Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0340410 | KEH39510.1 | 55.556 | 117 | 23 | 2 | 23 | 114 | 12 | 124 | 4.05e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194440 | Msa0340410 | 0.819959 | 8.829783e-53 | -8.615850e-47 |
| Msa0340390 | Msa0340410 | 0.809300 | 2.025185e-50 | -8.615850e-47 |
| Msa0340410 | Msa0340470 | 0.819341 | 1.222202e-52 | -8.615850e-47 |
| Msa0340410 | Msa0598880 | -0.804374 | 2.227522e-49 | -8.615850e-47 |
| Msa0340410 | Msa0925290 | 0.805419 | 1.346979e-49 | -8.615850e-47 |
| Msa0340410 | Msa1372760 | 0.807260 | 5.512901e-50 | -8.615850e-47 |
| Msa0340410 | Msa1454430 | 0.803447 | 3.471778e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGGGTTCAATATCTTTA+TGG | 0.183713 | 2_4:-61764869 | Msa0340410:CDS |
| TCTCTCGTCGTCACAGCAAA+TGG | 0.378944 | 2_4:-61765687 | Msa0340410:CDS |
| AAGATGTTGATGAAGGTCTA+AGG | 0.417135 | 2_4:-61765789 | Msa0340410:CDS |
| TTCCTTCCTGTTGTCTATTG+TGG | 0.433880 | 2_4:+61765810 | None:intergenic |
| AACAGCGACAAAGCTCTGTT+TGG | 0.435533 | 2_4:-61765745 | Msa0340410:CDS |
| CCACCACCACAATAGACAAC+AGG | 0.483309 | 2_4:-61765816 | Msa0340410:CDS |
| TTGGAGTTGAAAAGGCGATC+TGG | 0.488634 | 2_4:+61765721 | None:intergenic |
| CTCTCGTCGTCACAGCAAAT+GGG | 0.488740 | 2_4:-61765686 | Msa0340410:CDS |
| CAGGAACGAAGATTGCAGAT+TGG | 0.496990 | 2_4:-61764908 | Msa0340410:CDS |
| TGTGGTCGTTGGAGTTGAAA+AGG | 0.508406 | 2_4:+61765713 | None:intergenic |
| CACCGCTGTCTATGCGGCGA+TGG | 0.515264 | 2_4:-61765874 | Msa0340410:CDS |
| CTTCCTGTTGTCTATTGTGG+TGG | 0.519411 | 2_4:+61765813 | None:intergenic |
| CCTGTTGTCTATTGTGGTGG+TGG | 0.526419 | 2_4:+61765816 | None:intergenic |
| TGTCTATGCGGCGATGGTGA+CGG | 0.564115 | 2_4:-61765868 | Msa0340410:CDS |
| GCGATGGTGACGGTGGTGCT+AGG | 0.569932 | 2_4:-61765858 | Msa0340410:CDS |
| TTGTCTATTGTGGTGGTGGT+CGG | 0.572841 | 2_4:+61765820 | None:intergenic |
| ATATTGAACCCTCACTTGTA+CGG | 0.574872 | 2_4:+61764877 | None:intergenic |
| TAAATGCGGAACTAGAAAGA+TGG | 0.577341 | 2_4:+61764830 | None:intergenic |
| AGGAAGGAAGATGTTGATGA+AGG | 0.579857 | 2_4:-61765796 | Msa0340410:CDS |
| TTGATGAAGGTCTAAGGCAG+AGG | 0.584118 | 2_4:-61765783 | Msa0340410:CDS |
| ACGAGAGACAGTGTGGTCGT+TGG | 0.590182 | 2_4:+61765702 | None:intergenic |
| GTTTGCACACCGTACAAGTG+AGG | 0.595543 | 2_4:-61764886 | Msa0340410:CDS |
| TTGTGGTGGTGGTCGGTGAA+AGG | 0.598501 | 2_4:+61765827 | None:intergenic |
| TTTGCACACCGTACAAGTGA+GGG | 0.621662 | 2_4:-61764885 | Msa0340410:CDS |
| ATGAAGGTCTAAGGCAGAGG+TGG | 0.630282 | 2_4:-61765780 | Msa0340410:CDS |
| CACCATCGCCGCATAGACAG+CGG | 0.661793 | 2_4:+61765872 | None:intergenic |
| CACCACAATAGACAACAGGA+AGG | 0.682027 | 2_4:-61765812 | Msa0340410:CDS |
