264570:intron 25.0%
! TGTTTAATAGAAAGAAGGAA+GGG - chr2_2:64487248-64487267 Msa0264570:intron 25.0%
! TAAAAAAATTAAAGGGGTTC+TGG + chr2_2:64487451-64487470 None:intergenic 25.0%
! TTGAAAATACTCAAGCTTAA+TGG - chr2_2:64487590-64487609 Msa0264570:intron 25.0%
!!! ATACAAAAGTTTGTTAGACA+GGG + chr2_2:64487643-64487662 None:intergenic 25.0%
!!! AATACAAAAGTTTGTTAGAC+AGG + chr2_2:64487644-64487663 None:intergenic 25.0%
! AATAGCTTTCTACATGAAAA+TGG + chr2_2:64487697-64487716 None:intergenic 25.0%
!! TGAAATCTAAAACTATTTCC+CGG + chr2_2:64487849-64487868 None:intergenic 25.0%
!!! AGTTTTAGATTTCAAAGTAC+AGG - chr2_2:64487855-64487874 Msa0264570:intron 25.0%
!!! GTTTTAGATTTCAAAGTACA+GGG - chr2_2:64487856-64487875 Msa0264570:intron 25.0%
!! ATTTTCAATCATAACTGATG+TGG + chr2_2:64487888-64487907 None:intergenic 25.0%
! ATACTTTCAATCTTTGTATG+AGG - chr2_2:64488069-64488088 Msa0264570:intron 25.0%
!!! TACAATGCACACTTTATTTT+TGG + chr2_2:64488310-64488329 None:intergenic 25.0%
!!! TGAACTCCACTAATTTTTTT+CGG + chr2_2:64488415-64488434 None:intergenic 25.0%
!!! TTAATGCTTTGTATTGACTT+TGG - chr2_2:64488540-64488559 Msa0264570:CDS 25.0%
!!! TAATGCTTTGTATTGACTTT+GGG - chr2_2:64488541-64488560 Msa0264570:CDS 25.0%
!! AAAATCTAATCTAAGACACA+AGG + chr2_2:64488593-64488612 None:intergenic 25.0%
!! TCTTAGATTAGATTTTCAAC+TGG - chr2_2:64488597-64488616 Msa0264570:CDS 25.0%
! GTTTAATTCTCTTTCTTCAT+AGG - chr2_2:64488771-64488790 Msa0264570:five_prime_UTR 25.0%
!!! GTTTTGAAGAGTGTTGATTT+TGG + chr2_2:64485078-64485097 None:intergenic 30.0%
! CTTTGATTTCTTAGTAGCTT+CGG + chr2_2:64485174-64485193 None:intergenic 30.0%
TTGAGGTGAATTTCATTGTT+TGG - chr2_2:64485668-64485687 Msa0264570:intron 30.0%
GTGAATTTCATTGTTTGGAT+GGG - chr2_2:64485673-64485692 Msa0264570:intron 30.0%
TGAATTTCATTGTTTGGATG+GGG - chr2_2:64485674-64485693 Msa0264570:intron 30.0%
TCAGGAAATGTAATGTTATG+AGG - chr2_2:64485713-64485732 Msa0264570:intron 30.0%
CAGGAAATGTAATGTTATGA+GGG - chr2_2:64485714-64485733 Msa0264570:intron 30.0%
!!! ACACTCTAGTTTTCACATTT+TGG - chr2_2:64485809-64485828 Msa0264570:intron 30.0%
!!! GTTTTCACATTTTGGAGTAA+AGG - chr2_2:64485817-64485836 Msa0264570:intron 30.0%
!! GCTATTTTCATAAACTATCC+TGG + chr2_2:64485967-64485986 None:intergenic 30.0%
! AGTTTAAGTTTATCCCACTA+AGG + chr2_2:64486107-64486126 None:intergenic 30.0%
ATTCGGATGTTAATATCTCT+AGG - chr2_2:64486156-64486175 Msa0264570:intron 30.0%
!!! GCACTTATTTTATCACACAA+TGG + chr2_2:64486227-64486246 None:intergenic 30.0%