| GGCTAGCACCGCTGTCTATG+CGG | 0.701078 | 2_4:-61765880 | Msa0340410:intron |
| CTATGCGGCGATGGTGACGG+TGG | 0.705728 | 2_4:-61765865 | Msa0340410:CDS |
| CAAGCAGCAAGACATAAATG+CGG | 0.729277 | 2_4:+61764816 | None:intergenic |
| TGTGACGACGAGAGACAGTG+TGG | 0.802230 | 2_4:+61765695 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAAATTTATTAAGATT+GGG | - | chr2_4:61765387-61765406 | Msa0340410:intron | 10.0% |
| !! | TTTGTAAATTTATTAAGATT+GGG | - | chr2_4:61765387-61765406 | Msa0340410:intron | 10.0% |
| !!! | TAAACATTTCTATTCAATTT+TGG | + | chr2_4:61764884-61764903 | None:intergenic | 15.0% |
| !! | AAAATTGAATAGAAATGTTT+AGG | - | chr2_4:61764883-61764902 | Msa0340410:CDS | 15.0% |
| !!! | ATTATATAACCTGTATATTT+TGG | - | chr2_4:61765361-61765380 | Msa0340410:intron | 15.0% |
| !! | GTTTGTAAATTTATTAAGAT+TGG | - | chr2_4:61765386-61765405 | Msa0340410:intron | 15.0% |
| !! | TTGTAAATTTATTAAGATTG+GGG | - | chr2_4:61765388-61765407 | Msa0340410:intron | 15.0% |
| !!! | TAAACATTTCTATTCAATTT+TGG | + | chr2_4:61764884-61764903 | None:intergenic | 15.0% |
| !! | AAAATTGAATAGAAATGTTT+AGG | - | chr2_4:61764883-61764902 | Msa0340410:CDS | 15.0% |
| !!! | ATTATATAACCTGTATATTT+TGG | - | chr2_4:61765361-61765380 | Msa0340410:intron | 15.0% |
| !! | GTTTGTAAATTTATTAAGAT+TGG | - | chr2_4:61765386-61765405 | Msa0340410:intron | 15.0% |
| !! | TTGTAAATTTATTAAGATTG+GGG | - | chr2_4:61765388-61765407 | Msa0340410:intron | 15.0% |
| !! | TGTAAATTTATTAAGATTGG+GGG | - | chr2_4:61765389-61765408 | Msa0340410:intron | 20.0% |
| !!! | TTTGCAATTTGATTTTTTTC+TGG | - | chr2_4:61765456-61765475 | Msa0340410:intron | 20.0% |
| !!! | TTGCAATTTGATTTTTTTCT+GGG | - | chr2_4:61765457-61765476 | Msa0340410:intron | 20.0% |
| !! | AATGTCTAGAAACTTATAAA+CGG | + | chr2_4:61765688-61765707 | None:intergenic | 20.0% |
| !! | TGTAAATTTATTAAGATTGG+GGG | - | chr2_4:61765389-61765408 | Msa0340410:intron | 20.0% |
| !!! | TTTGCAATTTGATTTTTTTC+TGG | - | chr2_4:61765456-61765475 | Msa0340410:intron | 20.0% |
| !!! | TTGCAATTTGATTTTTTTCT+GGG | - | chr2_4:61765457-61765476 | Msa0340410:intron | 20.0% |
| !! | AATGTCTAGAAACTTATAAA+CGG | + | chr2_4:61765688-61765707 | None:intergenic | 20.0% |
| ! | TACAAACTTCCAAAATATAC+AGG | + | chr2_4:61765373-61765392 | None:intergenic | 25.0% |
| !!! | TGCAATTTGATTTTTTTCTG+GGG | - | chr2_4:61765458-61765477 | Msa0340410:intron | 25.0% |
| ! | AATGGAAATGAAATGATTAC+TGG | - | chr2_4:61765486-61765505 | Msa0340410:intron | 25.0% |
| ! | AAACTTATAAACGGTTATTG+TGG | + | chr2_4:61765679-61765698 | None:intergenic | 25.0% |
| !! | TTTTTCTAGATTGAAGTCTT+TGG | - | chr2_4:61765716-61765735 | Msa0340410:CDS | 25.0% |
| !! | TATGAGTTTAAGACATTGAT+AGG | + | chr2_4:61765792-61765811 | None:intergenic | 25.0% |