!!! TCTTTTGTCATGGTCTTATT+TGG - chr2_2:64486288-64486307 Msa0264570:intron 30.0%
CCATAAAGAAAGAACAACAA+AGG + chr2_2:64486349-64486368 None:intergenic 30.0%
!! CCTTTGTTGTTCTTTCTTTA+TGG - chr2_2:64486346-64486365 Msa0264570:intron 30.0%
!! GCTTGTTATATTCTTGTTAG+GGG - chr2_2:64486412-64486431 Msa0264570:intron 30.0%
TGTTAATGAAAGAATGAAGC+TGG - chr2_2:64486564-64486583 Msa0264570:intron 30.0%
GTTAATGAAAGAATGAAGCT+GGG - chr2_2:64486565-64486584 Msa0264570:intron 30.0%
! TTTTCAATACGCAAGTTTGA+CGG + chr2_2:64486611-64486630 None:intergenic 30.0%
! AATCTACTGGGTTCTATTTT+TGG + chr2_2:64486638-64486657 None:intergenic 30.0%
! CATTTAAGGTGATAATCTAC+TGG + chr2_2:64486651-64486670 None:intergenic 30.0%
GATTCAATAAGCAAGTTTGA+TGG + chr2_2:64486716-64486735 None:intergenic 30.0%
!! CATTTTTATGTTTAAGGTGG+TGG - chr2_2:64486735-64486754 Msa0264570:intron 30.0%
!!! AACATAGAACCCCTTTTTTA+AGG - chr2_2:64486899-64486918 Msa0264570:intron 30.0%
!!! ACATAGAACCCCTTTTTTAA+GGG - chr2_2:64486900-64486919 Msa0264570:intron 30.0%
!!! GGTTTTGTTATAAAACGTGT+TGG - chr2_2:64487011-64487030 Msa0264570:intron 30.0%
CTTAGTAGAACATTCTAACA+AGG + chr2_2:64487161-64487180 None:intergenic 30.0%
AGAAAGGATTGTAATCTTGA+AGG - chr2_2:64487310-64487329 Msa0264570:intron 30.0%
CTATTAAACATATGCTTCCT+TGG + chr2_2:64487369-64487388 None:intergenic 30.0%
ATATATGGTTGTAATCCTGA+AGG - chr2_2:64487470-64487489 Msa0264570:intron 30.0%
TATTCTAGGTATTACTAGCA+AGG - chr2_2:64487497-64487516 Msa0264570:intron 30.0%
TACTAGCAAGGATTGTAATT+TGG - chr2_2:64487509-64487528 Msa0264570:intron 30.0%
TATGCATGTTTATGTTACCT+TGG - chr2_2:64487536-64487555 Msa0264570:intron 30.0%
TGCACTCAAATAAAATTCCA+AGG + chr2_2:64487556-64487575 None:intergenic 30.0%
TCATATTTCAGCTTGACTTT+AGG - chr2_2:64487788-64487807 Msa0264570:intron 30.0%
! GAAATCTAAAACTATTTCCC+GGG + chr2_2:64487848-64487867 None:intergenic 30.0%
!! GTCAACATTGTCTTTTTCAT+TGG - chr2_2:64488091-64488110 Msa0264570:intron 30.0%
GTGCTCCATGTAAAATTATA+TGG - chr2_2:64488121-64488140 Msa0264570:intron 30.0%
!! AATTGTATGTGTTGCTTGTA+TGG - chr2_2:64488179-64488198 Msa0264570:intron 30.0%
GATATCATGTAAATTGTTGC+AGG - chr2_2:64488370-64488389 Msa0264570:CDS 30.0%
!! TACAAAGCATTAACTTGCTT+GGG + chr2_2:64488533-64488552 None:intergenic 30.0%
!! ATACAAAGCATTAACTTGCT+TGG + chr2_2:64488534-64488553 None:intergenic 30.0%
!! CTGACCATGAAATTTGTTTT+GGG - chr2_2:64488732-64488751 Msa0264570:exon 30.0%
TTCTCCCAAAACAAATTTCA+TGG + chr2_2:64488739-64488758 None:intergenic 30.0%
!! TTTTGGGAGAATAAACTGAA+TGG - chr2_2:64488748-64488767 Msa0264570:five_prime_UTR 30.0%
TTTGGGAGAATAAACTGAAT+GGG - chr2_2:64488749-64488768 Msa0264570:five_prime_UTR 30.0%
TCTTCATAGGTATTTCTCTT+TGG - chr2_2:64488784-64488803 Msa0264570:five_prime_UTR 30.0%
AACCGAGAAAGAAAGAAAGA+AGG - chr2_2:64485024-64485043 Msa0264570:three_prime_UTR 35.0%
GACCTTCTTTCTTTCTTTCT+CGG + chr2_2:64485029-64485048 None:intergenic 35.0%
AGAAAGAAGGTCGAAATCAA+TGG - chr2_2:64485037-64485056 Msa0264570:three_prime_UTR 35.0%
AAATCAATGGCGAATGCATT+AGG - chr2_2:64485050-64485069 Msa0264570:three_prime_UTR 35.0%
! TAGCTCAGTTTTTACCTAAC+TGG - chr2_2:64485222-64485241 Msa0264570:three_prime_UTR 35.0%
! AGCTCAGTTTTTACCTAACT+GGG - chr2_2:64485223-64485242 Msa0264570:three_prime_UTR 35.0%
! TTTTTACCTAACTGGGGAAT+CGG - chr2_2:64485230-64485249 Msa0264570:three_prime_UTR 35.0%
! AACTTCCTTCCAATGAGTTT+TGG + chr2_2:64485267-64485286 None:intergenic 35.0%
AACCTTGTAGAGATTGAGTT+TGG + chr2_2:64485303-64485322 None:intergenic 35.0%
! TTTTTGCAGGATGGAAAACA+TGG - chr2_2:64485399-64485418 Msa0264570:intron 35.0%
ATGGAAAACATGGAAAAGCA+TGG - chr2_2:64485409-64485428 Msa0264570:intron 35.0%
! TGGAAAACATGGAAAAGCAT+GGG - chr2_2:64485410-64485429 Msa0264570:intron 35.0%
!! TGGGGTATTGCTCATAAAAA+TGG - chr2_2:64485429-64485448 Msa0264570:intron 35.0%
TGAGGGAATGTAATGTTATG+AGG - chr2_2:64485632-64485651 Msa0264570:intron 35.0%
GAGGGAATGTAATGTTATGA+GGG - chr2_2:64485633-64485652 Msa0264570:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr2_2:64485651-64485670 Msa0264570:intron 35.0%
GGTGAATTTCATTGTTTGGA+TGG - chr2_2:64485672-64485691 Msa0264570:intron 35.0%
GAATTTCATTGTTTGGATGG+GGG - chr2_2:64485675-64485694 Msa0264570:intron 35.0%
GGGAATGTAATGTAATGTTC+AGG - chr2_2:64485695-64485714 Msa0264570:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG - chr2_2:64485651-64485670 Msa0264570:intron 35.0%
TGTCTTTGGATGAGGTAATT+TGG + chr2_2:64485792-64485811 None:intergenic 35.0%
! TGTGAAAACTAGAGTGTCTT+TGG + chr2_2:64485806-64485825 None:intergenic 35.0%
!!! TCACATTTTGGAGTAAAGGT+TGG - chr2_2:64485821-64485840 Msa0264570:intron 35.0%
!! CTTATTTTCATATGCTCTCC+AGG - chr2_2:64485946-64485965 Msa0264570:intron 35.0%
ATTCAAAACCAAGCCTTAGT+GGG - chr2_2:64486091-64486110 Msa0264570:intron 35.0%
!! GGCTGATTTATCTTTTGTCA+TGG - chr2_2:64486278-64486297 Msa0264570:intron 35.0%
ACCTAAATCCAGATATTGCT+TGG - chr2_2:64486459-64486478 Msa0264570:intron 35.0%