| ! | TACAAACTTCCAAAATATAC+AGG | + | chr2_4:61765373-61765392 | None:intergenic | 25.0% |
| !!! | TGCAATTTGATTTTTTTCTG+GGG | - | chr2_4:61765458-61765477 | Msa0340410:intron | 25.0% |
| ! | AATGGAAATGAAATGATTAC+TGG | - | chr2_4:61765486-61765505 | Msa0340410:intron | 25.0% |
| ! | AAACTTATAAACGGTTATTG+TGG | + | chr2_4:61765679-61765698 | None:intergenic | 25.0% |
| !! | TTTTTCTAGATTGAAGTCTT+TGG | - | chr2_4:61765716-61765735 | Msa0340410:CDS | 25.0% |
| !! | TATGAGTTTAAGACATTGAT+AGG | + | chr2_4:61765792-61765811 | None:intergenic | 25.0% |
| !! | TTTGGCTCTTTATGTCAAAA+TGG | + | chr2_4:61764866-61764885 | None:intergenic | 30.0% |
| CACAAATTAACACGCAAAAA+CGG | + | chr2_4:61765148-61765167 | None:intergenic | 30.0% | |
| !!! | TTTTGCGTGTTAATTTGTGT+TGG | - | chr2_4:61765149-61765168 | Msa0340410:intron | 30.0% |
| !! | TTTGCGTGTTAATTTGTGTT+GGG | - | chr2_4:61765150-61765169 | Msa0340410:intron | 30.0% |
| !!! | TTTTTTTCTGGGGTTAGAAA+TGG | - | chr2_4:61765468-61765487 | Msa0340410:intron | 30.0% |
| AAGTTGAACAATCATCAACT+TGG | + | chr2_4:61765574-61765593 | None:intergenic | 30.0% | |
| TTAACCAATCTTGTTCTGTT+CGG | + | chr2_4:61765613-61765632 | None:intergenic | 30.0% | |
| ! | AACAGAACAAGATTGGTTAA+TGG | - | chr2_4:61765613-61765632 | Msa0340410:intron | 30.0% |
| ! | GATTGGTTAATGGAACTTAT+TGG | - | chr2_4:61765623-61765642 | Msa0340410:intron | 30.0% |
| !! | TTTGGCTCTTTATGTCAAAA+TGG | + | chr2_4:61764866-61764885 | None:intergenic | 30.0% |
| CACAAATTAACACGCAAAAA+CGG | + | chr2_4:61765148-61765167 | None:intergenic | 30.0% | |
| !!! | TTTTGCGTGTTAATTTGTGT+TGG | - | chr2_4:61765149-61765168 | Msa0340410:intron | 30.0% |
| !! | TTTGCGTGTTAATTTGTGTT+GGG | - | chr2_4:61765150-61765169 | Msa0340410:intron | 30.0% |
| !!! | TTTTTTTCTGGGGTTAGAAA+TGG | - | chr2_4:61765468-61765487 | Msa0340410:intron | 30.0% |
| AAGTTGAACAATCATCAACT+TGG | + | chr2_4:61765574-61765593 | None:intergenic | 30.0% | |
| TTAACCAATCTTGTTCTGTT+CGG | + | chr2_4:61765613-61765632 | None:intergenic | 30.0% | |
| ! | AACAGAACAAGATTGGTTAA+TGG | - | chr2_4:61765613-61765632 | Msa0340410:intron | 30.0% |
| ! | GATTGGTTAATGGAACTTAT+TGG | - | chr2_4:61765623-61765642 | Msa0340410:intron | 30.0% |
| GAAATGTTTAGGAAACCTAG+CGG | - | chr2_4:61764894-61764913 | Msa0340410:CDS | 35.0% | |
| ! | AAGATGTTGATGAAGGTCTA+AGG | - | chr2_4:61765009-61765028 | Msa0340410:intron | 35.0% |
| ! | TAACACGCAAAAACGGTTTT+CGG | + | chr2_4:61765141-61765160 | None:intergenic | 35.0% |
| GGAAATCTCTTTCTATCTCA+AGG | + | chr2_4:61765553-61765572 | None:intergenic | 35.0% | |
| TCTAAACTTATGACTGACAG+AGG | - | chr2_4:61765831-61765850 | Msa0340410:CDS | 35.0% | |
| ! | AACTAGATGTTTTCTTTGCC+AGG | - | chr2_4:61765871-61765890 | Msa0340410:CDS | 35.0% |