CCTAAATCCAGATATTGCTT+GGG - chr2_2:64486460-64486479 Msa0264570:intron 35.0%
CTAAATCCAGATATTGCTTG+GGG - chr2_2:64486461-64486480 Msa0264570:intron 35.0%
!! TTTTATGTTTAAGGTGGTGG+TGG - chr2_2:64486738-64486757 Msa0264570:intron 35.0%
! GCTTTTGCTAGTGTATTAGA+TGG - chr2_2:64487065-64487084 Msa0264570:intron 35.0%
AGGATTGTAATCTTGAAGGA+TGG - chr2_2:64487314-64487333 Msa0264570:intron 35.0%
ATCTTGAAGGATGGTATACT+AGG - chr2_2:64487323-64487342 Msa0264570:intron 35.0%
ATTTCAGCTTGACTTTAGGT+TGG - chr2_2:64487792-64487811 Msa0264570:intron 35.0%
! TTTCAGCTTGACTTTAGGTT+GGG - chr2_2:64487793-64487812 Msa0264570:intron 35.0%
AGTCTACTGCTTTGATCAAA+TGG + chr2_2:64487913-64487932 None:intergenic 35.0%
!! GTACTACATCGTCATTTTCT+AGG + chr2_2:64487939-64487958 None:intergenic 35.0%
AGTGTGAAGTGTGTAAATGA+AGG - chr2_2:64487974-64487993 Msa0264570:intron 35.0%
TTTCCATGCAAGTGGTATTA+CGG - chr2_2:64488017-64488036 Msa0264570:intron 35.0%
!!! CTTTTTCAGCACTTATTCTC+TGG - chr2_2:64488339-64488358 Msa0264570:intron 35.0%
!! TTTTTCGGAGCATCTACTAT+TGG + chr2_2:64488400-64488419 None:intergenic 35.0%
GATGCTCCGAAAAAAATTAG+TGG - chr2_2:64488406-64488425 Msa0264570:intron 35.0%
!! AACTTTTAAGTCACTGTCTG+TGG + chr2_2:64488506-64488525 None:intergenic 35.0%
!! ACAAAGCATTAACTTGCTTG+GGG + chr2_2:64488532-64488551 None:intergenic 35.0%
!! CTTTGTATTGACTTTGGGTT+TGG - chr2_2:64488546-64488565 Msa0264570:CDS 35.0%
ATACCTTTCGCATTCATGTA+AGG - chr2_2:64488667-64488686 Msa0264570:CDS 35.0%
AAACAAATTTCATGGTCAGG+AGG + chr2_2:64488731-64488750 None:intergenic 35.0%
CCAAAACAAATTTCATGGTC+AGG + chr2_2:64488734-64488753 None:intergenic 35.0%
!! CCTGACCATGAAATTTGTTT+TGG - chr2_2:64488731-64488750 Msa0264570:exon 35.0%
CTTTCTTTCTTTCTCGGTTG+CGG + chr2_2:64485023-64485042 None:intergenic 40.0%
! GGTTCTGATGAAAGTGAAAG+TGG + chr2_2:64485117-64485136 None:intergenic 40.0%
AGATGGAGAAGAAGTGGAAA+GGG + chr2_2:64485138-64485157 None:intergenic 40.0%
AAGATGGAGAAGAAGTGGAA+AGG + chr2_2:64485139-64485158 None:intergenic 40.0%
ATCAGAAGATGGAGAAGAAG+TGG + chr2_2:64485144-64485163 None:intergenic 40.0%
TTTCTTAGTAGCTTCGGAAG+CGG + chr2_2:64485168-64485187 None:intergenic 40.0%
! GCTCAGTTTTTACCTAACTG+GGG - chr2_2:64485224-64485243 Msa0264570:three_prime_UTR 40.0%
CACCAAACTCAATCTCTACA+AGG - chr2_2:64485298-64485317 Msa0264570:CDS 40.0%
! GGAAAACATGGAAAAGCATG+GGG - chr2_2:64485411-64485430 Msa0264570:intron 40.0%
TAAGAGCCTTAGAGTGTGTT+TGG - chr2_2:64485595-64485614 Msa0264570:intron 40.0%