| ATATTGAACCCTCACTTGTA+CGG | + | chr2_4:61765924-61765943 | None:intergenic | 35.0% | |
| GTGAGGGTTCAATATCTTTA+TGG | - | chr2_4:61765929-61765948 | Msa0340410:intron | 35.0% | |
| TAAATGCGGAACTAGAAAGA+TGG | + | chr2_4:61765971-61765990 | None:intergenic | 35.0% | |
| GAAATGTTTAGGAAACCTAG+CGG | - | chr2_4:61764894-61764913 | Msa0340410:CDS | 35.0% | |
| ! | AAGATGTTGATGAAGGTCTA+AGG | - | chr2_4:61765009-61765028 | Msa0340410:intron | 35.0% |
| ! | TAACACGCAAAAACGGTTTT+CGG | + | chr2_4:61765141-61765160 | None:intergenic | 35.0% |
| GGAAATCTCTTTCTATCTCA+AGG | + | chr2_4:61765553-61765572 | None:intergenic | 35.0% | |
| TCTAAACTTATGACTGACAG+AGG | - | chr2_4:61765831-61765850 | Msa0340410:CDS | 35.0% | |
| ! | AACTAGATGTTTTCTTTGCC+AGG | - | chr2_4:61765871-61765890 | Msa0340410:CDS | 35.0% |
| ATATTGAACCCTCACTTGTA+CGG | + | chr2_4:61765924-61765943 | None:intergenic | 35.0% | |
| GTGAGGGTTCAATATCTTTA+TGG | - | chr2_4:61765929-61765948 | Msa0340410:intron | 35.0% | |
| TAAATGCGGAACTAGAAAGA+TGG | + | chr2_4:61765971-61765990 | None:intergenic | 35.0% | |
| TTCCTTCCTGTTGTCTATTG+TGG | + | chr2_4:61764991-61765010 | None:intergenic | 40.0% | |
| ! | AGGAAGGAAGATGTTGATGA+AGG | - | chr2_4:61765002-61765021 | Msa0340410:intron | 40.0% |
| ! | AACACGCAAAAACGGTTTTC+GGG | + | chr2_4:61765140-61765159 | None:intergenic | 40.0% |
| CTGCATGTCAAATCTTGCTA+TGG | + | chr2_4:61765338-61765357 | None:intergenic | 40.0% | |
| AGGAAAAACTGCTTTGTGTG+AGG | + | chr2_4:61765533-61765552 | None:intergenic | 40.0% | |
| CAAGCAGCAAGACATAAATG+CGG | + | chr2_4:61765985-61766004 | None:intergenic | 40.0% | |
| TTCCTTCCTGTTGTCTATTG+TGG | + | chr2_4:61764991-61765010 | None:intergenic | 40.0% | |
| ! | AGGAAGGAAGATGTTGATGA+AGG | - | chr2_4:61765002-61765021 | Msa0340410:intron | 40.0% |
| ! | AACACGCAAAAACGGTTTTC+GGG | + | chr2_4:61765140-61765159 | None:intergenic | 40.0% |
| CTGCATGTCAAATCTTGCTA+TGG | + | chr2_4:61765338-61765357 | None:intergenic | 40.0% | |
| AGGAAAAACTGCTTTGTGTG+AGG | + | chr2_4:61765533-61765552 | None:intergenic | 40.0% | |
| CAAGCAGCAAGACATAAATG+CGG | + | chr2_4:61765985-61766004 | None:intergenic | 40.0% | |
| ATGTTTAGGAAACCTAGCGG+CGG | - | chr2_4:61764897-61764916 | Msa0340410:CDS | 45.0% | |
| !! | TTGTCTATTGTGGTGGTGGT+CGG | + | chr2_4:61764981-61765000 | None:intergenic | 45.0% |
| CTTCCTGTTGTCTATTGTGG+TGG | + | chr2_4:61764988-61765007 | None:intergenic | 45.0% | |
| CACCACAATAGACAACAGGA+AGG | - | chr2_4:61764986-61765005 | Msa0340410:intron | 45.0% | |
| ! | TTGATGAAGGTCTAAGGCAG+AGG | - | chr2_4:61765015-61765034 | Msa0340410:intron | 45.0% |
| AACAGCGACAAAGCTCTGTT+TGG | - | chr2_4:61765053-61765072 | Msa0340410:intron | 45.0% | |