! AACTAGAGTGTCTTTGGATG+AGG + chr2_2:64485800-64485819 None:intergenic 40.0%
CATTCAAAACCAAGCCTTAG+TGG - chr2_2:64486090-64486109 Msa0264570:intron 40.0%
AAGTTTATCCCACTAAGGCT+TGG + chr2_2:64486102-64486121 None:intergenic 40.0%
TCTTTCATGCTACCTGTTTC+TGG - chr2_2:64486129-64486148 Msa0264570:intron 40.0%
CCCAAGCAATATCTGGATTT+AGG + chr2_2:64486463-64486482 None:intergenic 40.0%
ATATTGCTTGGGGTGGATAT+TGG - chr2_2:64486471-64486490 Msa0264570:intron 40.0%
!! AGTTTGATGGTGATCTCGTA+AGG + chr2_2:64486703-64486722 None:intergenic 40.0%
! GAACATTGAGTCACTTTCCT+AGG - chr2_2:64486838-64486857 Msa0264570:intron 40.0%
CGAATTTCTGATCCTTCCTT+GGG + chr2_2:64487283-64487302 None:intergenic 40.0%
ACGAATTTCTGATCCTTCCT+TGG + chr2_2:64487284-64487303 None:intergenic 40.0%
ATGGTATACTAGGATCTGTC+AGG - chr2_2:64487333-64487352 Msa0264570:intron 40.0%
CAGATTTCTGATCCTTCCTT+GGG + chr2_2:64487414-64487433 None:intergenic 40.0%
ACAGATTTCTGATCCTTCCT+TGG + chr2_2:64487415-64487434 None:intergenic 40.0%
AGGAAGGATCAGAAATCTGT+CGG - chr2_2:64487415-64487434 Msa0264570:intron 40.0%
ATGGTTGTAATCCTGAAGGA+TGG - chr2_2:64487474-64487493 Msa0264570:intron 40.0%
ATCCTGAAGGATGGTATTCT+AGG - chr2_2:64487483-64487502 Msa0264570:intron 40.0%
TACCTAGAATACCATCCTTC+AGG + chr2_2:64487488-64487507 None:intergenic 40.0%
! ACTCAAGCTTAATGGATAGC+TGG - chr2_2:64487598-64487617 Msa0264570:intron 40.0%
AAGCGAAATACCCTTGTGTA+CGG - chr2_2:64487732-64487751 Msa0264570:intron 40.0%
ACTCACTATACCGTACACAA+GGG + chr2_2:64487745-64487764 None:intergenic 40.0%
TACTCACTATACCGTACACA+AGG + chr2_2:64487746-64487765 None:intergenic 40.0%
TAAAACTATTTCCCGGGAGT+GGG + chr2_2:64487842-64487861 None:intergenic 40.0%
!! TGAAGGTATTGCATATCAGC+AGG - chr2_2:64487991-64488010 Msa0264570:intron 40.0%
!! GAAGGTATTGCATATCAGCA+GGG - chr2_2:64487992-64488011 Msa0264570:intron 40.0%
TTGCTTGTATGGAAGCTTAG+AGG - chr2_2:64488190-64488209 Msa0264570:intron 40.0%
! CTGATGCTTTTACTACACCT+GGG + chr2_2:64488459-64488478 None:intergenic 40.0%
! TCTGATGCTTTTACTACACC+TGG + chr2_2:64488460-64488479 None:intergenic 40.0%
GAACCTTACATGAATGCGAA+AGG + chr2_2:64488673-64488692 None:intergenic 40.0%
ACCACATGGCCAAAACTCAT+TGG - chr2_2:64485255-64485274 Msa0264570:exon 45.0%
!! TCCAATGAGTTTTGGCCATG+TGG + chr2_2:64485259-64485278 None:intergenic 45.0%
CATGGCCAAAACTCATTGGA+AGG - chr2_2:64485259-64485278 Msa0264570:CDS 45.0%
AGCCTTAGAGTGTGTTTGGA+TGG - chr2_2:64485599-64485618 Msa0264570:intron 45.0%