| TTGGAGTTGAAAAGGCGATC+TGG | + | chr2_4:61765080-61765099 | None:intergenic | 45.0% | |
| TGTGGTCGTTGGAGTTGAAA+AGG | + | chr2_4:61765088-61765107 | None:intergenic | 45.0% | |
| CAATCTGCAATCTTCGTTCC+TGG | + | chr2_4:61765892-61765911 | None:intergenic | 45.0% | |
| CAGGAACGAAGATTGCAGAT+TGG | - | chr2_4:61765890-61765909 | Msa0340410:intron | 45.0% | |
| TTTGCACACCGTACAAGTGA+GGG | - | chr2_4:61765913-61765932 | Msa0340410:intron | 45.0% | |
| ATGTTTAGGAAACCTAGCGG+CGG | - | chr2_4:61764897-61764916 | Msa0340410:CDS | 45.0% | |
| !! | TTGTCTATTGTGGTGGTGGT+CGG | + | chr2_4:61764981-61765000 | None:intergenic | 45.0% |
| CTTCCTGTTGTCTATTGTGG+TGG | + | chr2_4:61764988-61765007 | None:intergenic | 45.0% | |
| CACCACAATAGACAACAGGA+AGG | - | chr2_4:61764986-61765005 | Msa0340410:intron | 45.0% | |
| ! | TTGATGAAGGTCTAAGGCAG+AGG | - | chr2_4:61765015-61765034 | Msa0340410:intron | 45.0% |
| AACAGCGACAAAGCTCTGTT+TGG | - | chr2_4:61765053-61765072 | Msa0340410:intron | 45.0% | |
| TTGGAGTTGAAAAGGCGATC+TGG | + | chr2_4:61765080-61765099 | None:intergenic | 45.0% | |
| TGTGGTCGTTGGAGTTGAAA+AGG | + | chr2_4:61765088-61765107 | None:intergenic | 45.0% | |
| CAATCTGCAATCTTCGTTCC+TGG | + | chr2_4:61765892-61765911 | None:intergenic | 45.0% | |
| CAGGAACGAAGATTGCAGAT+TGG | - | chr2_4:61765890-61765909 | Msa0340410:intron | 45.0% | |
| TTTGCACACCGTACAAGTGA+GGG | - | chr2_4:61765913-61765932 | Msa0340410:intron | 45.0% | |
| CCTGTTGTCTATTGTGGTGG+TGG | + | chr2_4:61764985-61765004 | None:intergenic | 50.0% | |
| CCACCACCACAATAGACAAC+AGG | - | chr2_4:61764982-61765001 | Msa0340410:intron | 50.0% | |
| ! | ATGAAGGTCTAAGGCAGAGG+TGG | - | chr2_4:61765018-61765037 | Msa0340410:intron | 50.0% |
| TCTCTCGTCGTCACAGCAAA+TGG | - | chr2_4:61765111-61765130 | Msa0340410:intron | 50.0% | |
| CTCTCGTCGTCACAGCAAAT+GGG | - | chr2_4:61765112-61765131 | Msa0340410:intron | 50.0% | |
| GCGACCGAACAGAACAAGAT+TGG | - | chr2_4:61765606-61765625 | Msa0340410:intron | 50.0% | |
| GTTTGCACACCGTACAAGTG+AGG | - | chr2_4:61765912-61765931 | Msa0340410:intron | 50.0% | |
| CCTGTTGTCTATTGTGGTGG+TGG | + | chr2_4:61764985-61765004 | None:intergenic | 50.0% | |
| CCACCACCACAATAGACAAC+AGG | - | chr2_4:61764982-61765001 | Msa0340410:intron | 50.0% | |
| ! | ATGAAGGTCTAAGGCAGAGG+TGG | - | chr2_4:61765018-61765037 | Msa0340410:intron | 50.0% |
| TCTCTCGTCGTCACAGCAAA+TGG | - | chr2_4:61765111-61765130 | Msa0340410:intron | 50.0% | |
| CTCTCGTCGTCACAGCAAAT+GGG | - | chr2_4:61765112-61765131 | Msa0340410:intron | 50.0% | |
| GCGACCGAACAGAACAAGAT+TGG | - | chr2_4:61765606-61765625 | Msa0340410:intron | 50.0% | |
| GTTTGCACACCGTACAAGTG+AGG | - | chr2_4:61765912-61765931 | Msa0340410:intron | 50.0% | |
| TGTCTATGCGGCGATGGTGA+CGG | - | chr2_4:61764930-61764949 | Msa0340410:intron | 55.0% | |