GCCTTAGAGTGTGTTTGGAT+GGG - chr2_2:64485600-64485619 Msa0264570:intron 45.0%
CCTTAGAGTGTGTTTGGATG+GGG - chr2_2:64485601-64485620 Msa0264570:intron 45.0%
CTTAGAGTGTGTTTGGATGG+GGG - chr2_2:64485602-64485621 Msa0264570:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr2_2:64485614-64485633 Msa0264570:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr2_2:64485615-64485634 Msa0264570:intron 45.0%
!! TCATGCTACCTGTTTCTGGT+CGG - chr2_2:64486133-64486152 Msa0264570:intron 45.0%
!! TACCTGTTTCTGGTCGGATT+CGG - chr2_2:64486139-64486158 Msa0264570:intron 45.0%
ACAAGCAAATCGCATGCATG+TGG + chr2_2:64486398-64486417 None:intergenic 45.0%
AATCCAGATATTGCTTGGGG+TGG - chr2_2:64486464-64486483 Msa0264570:intron 45.0%
TATCCACCCCAAGCAATATC+TGG + chr2_2:64486470-64486489 None:intergenic 45.0%
!! CTGGGTGTATTTTTGAGAGC+TGG - chr2_2:64486583-64486602 Msa0264570:intron 45.0%
ATGGTGATCTCGTAAGGTGA+AGG + chr2_2:64486697-64486716 None:intergenic 45.0%
AAAACCATTCTGCACAGCCT+AGG + chr2_2:64486858-64486877 None:intergenic 45.0%
! AGGCTGTGCAGAATGGTTTT+TGG - chr2_2:64486858-64486877 Msa0264570:intron 45.0%
TGTCAGGAGAGTAAATCCCA+AGG - chr2_2:64487349-64487368 Msa0264570:intron 45.0%
GGAAGGATCAGAAATCTGTC+GGG - chr2_2:64487416-64487435 Msa0264570:intron 45.0%
CTAAAACTATTTCCCGGGAG+TGG + chr2_2:64487843-64487862 None:intergenic 45.0%
! ATGCTTTTACTACACCTGGG+AGG + chr2_2:64488456-64488475 None:intergenic 45.0%
TCTGTGGAACTTGTCAAGGT+TGG + chr2_2:64488490-64488509 None:intergenic 45.0%
ACTGTCTGTGGAACTTGTCA+AGG + chr2_2:64488494-64488513 None:intergenic 45.0%
! TGGTAACCGATTCCCCAGTT+AGG + chr2_2:64485239-64485258 None:intergenic 50.0%
CCCCATCCAAACACACTCTA+AGG + chr2_2:64485604-64485623 None:intergenic 50.0%
ATCCGAATCCGACCAGAAAC+AGG + chr2_2:64486144-64486163 None:intergenic 50.0%
CTTTCCTAGGCTGTGCAGAA+TGG - chr2_2:64486851-64486870 Msa0264570:intron 50.0%
GGAAGGGAGAGTAAATCCCA+AGG - chr2_2:64487264-64487283 Msa0264570:intron 50.0%
GGGAGAGTAAATCCCAAGGA+AGG - chr2_2:64487268-64487287 Msa0264570:intron 50.0%
GGAAGGGAGAGTAAATCCCA+AGG - chr2_2:64487264-64487283 Msa0264570:intron 50.0%
GGGAGAGTAAATCCCAAGGA+AGG - chr2_2:64487268-64487287 Msa0264570:intron 50.0%
GTTAGACAGGGACTTCGTCT+TGG + chr2_2:64487631-64487650 None:intergenic 50.0%
AGGTTGGGTTCCTTCTGAGT+TGG - chr2_2:64487808-64487827 Msa0264570:intron 50.0%
GGTGAGTTTGCCAACTCAGA+AGG + chr2_2:64487821-64487840 None:intergenic 50.0%
! GCAGGGATTTTCCATGCAAG+TGG - chr2_2:64488009-64488028 Msa0264570:intron 50.0%
CTGCCGTAATACCACTTGCA+TGG + chr2_2:64488023-64488042 None:intergenic 50.0%
CATGCAAGTGGTATTACGGC+AGG - chr2_2:64488021-64488040 Msa0264570:intron 50.0%
! GTGGAGTTCACAAGCGTTGT+TGG - chr2_2:64488425-64488444 Msa0264570:intron 50.0%
! GAGTTCACAAGCGTTGTTGG+AGG - chr2_2:64488428-64488447 Msa0264570:intron 50.0%
TCGGAAGCGGCATCAGAAGA+TGG + chr2_2:64485155-64485174 None:intergenic 55.0%
CTGGGGAATCGGTTACCACA+TGG - chr2_2:64485241-64485260 Msa0264570:exon 55.0%
TTGGCAAACTCACCCACTCC+CGG - chr2_2:64487827-64487846 Msa0264570:intron 55.0%
TGGCAAACTCACCCACTCCC+GGG - chr2_2:64487828-64487847 Msa0264570:intron 60.0%
!! CGTTGTTGGAGGTACCTCCC+AGG - chr2_2:64488439-64488458 Msa0264570:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64484994 64488807 64484994 ID=Msa0264570;Name=Msa0264570
chr2_2 mRNA 64484994 64488807 64484994 ID=Msa0264570-mRNA-1;Parent=Msa0264570;Name=Msa0264570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|1|1|1|1|1|3|264|152
chr2_2 exon 64484994 64485409 64484994 ID=Msa0264570-mRNA-1:exon:20134;Parent=Msa0264570-mRNA-1
chr2_2 exon 64488351 64488393 64488351 ID=Msa0264570-mRNA-1:exon:20133;Parent=Msa0264570-mRNA-1
chr2_2 exon 64488482 64488807 64488482 ID=Msa0264570-mRNA-1:exon:20132;Parent=Msa0264570-mRNA-1
chr2_2 five_prime_UTR 64488746 64488807 64488746 ID=Msa0264570-mRNA-1:five_prime_utr;Parent=Msa0264570-mRNA-1
chr2_2 CDS 64488482 64488745 64488482 ID=Msa0264570-mRNA-1:cds;Parent=Msa0264570-mRNA-1
chr2_2 CDS 64488351 64488393 64488351 ID=Msa0264570-mRNA-1:cds;Parent=Msa0264570-mRNA-1
chr2_2 CDS 64485258 64485409 64485258 ID=Msa0264570-mRNA-1:cds;Parent=Msa0264570-mRNA-1
chr2_2 three_prime_UTR 64484994 64485257 64484994 ID=Msa0264570-mRNA-1:three_prime_utr;Parent=Msa0264570-mRNA-1
Gene Sequence

>Msa0264570

ATGGCGAATGCATTAGGCACCAAAATCAACACTCTTCAAAACTCTTCTATTCTCAAATCCACTTTCACTTTCATCAGAACCCTTTCCACTTCTTCTCCATCTTCTGATGCCGCTTCCGAAGCTACTAAGAAATCAAAGCGAAGAAAGAAGAAAAACTTTTTCGAAGTAGCTCAGTTTTTACCTAACTGGGGAATCGGTTACCACATGGCCAAAACTCATTGGAAGGAAGTTTCTTACGAAATCACCAAACTCAATCTCTACAAGGATGGAAAACATGGAAAAGCATGGGGTATTGCTCATAAAAATGGTTTGCCAATAGTAGATGCTCCGAAAAAAATTAGTGGAGTTCACAAGCGTTGTTGGAGGTACCTCCCAGGTGTAGTAAAAGCATCAGAAAGTTCACCAACCTTGACAAGTTCCACAGACAGTGACTTAAAAGTTGAACCCCAAGCAAGTTAA

Protein sequence

>Msa0264570

MANALGTKINTLQNSSILKSTFTFIRTLSTSSPSSDAASEATKKSKRRKKKNFFEVAQFLPNWGIGYHMAKTHWKEVSYEITKLNLYKDGKHGKAWGIAHKNGLPIVDAPKKISGVHKRCWRYLPGVVKASESSPTLTSSTDSDLKVEPQAS*