| !! | TTGTGGTGGTGGTCGGTGAA+AGG | + | chr2_4:61764974-61764993 | None:intergenic | 55.0% |
| ACGAGAGACAGTGTGGTCGT+TGG | + | chr2_4:61765099-61765118 | None:intergenic | 55.0% | |
| TGTGACGACGAGAGACAGTG+TGG | + | chr2_4:61765106-61765125 | None:intergenic | 55.0% | |
| TGTCTATGCGGCGATGGTGA+CGG | - | chr2_4:61764930-61764949 | Msa0340410:intron | 55.0% | |
| !! | TTGTGGTGGTGGTCGGTGAA+AGG | + | chr2_4:61764974-61764993 | None:intergenic | 55.0% |
| ACGAGAGACAGTGTGGTCGT+TGG | + | chr2_4:61765099-61765118 | None:intergenic | 55.0% | |
| TGTGACGACGAGAGACAGTG+TGG | + | chr2_4:61765106-61765125 | None:intergenic | 55.0% | |
| GGCTAGCACCGCTGTCTATG+CGG | - | chr2_4:61764918-61764937 | Msa0340410:intron | 60.0% | |
| CACCATCGCCGCATAGACAG+CGG | + | chr2_4:61764929-61764948 | None:intergenic | 60.0% | |
| GGCTAGCACCGCTGTCTATG+CGG | - | chr2_4:61764918-61764937 | Msa0340410:intron | 60.0% | |
| CACCATCGCCGCATAGACAG+CGG | + | chr2_4:61764929-61764948 | None:intergenic | 60.0% | |
| CACCGCTGTCTATGCGGCGA+TGG | - | chr2_4:61764924-61764943 | Msa0340410:intron | 65.0% | |
| !! | CTATGCGGCGATGGTGACGG+TGG | - | chr2_4:61764933-61764952 | Msa0340410:intron | 65.0% |
| !! | GCGATGGTGACGGTGGTGCT+AGG | - | chr2_4:61764940-61764959 | Msa0340410:intron | 65.0% |
| CACCGCTGTCTATGCGGCGA+TGG | - | chr2_4:61764924-61764943 | Msa0340410:intron | 65.0% | |
| !! | CTATGCGGCGATGGTGACGG+TGG | - | chr2_4:61764933-61764952 | Msa0340410:intron | 65.0% |
| !! | GCGATGGTGACGGTGGTGCT+AGG | - | chr2_4:61764940-61764959 | Msa0340410:intron | 65.0% |
| ! | CAGCGGTGCTAGCCGCCGCT+AGG | + | chr2_4:61764912-61764931 | None:intergenic | 75.0% |
| ! | CAGCGGTGCTAGCCGCCGCT+AGG | + | chr2_4:61764912-61764931 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61764815 | 61766005 | 61764815 | ID=Msa0340410;Name=Msa0340410 |
| chr2_4 | mRNA | 61764815 | 61766005 | 61764815 | ID=Msa0340410-mRNA-1;Parent=Msa0340410;Name=Msa0340410-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.66|0.5|0.66|3|0|114 |
| chr2_4 | exon | 61765997 | 61766005 | 61765997 | ID=Msa0340410-mRNA-1:exon:19534;Parent=Msa0340410-mRNA-1 |
| chr2_4 | exon | 61765674 | 61765896 | 61765674 | ID=Msa0340410-mRNA-1:exon:19533;Parent=Msa0340410-mRNA-1 |
| chr2_4 | exon | 61764815 | 61764927 | 61764815 | ID=Msa0340410-mRNA-1:exon:19532;Parent=Msa0340410-mRNA-1 |
| chr2_4 | CDS | 61765997 | 61766005 | 61765997 | ID=Msa0340410-mRNA-1:cds;Parent=Msa0340410-mRNA-1 |
| chr2_4 | CDS | 61765674 | 61765896 | 61765674 | ID=Msa0340410-mRNA-1:cds;Parent=Msa0340410-mRNA-1 |
| chr2_4 | CDS | 61764815 | 61764927 | 61764815 | ID=Msa0340410-mRNA-1:cds;Parent=Msa0340410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
